ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1098 good F KOG2835 Nucleotide transport and metabolism Phosphoribosylamidoimidazole-succinocarboxamide synthase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1098 389031 388105 -309
(309 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YAR015w [F] KOG2835 Phosphoribosylamidoimidazole-succinocarboxam... 505 e-143
SPBC409.10 [F] KOG2835 Phosphoribosylamidoimidazole-succinocarbo... 346 2e-95
At3g21110 [F] KOG2835 Phosphoribosylamidoimidazole-succinocarbox... 139 4e-33
Hs5453539 [F] KOG2835 Phosphoribosylamidoimidazole-succinocarbox... 54 3e-07
>YAR015w [F] KOG2835 Phosphoribosylamidoimidazole-succinocarboxamide
synthase
Length = 306
Score = 505 bits (1300), Expect = e-143
Identities = 247/304 (81%), Positives = 273/304 (89%)
Query: 5 SITQTNLDGILPLVARGKVRDIYQVDDQTLLFVATDRISAYDVIMKNAIPEKGILLTKLS 64
SIT+T LDGILPLVARGKVRDIY+VD TLLFVATDRISAYDVIM+N+IPEKGILLTKLS
Sbjct: 2 SITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLS 61
Query: 65 EFWFDFLKEDVRNHLKPLGPGETIFDKLPAKLSESKYKVQLEGRSLLVQKHKLIPLEVIV 124
EFWF FL DVRNHL + PG+TIFD LPAKLSE KYK QLE RSLLV KHKLIPLEVIV
Sbjct: 62 EFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIV 121
Query: 125 RGFITGSAWKEYKKTGTVHGLPQPEGLLESQEFPSPIFTPSTKAEQGEHDENISPEQAAR 184
RG+ITGSAWKEY KTGTVHGL QP+GL ESQEFP PIFTPSTKAEQGEHDENISP QAA
Sbjct: 122 RGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAE 181
Query: 185 LVGQDLCDRIEKLAIKLYTKCKDFAKSRGIIIADTKFEFGIDESTNEIILVDEVLTPDSS 244
LVG+DL R+ +LA+KLY+KCKD+AK +GIIIADTKFEFGIDE TNEIILVDEVLTPDSS
Sbjct: 182 LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSS 241
Query: 245 RFWNGTNFEVGKTQDSYDKQFLRNWLTDNKLAGVDGVEMPQDIADRTRSKYIEAYEQITG 304
RFWNG +++VG++QDSYDKQFLR+WLT NKL GV+GV+MPQDI DRTR+KYIEAYE +TG
Sbjct: 242 RFWNGASYKVGESQDSYDKQFLRDWLTANKLNGVNGVKMPQDIVDRTRAKYIEAYETLTG 301
Query: 305 QKWN 308
KW+
Sbjct: 302 SKWS 305
>SPBC409.10 [F] KOG2835 Phosphoribosylamidoimidazole-succinocarboxamide
synthase
Length = 299
Score = 346 bits (888), Expect = 2e-95
Identities = 168/306 (54%), Positives = 233/306 (75%), Gaps = 11/306 (3%)
Query: 5 SITQTNLDGILPLVARGKVRDIYQVDD--QTLLFVATDRISAYDVIMKNAIPEKGILLTK 62
++ +T+LD +A GKVRD+Y+ + LLFVATDRISAYD IM+N IPEKG +LTK
Sbjct: 2 ALLKTSLDAPFTKIATGKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTK 61
Query: 63 LSEFWFDFLKEDVRNHLKPLGPGETIFDKLPAKLSESKYKVQLEGRSLLVQKHKLIPLEV 122
+SEFWFD LK V+ HL + +++LP +++ + +L+ RS+LV+K+K++P+E
Sbjct: 62 ISEFWFDVLKPHVQTHLIT-----SRWEELPPVITKHE---ELKDRSMLVKKYKILPIEA 113
Query: 123 IVRGFITGSAWKEYKKTGTVHGLPQPEGLLESQEFPSPIFTPSTKAEQGEHDENISPEQA 182
IVRG+ITGSAWKEY+K GTVHGL P G+ E++ FP P+FTPSTKA +G HDENI P++
Sbjct: 114 IVRGYITGSAWKEYQKQGTVHGLNVPTGMKEAEAFPEPLFTPSTKAAEG-HDENIHPDEV 172
Query: 183 ARLVGQDLCDRIEKLAIKLYTKCKDFAKSRGIIIADTKFEFGIDESTNEIILVDEVLTPD 242
+++VG +L ++ + ++KLY +D A +GIIIADTKFEFG+DE+TN+I+LVDEVLTPD
Sbjct: 173 SKIVGPELAKQVAETSVKLYKIARDVALKKGIIIADTKFEFGVDETTNKIVLVDEVLTPD 232
Query: 243 SSRFWNGTNFEVGKTQDSYDKQFLRNWLTDNKLAGVDGVEMPQDIADRTRSKYIEAYEQI 302
SSRFW +++ VGK+ DS+DKQ+LRNWLT N LA V +P+D+ + TR KY+EAYE I
Sbjct: 233 SSRFWLASDYTVGKSPDSFDKQYLRNWLTANNLANKPNVSLPEDVVEATRRKYVEAYEMI 292
Query: 303 TGQKWN 308
TG+KW+
Sbjct: 293 TGKKWS 298
>At3g21110 [F] KOG2835 Phosphoribosylamidoimidazole-succinocarboxamide
synthase
Length = 411
Score = 139 bits (351), Expect = 4e-33
Identities = 103/320 (32%), Positives = 161/320 (50%), Gaps = 43/320 (13%)
Query: 6 ITQTNLDGILPLVA---RGKVRDIYQVDDQTLLFVATDRISAYDVIMKNAIPEKGILLTK 62
+++TNL +P + +GKVRDIY D L+ + TDR+SA+D + + IP KG +L +
Sbjct: 94 LSETNLLATVPGLKSRIKGKVRDIYDAGDY-LVLITTDRLSAFDRNLAS-IPFKGQVLNE 151
Query: 63 LSEFWFDFLKEDVRNHLKPLGPGETIFDKLPAKLSESKYKVQLEGRSLLVQKHKLIPLEV 122
S +WF N+ + + P + + ++ +K + P+E
Sbjct: 152 TSLWWF--------NNTQHITPNAIVSSP--------------DRNVVIAKKCSVFPIEF 189
Query: 123 IVRGFITGSA----WKEYKK-TGTVHGLPQPEGLLESQEFPSPIFTPSTKAEQGEHDENI 177
+VRG++TGS W Y K G +GL+++Q+ P+ I TP+TKA +HD I
Sbjct: 190 VVRGYVTGSTDTSLWTVYNKGVRNYCGNELSDGLVKNQKLPANILTPTTKA--ADHDVPI 247
Query: 178 SPEQAAR--LVGQDLCDRIEKLAIKLYTKCKDFAKSRGIIIADTKFEFGIDESTNEIILV 235
SP + + Q D A+ L+ + AK G+I+ DTK+EFG S I+L+
Sbjct: 248 SPNEIVEGGFMTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKYEFG-RSSDGSILLI 306
Query: 236 DEVLTPDSSRFWNG----TNFEVGKTQDSYDKQFLRNWLTDNKLAGVDGV--EMPQDIAD 289
DE+ TPDSSR+W F+ G ++ DK+FLR W +N D V P ++
Sbjct: 307 DEIHTPDSSRYWLAGSYEERFQKGLEPENVDKEFLRLWFKENCNPYEDEVLPAAPAELVT 366
Query: 290 RTRSKYIEAYEQITGQKWNI 309
+YI YE ITG + +I
Sbjct: 367 ELAWRYIFLYETITGSRIDI 386
>Hs5453539 [F] KOG2835 Phosphoribosylamidoimidazole-succinocarboxamide
synthase
Length = 425
Score = 53.9 bits (128), Expect = 3e-07
Identities = 60/251 (23%), Positives = 99/251 (38%), Gaps = 45/251 (17%)
Query: 21 GKVRDIYQVDDQT--LLFVATDRISAYDVIMKNAIPEKGILLTKLSEFWFDFLKEDVRNH 78
GK +++Y++ D +L + D+I+A + KN + K + K++ F L+E
Sbjct: 16 GKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQLLQEAGIKT 75
Query: 79 LKPLGPGETIFDKLPAKLSESKYKVQLEGRSLLVQKHKLIPLEVIVRGFITGSAWKEYKK 138
GET F + + ++IP+E + R TGS K
Sbjct: 76 AFTRKCGETAF---------------------IAPQCEMIPIEWVCRRIATGSFLK---- 110
Query: 139 TGTVHGLPQPEGLLESQEFPSPIFTPSTKAEQGEHDENISPEQ--------AARLVGQDL 190
+ G+ E +F P K + +D S EQ A L+GQ
Sbjct: 111 --------RNPGVKEGYKFYPPKVELFFK-DDANNDPQWSEEQLIAAKFCFAGLLIGQTE 161
Query: 191 CDRIEKLAIKLYTKCKDFAKSRGIIIADTKFEFGIDESTNEIILVDEVLTPDSSRFWNGT 250
D + ++ + + + D K EFG+D +T EI+L D V+ DS R W
Sbjct: 162 VDIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLAD-VIDNDSWRLWPSG 220
Query: 251 NFEVGKTQDSY 261
+ K + SY
Sbjct: 221 DRSQQKDKQSY 231
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,804,760
Number of Sequences: 60738
Number of extensions: 827721
Number of successful extensions: 2077
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2063
Number of HSP's gapped (non-prelim): 4
length of query: 309
length of database: 30,389,216
effective HSP length: 106
effective length of query: 203
effective length of database: 23,950,988
effective search space: 4862050564
effective search space used: 4862050564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)