ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1174 check: MH A KOG0346 RNA processing and modification RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1174 419001 417220 -594
(594 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR276c [A] KOG0346 RNA helicase 786 0.0
SPCC1494.06c [A] KOG0346 RNA helicase 518 e-146
Hs9506931 [A] KOG0346 RNA helicase 409 e-114
At4g34910 [A] KOG0346 RNA helicase 350 3e-96
7295505 [A] KOG0346 RNA helicase 345 1e-94
CE27728 [A] KOG0346 RNA helicase 294 3e-79
YLL008w [A] KOG0338 ATP-dependent RNA helicase 163 6e-40
CE00337 [A] KOG0330 ATP-dependent RNA helicase 155 2e-37
7304081 [A] KOG0338 ATP-dependent RNA helicase 150 5e-36
7298752 [A] KOG0330 ATP-dependent RNA helicase 150 7e-36
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 147 6e-35
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 145 1e-34
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 144 4e-34
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 144 4e-34
CE27553 [A] KOG0337 ATP-dependent RNA helicase 144 5e-34
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 143 8e-34
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 141 3e-33
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 141 3e-33
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 139 9e-33
CE28031 [A] KOG0334 RNA helicase 139 9e-33
CE27427 [A] KOG0334 RNA helicase 139 9e-33
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 139 2e-32
YHR065c [A] KOG0330 ATP-dependent RNA helicase 138 2e-32
7290853 [A] KOG0331 ATP-dependent RNA helicase 137 4e-32
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 136 1e-31
SPCC10H11.01 [A] KOG0334 RNA helicase 135 1e-31
YBR142w [A] KOG0347 RNA helicase 135 2e-31
At1g20920 [A] KOG0334 RNA helicase 135 2e-31
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 135 2e-31
7293060 [A] KOG0334 RNA helicase 134 3e-31
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 134 4e-31
YPL119c [A] KOG0335 ATP-dependent RNA helicase 133 9e-31
7295314 [A] KOG0331 ATP-dependent RNA helicase 133 9e-31
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 132 1e-30
CE18785 [A] KOG0331 ATP-dependent RNA helicase 132 1e-30
7298989 [A] KOG0336 ATP-dependent RNA helicase 132 1e-30
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 130 7e-30
CE23832 [A] KOG0341 DEAD-box protein abstrakt 129 1e-29
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 127 5e-29
CE27030 [A] KOG0338 ATP-dependent RNA helicase 127 6e-29
7294797 [A] KOG0339 ATP-dependent RNA helicase 127 6e-29
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 126 1e-28
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 125 2e-28
7296646 [A] KOG0331 ATP-dependent RNA helicase 125 2e-28
YDL031w [A] KOG0337 ATP-dependent RNA helicase 125 2e-28
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 125 2e-28
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 124 3e-28
At3g09620 [A] KOG0334 RNA helicase 124 3e-28
7293348 [A] KOG0348 ATP-dependent RNA helicase 124 4e-28
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 124 5e-28
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 123 7e-28
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 123 7e-28
YDL160c [A] KOG0326 ATP-dependent RNA helicase 123 9e-28
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 122 1e-27
CE11190 [A] KOG0347 RNA helicase 122 2e-27
At3g16840 [A] KOG0347 RNA helicase 122 2e-27
7298204 [A] KOG0335 ATP-dependent RNA helicase 122 2e-27
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 122 2e-27
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 121 3e-27
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 121 3e-27
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 121 3e-27
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 121 3e-27
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 121 3e-27
7296891 [A] KOG0341 DEAD-box protein abstrakt 121 3e-27
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 120 4e-27
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 120 4e-27
YOR046c [A] KOG0332 ATP-dependent RNA helicase 120 6e-27
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 120 6e-27
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 120 6e-27
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 120 6e-27
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 120 6e-27
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 119 1e-26
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 119 1e-26
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 119 1e-26
CE17559 [A] KOG0339 ATP-dependent RNA helicase 119 2e-26
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 118 2e-26
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 118 2e-26
SPBC4F6.07c [A] KOG0347 RNA helicase 115 1e-25
Hs7662318 [A] KOG0334 RNA helicase 115 1e-25
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 115 1e-25
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 115 2e-25
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 115 2e-25
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 115 2e-25
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 115 2e-25
CE25121 [A] KOG0335 ATP-dependent RNA helicase 114 3e-25
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 113 7e-25
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 113 7e-25
YGL078c [A] KOG0331 ATP-dependent RNA helicase 113 7e-25
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 113 7e-25
7299006 [A] KOG0345 ATP-dependent RNA helicase 113 7e-25
YHR169w [A] KOG0340 ATP-dependent RNA helicase 113 9e-25
YGL171w [A] KOG0344 ATP-dependent RNA helicase 112 1e-24
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 112 2e-24
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 112 2e-24
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 112 2e-24
CE07736 [A] KOG0335 ATP-dependent RNA helicase 112 2e-24
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 111 3e-24
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 111 3e-24
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 111 3e-24
7297629 [A] KOG0326 ATP-dependent RNA helicase 111 4e-24
SPAC1093.05 [A] KOG0343 RNA Helicase 110 5e-24
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 110 6e-24
YJL033w [A] KOG0343 RNA Helicase 109 1e-23
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 109 1e-23
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 109 1e-23
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 109 1e-23
YOR204w [A] KOG0335 ATP-dependent RNA helicase 109 1e-23
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 108 2e-23
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 108 2e-23
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 108 2e-23
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 108 2e-23
YNL112w [A] KOG0331 ATP-dependent RNA helicase 108 2e-23
YFL002c [A] KOG0345 ATP-dependent RNA helicase 108 2e-23
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 108 2e-23
CE09012 [A] KOG0335 ATP-dependent RNA helicase 108 2e-23
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 107 4e-23
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 107 4e-23
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 107 4e-23
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 107 4e-23
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 107 5e-23
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 107 5e-23
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 107 7e-23
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 107 7e-23
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 106 9e-23
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 106 1e-22
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 106 1e-22
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 106 1e-22
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 105 1e-22
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 105 2e-22
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 105 2e-22
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 105 3e-22
7299061 [A] KOG0335 ATP-dependent RNA helicase 104 3e-22
CE00839 [A] KOG0326 ATP-dependent RNA helicase 104 4e-22
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 103 6e-22
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 103 6e-22
7303950 [A] KOG0340 ATP-dependent RNA helicase 103 6e-22
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 103 7e-22
CE28369 [A] KOG0335 ATP-dependent RNA helicase 103 1e-21
CE24451 [A] KOG0335 ATP-dependent RNA helicase 103 1e-21
YBR237w [A] KOG0334 RNA helicase 102 1e-21
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 102 1e-21
CE03025 [A] KOG0329 ATP-dependent RNA helicase 102 1e-21
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 102 1e-21
7296990 [A] KOG0329 ATP-dependent RNA helicase 102 1e-21
7293369 [A] KOG0343 RNA Helicase 102 1e-21
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 102 2e-21
CE22474 [A] KOG0336 ATP-dependent RNA helicase 102 2e-21
CE29052 [A] KOG0335 ATP-dependent RNA helicase 102 2e-21
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 101 3e-21
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 101 4e-21
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 100 5e-21
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 100 5e-21
Hs13514831 [A] KOG0343 RNA Helicase 100 5e-21
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 100 6e-21
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 100 6e-21
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 100 6e-21
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 100 8e-21
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 100 8e-21
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 99 1e-20
ECU10g1680 [A] KOG0343 RNA Helicase 99 1e-20
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 99 2e-20
7302399 [A] KOG0347 RNA helicase 99 2e-20
YDL084w [A] KOG0329 ATP-dependent RNA helicase 98 3e-20
CE23814 [A] KOG0340 ATP-dependent RNA helicase 98 3e-20
CE28485 [K] KOG4284 DEAD box protein 97 5e-20
CE29051 [A] KOG0335 ATP-dependent RNA helicase 97 9e-20
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 97 9e-20
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 96 1e-19
YKR024c [A] KOG0348 ATP-dependent RNA helicase 96 2e-19
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 96 2e-19
CE18221 [A] KOG0332 ATP-dependent RNA helicase 95 3e-19
CE18220 [A] KOG0332 ATP-dependent RNA helicase 95 3e-19
CE18219 [A] KOG0332 ATP-dependent RNA helicase 95 3e-19
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 95 3e-19
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 94 4e-19
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 94 4e-19
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 94 6e-19
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 94 6e-19
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 94 8e-19
Hs14251212 [K] KOG4284 DEAD box protein 93 1e-18
At5g54910 [A] KOG0343 RNA Helicase 93 1e-18
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 93 1e-18
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 92 2e-18
Hs9966805 [A] KOG0347 RNA helicase 92 2e-18
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 92 2e-18
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 92 3e-18
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 92 3e-18
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 92 3e-18
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 92 3e-18
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 92 3e-18
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 91 4e-18
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 91 5e-18
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 91 6e-18
CE25231 [A] KOG0343 RNA Helicase 91 6e-18
7296165 [A] KOG0330 ATP-dependent RNA helicase 90 1e-17
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 89 1e-17
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 89 2e-17
7294824 [K] KOG4284 DEAD box protein 89 2e-17
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 88 4e-17
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 87 5e-17
CE06239 [A] KOG0344 ATP-dependent RNA helicase 87 5e-17
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 86 1e-16
CE11402 [A] KOG0334 RNA helicase 86 2e-16
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 85 4e-16
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 84 6e-16
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 82 2e-15
YGL064c [A] KOG0335 ATP-dependent RNA helicase 80 9e-15
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 80 1e-14
7293941 [A] KOG0344 ATP-dependent RNA helicase 79 3e-14
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 77 7e-14
CE03821 [A] KOG0345 ATP-dependent RNA helicase 77 7e-14
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 73 1e-12
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 72 2e-12
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 72 2e-12
7290730 [A] KOG0331 ATP-dependent RNA helicase 72 2e-12
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 70 7e-12
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 70 7e-12
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 70 7e-12
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 68 4e-11
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 67 6e-11
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 66 1e-10
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 65 4e-10
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 64 8e-10
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 63 1e-09
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 60 1e-08
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 58 4e-08
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 56 1e-07
CE15167 [A] KOG0335 ATP-dependent RNA helicase 55 4e-07
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 54 5e-07
CE27320 [A] KOG0335 ATP-dependent RNA helicase 54 5e-07
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 54 7e-07
CE26264 [A] KOG0335 ATP-dependent RNA helicase 53 1e-06
CE06825 [A] KOG0335 ATP-dependent RNA helicase 52 2e-06
CE28975 [A] KOG0335 ATP-dependent RNA helicase 50 1e-05
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 786 bits (2030), Expect = 0.0
Identities = 412/598 (68%), Positives = 477/598 (78%), Gaps = 18/598 (3%)
Query: 5 SASQGYIXXXXXXXXXXXXXXXXQAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGS 64
S YI QAI++IGF++PTLIQS AIPLALQ+KRDIIAKA+TGS
Sbjct: 7 SVEGAYIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGS 66
Query: 65 GKTLAYLIPVIQTILDHKKA-DQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIK 123
GKTLAYLIPVI+TIL++KK D +E TLG+ILVPTRELAQQV V+EKL+++CS++I+
Sbjct: 67 GKTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIR 126
Query: 124 CLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQ--DVNIDRLKFLVIDEVDLVL 181
LN+SS ++S ++L +LL + PEI++ TP KL+DLL + ++++ LKFLV+DEVDLVL
Sbjct: 127 TLNISS-DMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVL 185
Query: 182 TFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQT 241
TFGYQ+DL KI E LPL+K+LQTFLMSATLNDDIQ LKQ+FCRSPAILK ND+E+NK+Q
Sbjct: 186 TFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQN 245
Query: 242 KLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNS 301
KL+QYYVKV EFDKFLLCYVIFKL LIKGKTLIFVNNIDRGYRLKLV+EQFGIKSCILNS
Sbjct: 246 KLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNS 305
Query: 302 ELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKD 361
ELP NSRQHIV++FNKNVYQLLIATDDT E S +
Sbjct: 306 ELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEE---KSLEGEPE 362
Query: 362 NAKK-QKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGI 420
N KK KK K+ V+KDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHR+GRTAR GK+G
Sbjct: 363 NDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGT 422
Query: 421 SISFVVPLKEFGKHKPSMIKSAKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRM 480
+ISFVVPLKEFGKHKPSM+++AKKDE+IL RIIKQQ+KLG ELQPY FD KQVE FRYRM
Sbjct: 423 AISFVVPLKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYKFDQKQVEAFRYRM 482
Query: 481 EDGFRAVTQVAIREARIKELKQELLASEKLKRHFEENPHDLESLRHDKELHPARVQQHLK 540
EDGFRAVTQVAIREAR+KELKQELLASEKLKRHFEENP +L+SLRHDKELHPARVQQHLK
Sbjct: 483 EDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELHPARVQQHLK 542
Query: 541 RVPDYLLPETARKDNKKIGFVPFH----KNSHXXXXXXXXXXXXXXXXXXSDPLKSFK 594
RVPDYLLPE+AR + K+ FVPFH ++SH DPLK+FK
Sbjct: 543 RVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKV------DPLKNFK 594
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 518 bits (1334), Expect = e-146
Identities = 286/556 (51%), Positives = 377/556 (67%), Gaps = 28/556 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI F+ PT +QS IPLAL+ K D++A+A TGSGKT AYLIP+++ +L K+ D+N
Sbjct: 27 RAIHKCEFEKPTSVQSETIPLALEGK-DLVAQARTGSGKTAAYLIPILELLLKQKQIDEN 85
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G ++LVPTRELAQQV V+EKL FCS+ I+ +N+++ N S + + LL + P+I
Sbjct: 86 QRGI-FALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVAT-NSSDTVQRPLLLDLPDI 143
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+IATP++ V + + + +D+LKFLVIDE DL+L+FGY ED+ +S LP + Q+FLM
Sbjct: 144 VIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLP--RGTQSFLM 201
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SATL+ +I L++ CR+P IL + D E + KL QY VK E DKFLL Y++ KL L
Sbjct: 202 SATLSKNIASLQKLVCRNPFILAVKDKEASG---KLTQYVVKCSEQDKFLLAYILLKLRL 258
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
IKGK LIFVN I+R YRLKL LEQFG+KS +LNSELP NSR HI+E++NK +YQ++IATD
Sbjct: 259 IKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATD 318
Query: 328 DTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTT-KDN-------------AKKQKKPKLNV 373
++ V D T+ KD AK + K K V
Sbjct: 319 ESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRV 378
Query: 374 EKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGK 433
++DKEYGV+RG+DF+NVACVLNFD+P+ KSY+HRIGRTARAGK G ++SFVVP E GK
Sbjct: 379 KQDKEYGVARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVGK 438
Query: 434 HKPSMIKSAKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIR 493
HKP+ ++S KKDE +L R+ K+Q LQPY+FD Q++ FRYRMED RAVT VA+
Sbjct: 439 HKPTSLESCKKDESVLRRLEKKQ----ISLQPYSFDKNQIDAFRYRMEDALRAVTTVAVS 494
Query: 494 EARIKELKQELLASEKLKRHFEENPHDLESLRHD--KELHPARVQQHLKRVPDYLLPETA 551
AR ELKQELL SEKLK +F ENP +L SL HD + Q+HL+ VP+YLLP+
Sbjct: 495 AARAAELKQELLISEKLKSYFAENPDELLSLTHDTVSSVRLGHTQRHLRHVPEYLLPKGM 554
Query: 552 RKDNKKIGFVPFHKNS 567
+ NK IGFVPF KN+
Sbjct: 555 QAVNKDIGFVPFKKNN 570
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 409 bits (1050), Expect = e-114
Identities = 233/569 (40%), Positives = 339/569 (58%), Gaps = 56/569 (9%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
QA+ +G+ PTLIQ AIPLAL+ K D++A+A TGSGKT AY IP++Q +L K
Sbjct: 20 QAVTDLGWSRPTLIQEKAIPLALEGK-DLLARARTGSGKTAAYAIPMLQLLLHRKATGPV 78
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
E A G++LVPT+ELA+Q ++++L +C+++++ N+S+ S + +++L E P++
Sbjct: 79 VEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQ-RAVLMEKPDV 137
Query: 148 LIATPAKLVDLLDAQDVNI-DRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
++ TP++++ L + + D L+ LV+DE DL+ +FG++E+L + LP + Q FL
Sbjct: 138 VVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP--RIYQAFL 195
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEV-NKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
MSAT N+D+Q LK+ +P LKL + ++ DQ + Q + E DKFLL Y + KL
Sbjct: 196 MSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEE-DKFLLLYALLKL 254
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
LI+GK+L+FVN ++R YRL+L LEQF I +C+LN ELP SR HI+ +FN+ Y +IA
Sbjct: 255 SLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIA 314
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD EV+ ++ + PK + D E GV+RG+
Sbjct: 315 TD---------------------AEVLG----APVKGKRRGRGPKGDKASDPEAGVARGI 349
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKKD 445
DF +V+ VLNFDLP T ++Y+HR GRTARA GI ++FV+P ++F K + S +
Sbjct: 350 DFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENR 409
Query: 446 EKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKELKQELL 505
I L PY F ++++EGFRYR D R+VT+ AIREAR+KE+K+ELL
Sbjct: 410 GPI--------------LLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELL 455
Query: 506 ASEKLKRHFEENPHDLESLRHDKELHPARVQQHLKRVPDYLLPETARKDNKKIGFVPFHK 565
SEKLK +FE+NP DL+ LRHD LHPA V+ HL VPDYL+P R G V HK
Sbjct: 456 HSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHK 509
Query: 566 NSHXXXXXXXXXXXXXXXXXXSDPLKSFK 594
+PL+SFK
Sbjct: 510 K----RKKLSSSCRKAKRAKSQNPLRSFK 534
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 350 bits (898), Expect = 3e-96
Identities = 220/577 (38%), Positives = 321/577 (55%), Gaps = 47/577 (8%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+ G + PTLIQ SAIP L+ K D++A+A TGSGKTLAYL+P++Q + +
Sbjct: 59 RALTKKGIEKPTLIQQSAIPYILEGK-DVVARAKTGSGKTLAYLLPLLQKLFSADSVSKK 117
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+ A ILVP+REL QQV V LI C ++K + L+S ++S + +++ L PEI
Sbjct: 118 -KLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTS-SMSASDMRNALAGLPEI 175
Query: 148 LIATPAKL-----VDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSL 202
L++TPA + +L+ V+ + L LV+DE DL+L++GY+++L ++ +P R
Sbjct: 176 LVSTPACIPKCFAAGVLEPTAVS-ESLSILVLDEADLLLSYGYEDNLRSVTSIIPRR--C 232
Query: 203 QTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQ--TKLIQYYVKVGEFDKFLLCY 260
Q LMSAT + D++ LK+ +P +L L +D ++ + + Q+++ DK L
Sbjct: 233 QCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHIL 292
Query: 261 VIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVY 320
+ KL +++ K LIF+N ID G+RLKL LE+FGIKS ILN ELP NSR HI+E+FN ++
Sbjct: 293 ALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLF 352
Query: 321 QLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYG 380
LIATDD E ++ K N K+ KPKL D E+G
Sbjct: 353 DYLIATDDNSQTKKQKE------------EAKGEANKENKKN-NKRSKPKL----DAEFG 395
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP--LKEFGKHKPSM 438
V RG+DFK V V+NFD+P + Y+HRIGRT RA SG S+S + P ++ F K +
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFL 455
Query: 439 IKSAKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIK 498
KD I+ F L N VE RYR ED ++VT++A+RE+R +
Sbjct: 456 ASDKNKDIDII---------TPFPLLTEN----AVESLRYRAEDVAKSVTKIAVRESRAQ 502
Query: 499 ELKQELLASEKLKRHFEENPHDLESLRHDKELHPARVQQHLKRVPDYLLPETARKDNK-- 556
+L+ E++ SEKLK HFE NP DL+ LRHDK L HLK +P+YL+ ++ +K
Sbjct: 503 DLRNEIINSEKLKAHFEANPRDLDLLRHDKPLSKTAPAPHLKDIPEYLVDAKTQEASKMV 562
Query: 557 KIGFVPFHKNSHXXXXXXXXXXXXXXXXXXSDPLKSF 593
K+ SDPLK+F
Sbjct: 563 KLARAAMGNTRRSGGGGGRNNKNKKRSRKGSDPLKTF 599
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 345 bits (885), Expect = 1e-94
Identities = 198/529 (37%), Positives = 306/529 (57%), Gaps = 48/529 (9%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+ +G++ PTLIQS+AIPL L+ K D++ +A TGSGKT Y +P+IQ IL+ K
Sbjct: 22 KAVAQLGWQQPTLIQSTAIPLLLEGK-DVVVRARTGSGKTATYALPLIQKILNSKL--NA 78
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
E V+L PT++L +Q +V+E+L+ C + ++ +++ + + L+E+P+I
Sbjct: 79 SEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESPDI 138
Query: 148 LIATPAKLVDLLDAQDV-NIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
++ATPA L+ +A V ++ ++ LV+DE DLV +GY++D ++ + LP Q L
Sbjct: 139 VVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLP--PIYQAVL 196
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
+SATL DD+ +K +P LKL + E+ Q +L + E DK + Y + KL
Sbjct: 197 VSATLTDDVVRMKGLCLNNPVTLKLEEPEL-VPQDQLSHQRILAEENDKPAILYALLKLR 255
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
LI+GK++IFVN+IDR Y+++L LEQFGI++C+LNSELPAN R H + +FNK Y ++IA+
Sbjct: 256 LIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIAS 315
Query: 327 DDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVD 386
D+ K K K D E SRG+D
Sbjct: 316 DEHHME---------------------------KPGGKSATNRKSPRSGDMESSASRGID 348
Query: 387 FKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKKDE 446
F+ V V+NFD P SY+HR GRTAR G +SFV +K +K ++
Sbjct: 349 FQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFV------------SMKESKVND 396
Query: 447 KILGRIIKQQAKLGFE--LQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKELKQEL 504
+ ++ A E ++ Y F +++VE FRYR +D +RA T+VA+ + RI+E+K E+
Sbjct: 397 SVEKKLCDSFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREIKIEI 456
Query: 505 LASEKLKRHFEENPHDLESLRHDKELHPARVQQHLKRVPDYLLPETARK 553
L EKLK FEEN DL++LRHDK L +VQ HL +P+Y++P+ ++
Sbjct: 457 LNCEKLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALKR 505
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 294 bits (752), Expect = 3e-79
Identities = 188/534 (35%), Positives = 301/534 (56%), Gaps = 51/534 (9%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
++I +G++ +Q S I LAL+ K +I+ +A TGSGKT A+LIP++Q ++ K +
Sbjct: 102 KSIGELGWEKANQVQESVISLALENK-NIMGRARTGSGKTGAFLIPLVQKLIAESKTNDG 160
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEI---KCLNLSSGNVSGNLLKSLLTEN 144
G + VI+ PT+EL Q+ KL V SQ + + +NL N N + L +
Sbjct: 161 SVGPS-AVIIAPTKELITQIY----KLFVKLSQALPFLQAINLCDINEEENSV--WLEDR 213
Query: 145 PEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
+++ TP KL+ + + + +LV+DE DL+L+FGY+E++ KI +LP + Q
Sbjct: 214 SHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLP--PTYQC 271
Query: 205 FLMSATLNDDIQHLKQQFCRSPAI-LKLNDDEV-NKDQTKLIQYYVKVG-EFDKFLLCYV 261
+ SATL DD+ LK+ F P I +KL + ++ N DQ L QY + G + ++F +
Sbjct: 272 LMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQ--LTQYQLTCGSDEERFAILVA 329
Query: 262 IFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
+FKL LI G++++FVN IDR Y+L L+L FG+KSCILNS +PANSR H++ +FN+ YQ
Sbjct: 330 MFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSYQ 389
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
++IA+D + E+ S + + KK KK + DKE GV
Sbjct: 390 IVIASDVSDADGSKLKE-----------EIAGKSDEKPEKDEKKGKKAS---KLDKESGV 435
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKS 441
SRG+DF +V+ V+NFD P T +Y+HR+GRTAR G ++SF +P + + +
Sbjct: 436 SRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIP-----SERAHLEQI 490
Query: 442 AKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKELK 501
++ + +GR + LQPY F IK+++ F R + T+ I++AR+KE++
Sbjct: 491 QEEINQQMGRKV---------LQPYEFRIKELDTFLLRTREALSKCTKGVIKKARLKEIR 541
Query: 502 QELLASEKLKRHFEENPHDLESLRHDKELHPARVQQHLKRVPD---YLLPETAR 552
QEL+ S L+ F +N + E L + HP ++ + + D Y++PE R
Sbjct: 542 QELMRSANLQTFFAKN--EREKLLMQTDCHPVMLKINSPAIADVTSYMVPEALR 593
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 163 bits (413), Expect = 6e-40
Identities = 157/543 (28%), Positives = 261/543 (47%), Gaps = 95/543 (17%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ + S+G+ P+ IQS+ IP+AL K DIIA A TGSGKT A++IP+I+ +L +K A
Sbjct: 244 KGLASLGYVKPSPIQSATIPIALLGK-DIIAGAVTGSGKTAAFMIPIIERLL-YKPA--- 298
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+T ++L+PTRELA QV +V +++ F S L+ G ++ + +L P+I
Sbjct: 299 KIASTRVIVLLPTRELAIQVADVGKQIARFVSG--ITFGLAVGGLNLRQQEQMLKSRPDI 356
Query: 148 LIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+IATP + +D + ++ N+D ++ LV+DE D +L G+Q++L +I LP + Q L
Sbjct: 357 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR--QNLL 414
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKF---LLCYVIF 263
SAT+N I+ L + P +++ D K TKL Q +V++ + D LL +I
Sbjct: 415 FSATMNSKIKSLVSLSLKKP--VRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIR 472
Query: 264 KLGLIKGKTL-IFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQL 322
KL K + +FV + +RL++++ G+ L+ L R V +F +
Sbjct: 473 KLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPV 532
Query: 323 LIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVS 382
LI TD GL PK+ V
Sbjct: 533 LICTD---------------LASRGL------------------DIPKIEV--------- 550
Query: 383 RGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSA 442
V+N+D+P + + Y+HR+GRTARAG+ G S++FV + + IKS
Sbjct: 551 ----------VINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSV 600
Query: 443 KKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKELKQ 502
++++ + Q LG N D Q+E +E + + + E KE K+
Sbjct: 601 EENKS-----LTQGKALG-----RNVDWVQIEETNKLVESMNDTIEDILVEE---KEEKE 647
Query: 503 ELLASEKLKRHFEENPHDLESLRHDKELHPARVQQHLKRVPDYLLPETARKDNKKIGFVP 562
L A +L++ EN L+H KE +Q +R + E+ +K++K +G +
Sbjct: 648 ILRAEMQLRK--GEN-----MLKHKKE-----IQARPRRT--WFQSESDKKNSKVLGALS 693
Query: 563 FHK 565
+K
Sbjct: 694 RNK 696
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 155 bits (392), Expect = 2e-37
Identities = 127/473 (26%), Positives = 225/473 (46%), Gaps = 94/473 (19%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
A + +G+ P+ IQ +A+P ALQ K D+I A TGSGKT A+ IPV+Q++LDH +A
Sbjct: 58 ACQRLGWMKPSKIQQAALPHALQGK-DVIGLAETGSGKTGAFAIPVLQSLLDHPQA---- 112
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSL-------- 140
++L PTRELA Q+ Q+ + L G ++ ++ +
Sbjct: 113 ---FFCLVLTPTRELAFQI-----------GQQFEALGSGIGLIAAVIVGGVDMAAQAMA 158
Query: 141 LTENPEILIATPAKLVDLLD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLR 199
L P I++ATP +LVD L+ + N+ LKFL++DE D +L ++ +L KI + +P
Sbjct: 159 LARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRE 218
Query: 200 KSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLC 259
+ +T+L SAT+ + L++ R PA + ++ D K Q+Y+ V +K+
Sbjct: 219 R--RTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLK--QHYIFVP--NKYKET 272
Query: 260 YVIFKLGLIKGKT-LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKN 318
Y+++ L G + ++F ++ ++L Q G+++ L+ ++ R + +F
Sbjct: 273 YLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKF--- 329
Query: 319 VYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKE 378
K K ++ V D
Sbjct: 330 ----------------------------------------------KSKAREILVCTDV- 342
Query: 379 YGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVV--PLKEFGKHKP 436
+RG+D +V V+N+D+P+ +K YVHR+GRTARAG+SGI+I+ V ++ + K +
Sbjct: 343 --AARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEA 400
Query: 437 SMIKSAKKDEKILGRII-----KQQAKLGFELQPYNFDIKQVEGFRYRMEDGF 484
++ K + + + ++ Q+A ++ D K+ G + R D F
Sbjct: 401 NLGKKLDEYKCVENEVMVLVERTQEATENARIEMKEMDEKKKSGKKRRQNDDF 453
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 150 bits (379), Expect = 5e-36
Identities = 132/504 (26%), Positives = 243/504 (48%), Gaps = 85/504 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI +G+ +PT IQ+S IP+AL RDI A+TG+GKT AY++P ++ +L N
Sbjct: 170 RAIGVLGYIYPTPIQASTIPVALLG-RDICGCAATGTGKTAAYMLPTLERLL---YRPLN 225
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
++ T ++LVPTREL QV +V ++L F + ++ L+ G + +++L +NP+I
Sbjct: 226 NKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDV---GLAIGGLDVKAQEAVLRQNPDI 282
Query: 148 LIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+IATP +L+D + + +D ++ L++DE D +L + E + +I K+ QT L
Sbjct: 283 VIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIIN--SCCKTRQTML 340
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKF-----LLCYV 261
SAT+++ ++ L P + +N+++ + L Q ++++ E DK +L +
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQ--QVAFNLRQEFIRIRE-DKEGDREPILASL 397
Query: 262 IFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
I + ++FV + +RL ++L G+++ L+ L R +++F +
Sbjct: 398 ICR--TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQID 455
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
+LIATD GL ++V TV
Sbjct: 456 VLIATD---------------VAARGL-DIVGVKTV------------------------ 475
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKS 441
+NF +P T + Y+HR+GRTARAG++GIS+S G+ + ++K
Sbjct: 476 ------------INFVMPITTEHYIHRVGRTARAGRAGISVSLA------GEKERKIVKD 517
Query: 442 AKK--DEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKE 499
K + I RII + ++ Y + +E + D +A Q+A E ++ +
Sbjct: 518 IIKNAESTIKNRIIPPEI-----IEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSK 572
Query: 500 LKQELLASEKLKRHFEENPHDLES 523
+++LL +R + + E+
Sbjct: 573 TERKLLGQTNERRGWFQTKQQREA 596
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 150 bits (378), Expect = 7e-36
Identities = 118/402 (29%), Positives = 196/402 (48%), Gaps = 75/402 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
QA + +K P+ IQ AIP+ALQ K D+I A TGSGKT A+ +P++ +L++ +
Sbjct: 74 QACDELKWKAPSKIQREAIPVALQGK-DVIGLAETGSGKTGAFALPILHALLENPQR--- 129
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGN--VSGNLLKSLLTENP 145
++L PTRELA Q+ E E L IKC + G V+ L L + P
Sbjct: 130 ----YFALVLTPTRELAFQIGEQFEAL--GSGIGIKCCVVVGGMDMVAQGLQ---LAKKP 180
Query: 146 EILIATPAKLVDLLD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
I+IATP +LVD L+ + N+ +K+LV+DE D +L ++ +L KI + LP + +T
Sbjct: 181 HIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRER--RT 238
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
FL SAT+ ++ L++ + P +++++ +Q + ++ V K+ Y++
Sbjct: 239 FLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPV----KYKDVYLVHI 294
Query: 265 LGLIKGKT-LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
L + G + +IF + + + L+L G+ + L+ ++ N R + +F
Sbjct: 295 LNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKF-------- 346
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
K K + + D SR
Sbjct: 347 -----------------------------------------KAKNRSILISTDV---ASR 362
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
G+D +V V+NFD+PT +K Y+HR+GRTARAG+SG +I+ V
Sbjct: 363 GLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 404
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 147 bits (370), Expect = 6e-35
Identities = 111/423 (26%), Positives = 201/423 (47%), Gaps = 93/423 (21%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILD-HKKADQ 86
+A+ G+K P+ IQ +AIPL LQ+ RD+I A TGSGKT A+++P++ I +++
Sbjct: 326 KAVERAGYKKPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEE 384
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
N+ V++ PTRELAQQ+ E K + + + + ++ LK +T+ E
Sbjct: 385 NETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSI-VGGQSIEEQGLK--ITQGCE 441
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL-------- 198
I+IATP +L+D L+ + +++ ++V+DE D ++ G++ + + + +P
Sbjct: 442 IVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENE 501
Query: 199 -----RKSLQ--TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG 251
K + T++ SAT+ ++ L +++ R+P ++ + K + Q+ + +
Sbjct: 502 EEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT--AGKTTDLISQHVIMMK 559
Query: 252 EFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHI 311
E +KF +RL+ +L++ G K+ I+ N I
Sbjct: 560 ESEKF--------------------------FRLQKLLDELGEKTAIVFVNTKKNC-DSI 592
Query: 312 VEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKL 371
+ +K Y+ VTT K Q++ ++
Sbjct: 593 AKNLDKAGYR-----------------------------------VTTLHGGKSQEQREI 617
Query: 372 NVE--KDKEYGV-------SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISI 422
++E + K Y V RG+D +VA V+N+D+P + Y HRIGRT RAGKSG++
Sbjct: 618 SLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVAT 677
Query: 423 SFV 425
SF+
Sbjct: 678 SFL 680
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 145 bits (367), Expect = 1e-34
Identities = 129/454 (28%), Positives = 201/454 (43%), Gaps = 100/454 (22%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPV---IQTILDHKKADQ 86
I +G+K PT IQ AIP+ LQ RDII A TGSGKTLA+LIP+ IQ++ ++ +
Sbjct: 409 IDKVGYKEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLED 467
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS----LLT 142
D+G +I+ PTRELAQQ+ E K + L + + V G L + L
Sbjct: 468 VDQGP-YAIIMAPTRELAQQIEEETTKFG-------QPLGIRTVVVVGGLSREEQGFRLR 519
Query: 143 ENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL---- 198
EI+IATP +L+D+L+ + + +++ ++V+DE D ++ G++ D+ KI E +P+
Sbjct: 520 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 579
Query: 199 -------------------RKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKD 239
+K QT + +AT+ ++ L + + R PA + + V K
Sbjct: 580 PDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIG--SVGKP 637
Query: 240 QTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCIL 299
+ Q +GE DK I I +IFVN L LE+ G SC L
Sbjct: 638 TERTEQIVYMMGENDKRKKLMEILS-RKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTL 696
Query: 300 NSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTT 359
+ R++ + +L+ATD V +
Sbjct: 697 HGGKGQEQREYALAALKSGAKDILVATD------------------------VAGRGIDI 732
Query: 360 KDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSG 419
KD V+ V+N+D+ T + Y HRIGRT RAGK+G
Sbjct: 733 KD----------------------------VSLVINYDMAKTIEDYTHRIGRTGRAGKTG 764
Query: 420 ISISFV------VPLKEFGKHKPSMIKSAKKDEK 447
+IS V + +HKP + + K+ E+
Sbjct: 765 CAISPVSTCPPELMNHPEAQHKPGTVVTKKRREE 798
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 144 bits (363), Expect = 4e-34
Identities = 114/429 (26%), Positives = 190/429 (43%), Gaps = 92/429 (21%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
QA++ IG+ PT IQ AIP+ LQ RD+I A TGSGKT A+L+P++ I K ++
Sbjct: 314 QAVKEIGYLEPTPIQRQAIPIGLQN-RDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQ 372
Query: 88 DEG--ATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS----LL 141
+ +I+ PTRELAQQ+ E K K L + + +V G + L
Sbjct: 373 EHRDLGPYAIIMAPTRELAQQIEEETNKFG-------KLLGIKTVSVIGGASREDQGMKL 425
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLP---- 197
E++IATP +L+D+L+ + + +++ ++++DE D +L G++ D+ K+ E +P
Sbjct: 426 RMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNM 485
Query: 198 -------------------LRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNK 238
K QT + +AT++ I+ L +Q+ R PA++ +
Sbjct: 486 KKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPT 545
Query: 239 DQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCI 298
++ + + Y V K L V + +IFVN L L + G K +
Sbjct: 546 ERVEQVVYMVPEDRKRKKL---VEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTV 602
Query: 299 LNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVT 358
L+ + R++ ++ + +L+ATD V +
Sbjct: 603 LHGGKGQDQREYALQALKEGTSDILVATD------------------------VAGRGID 638
Query: 359 TKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKS 418
KD V+ VLN+D+ + + Y HRIGRT RAGK
Sbjct: 639 VKD----------------------------VSLVLNYDMAKSIEDYTHRIGRTGRAGKH 670
Query: 419 GISISFVVP 427
G +I+F+ P
Sbjct: 671 GKAITFLTP 679
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 144 bits (363), Expect = 4e-34
Identities = 114/429 (26%), Positives = 190/429 (43%), Gaps = 92/429 (21%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
QA++ IG+ PT IQ AIP+ LQ RD+I A TGSGKT A+L+P++ I K ++
Sbjct: 314 QAVKEIGYLEPTPIQRQAIPIGLQN-RDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQ 372
Query: 88 DEG--ATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS----LL 141
+ +I+ PTRELAQQ+ E K K L + + +V G + L
Sbjct: 373 EHRDLGPYAIIMAPTRELAQQIEEETNKFG-------KLLGIKTVSVIGGASREDQGMKL 425
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLP---- 197
E++IATP +L+D+L+ + + +++ ++++DE D +L G++ D+ K+ E +P
Sbjct: 426 RMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNM 485
Query: 198 -------------------LRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNK 238
K QT + +AT++ I+ L +Q+ R PA++ +
Sbjct: 486 KKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPT 545
Query: 239 DQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCI 298
++ + + Y V K L V + +IFVN L L + G K +
Sbjct: 546 ERVEQVVYMVPEDRKRKKL---VEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTV 602
Query: 299 LNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVT 358
L+ + R++ ++ + +L+ATD V +
Sbjct: 603 LHGGKGQDQREYALQALKEGTSDILVATD------------------------VAGRGID 638
Query: 359 TKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKS 418
KD V+ VLN+D+ + + Y HRIGRT RAGK
Sbjct: 639 VKD----------------------------VSLVLNYDMAKSIEDYTHRIGRTGRAGKH 670
Query: 419 GISISFVVP 427
G +I+F+ P
Sbjct: 671 GKAITFLTP 679
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 144 bits (362), Expect = 5e-34
Identities = 114/410 (27%), Positives = 198/410 (47%), Gaps = 61/410 (14%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF PT IQ IP + + +D++A + TGSGKT A++IP++Q K +
Sbjct: 37 KAIEKKGFNQPTPIQRKTIP-CIMDGKDVVAMSRTGSGKTAAFVIPMLQ------KLKRR 89
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLK---SLLTEN 144
D +++ PTRELA Q +VV++L F CL V G+ ++ S + EN
Sbjct: 90 DTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACL------VGGDQIEEQFSTIHEN 143
Query: 145 PEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
P+IL+ATP +L+ ++ D+ + ++++V DE D + G+Q+ LT+ +R+P +S QT
Sbjct: 144 PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIP--ESRQT 201
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
L SATL + + P +++L+ DE D+ ++ F +C
Sbjct: 202 LLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMV-----------FCMCR---- 246
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+ L + ++ R + K +LE +K C ++ + ++ ++ NK
Sbjct: 247 ----PDEKLFALLHLCRNFCFKKLLET-SLKKCKISKKKVPLLKKVRMDRENKQTVVFCA 301
Query: 325 ATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEK--DKEYGV- 381
+D S V ++ +A +K +N++K +K+ +
Sbjct: 302 TMKHVEYVVGILHRAG-----------IDCSFVYSQLDATARK---MNIQKFHEKQNNIL 347
Query: 382 ------SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RGVD + V+N P AK +VHR+GR ARAG+SG +IS +
Sbjct: 348 VVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLI 397
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 143 bits (360), Expect = 8e-34
Identities = 117/399 (29%), Positives = 181/399 (45%), Gaps = 65/399 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI +GF PT IQ+ P+AL+ RD+I A TGSGKTLAYL+P + + + Q+
Sbjct: 151 EAIAKLGFTEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD 209
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
D L IL PTRELA Q+ E K + C+ G G ++ L EI
Sbjct: 210 DGPIVL--ILAPTRELAVQIQEESRKFGLRSGVRSTCIY--GGAPKGPQIRDL-RRGVEI 264
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+IATP +L+D+L+ Q N+ R+ +LV+DE D +L G++ + KI + +R QT L
Sbjct: 265 VIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQ--IRPDRQTLLW 322
Query: 208 SATLNDDIQHLKQQFCRSP--AILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT +++ L +QF R P AI+ D + N+ ++I+ ++++ L + K
Sbjct: 323 SATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLL---TLLKQ 379
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+ K LIFV ++ L G + ++ + + R ++ EF ++ A
Sbjct: 380 LMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTA 439
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD GL +V D V D
Sbjct: 440 TD---------------VAARGL-DVKDIKCVVNYD------------------------ 459
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
P T + Y+HRIGRT RAG G++ +F
Sbjct: 460 ------------FPNTLEDYIHRIGRTGRAGAKGMAFTF 486
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 141 bits (355), Expect = 3e-33
Identities = 118/428 (27%), Positives = 185/428 (42%), Gaps = 93/428 (21%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I G+K PT IQ AIP+ LQ RDII A TGSGKT A+LIP++ I K D+
Sbjct: 404 EVIDKCGYKEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRI 462
Query: 88 DEG--ATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS----LL 141
+E +IL PTRELAQQ+ E K K L + + V G + + L
Sbjct: 463 EESDQGPYAIILAPTRELAQQIEEETIKFG-------KPLGIRTVAVIGGISREDQGFRL 515
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL--- 198
EI+IATP +L+D+L+ + + + R ++V+DE D ++ G++ D+ KI E +P+
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Query: 199 ---------------------RKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVN 237
K QT + +AT+ ++ L + + R PA++ +
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIG--SAG 633
Query: 238 KDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSC 297
K ++ Q + E +K I + G +IFVN L LE+ G +C
Sbjct: 634 KPHERVEQKVFLMSESEKRKKLLAILEQG-FDPPIIIFVNQKKGCDVLAKSLEKMGYNAC 692
Query: 298 ILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTV 357
L+ R+ + +L+ATD +++ D S V
Sbjct: 693 TLHGGKGQEQREFALSNLKAGAKDILVATDVAGRG----------------IDIQDVSMV 736
Query: 358 TTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGK 417
+N+D+ + Y+HRIGRT RAGK
Sbjct: 737 ------------------------------------VNYDMAKNIEDYIHRIGRTGRAGK 760
Query: 418 SGISISFV 425
SG++I+F+
Sbjct: 761 SGVAITFL 768
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 141 bits (355), Expect = 3e-33
Identities = 118/428 (27%), Positives = 185/428 (42%), Gaps = 93/428 (21%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I G+K PT IQ AIP+ LQ RDII A TGSGKT A+LIP++ I K D+
Sbjct: 404 EVIDKCGYKEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRI 462
Query: 88 DEG--ATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS----LL 141
+E +IL PTRELAQQ+ E K K L + + V G + + L
Sbjct: 463 EESDQGPYAIILAPTRELAQQIEEETIKFG-------KPLGIRTVAVIGGISREDQGFRL 515
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL--- 198
EI+IATP +L+D+L+ + + + R ++V+DE D ++ G++ D+ KI E +P+
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Query: 199 ---------------------RKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVN 237
K QT + +AT+ ++ L + + R PA++ +
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIG--SAG 633
Query: 238 KDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSC 297
K ++ Q + E +K I + G +IFVN L LE+ G +C
Sbjct: 634 KPHERVEQKVFLMSESEKRKKLLAILEQG-FDPPIIIFVNQKKGCDVLAKSLEKMGYNAC 692
Query: 298 ILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTV 357
L+ R+ + +L+ATD +++ D S V
Sbjct: 693 TLHGGKGQEQREFALSNLKAGAKDILVATDVAGRG----------------IDIQDVSMV 736
Query: 358 TTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGK 417
+N+D+ + Y+HRIGRT RAGK
Sbjct: 737 ------------------------------------VNYDMAKNIEDYIHRIGRTGRAGK 760
Query: 418 SGISISFV 425
SG++I+F+
Sbjct: 761 SGVAITFL 768
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 139 bits (351), Expect = 9e-33
Identities = 129/404 (31%), Positives = 198/404 (48%), Gaps = 41/404 (10%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GFK PT IQ IPL L E RD++ A TGSGKT A++IP+I+ L A+ N
Sbjct: 82 RAIFKKGFKAPTPIQRKTIPLLL-EGRDVVGMARTGSGKTAAFVIPMIEH-LKSTLANSN 139
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
T +IL P RELA Q ++VV+ +++ + + G VS SLL+ P+I
Sbjct: 140 ----TRALILSPNRELALQTVKVVKDFSK--GTDLRSVAIVGG-VSLEEQFSLLSGKPDI 192
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ATP + + L + + ++++V DE D + G+ LT+I LP S QT L
Sbjct: 193 VVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALP--TSRQTLLF 250
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYV--IFKL 265
SATL + + + P +++L+ + + + VK E + LLC + I KL
Sbjct: 251 SATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKL 310
Query: 266 GL---IKGKTLIFVNNIDRGYR-LKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
L ++ + + VNN + R L+L L+ G +S +S L +H VE V +
Sbjct: 311 PLKDNVRPREIGNVNNPKKRKRALELALK--GSESGSPDSTLVFVPTKHHVE----YVSE 364
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
LL+ + +D + N + K L V D
Sbjct: 365 LLV---------------QAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDV---A 406
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
SRG+D +A V+N+D P K +VHR+GRTARAG++G + S V
Sbjct: 407 SRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLV 450
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 139 bits (351), Expect = 9e-33
Identities = 120/466 (25%), Positives = 206/466 (43%), Gaps = 84/466 (18%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++ + PT IQ+ AIP ++ RD+I A TGSGKTLA+L+P+ + ILD + ++ D
Sbjct: 319 LKKFEYSKPTSIQAQAIP-SIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGD- 376
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+ VIL PTRELA Q + K ++ C + G V + + L EI++
Sbjct: 377 -GPIAVILAPTRELAMQTYKEANKFAKPLGLKVAC---TYGGVGISEQIADLKRGAEIVV 432
Query: 150 ATPAKLVDLLDAQD---VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
TP +++D+L A N+ R+ +LV+DE D + G++ + K+ + R QT L
Sbjct: 433 CTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNI--RPDKQTVL 490
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SAT ++ L ++ P + + V + Q V E KFL + +
Sbjct: 491 FSATFPRHMEALARKVLDKPVEILVGGKSVVCSD--ITQNAVICAEHQKFLKLLELLGMY 548
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCI-LNSELPANSRQHIVEEFNKNVYQLLIA 325
+G +++FV+ ++ + L + G S L+ + + R + +F
Sbjct: 549 YEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFK--------- 599
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
G+++V+ ++V +RG+
Sbjct: 600 --------------------TGVIKVLVATSVA-----------------------ARGL 616
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP-------------LKEFG 432
D KN+ V+N+D P + YVHR+GRT RAG+ G + +FV+P + G
Sbjct: 617 DVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAG 676
Query: 433 KHKPSMIKSA----KKDEKILGRIIKQQAKLGFELQPYNFDIKQVE 474
P+ +K+ K + G+ +K K GFE Y +D + E
Sbjct: 677 CKPPADLKAMFERFKSEMAAEGKEVKLGGK-GFEGSGYKYDEGEAE 721
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 139 bits (351), Expect = 9e-33
Identities = 120/466 (25%), Positives = 206/466 (43%), Gaps = 84/466 (18%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++ + PT IQ+ AIP ++ RD+I A TGSGKTLA+L+P+ + ILD + ++ D
Sbjct: 319 LKKFEYSKPTSIQAQAIP-SIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGD- 376
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+ VIL PTRELA Q + K ++ C + G V + + L EI++
Sbjct: 377 -GPIAVILAPTRELAMQTYKEANKFAKPLGLKVAC---TYGGVGISEQIADLKRGAEIVV 432
Query: 150 ATPAKLVDLLDAQD---VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
TP +++D+L A N+ R+ +LV+DE D + G++ + K+ + R QT L
Sbjct: 433 CTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNI--RPDKQTVL 490
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SAT ++ L ++ P + + V + Q V E KFL + +
Sbjct: 491 FSATFPRHMEALARKVLDKPVEILVGGKSVVCSD--ITQNAVICAEHQKFLKLLELLGMY 548
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCI-LNSELPANSRQHIVEEFNKNVYQLLIA 325
+G +++FV+ ++ + L + G S L+ + + R + +F
Sbjct: 549 YEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFK--------- 599
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
G+++V+ ++V +RG+
Sbjct: 600 --------------------TGVIKVLVATSVA-----------------------ARGL 616
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP-------------LKEFG 432
D KN+ V+N+D P + YVHR+GRT RAG+ G + +FV+P + G
Sbjct: 617 DVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAG 676
Query: 433 KHKPSMIKSA----KKDEKILGRIIKQQAKLGFELQPYNFDIKQVE 474
P+ +K+ K + G+ +K K GFE Y +D + E
Sbjct: 677 CKPPADLKAMFERFKSEMAAEGKEVKLGGK-GFEGSGYKYDEGEAE 721
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 139 bits (349), Expect = 2e-32
Identities = 112/400 (28%), Positives = 187/400 (46%), Gaps = 71/400 (17%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A +GFK PT IQ AIP+ L KRD+I A TGSGKT A+ +PVIQ + N
Sbjct: 59 EACEKLGFKTPTPIQQEAIPVVLN-KRDVIGLAQTGSGKTAAFALPVIQEL-------WN 110
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+ V+L PTRELA Q+ E E + S ++ + + G + L++ P +
Sbjct: 111 NPSPFFAVVLAPTRELAYQISEQFE--AIGGSIGVRSV-VIVGGMDMVTQAVALSKKPHV 167
Query: 148 LIATPAKLVDLLD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
L+ TP +L+D L+ + ++ LK+L++DE D +L + + KI + +P + +T L
Sbjct: 168 LVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHER--RTLL 225
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SAT+ ++ L++ P + ++ D LIQ Y+ K Y+++ +
Sbjct: 226 FSATMTSKVEKLQRASLHQPVRVAVSSKFSTVD--TLIQRYLFFP--FKHKDTYLVYLVN 281
Query: 267 LIKGKT-LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+ G + +IF ++ RL ++L G + L+ +L ++R + +F L+A
Sbjct: 282 ELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVA 341
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD LV+VV
Sbjct: 342 TD-----------VAARGLDIPLVDVV--------------------------------- 357
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+N+D+PT +K+Y+HR+GRTARAG++G SI+ V
Sbjct: 358 --------INYDIPTDSKAYIHRVGRTARAGRAGKSIALV 389
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 138 bits (348), Expect = 2e-32
Identities = 126/405 (31%), Positives = 186/405 (45%), Gaps = 80/405 (19%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
QA +++ + PT IQS AIP AL E DII A TGSGKT A+ IP++ + +
Sbjct: 136 QACKNLNYSKPTPIQSKAIPPAL-EGHDIIGLAQTGSGKTAAFAIPILNRLW-------H 187
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSG-NLLKSL--LTEN 144
D+ IL PTRELAQQ+ E + L C+ V G N++ L
Sbjct: 188 DQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCI------VGGMNMMDQARDLMRK 241
Query: 145 PEILIATPAKLVDLLD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQ 203
P I+IATP +L+D L+ + ++ +LKFLV+DE D +L + L +I + +P ++
Sbjct: 242 PHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT- 300
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQT--KLIQYYVKVGEFDKFLLCYV 261
T+L SAT+ I L++ +P ++ NK QT L+Q + V K Y+
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVS----NKYQTVDTLVQTLMVVPGGLKNT--YL 354
Query: 262 IFKLGLIKGKTLI-FVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVY 320
I+ L GKT+I F RL + + L+ +L N R ++ F
Sbjct: 355 IYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLF----- 409
Query: 321 QLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYG 380
K K + V D
Sbjct: 410 --------------------------------------------KAGKRSILVATDV--- 422
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D +V V+N+D+P +KSY+HR+GRTARAG+SG SIS V
Sbjct: 423 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 467
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 137 bits (346), Expect = 4e-32
Identities = 111/402 (27%), Positives = 182/402 (44%), Gaps = 68/402 (16%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF PT IQS P+AL RD++ A TGSGKTLAY++P I I + + + +
Sbjct: 256 GFTKPTAIQSQGWPIALSG-RDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGE--GPI 312
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
++L PTRELAQQ+ VV C EI+ + G+ + L E++IATP
Sbjct: 313 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDL-DRGVEVIIATPG 371
Query: 154 KLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLND 213
+L+D L+ ++ N+ R +LV+DE D +L G++ + KI E+ +R Q + SAT
Sbjct: 372 RLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ--IRPDRQVVMWSATWPK 429
Query: 214 DIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG---EFDKFLLCYV-----IFKL 265
++Q L F +++N +N I+ V++ E + L+C + I
Sbjct: 430 EVQALAGDFLND--YIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNS 487
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
G K ++FV + + ++ G + ++ + N R ++++F +LIA
Sbjct: 488 GNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIA 547
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD L+VE D +Y
Sbjct: 548 TDVASRG--------------------------------------LDVE-DLQY------ 562
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
V+N+D P ++++YVHRIGRT R + G + +F P
Sbjct: 563 -------VINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP 597
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 136 bits (342), Expect = 1e-31
Identities = 134/496 (27%), Positives = 222/496 (44%), Gaps = 94/496 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI ++GFK PT IQ + IP+ L K DI A A+TG+GKT A+ +PV++ ++ +
Sbjct: 231 KAITAMGFKQPTPIQKACIPVGLLGK-DICACAATGTGKTAAFALPVLERLIYKPR---- 285
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
T ++LVPTREL QV V +L FC+ CL + +V ++ L P+I
Sbjct: 286 QAPVTRVLVLVPTRELGIQVHSVTRQLAQFCN-ITTCLAVGGLDVKSQ--EAALRAAPDI 342
Query: 148 LIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
LIATP +L+D L + ++ ++ L++DE D +L ++E + +I + QT L
Sbjct: 343 LIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR--QTML 400
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLI-QYYVKV---GEFDKFLLCYVI 262
SAT+ D+++ L ++P + +N N D + Q ++++ E D+ + +
Sbjct: 401 FSATMTDEVKDLASVSLKNPVRIFVNS---NTDVAPFLRQEFIRIRPNREGDREAIVAAL 457
Query: 263 FKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQL 322
++F + +R+ ++L G++ L+ L R + F +
Sbjct: 458 L-TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 516
Query: 323 LIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVS 382
L+ATD L++E GV
Sbjct: 517 LVATDVAARG--------------------------------------LDIE-----GVK 533
Query: 383 RGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSA 442
++F +P T K YVHR+GRTARAG++G S+S V G+ + M+K
Sbjct: 534 TVINF---------TMPNTIKHYVHRVGRTARAGRAGRSVSLV------GEDERKMLKEI 578
Query: 443 KKDEK--ILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKEL 500
K K + RI+ Q L F ++E +ME AV Q+ EA KE+
Sbjct: 579 VKAAKAPVKARILPQDVILKFR--------DKIE----KMEKDVYAVLQL---EAEEKEM 623
Query: 501 KQELLASEKLKRHFEE 516
+Q KR E+
Sbjct: 624 QQSEAQINTAKRLLEK 639
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 135 bits (341), Expect = 1e-31
Identities = 106/426 (24%), Positives = 196/426 (45%), Gaps = 74/426 (17%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
I S+G++ PT IQ+ AIP A+ RD+I A TGSGKT+A+L+P+ + I D + +
Sbjct: 433 INSLGYEKPTSIQAQAIP-AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGE- 490
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNL-LKSLLTE---NP 145
+ +I+ PTRELA Q+ C +K LN+ + G +K + +
Sbjct: 491 -GPIAIIMTPTRELAVQIFRE-------CKPFLKLLNIRACCAYGGAPIKDQIADLKRGA 542
Query: 146 EILIATPAKLVDLLDAQD---VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSL 202
EI++ TP +++D+L A N+ R +LV+DE D + G++ + +I + R
Sbjct: 543 EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI--RPDR 600
Query: 203 QTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTK-LIQYYVKVGEFDKFLLCYV 261
QT L SAT ++ L ++ + P + + V + + +++ + +F + L
Sbjct: 601 QTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLG 660
Query: 262 IFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
+ +TL+FV+ + L L + G S ++ + R + ++
Sbjct: 661 ELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK----- 715
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
G+ +V+ ++V V
Sbjct: 716 ------------------------AGVFDVLIATSV-----------------------V 728
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKS 441
+RG+D K++ V+N+D P + YVHR+GRT RAG +G++++F+ P +E K+ + K+
Sbjct: 729 ARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQE--KYAVDIAKA 786
Query: 442 AKKDEK 447
K ++
Sbjct: 787 LKMSKQ 792
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 135 bits (340), Expect = 2e-31
Identities = 121/451 (26%), Positives = 198/451 (43%), Gaps = 90/451 (19%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
Q+++++ F PT IQ +IP+ +Q D++ KASTGSGKTLAY IP+++ ++ +
Sbjct: 184 QSLQNLNFLRPTEIQKKSIPVIMQGV-DVMGKASTGSGKTLAYGIPIVEKLISNFSQKNK 242
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLI--VFCSQEIKCLNLSSGNVSGNLLKSLLTENP 145
+ +I PTRELA QV + ++K+ V + L+L+ G + L +N
Sbjct: 243 ---KPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNS 299
Query: 146 -EILIATPAKLVDLLDAQDVNIDR---LKFLVIDEVDLVLTFGYQEDLTKISERLPLR-- 199
+I+IATP + ++LL+ + I R + L++DE D +L G+ ++ KI + L +
Sbjct: 300 GQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERR 359
Query: 200 ----------KSLQTFLMSAT--------------------------LNDDIQHL--KQQ 221
K QT + SAT LN IQHL K
Sbjct: 360 KNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIH 419
Query: 222 FCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDR 281
F P I+ N + +K +++ + ++ ++ L CY + L + G TLIF N ID
Sbjct: 420 FNSKPVIIDTNPE--SKVSSQIKESLIECPPLERDLYCY--YFLTMFPGTTLIFCNAIDS 475
Query: 282 GYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXX 341
+L + L GI + ++S + +R +E F +
Sbjct: 476 VKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQ-------------------SAKQ 516
Query: 342 XXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTT 401
+ V STV + +RG+D V V+++ LP +
Sbjct: 517 KTINHSNPDSVQLSTVLIASDV-----------------AARGLDIPGVQHVIHYHLPRS 559
Query: 402 AKSYVHRIGRTARAGKSGISISFVVPLKEFG 432
Y+HR GRTARAG G+S P + G
Sbjct: 560 TDIYIHRSGRTARAGSEGVSAMICSPQESMG 590
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 135 bits (340), Expect = 2e-31
Identities = 120/504 (23%), Positives = 221/504 (43%), Gaps = 93/504 (18%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++ + ++ P IQ+ A+P+ + RD I A TGSGKTL +++P+++ I D + D
Sbjct: 544 MKKLNYEKPMPIQTQALPI-IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD- 601
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+G+++ PTREL QQ+ + K I+C+ + G+ + S L EI++
Sbjct: 602 -GPIGLVMAPTRELVQQIHSDIRKFSK--PLGIRCVPVYGGSGVAQQI-SELKRGTEIVV 657
Query: 150 ATPAKLVDLL---DAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
TP +++D+L + N+ R+ FLV+DE D + G++ +T+I + +R QT L
Sbjct: 658 CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQN--IRPERQTVL 715
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLND-DEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT ++ L ++ P +++ VNKD T+L++ E D+FL +
Sbjct: 716 FSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVR---PESDRFLRLLELLGE 772
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
KGK L+FV + ++ L + + L+ R+ + +F +V LLIA
Sbjct: 773 WSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIA 832
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
T +V + K+ + +N + Y
Sbjct: 833 T-----------------------------SVAARGLDVKELELVVNFDAPNHY------ 857
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKKD 445
+ YVHR+GRT RAG+ G +++F+ ++ K+ P ++K+ +
Sbjct: 858 -----------------EDYVHRVGRTGRAGRKGCAVTFI--SEDDAKYAPDLVKALELS 898
Query: 446 EKILGRIIKQQAKLGFELQPYNFDIKQV-EGFRYRMEDGFRAVTQVAIREARIK------ 498
E QP D+K + +GF +++ G + K
Sbjct: 899 E-----------------QPVPDDLKALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEE 941
Query: 499 ELKQELLASEKLKRHFEENPHDLE 522
E+++ ++ + FEE+ D E
Sbjct: 942 EVRKAAKKAQAKEYGFEEDKSDSE 965
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 135 bits (339), Expect = 2e-31
Identities = 113/404 (27%), Positives = 188/404 (45%), Gaps = 73/404 (18%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
AI+ G+K PT IQ +PL L D++A A TGSGKT A+LIP+++ + H
Sbjct: 42 AIKKKGYKVPTPIQRKTMPLILSGV-DVVAMARTGSGKTAAFLIPMLEKLKQHVP----- 95
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSL---LTENP 145
+G +IL PTR+LA+Q L+ ++L F + L V G+ ++ LT+ P
Sbjct: 96 QGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLL------VGGDSMEDQFEELTKGP 149
Query: 146 EILIATPAKLVDLL-DAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
+++IATP +L+ LL + D+ + ++++V DE D + G+ E L +I +L ++ QT
Sbjct: 150 DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLS--ENRQT 207
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKF-LLCYVIF 263
L SATL + + R P +++L D NK L ++ V +K+ L Y++
Sbjct: 208 LLFSATLPSALAEFAKAGLREPQLVRL--DVENKISPDLKLSFLTVRPEEKYSALLYLVR 265
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
+ +TLIFV+ + + + I+ + ++ ++R+ V F LL
Sbjct: 266 EHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLL 325
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
+V D +R
Sbjct: 326 ---------------------------IVTDIA-------------------------AR 333
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
G+D + V+N+D P K +VHR+GR ARAG++G + SFV P
Sbjct: 334 GIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTP 377
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 134 bits (338), Expect = 3e-31
Identities = 103/403 (25%), Positives = 187/403 (45%), Gaps = 65/403 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ +R +GF+ PT IQ AIP A+ RD+I A TGSGKTLA+++P+ + ILD +
Sbjct: 523 EVLRRLGFEKPTPIQCQAIP-AIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDG 581
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
D + +I+ PTREL Q+ + + K C+ +G +S + + L EI
Sbjct: 582 D--GAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTG-ISEQIAE--LKRGAEI 636
Query: 148 LIATPAKLVDLLDAQD---VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
++ TP +++D+L A N+ R+ ++V+DE D + G++ + +I + + R QT
Sbjct: 637 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNV--RPDRQT 694
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
+ SAT ++ L ++ + P + + V + + Q+ V + + KF +
Sbjct: 695 VMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVE--QHVVILNDDAKFFKLLELLG 752
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+ G ++FV D+ ++L ++ + P S +++F++
Sbjct: 753 IYQEAGSIIVFV---DKQENADILLRD------LMKASYPCMSLHGGIDQFDR------- 796
Query: 325 ATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRG 384
DST+ + K + +V +RG
Sbjct: 797 -----------------------------DSTIIDFKSGKVRLLIATSV-------AARG 820
Query: 385 VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
+D K++ V+N+D+P + YVHR GRT RAGK G + +F+ P
Sbjct: 821 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 134 bits (337), Expect = 4e-31
Identities = 109/394 (27%), Positives = 182/394 (45%), Gaps = 61/394 (15%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLG 94
F PT IQ+ P+AL D++ A TGSGKTL+YL+P I I +H+ + +G +
Sbjct: 114 FTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGP-IC 170
Query: 95 VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAK 154
++L PTRELAQQV +V + C + C+ G G ++ L EI IATP +
Sbjct: 171 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIY--GGAPKGPQIRDL-ERGVEICIATPGR 227
Query: 155 LVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDD 214
L+D L+ N+ R +LV+DE D +L G++ + KI +++ R QT + SAT +
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI--RPDRQTLMWSATWPKE 285
Query: 215 IQHLKQQFCRSPAILKLNDDEVNKDQTKL-IQYYVKVGEFDKFLLCYVIFKLGLIKGKTL 273
++ L + F + + + E++ + L I E D+ L+ + + + KT+
Sbjct: 286 VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTI 345
Query: 274 IFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXX 333
+FV R L + + G + ++ + R ++ EF
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEF------------------ 387
Query: 334 XXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACV 393
K K + + D SRG+D ++V V
Sbjct: 388 -------------------------------KHGKAPILIATDV---ASRGLDVEDVKFV 413
Query: 394 LNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
+N+D P +++ Y+HRIGRTAR+ K+G + +F P
Sbjct: 414 INYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 133 bits (334), Expect = 9e-31
Identities = 114/405 (28%), Positives = 178/405 (43%), Gaps = 69/405 (17%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTIL--------DH 81
I+ F PT +Q +IP+ + + RD++A A TGSGKT +L P+ + +
Sbjct: 169 IKLASFTKPTPVQKYSIPI-VTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEK 227
Query: 82 KKADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLL 141
++ + +G ++L PTRELA Q+ E K + S C+ + G GN ++ +
Sbjct: 228 AQSFYSRKGYPSALVLAPTRELATQIFEEARKF-TYRSWVRPCV-VYGGAPIGNQMREV- 284
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISER--LPLR 199
++L+ATP +L DLL+ V++ +K+LV+DE D +L G++ + I E +P
Sbjct: 285 DRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSV 344
Query: 200 KSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLC 259
++ QT + SAT DIQHL + F + L + V + Q + V + DK
Sbjct: 345 ENRQTLMFSATFPVDIQHLARDFLDNYIFLSVG--RVGSTSENITQRILYVDDMDKKSAL 402
Query: 260 YVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNV 319
+ KG TLIFV +L L K+ ++ + R+ + F N
Sbjct: 403 LDLLSAEH-KGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN- 460
Query: 320 YQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEY 379
V D V T A
Sbjct: 461 --------------------------------VADILVATAVAA---------------- 472
Query: 380 GVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
RG+D NV V+N+DLP+ YVHRIGRT RAG +G++ SF
Sbjct: 473 ---RGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSF 514
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 133 bits (334), Expect = 9e-31
Identities = 106/394 (26%), Positives = 182/394 (45%), Gaps = 67/394 (17%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
IR GF PT IQ+ P+A+ RD++ A TGSGKTLAY++P + I + + ++ D
Sbjct: 165 IRKQGFAKPTAIQAQGWPIAMSG-RDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGD- 222
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQ-EIKCLNLSSGNVSGNLLKSLLTENPEIL 148
+ ++L PTRELAQQ+ +V I F S ++ + G G + L EI+
Sbjct: 223 -GPIALVLAPTRELAQQIQQVA---IEFGSNTHVRNTCIFGGAPKGQQARDL-ERGVEIV 277
Query: 149 IATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMS 208
IATP +L+D L+ ++ R +LV+DE D +L G++ + KI ++ +R Q + S
Sbjct: 278 IATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQ--IRPDRQVLMWS 335
Query: 209 ATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLI 268
AT +++ L ++F + +++N ++ I V V + ++ L+ + +
Sbjct: 336 ATWPKEVRQLAEEFLNN--YIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDIS 393
Query: 269 ---KGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+ KT+IFV R + + + G ++C ++ + R ++ F + +L+A
Sbjct: 394 AENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVA 453
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD GL VDD
Sbjct: 454 TD---------------VAARGL--DVDD------------------------------- 465
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSG 419
V V+N+D P+ ++ YVHRIGRT R+ +G
Sbjct: 466 ----VKFVINYDYPSNSEDYVHRIGRTGRSNNTG 495
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 132 bits (333), Expect = 1e-30
Identities = 96/304 (31%), Positives = 159/304 (51%), Gaps = 23/304 (7%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A +G+ PT IQ AIPLALQ RDII A TGSGKT A+ +P++ +L+ +
Sbjct: 37 EACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETPQ---- 91
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
++L PTRELA Q+ E E L + + G + L + P I
Sbjct: 92 ---RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVI---VGGIDSMSQSLALAKKPHI 145
Query: 148 LIATPAKLVDLLD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+IATP +L+D L+ + N+ LK+LV+DE D +L ++ ++ KI + +P + +TFL
Sbjct: 146 IIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP--RDRKTFL 203
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQT--KLIQYYVKVGEFDKFLLCYVIFK 264
SAT+ +Q L++ ++P ++ +K QT KL QYY+ + KF Y+++
Sbjct: 204 FSATMTKKVQKLQRAALKNPVKCAVS----SKYQTVEKLQQYYIFIP--SKFKDTYLVYI 257
Query: 265 LGLIKGKT-LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
L + G + +IF + + R L+L G + L+ ++ + R + +F +L
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317
Query: 324 IATD 327
+ATD
Sbjct: 318 LATD 321
Score = 62.4 bits (150), Expect = 2e-09
Identities = 27/44 (61%), Positives = 37/44 (83%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
SRG+D +V V+NFD+PT +K Y+HR+GRTARAG+SG +I+FV
Sbjct: 324 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 367
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 132 bits (333), Expect = 1e-30
Identities = 113/393 (28%), Positives = 183/393 (45%), Gaps = 65/393 (16%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLG 94
F+ PT+IQS + P+A+ RDII+ A TGSGKTLA+++P + I + + A L
Sbjct: 149 FQKPTVIQSISWPIAMSG-RDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVL- 206
Query: 95 VILVPTRELAQQVLEVVEKLIVFC-SQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
+L+PTRELAQQV EV I FC S +K L G G + L +I++ATP
Sbjct: 207 -VLLPTRELAQQVQEVS---IDFCHSLGLKMTCLFGGASKGPQARDL-ERGVDIVVATPG 261
Query: 154 KLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLND 213
+L+D LD N+ + +LV+DE D +L G++ + KI + +R QT + SAT
Sbjct: 262 RLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQ--IRPDRQTLMFSATWPK 319
Query: 214 DIQHLKQQFCRSPAILKLNDDEV--NKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGK 271
+++ L F + A L + E+ N + T+++ + + K L+ + + + K
Sbjct: 320 EVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAK-LMELLNHIMNQKECK 378
Query: 272 TLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXX 331
T+IFV + L + + G + ++ + R +++EF +++ATD
Sbjct: 379 TIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATD---- 434
Query: 332 XXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVA 391
GL VDD +
Sbjct: 435 -----------VAARGL--DVDD-----------------------------------IK 446
Query: 392 CVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
V+N+D P ++ YVHRIGRT R+ K G + +F
Sbjct: 447 FVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTF 479
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 132 bits (332), Expect = 1e-30
Identities = 110/400 (27%), Positives = 181/400 (44%), Gaps = 66/400 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIP-VIQTILDHKKADQ 86
+ I +GF P+ IQS A P+ LQ D+I A TG+GKTLA+L+P +I T +++ +
Sbjct: 296 EEITKMGFSKPSPIQSQAWPILLQG-HDMIGIAQTGTGKTLAFLLPGMIHT--EYQSTPR 352
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
G ++L PTRELA Q+ E+ K F + C+ G + N+ S L E
Sbjct: 353 GTRGGANVLVLAPTRELALQI-EMEVKKYSFRGMKAVCVY---GGGNRNMQISDLERGAE 408
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
I+I TP +L DL+ A +++ + +LV+DE D +L G++ + K+ L +R QT +
Sbjct: 409 IIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVM--LDIRPDRQTIM 466
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGE--FDKFLLCYVIFK 264
SAT ++ L Q + ++P +++ ++ T ++ +K+ E DKF K
Sbjct: 467 TSATWPPGVRRLAQSYMKNP--IQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVK 524
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
K +IF R L L G + ++ R+ + +
Sbjct: 525 NMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKS------- 577
Query: 325 ATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRG 384
G+V ++ + V SRG
Sbjct: 578 ----------------------GVVRILVATDVA-----------------------SRG 592
Query: 385 VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+D +++ V+N+D P + YVHR+GRT RAG+ G SISF
Sbjct: 593 LDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISF 632
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 130 bits (326), Expect = 7e-30
Identities = 110/418 (26%), Positives = 188/418 (44%), Gaps = 66/418 (15%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ ++ GF PT IQS P+A++ RD+I A TGSGKTL+YL+P I +
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKG-RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHG 170
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
D L +L PTRELA Q+ + K S +IK + G G ++ L + EI
Sbjct: 171 DGPIVL--VLAPTRELAVQIQQEASKF--GSSSKIKTTCIYGGVPKGPQVRDL-QKGVEI 225
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+IATP +L+D++++ + N+ R+ +LV+DE D +L G+ + KI +R QT
Sbjct: 226 VIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSH--IRPDRQTLYW 283
Query: 208 SATLNDDIQHLKQQFCRSP--AILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT +++ L ++F +P I+ +D + N+ +++ + E K+ + +
Sbjct: 284 SATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDV---ISESQKYNKLVKLLED 340
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+ + L+F++ ++ L G + ++ + R ++ EF ++ A
Sbjct: 341 IMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTA 400
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD L+V KD +Y
Sbjct: 401 TDVAARG--------------------------------------LDV-KDVKY------ 415
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISIS-FVVPLKEFGKHKPSMIKSA 442
V+N+D P + + YVHRIGRT RAG G + + F V F K ++++ A
Sbjct: 416 -------VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEA 466
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 129 bits (325), Expect = 1e-29
Identities = 117/436 (26%), Positives = 195/436 (43%), Gaps = 86/436 (19%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDH--KKADQNDEGA 91
G PT IQ IP+AL RD+I ASTGSGKT+ +++P++ L+ K EG
Sbjct: 209 GIVTPTAIQIQGIPVALSG-RDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGP 267
Query: 92 TLGVILVPTRELAQQVLEVVEKLIVFCSQ----EIKCLNLSSGNVSGNLLKSLLTENPEI 147
G+I+VP+RELA+Q+ +++ ++ + E++ G G K + + I
Sbjct: 268 -FGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDV-RDGIHI 325
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ATP +L D+L + +N++ ++LV+DE D +L G+++++ I ++ QT L
Sbjct: 326 VVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQR--QTLLF 383
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SAT+ IQ + P + +N ++Q V +K L V+ L
Sbjct: 384 SATMPRKIQFFAKSALVKPIV--VNVGRAGAASLNVLQELEFVRSENK--LVRVLECLQK 439
Query: 268 IKGKTLIFVN---NIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
K LIF ++D Y LV G++ ++ + R +E F KN +L+
Sbjct: 440 TSPKVLIFAEKKVDVDNIYEYLLVK---GVEVASIHGGKDQSDRHAGIEAFRKNEKDVLV 496
Query: 325 ATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRG 384
ATD V +K G
Sbjct: 497 ATD-----------------------------VASK-----------------------G 504
Query: 385 VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP-------------LKEF 431
+DF+ + V+NFD+P ++YVHRIGRT R+G+ G++ +F+ L E
Sbjct: 505 LDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEA 564
Query: 432 GKHKPSMIKSAKKDEK 447
G+ P +K DE+
Sbjct: 565 GQELPEFLKMLAGDEE 580
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 127 bits (319), Expect = 5e-29
Identities = 90/307 (29%), Positives = 159/307 (51%), Gaps = 19/307 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDH-----K 82
+A +G+K+P+ IQ+ A+P AL+ K D+I A TGSGKT A+ IP++Q +L++
Sbjct: 22 KACERLGWKNPSKIQAEALPFALEGK-DVIGLAQTGSGKTGAFAIPILQALLEYVYDSEP 80
Query: 83 KADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLT 142
K + + A +L PTRELA Q+ E E L S ++C L G + ++ +
Sbjct: 81 KKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS--LRCAVLVGGI---DRMQQTIA 135
Query: 143 ENPEILIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS 201
+ATP +L D + D + ++ LK+LV+DE D +L +++ L +I E +PL +
Sbjct: 136 LGKRPHVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLER- 194
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYV 261
+TFL SAT+ ++ L++ R+P ++ D K +V K+ CY+
Sbjct: 195 -KTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAA----KYKDCYL 249
Query: 262 IFKLG-LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVY 320
++ L + + ++IF D L LVL G ++ ++ ++ + R + +F
Sbjct: 250 VYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGEC 309
Query: 321 QLLIATD 327
+L+ TD
Sbjct: 310 NILVCTD 316
Score = 63.2 bits (152), Expect = 1e-09
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
SRG+D +V V+N+D+PT +K Y+HR+GRTARAG+SG+ IS V
Sbjct: 319 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV 362
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 127 bits (318), Expect = 6e-29
Identities = 127/509 (24%), Positives = 217/509 (41%), Gaps = 101/509 (19%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A G+ PT IQ + IP+AL K DI A A+TG+GKT A+++P+++ ++ K
Sbjct: 161 KACSGAGYSDPTPIQQACIPVALTGK-DICACAATGTGKTAAFVLPILERMIYRPKG--- 216
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
T ++LVPTRELA QV +V KL F E+ C L +G + ++ L P++
Sbjct: 217 -ASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEV-C--LCAGGLDLKAQEAALRSGPDV 272
Query: 148 LIATPAKLVDLL-------------------------DAQDVNIDRLKFLVIDEVDLVLT 182
++ATP +L+D L + I + LV+DE D +L
Sbjct: 273 VVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLE 332
Query: 183 FGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTK 242
+++ + ++ ++ QT L SAT+ ++I L + P + +N++ K
Sbjct: 333 EAFRDQMNELIRL--CAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINEN--TDTALK 388
Query: 243 LIQYYVKV---GEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCIL 299
L Q ++++ E D+ + + + T++FV R++++L GIK +
Sbjct: 389 LRQEFIRIRAGRETDREAMVAALV-TRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQM 447
Query: 300 NSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTT 359
S L R + +F K +L++TD GL D V T
Sbjct: 448 QSSLTQGQRIESLSKFKKAEIDVLVSTD---------------LASRGL----DIEGVQT 488
Query: 360 KDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSG 419
N K K Y+HR+GRTARAGK+G
Sbjct: 489 VINMNMPKSIK---------------------------------QYIHRVGRTARAGKAG 515
Query: 420 ISISFVVPLKEFGKHKPSMIKSAKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYR 479
SIS V G+ + ++K R +KQ+ ++ Y I ++E +
Sbjct: 516 RSISLV------GEDERKLLKEIVNSN--ADRTLKQRLVAPEVVEAYRRRIDELEETIQQ 567
Query: 480 MEDGFRAVTQVAIREARIKELKQELLASE 508
+++ RA ++ I EA + + + L E
Sbjct: 568 IDEEDRAEKELRIAEASMAKTQNALEVGE 596
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 127 bits (318), Expect = 6e-29
Identities = 109/411 (26%), Positives = 184/411 (44%), Gaps = 68/411 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+R + PT IQ+ A+P AL RDII A TGSGKT A++ P++ ++D K+
Sbjct: 282 KAVRKAEYTQPTPIQAQAVPTALSG-RDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPG 340
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
D +G+IL PTREL+ Q+ +K + + C G S L + EI
Sbjct: 341 D--GPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCY---GGGSKWEQSKALEQGAEI 395
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ATP +++D++ + N+ R+ FLV+DE D + G++ + I +R Q +
Sbjct: 396 IVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNH--VRPDRQCLMF 453
Query: 208 SATLNDDIQHLKQQFCRSPAILKLND-DEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SAT I+ L + P + D +E N+D T+ + + + +LLC+++ L
Sbjct: 454 SATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLS 513
Query: 267 LIKGKTLIFV-NNID-RGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+G LIFV +D L+++++ +L+ ++ R ++ +F + +L+
Sbjct: 514 --EGSVLIFVTKKVDAETVSNNLLIKEY--NCLLLHGDMDQADRNKVITQFKRKECDILV 569
Query: 325 ATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRG 384
ATD GL ++ V D A+
Sbjct: 570 ATD---------------VAARGL-DIPHIRNVVNYDTAR-------------------- 593
Query: 385 VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPL-KEFGKH 434
D+ T + HRIGRT RAG+ G + + V KEF H
Sbjct: 594 ------------DIET----HTHRIGRTGRAGEKGNAYTLVTDKDKEFAGH 628
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 126 bits (316), Expect = 1e-28
Identities = 106/395 (26%), Positives = 181/395 (44%), Gaps = 74/395 (18%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
G PT +Q IP L D+IA + TGSGKTLA+++P++ +L ++
Sbjct: 20 GITRPTEVQRQVIPAVLGGG-DVIAVSQTGSGKTLAFVLPIVSHLLQKNRS-------FY 71
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIK-CLNLSSGNVSGNLLKSLLTENPEILIATP 152
+++ PTREL+ Q+ E +F + ++ CL + N N+ + L++ P +++ TP
Sbjct: 72 CLVVAPTRELSSQIAECFN---MFQATGLRVCLLVGGANF--NVQANQLSKRPHVVVGTP 126
Query: 153 AKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATL 211
++ + +L + +R++ V+DE D + EDL I L R+ QT L +AT+
Sbjct: 127 GRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSL--REKRQTLLFTATM 184
Query: 212 NDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGK 271
+D+I L + P ++ E + L +YY+ V K+ ++ L + +G
Sbjct: 185 SDEISKLSSSILKRPKTIRTA--EKYETVPALKEYYLFVAM--KWKNSALVELLEMSQGM 240
Query: 272 TLI-FVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTX 330
++I FV+ + L L + G S L+ EL R+ + F
Sbjct: 241 SVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSF--------------- 285
Query: 331 XXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNV 390
K+ + NV + G SRG+D +V
Sbjct: 286 ------------------------------------KESRFNVLVCTDLG-SRGLDISHV 308
Query: 391 ACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
V+NFD+P + K Y+HR+GRTARAG+SG +I+ V
Sbjct: 309 DLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLV 343
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 125 bits (314), Expect = 2e-28
Identities = 91/303 (30%), Positives = 158/303 (52%), Gaps = 15/303 (4%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ + ++GF+ PT IQ IPLAL K DI+ A TGSGKT A+++P+++ +L K
Sbjct: 272 KGLSNLGFEVPTQIQDKTIPLALLGK-DIVGAAVTGSGKTAAFIVPILERLLYRPK---- 326
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
T +IL PTRELA Q V K+ F + + CL + G +S L + L + P+I
Sbjct: 327 KVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCI--GGLSLKLQEQELRKRPDI 383
Query: 148 LIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+IATP + +D + ++Q ++ ++ +V+DE D +L G+ ++L +I + P KS QT L
Sbjct: 384 VIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACP--KSRQTML 441
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL- 265
SAT+ D + L + P +++ D L Q +V+V + L ++ L
Sbjct: 442 FSATMTDKVDDLIRLSLNRP--VRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLC 499
Query: 266 -GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
L +T+IF + ++++++ + + ++ L R +E+F L+
Sbjct: 500 KELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLL 559
Query: 325 ATD 327
ATD
Sbjct: 560 ATD 562
Score = 68.6 bits (166), Expect = 3e-11
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 19/138 (13%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKS 441
SRG+D K + V+N++ P T + Y+HR+GRTARAG+SG +I+ +
Sbjct: 565 SRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITL----------------A 608
Query: 442 AKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKELK 501
+ D K+L + K + +L N D +VE F +E+ V +V E + +ELK
Sbjct: 609 GEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELK 668
Query: 502 ---QELLASEKLKRHFEE 516
++L E + ++ +E
Sbjct: 669 IAERDLKKGENIMKYGDE 686
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 125 bits (314), Expect = 2e-28
Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 15/303 (4%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
IR G+K PT IQ+ P+A+ + + A TGSGKTL Y++P I I + + + D
Sbjct: 154 IRRQGYKAPTAIQAQGWPIAMSGS-NFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGD- 211
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+ ++L PTRELAQQ+ +V + S ++ + G G ++ L EI+I
Sbjct: 212 -GPIALVLAPTRELAQQIQQVATEF--GSSSYVRNTCVFGGAPKGGQMRDL-QRGCEIVI 267
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSA 209
ATP +L+D L A N+ R +LV+DE D +L G++ + KI + +R QT + SA
Sbjct: 268 ATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQ--IRPDRQTLMWSA 325
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKV-GEFDK----FLLCYVIFK 264
T +++ L + F + +++N + I+ V V EF K L I+
Sbjct: 326 TWPKEVKQLAEDFLGN--YIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 383
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
GK +IFV R L + FG++ ++ + + R ++ EF +L+
Sbjct: 384 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 443
Query: 325 ATD 327
ATD
Sbjct: 444 ATD 446
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 125 bits (313), Expect = 2e-28
Identities = 108/411 (26%), Positives = 189/411 (45%), Gaps = 41/411 (9%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
I+ GF+ PT IQ IPL LQ RDI+ A TGSGKT A+++P+++ + H + +
Sbjct: 152 IKRKGFRQPTPIQRKTIPLILQS-RDIVGMARTGSGKTAAFILPMVEKLKSH-----SGK 205
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
VIL P+RELA Q V + E++ + L+ G+ ++T NP+++I
Sbjct: 206 IGARAVILSPSRELAMQTFNVFKDFAR--GTELRSVLLTGGDSLEEQFGMMMT-NPDVII 262
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSA 209
ATP + + L ++++ ++++V DE D + G+QE L ++ LP + QT L SA
Sbjct: 263 ATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTR--QTLLFSA 320
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYV--IFKLGL 267
TL + + + +P +++L+ + + +++ K + + LL + I K+ L
Sbjct: 321 TLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPL 380
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVY--QLLIA 325
+ L + N + + N RQ F K + Q + A
Sbjct: 381 ATSEQLQKLQNSNNEAD---------------SDSDDENDRQKKRRNFKKEKFRKQKMPA 425
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTV-------TTKDNAKKQKKPKLNVEKDKE 378
++ + +++ D T +A+K++
Sbjct: 426 ANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSI 485
Query: 379 YGVS----RGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
V+ RGVD +A V+N+ LP ++K +VHR+GRTARAG G + S V
Sbjct: 486 LVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIV 536
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 125 bits (313), Expect = 2e-28
Identities = 100/402 (24%), Positives = 180/402 (43%), Gaps = 67/402 (16%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++ G PT IQ +P+ L RD+I A TGSGKTL +++P+I L +
Sbjct: 161 LKEKGIVQPTPIQVQGLPVILAG-RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAA 219
Query: 90 G-ATLGVILVPTRELAQQVLEVVEKLIVFCSQE----IKCLNLSSGNVSGNLLKSLLTEN 144
G +G+I+ P+RELA+Q EVVE+ + + ++ L L G + ++
Sbjct: 220 GEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSL-LCIGGIDMRSQLEVVKRG 278
Query: 145 PEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
I++ATP +L D+L + +++D ++L +DE D ++ G+++D+ ++ + + QT
Sbjct: 279 VHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDH--FKSQRQT 336
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKL-NDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIF 263
L SAT+ IQ + P + + N D + ++Y + + + Y++
Sbjct: 337 LLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK-----IVYLLE 391
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
L LIF N + L G+++ ++ R++ + F +L
Sbjct: 392 CLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVL 451
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
+ATD V +K
Sbjct: 452 VATD-----------------------------VASK----------------------- 459
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
G+DF ++ V+N+D+P ++YVHRIGRT R GK+GI+ +F+
Sbjct: 460 GLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 501
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 124 bits (312), Expect = 3e-28
Identities = 111/404 (27%), Positives = 176/404 (43%), Gaps = 73/404 (18%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
IR + PT IQ +P+AL RD+I A TGSGKT A++ P++ I+D K+ + D
Sbjct: 149 IRKSEYTQPTPIQCQGVPVALSG-RDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGD- 206
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGN----LLKSLLTENP 145
+ VI+ PTREL QQ+ C + K NL S V G L E
Sbjct: 207 -GPIAVIVCPTRELCQQIHAE-------CKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA 258
Query: 146 EILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTF 205
EI++ TP +L+D + + N+ R+ +LV DE D + G++ + I+ +R QT
Sbjct: 259 EIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH--VRPDRQTL 316
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLND-DEVNKDQTKLIQ-YYVKVGEFDKFLLCYVIF 263
L SAT I+ L + P + D E N+D T++++ + +++ V F
Sbjct: 317 LFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEF 376
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
G L+FV L L+Q G +L+ ++ + R ++ +F K +L
Sbjct: 377 ---TSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 433
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
+ATD GL D ++ T N Y V+R
Sbjct: 434 VATD---------------VAARGL----DIPSIKTVIN----------------YDVAR 458
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
+D ++ HRIGRT RAG+ G++ + + P
Sbjct: 459 DID-----------------THTHRIGRTGRAGEKGVAYTLLTP 485
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 124 bits (312), Expect = 3e-28
Identities = 117/504 (23%), Positives = 212/504 (41%), Gaps = 122/504 (24%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++ + ++ P IQ+ A+P+ + RD I A TGSGKTL +++P+++ I D + D
Sbjct: 411 LKKLNYEKPMPIQAQALPI-IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD- 468
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+G+++ PTREL QQ+ + K + I C+ + G+ + S L EI++
Sbjct: 469 -GPIGLVMAPTRELVQQIYSDIRKFSK--ALGIICVPVYGGSGVAQQI-SELKRGTEIVV 524
Query: 150 ATPAKLVDLL---DAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
TP +++D+L + N+ R+ +LV+DE D + G++ +T+I + +R QT L
Sbjct: 525 CTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN--IRPDRQTVL 582
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLND-DEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT ++ L ++ P +++ VNKD T+L++ + F + L +
Sbjct: 583 FSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLL---ELLGE 639
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
KGK L+FV S++ + +F +V LLIA
Sbjct: 640 WYEKGKVLVFV-----------------------------RSQEKSISDFKSDVCNLLIA 670
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
T +V + K+ + +N + Y
Sbjct: 671 T-----------------------------SVAARGLDVKELELVVNFDAPNHY------ 695
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKKD 445
+ YVHR+GRT RAG+ G +++F+ ++ K+ P ++K+ +
Sbjct: 696 -----------------EDYVHRVGRTGRAGRKGCAVTFI--SEDDAKYAPDLVKALELS 736
Query: 446 EKILGRIIKQQAKLGFELQPYNFDIKQV-EGFRYRMEDGFRAVTQVAIREARIK------ 498
E QP D+K V EGF +++ G + K
Sbjct: 737 E-----------------QPVPDDVKAVAEGFMAKVKQGIEQAHGTGYGGSGFKFNEEED 779
Query: 499 ELKQELLASEKLKRHFEENPHDLE 522
E+++ ++ + FEE D E
Sbjct: 780 EVRKAAKKAQAKEYGFEEEKSDSE 803
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 124 bits (311), Expect = 4e-28
Identities = 115/436 (26%), Positives = 195/436 (44%), Gaps = 47/436 (10%)
Query: 33 IGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGAT 92
+ + T +Q IP LQ K D++ ++ TGSGKTLAY +P+++ + + Q +G
Sbjct: 346 LSIRELTSVQQKTIPEVLQGK-DVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDG-V 403
Query: 93 LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATP 152
L +++VPTREL Q E+++KL+ + + L G S K+ L + ILI TP
Sbjct: 404 LALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLL--GGESRKSEKARLRKGINILIGTP 461
Query: 153 AKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS---------L 202
+LVD LL + +L+FL++DE D +L GY+ D+ ++ E + +++ L
Sbjct: 462 GRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQL 521
Query: 203 QTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVK-----VGEFDKFL 257
Q L+SATL +Q L ++P + N DE K Y K + E D L
Sbjct: 522 QRMLLSATLTSQVQQLAGLTLKNPLYID-NSDEAASAALKSKDGYQKETIEALLEVDDGL 580
Query: 258 LCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNK 317
Y G++ + ++ + +L+LV S +L E+ A+ +Q F
Sbjct: 581 GEYQEDVTGVLSIPENLQLSYVVVPPKLRLV-----ALSSLLAKEVDASPKQFKAIVFMS 635
Query: 318 NVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDK 377
+ D G + DD + + K + ++
Sbjct: 636 TTEMVNFHHDMLNEALTRRVLDEEDEQEKG--DSDDDGDIPLLQGLRFFKLHGSMTQTER 693
Query: 378 EYGVSRG------------------VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSG 419
+ GV RG +D ++ V+ + P T +VHR+GRTARAG+ G
Sbjct: 694 Q-GVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKG 752
Query: 420 ISISFVVPLK-EFGKH 434
++ F+ P + +F +H
Sbjct: 753 RAVLFLTPSEAQFVRH 768
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 124 bits (310), Expect = 5e-28
Identities = 112/408 (27%), Positives = 176/408 (42%), Gaps = 79/408 (19%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++++ PT IQ I L E R+ I A TGSGKT A+ +P+I+ D
Sbjct: 22 LKALAIYEPTDIQEGVIAQIL-EGRNCIGGAKTGSGKTAAFALPIIEKW-------SKDP 73
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNL---LKSL-LTENP 145
+IL PTRELA Q+ E L LNL + G + +S+ L++ P
Sbjct: 74 SGIFALILTPTRELAIQIDEQFAALGAN-------LNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 146 EILIATPAKLVDLLDAQD----VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS 201
+++ATP +L DL+ + + R+KFLV+DE D +L+ + +DL LP +
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASED 186
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPA----ILKLNDDEVNKDQTKLIQYYVKVGEFDKFL 257
QT L +AT+ D I+ LK Q ++ + ++ D ++ T Y + +
Sbjct: 187 RQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAY 246
Query: 258 LCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNK 317
L +++ K +IFVN + +L ++ L+SE+ R + + F
Sbjct: 247 LVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRF-- 304
Query: 318 NVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDK 377
+ + K+ V D
Sbjct: 305 -----------------------------------------------RAEAAKILVATDV 317
Query: 378 EYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
SRG+D +V V+NFDLP Y+HR+GRTARAG+SG SIS V
Sbjct: 318 ---ASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIV 362
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 123 bits (309), Expect = 7e-28
Identities = 107/402 (26%), Positives = 175/402 (42%), Gaps = 63/402 (15%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDH-KKADQ 86
+ ++ G HPT IQ IP L RD+I A TGSGKTL + +PVI L+ K+
Sbjct: 194 RGLKKKGIHHPTPIQIQGIPTILSG-RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPF 252
Query: 87 NDEGATLGVILVPTRELAQQ---VLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTE 143
+ G+I+ P+RELA+Q +LE +L+ S + L G +S +
Sbjct: 253 SKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRH 312
Query: 144 NPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQ 203
+++ATP +L+DLL + V++D ++L +DE D ++ G++ D+ I + Q
Sbjct: 313 GVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY--FKGQRQ 370
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIF 263
T L SAT+ IQ+ + P + +N +IQ V E K + Y++
Sbjct: 371 TLLFSATMPKKIQNFAKSALVKP--VTINVGRAGAASLDVIQEVEYVKEEAK--MVYLLE 426
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
L LIF + L G+++ ++ R +E F + +L
Sbjct: 427 CLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVL 486
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
+ATD V +K
Sbjct: 487 VATD-----------------------------VASK----------------------- 494
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
G+DF + V+N+D+P ++YVHRIGRT R+G +GI+ +F+
Sbjct: 495 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 123 bits (309), Expect = 7e-28
Identities = 108/389 (27%), Positives = 171/389 (43%), Gaps = 64/389 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI+ +GF + T IQ +I L E RD++A A TGSGKTLA+LIP ++ I+ + +N
Sbjct: 192 KAIKEMGFTNMTEIQHKSIR-PLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRN 250
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G +IL PTRELA Q V+++L+ + + L G + + L I
Sbjct: 251 GTGV---LILSPTRELAMQTFGVLKELM---THHVHTYGLIMGGSNRSAEAQKLGNGINI 304
Query: 148 LIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
++ATP +L+D + + L+ LVIDE D +L G++E+L +I + LP R+ QT L
Sbjct: 305 IVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR--QTML 362
Query: 207 MSATLNDDIQHLKQ-QFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT ++ L + + P + ++DD+ N L Q YV +FLL + K
Sbjct: 363 FSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK 422
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
K + F + + Y +L L + ++ + N R +F
Sbjct: 423 NRKKKLMVFFSSCMSVKYHYEL-LNYIDLPVLAIHGKQKQNKRTTTFFQFCN-------- 473
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
D T+ D A + G+
Sbjct: 474 --------------------------ADSGTLLCTDVAAR------------------GL 489
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTAR 414
D V ++ +D P K Y+HR+GRTAR
Sbjct: 490 DIPEVDWIVQYDPPDDPKEYIHRVGRTAR 518
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 123 bits (308), Expect = 9e-28
Identities = 106/393 (26%), Positives = 175/393 (43%), Gaps = 71/393 (18%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF+ P+ IQ AIP+A+ RDI+A+A G+GKT A++IP ++ + Q
Sbjct: 65 GFEKPSPIQEEAIPVAITG-RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------- 116
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSG-NVSGNLLKSLLTENPEILIATP 152
+I+VPTRELA Q +VV L C I C+ + G N+ ++L+ L E IL+ TP
Sbjct: 117 ALIMVPTRELALQTSQVVRTLGKHCG--ISCMVTTGGTNLRDDILR--LNETVHILVGTP 172
Query: 153 AKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLN 212
+++DL + ++ ++DE D +L+ ++ + +I LP + Q+ L SAT
Sbjct: 173 GRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP--PTHQSLLFSATFP 230
Query: 213 DDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKT 272
++ + P + L ++ K T QYY V E K +F I +
Sbjct: 231 LTVKEFMVKHLHKPYEINLMEELTLKGIT---QYYAFVEERQKLHCLNTLFSKLQIN-QA 286
Query: 273 LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXX 332
+IF N+ +R L + G ++ + R + EF
Sbjct: 287 IIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEF----------------- 329
Query: 333 XXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVAC 392
+Q K + V D ++RG+D + V
Sbjct: 330 --------------------------------RQGKVRTLVCSDL---LTRGIDIQAVNV 354
Query: 393 VLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
V+NFD P TA++Y+HRIGR+ R G G++I+ +
Sbjct: 355 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 387
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 122 bits (307), Expect = 1e-27
Identities = 117/400 (29%), Positives = 172/400 (42%), Gaps = 73/400 (18%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIP-VIQTILDHKKADQND 88
I+ GF+ PT IQS A P+ LQ D+I A TG+GKTL YL+P I +L Q +
Sbjct: 257 IKKAGFQKPTPIQSQAWPIVLQGI-DLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRN 315
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSL--LTENPE 146
L +L PTRELA QV C K L GN + + L + +
Sbjct: 316 RPGML--VLTPTRELALQVEGEC------CKYSYKGLRSVCVYGGGNRDEQIEELKKGVD 367
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
I+IATP +L DL + VN+ + +LV+DE D +L G++ + KI L +R QT +
Sbjct: 368 IIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL--LDVRPDRQTVM 425
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLND-DEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT + L Q + + P I+ + D V K Q + E +K+ +
Sbjct: 426 TSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVK--QNIIVTTEEEKWSHMQTFLQS 483
Query: 266 GLIKGKTLIFVNNIDRGYRLK--LVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
K ++FV+ L L+L ++S L+ + R+ +E F
Sbjct: 484 MSSTDKVIVFVSRKAVADHLSSDLILGNISVES--LHGDREQRDREKALENF-------- 533
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
K K ++ + D SR
Sbjct: 534 -----------------------------------------KTGKVRILIATDL---ASR 549
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISIS 423
G+D +V V NFD P + YVHRIGRT RAG++G+SI+
Sbjct: 550 GLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSIT 589
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 122 bits (306), Expect = 2e-27
Identities = 95/337 (28%), Positives = 171/337 (50%), Gaps = 43/337 (12%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI +GF PT IQS+ +P A+++++D++ A TGSGKTLA+ IP++ +L+ Q
Sbjct: 168 EAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDSQE 227
Query: 88 DEGATL----GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTE 143
E + +I+ PTREL Q+++ + LI + ++ ++ G + + +
Sbjct: 228 TESTEVRGPRALIVAPTRELVIQIMKHINALI--STTQLIATSIVGGLAQVKQERIISQQ 285
Query: 144 NPEILIATPAKLVDLLDAQD-----VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERL-- 196
P+I++ATP +L ++ + LK LV+DE D ++ GY +LT I ++
Sbjct: 286 RPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHE 345
Query: 197 -PLRKSLQTFLMSATLN----DDIQHLKQQFCRS-------PAILKLNDDEVNK----DQ 240
++ LQT + SATL D+ +++ + ++KL NK D
Sbjct: 346 ESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDL 405
Query: 241 TK-------LIQYYVKVG---EFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLE 290
T+ L++ + G E D L ++ L G+T++FVN+ID RL VL+
Sbjct: 406 TRQMGTAGCLVEARINCGNLLEKDTSL----VYLLTRYPGRTIVFVNSIDAARRLYSVLK 461
Query: 291 QFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
I IL++++ R +E+F+++ +L+ATD
Sbjct: 462 SVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATD 498
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 122 bits (306), Expect = 2e-27
Identities = 115/433 (26%), Positives = 199/433 (45%), Gaps = 60/433 (13%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHK----- 82
++I + FK PT IQ + +A + +D+I A TGSGKTLA+ +P++Q +LD +
Sbjct: 204 KSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGK 263
Query: 83 ----KADQNDEGATLG----VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSG 134
K ++ + A G +I+ PTRELA QV E +E S ++ + G +
Sbjct: 264 LYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPI---VGGMFS 320
Query: 135 NLLKSLLTENPEILIATPAKLVDLLDAQD---VNIDRLKFLVIDEVDLVLTFGYQEDLTK 191
+ L E PEI++ATP +L +L+ A + V + L F V+DE D ++ G+ +L
Sbjct: 321 EKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQS 380
Query: 192 ISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG 251
I + LP+ D K Q +S ND +N + K Q +V
Sbjct: 381 ILDLLPV-------------TDKPNEGKTQTVKS------NDTVLNVPKKKR-QTFV--- 417
Query: 252 EFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANS---- 307
F + F+ L +G + ++ ++++ E+ G++ + +L S
Sbjct: 418 -FSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAP 476
Query: 308 --RQHIV--EEFNKNVY-QLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDN 362
+ + EE K+ Y +++ GL++++ T
Sbjct: 477 KIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSE 536
Query: 363 AKKQKKPK-LNVEKDKEYG-------VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTAR 414
K++ + K ++ + E G V+RG+D KNV ++++ LP +A+ YVHR GRTAR
Sbjct: 537 MKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTAR 596
Query: 415 AGKSGISISFVVP 427
A G SI+ + P
Sbjct: 597 AFADGCSIALIEP 609
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 122 bits (306), Expect = 2e-27
Identities = 101/401 (25%), Positives = 176/401 (43%), Gaps = 62/401 (15%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
+ G+K PT IQ +IP+ + RD++A A TGSGKT A+L+P++ +L+ + +
Sbjct: 260 VNKSGYKIPTPIQKCSIPV-ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH--ELEL 316
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
G VI+ PTRELA Q+ K F + + + G S +T ++I
Sbjct: 317 GRPQVVIVSPTRELAIQIFNEARK---FAFESYLKIGIVYGGTSFRHQNECITRGCHVVI 373
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSA 209
ATP +L+D +D + + +F+V+DE D +L G+ ED+ +I + +R QT + SA
Sbjct: 374 ATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSA 433
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIK 269
T ++IQ + +F ++ + + V + + Q +V ++ K +I L
Sbjct: 434 TFPEEIQRMAGEFLKNYVFVAIG--IVGGACSDVKQTIYEVNKYAK--RSKLIEILSEQA 489
Query: 270 GKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDT 329
T++FV L L + + ++ + + R+ + +F ++LIAT
Sbjct: 490 DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT--- 546
Query: 330 XXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKN 389
+V ++ K K +N
Sbjct: 547 --------------------------SVASRGLDIKNIKHVIN----------------- 563
Query: 390 VACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKE 430
+D+P+ YVHRIGRT R G +G + SF P K+
Sbjct: 564 ------YDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD 598
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 122 bits (305), Expect = 2e-27
Identities = 95/298 (31%), Positives = 145/298 (47%), Gaps = 17/298 (5%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLG 94
F PT IQ PLAL RD++ A TGSGKTLAYL+P I I ++ D +
Sbjct: 112 FTEPTPIQCQGFPLALSG-RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD--GPIC 168
Query: 95 VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSL----LTENPEILIA 150
++L PTRELAQQV +V + KC L S + G K L EI IA
Sbjct: 169 LVLAPTRELAQQVQQVADDYG-------KCSRLKSTCIYGGAPKGPQIRDLERGVEICIA 221
Query: 151 TPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSAT 210
TP +L+D L++ N+ R +LV+DE D +L G++ + KI ++ +R QT + SAT
Sbjct: 222 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQ--IRPDRQTLMWSAT 279
Query: 211 LNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKL-IQYYVKVGEFDKFLLCYVIFKLGLIK 269
+++ L + F R + + + E++ + L I E D L+ + + +
Sbjct: 280 WPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKE 339
Query: 270 GKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
KT+IFV R L + + G + ++ + R ++ EF +LIATD
Sbjct: 340 NKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATD 397
Score = 52.4 bits (124), Expect = 2e-06
Identities = 22/46 (47%), Positives = 33/46 (70%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
SRG+D ++V V+N+D P +++ YVHRIGRTAR+ G + +F P
Sbjct: 400 SRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 445
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 121 bits (304), Expect = 3e-27
Identities = 99/400 (24%), Positives = 183/400 (45%), Gaps = 68/400 (17%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP A+ D+I +A +G GKT +++ +Q I +
Sbjct: 59 RAIVDSGFEHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQI-------EP 110
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLL-TENPE 146
G ++L TRELA Q+ + + +++ G V+ + K LL E P
Sbjct: 111 SPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTK--VSVFYGGVNIKIHKDLLKNECPH 168
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTF 205
I++ TP +++ L +D+++ ++ ++DE D +L + + D+ +I + P K Q
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK--QVM 226
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
+ SATL+ +I+ + ++F + P + + DDE L+Q+Y+K+ E +K +
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYV-DDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLD- 284
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
L + +IFV ++ R L +L + S ++S + R
Sbjct: 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER----------------- 327
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
T+ + K+ ++ V D V RG+
Sbjct: 328 --------------------------------LTRYKSFKEGHKRILVATDL---VGRGI 352
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
D + V V+N+D+P +A +Y+HR+GR R G G++I+FV
Sbjct: 353 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 121 bits (304), Expect = 3e-27
Identities = 116/434 (26%), Positives = 192/434 (43%), Gaps = 70/434 (16%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
+ S GF PT IQ+ + P+A+Q RDI+A A TGSGKTL YLIP H + +ND
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQG-RDIVAIAKTGSGKTLGYLIPGFL----HLQRIRNDS 227
Query: 90 --GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G T+ ++L PTRELA Q+ E K S I C L G G L+ L +I
Sbjct: 228 RMGPTI-LVLSPTRELATQIQEEAVKF--GRSSRISCTCLYGGAPKGPQLRDL-ERGADI 283
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ATP +L D+L+ + +++ ++ +LV+DE D +L G++ + KI + +P ++ QT +
Sbjct: 284 VVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR--QTLMY 341
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
+AT ++ + +PA + + + + + Q+ V +K I +
Sbjct: 342 TATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQE 401
Query: 268 IKGKTLIFVNNIDRGYRL-KLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
K +IF + +L + + QFG + ++ + R +++ +F +L+AT
Sbjct: 402 PGSKVIIFCSTKRMCDQLTRNLTRQFG--AAAIHGDKSQPERDNVLNQFRSGRTPVLVAT 459
Query: 327 DDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVD 386
D GL +V D V D
Sbjct: 460 D---------------VAARGL-DVKDIRAVVNYD------------------------- 478
Query: 387 FKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKKDE 446
P + YVHRIGRT RAG +G + +F + KH +IK +
Sbjct: 479 -----------FPNGVEDYVHRIGRTGRAGATGQAFTFFG--DQDSKHASDLIKILEGAN 525
Query: 447 KILGRIIKQQAKLG 460
+ + I++ A G
Sbjct: 526 QRVPPQIREMATRG 539
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 121 bits (304), Expect = 3e-27
Identities = 121/463 (26%), Positives = 200/463 (43%), Gaps = 92/463 (19%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
AI+ ++ PT IQ A+P+ L RD+I A TGSGKT A+++P+I I+D + Q D
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSG-RDVIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QRD 299
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLK----SLLTEN 144
EG +GVI PTRELA Q+ +K K L V G + K L
Sbjct: 300 EGP-IGVICAPTRELAHQIFLEAKKFS-------KAYGLRVSAVYGGMSKHEQFKELKAG 351
Query: 145 PEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
EI++ATP +L+D+L + + + R +LV+DE D + G++ + I + +R QT
Sbjct: 352 CEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQ--IRPDRQT 409
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLND-DEVNKDQTKLIQYYVKVGEFDKFLLCYVIF 263
L SAT+ ++ L ++ P + + + N+D T++ V V D L +++
Sbjct: 410 LLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQV----VNVIPSDAEKLPWLLE 465
Query: 264 KL-GLI-KGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
KL G+I +G L+F + ++ L K L+ + SR +++F V+
Sbjct: 466 KLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHH 525
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
+LIATD V + K K +N Y +
Sbjct: 526 VLIATD-----------------------------VAARGLDIKSLKTVVN------YDI 550
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAG-KSGISISFVVPLKEFGKHKPSMIK 440
++ +D +VHRIGRT RAG + G++ + V
Sbjct: 551 AKDMDM-----------------HVHRIGRTGRAGDRDGVAYTLV--------------- 578
Query: 441 SAKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDG 483
+++ + G ++ G + P D+ +G DG
Sbjct: 579 -TQREARFAGELVNSLVAAGQNVPPELTDLAMKDGRFKSKRDG 620
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 121 bits (303), Expect = 3e-27
Identities = 99/400 (24%), Positives = 183/400 (45%), Gaps = 68/400 (17%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP A+ D+I +A +G GKT +++ +Q I +
Sbjct: 59 RAIVDSGFEHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQI-------EP 110
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLL-TENPE 146
G ++L TRELA Q+ + + +++ G V+ + K LL E P
Sbjct: 111 SPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTK--VSVFYGGVNIKIHKDLLKNECPH 168
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTF 205
I++ TP +++ L +D+++ ++ ++DE D +L + + D+ +I + P K Q
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK--QVM 226
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
+ SATL+ +I+ + ++F + P + + DDE L+Q+Y+K+ E +K +
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYV-DDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLD- 284
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
L + +IFV ++ R L +L + S ++S + R
Sbjct: 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER----------------- 327
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
T+ + K+ ++ V D V RG+
Sbjct: 328 --------------------------------LTRYKSFKEGHKRILVATDL---VGRGI 352
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
D + V V+N+D+P +A +Y+HR+GR R G G++I+FV
Sbjct: 353 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 121 bits (303), Expect = 3e-27
Identities = 125/468 (26%), Positives = 201/468 (42%), Gaps = 122/468 (26%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGK--------------------T 67
+A ++G+K PT IQ IP QE RD+ A A TGSGK T
Sbjct: 180 RACETLGYKKPTPIQVQFIP---QEWRDLCASAITGSGKVSTRLMVLCNTEILFRYLTNT 236
Query: 68 LAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNL 127
A+ +P ++ +L K AT +IL PTRELA Q+ +++ L F +IKC L
Sbjct: 237 AAFALPTLERLLFRPKR----VFATRVLILTPTRELAVQIHSMIQNLAQFT--DIKC-GL 289
Query: 128 SSGNVSGNLLKSLLTENPEILIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQ 186
G +S + +L P+I++ATP +++D L ++ V++D L L++DE D +L G+
Sbjct: 290 IVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFA 349
Query: 187 EDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQY 246
++T++ P R+ QT L SAT+ ++++ L + P L+L+ D + L +
Sbjct: 350 TEITELVRLCPKRR--QTMLFSATMTEEVKELVKLSLNKP--LRLSADPSARRPPGLTEE 405
Query: 247 YVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPAN 306
Y++ EF F G +RLK++ G+K+ L+ L
Sbjct: 406 YLR--EF---------FVPSCASGTK-------QAAHRLKILFGLAGLKAAELHGNLTQA 447
Query: 307 SRQHI----------VEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDST 356
R + +E F K LIATD GL +++ T
Sbjct: 448 QRLDVRNLGTSALFSLELFRKQEVDFLIATD---------------VAARGL-DIIGVQT 491
Query: 357 VTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAG 416
V +N+ P SYVHR+GRTARAG
Sbjct: 492 V------------------------------------INYACPREIDSYVHRVGRTARAG 515
Query: 417 KSGISISFV-------VPLKEFGKHKPSMIKSAKKDEKILGRIIKQQA 457
+ G +++FV + + F +K+ K K+ R+I +Q+
Sbjct: 516 REGYAVTFVTDSDRSLLKVITFESTLFLCLKAKKVGSKLKSRVIPEQS 563
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 121 bits (303), Expect = 3e-27
Identities = 105/400 (26%), Positives = 183/400 (45%), Gaps = 71/400 (17%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKA--DQNDEGA 91
G K+PT IQ +P L RD+I A TGSGKTL +++PVI L+ + + + +EG
Sbjct: 196 GIKNPTPIQVQGLPTVLAG-RDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGP 254
Query: 92 TLGVILVPTRELAQQVLEVVE---KLIVFCSQ-EIK-CLNLSSGNVSGNLLKSLLTENPE 146
G+I+ P+RELA+Q E+++ K + C EI+ CL + VS L +++
Sbjct: 255 -YGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEAL--DVISRGVH 311
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
I++ATP +L+D+LD + + +D ++L +DE D ++ G++ED+ I + QT L
Sbjct: 312 IVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSF--FKGQRQTLL 369
Query: 207 MSATLNDDIQHLKQQFCRSPAILKL-NDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT+ IQ+ + P + + + + T+ ++Y + + + Y++ L
Sbjct: 370 FSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAK-----VVYLLDCL 424
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
LIF + L G+++ ++ R V+ + +L+A
Sbjct: 425 QKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVA 484
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD V +K G+
Sbjct: 485 TD-----------------------------VASK-----------------------GL 492
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
DF NV V+N+D+P ++YVHRIGRT R+ G++ + +
Sbjct: 493 DFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLI 532
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 120 bits (302), Expect = 4e-27
Identities = 111/410 (27%), Positives = 185/410 (45%), Gaps = 39/410 (9%)
Query: 38 PTLIQSSAIPLALQ-EKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVI 96
PT IQS +P L + +D +A TGSGKTLAYL+P++Q ++ K VI
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 97 LVPTRELAQQVLEVVEKLIVF-CSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKL 155
+ PTREL QQ+ V KL S I N+ G + K+ + + ILI TP +L
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKS-EKARIRKGVNILIGTPGRL 280
Query: 156 VDLLD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSL-----------Q 203
D L+ + +++ +++++V+DE D ++ G++E LTKI L + S+
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKV 340
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLN-----DDEVNKDQTKLIQYYVKVGEFDKFLL 258
T L SAT+ D ++ L + LK + +D ++ +L+Q YV V + +
Sbjct: 341 TMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVS 400
Query: 259 CYVIFKLGLIK-GKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNK 317
+ + + K +IF++ D V F C +N A+ + V+E
Sbjct: 401 LVALLRSHVRSYKKIIIFLSCSDS------VDFHFEAFRCAIN----ADEMEEAVKEKPD 450
Query: 318 NVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDK 377
+ ++ L + + ST+ +++ L
Sbjct: 451 SEGDII----SNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVA 506
Query: 378 EYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
G+ D NV V+ +D P + Y+HRIGRTARAG +G +I F++P
Sbjct: 507 ARGL----DLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLP 552
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 120 bits (302), Expect = 4e-27
Identities = 104/404 (25%), Positives = 179/404 (43%), Gaps = 85/404 (21%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
IR IG+ P+ +Q ++IP L K +++ ++ G+GKT +Y++P++ I + E
Sbjct: 123 IRDIGYDFPSPVQVASIPHVLGGK-NLLVRSKNGTGKTASYIVPMLNMI-------NSSE 174
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSL--------L 141
+ G+ILVP RELA Q+ S+ +K ++ +G +S ++ +
Sbjct: 175 LSIQGIILVPIRELALQI-----------SRNVKRMSEGTGVISAPVVGGTSMQDDIIRV 223
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS 201
+ +++ TP ++VDL++ + + + LV DE D +L + E +TK+ + LP K
Sbjct: 224 SNGVHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREK- 282
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYV 261
Q L SAT + +++ ++P + L E+ K YVK E LLC
Sbjct: 283 -QMLLYSATFPYFVTGFIRRYMKNPLCINLMK-ELAPVGVKQFYTYVKPSEK---LLCLK 337
Query: 262 IFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
L L + +IF N+I L + + + G+ S ++S++ R + F K
Sbjct: 338 SLLLRLSINQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKG--- 394
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
K K+ V D +
Sbjct: 395 ----------------------------------------------KCKILVATDL---I 405
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RGVD N V+NFD+ + +SY+HRIGR R G G++IS V
Sbjct: 406 TRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLV 449
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 120 bits (301), Expect = 6e-27
Identities = 105/406 (25%), Positives = 187/406 (45%), Gaps = 78/406 (19%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ 86
+ I ++ F+ P+ IQ A+PL L R++IA++ +G+GKT A+ + ++ +
Sbjct: 105 KGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV-------N 157
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
++ + + L P+RELA+Q LEVV+++ F ++S + + + N +
Sbjct: 158 PEDASPQAICLAPSRELARQTLEVVQEMGKFTK-------ITSQLIVPDSFEKNKQINAQ 210
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTF 205
+++ TP ++DL+ + + + ++K V+DE D +L G + ++ LP K Q
Sbjct: 211 VIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP--KDTQLV 268
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
L SAT D ++ ++ + L+L +EVN D K + K E DKF + ++ L
Sbjct: 269 LFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK-NEADKFDVLTELYGL 327
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
I G ++IFV L L+ G + IL+ +L R ++++F + ++LI
Sbjct: 328 MTI-GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 386
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
T+ L +D TV
Sbjct: 387 TN-------------------VLARGIDIPTV---------------------------- 399
Query: 386 DFKNVACVLNFDLPTTAK------SYVHRIGRTARAGKSGISISFV 425
+ V+N+DLPT A +Y+HRIGRT R G+ G++ISFV
Sbjct: 400 -----SMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 440
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 120 bits (301), Expect = 6e-27
Identities = 111/422 (26%), Positives = 180/422 (42%), Gaps = 59/422 (13%)
Query: 55 DIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEKL 114
DI+ A+TGSGKTLAY IP++QT+ + +I+VPT+ L QV + KL
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLF------KRQINRLRCIIIVPTKLLINQVYTTLTKL 282
Query: 115 IVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVI 174
S + L + + K L P+ILI TP +LVD L+ + +N+ LKFL+I
Sbjct: 283 TQGTSLIVSIAKLENSLKDEH--KKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLII 340
Query: 175 DEVDLVLTFGYQEDLTKISERLPLRK------SLQTFLMSATLNDDIQHLKQQFCRSPAI 228
DE D +L +Q K+ L K ++ + SATL + + L P +
Sbjct: 341 DEADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKL 400
Query: 229 LKLNDDEVNKDQTKLIQYYVKV----GEFDKFLLCYVIFKL---GLIKGKTLIFVNNIDR 281
D++ + KL ++ + + + +L Y I + I K LIFV + +
Sbjct: 401 FLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNES 460
Query: 282 GYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXX 341
RL +L +L SR KN+ L ++ +
Sbjct: 461 SIRLSKLL------------QLICESRSQ--SSVLKNLQNLAVSINSVNSNNSKAENKKI 506
Query: 342 XXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTT 401
E + + T D +SRG+D ++ V+N+D P +
Sbjct: 507 VANFSHHSESAGITILITTDI------------------MSRGIDINDITQVINYDPPMS 548
Query: 402 AKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKKDEKILGRIIKQQAKLGF 461
++ YVHR+GRTARA + G + + +V G+ + + KD G+ + Q +L F
Sbjct: 549 SQQYVHRVGRTARANELGSAYNLLV-----GRGERTFFDDLNKDLDRDGKSV-QPLELDF 602
Query: 462 EL 463
L
Sbjct: 603 TL 604
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 120 bits (301), Expect = 6e-27
Identities = 107/418 (25%), Positives = 184/418 (43%), Gaps = 76/418 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTIL-DHKKADQ 86
+AI+ G++ T++Q + +P+ L+ K D++AKA TG+GKT+A+L+P I+ ++ +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGK-DVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPD 125
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
N L +++ PTRELA Q L+ + I + G G K + T +
Sbjct: 126 NKRPPILALVICPTRELANQAATEANTLLKY-HPSIGVQVVIGGTRLGLEQKRMQTNPCQ 184
Query: 147 ILIATPAKLVDLLDAQDVNIDRL---KFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQ 203
IL+ATP +L D ++ RL K LV+DE D +L G+++D+ +I +P K Q
Sbjct: 185 ILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVP--KERQ 242
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFD-------KF 256
TFL SAT+ +++ +Q C L+ + + VN I+ + +V + F
Sbjct: 243 TFLFSATVPEEV----RQICL--VALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHF 296
Query: 257 LLCYVIFK---LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVE 313
L Y + + +G + K ++F + +L + + ++S P + R +
Sbjct: 297 SLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSN 356
Query: 314 EFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNV 373
EF K+ GL+ V D + D
Sbjct: 357 EFRKS---------------------------KGLILVTSDVSARGVD------------ 377
Query: 374 EKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEF 431
+ +V VL LP + Y+HR+GRT R GK G I + P +E+
Sbjct: 378 -------------YPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEEY 422
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 120 bits (301), Expect = 6e-27
Identities = 117/417 (28%), Positives = 189/417 (45%), Gaps = 76/417 (18%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
+ S GF P+ IQ+ + P+A+Q RDI+A A TGSGKTL YLIP H + ND
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQN-RDIVAIAKTGSGKTLGYLIPGFM----HLQRIHNDS 298
Query: 90 --GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G T+ ++L PTRELA Q+ VE L S +I C L G G LK + +I
Sbjct: 299 RMGPTI-LVLSPTRELATQIQ--VEALKFGKSSKISCACLYGGAPKGPQLKEI-ERGVDI 354
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ATP +L D+L+ + +++ ++ +LV+DE D +L G++ + KI +P ++ QT +
Sbjct: 355 VVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKR--QTLMY 412
Query: 208 SATLNDDIQHLKQQFCRSPAILKL-NDDEV--NKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
+AT +++ + +PA + + N DE+ NK T+ I+ + +K I +
Sbjct: 413 TATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEV---LAPMEKHSRLEQILR 469
Query: 265 LGLIKGKTLIFVNNIDRGYRL-KLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
K +IF + +L + + FG + ++ + R ++ +F +L
Sbjct: 470 SQEPGSKIIIFCSTKRMCDQLARNLTRTFG--AAAIHGDKSQAERDDVLNQFRSGRTPVL 527
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
+ATD GL +V D V D
Sbjct: 528 VATD---------------VAARGL-DVKDIRVVVNYD---------------------- 549
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIK 440
P + YVHRIGRT RAG +G++ +F + KH +IK
Sbjct: 550 --------------FPNGVEDYVHRIGRTGRAGATGLAYTFFG--DQDAKHASDLIK 590
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 120 bits (301), Expect = 6e-27
Identities = 99/402 (24%), Positives = 178/402 (43%), Gaps = 67/402 (16%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++ G HPT IQ +P+ L RD+I A TGSGKTL +++P+I L +
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAA 170
Query: 90 G-ATLGVILVPTRELAQQVLEVVEKLIVFCSQE----IKCLNLSSGNVSGNLLKSLLTEN 144
G + +++ P+RELA+Q +VVE+ + ++ ++ L L G V ++ +
Sbjct: 171 GEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSL-LCIGGVDMRSQLDVVKKG 229
Query: 145 PEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
I++ATP +L D+L + +++D + L +DE D ++ G+++D+ + + + QT
Sbjct: 230 VHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDH--FKSQRQT 287
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKL-NDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIF 263
L SAT+ IQ P + + N D + ++Y + + + Y++
Sbjct: 288 LLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK-----IVYLLE 342
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
L LIF N + L G+++ ++ R + + F +L
Sbjct: 343 CLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVL 402
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
+ATD V +K
Sbjct: 403 VATD-----------------------------VASK----------------------- 410
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
G+DF ++ V+N+D+P ++YVHRIGRT R GK+GI+ +F+
Sbjct: 411 GLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFI 452
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 119 bits (299), Expect = 1e-26
Identities = 108/418 (25%), Positives = 187/418 (43%), Gaps = 76/418 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI+ GF+ T++Q + +P+ LQ K D++AKA TG+GKT+A+L+P I+ ++ A ++
Sbjct: 372 KAIKDAGFETMTVVQEATLPIILQGK-DVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRD 430
Query: 88 DEGATLGVILV-PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ V++V PTRELA Q L+ + I + G + + T +
Sbjct: 431 SRQPPIIVLVVCPTRELASQAAAEANTLLKY-HPSIGVQVVIGGTKLPTEQRRMQTNPCQ 489
Query: 147 ILIATPAKLVDLLDAQDVNIDRL---KFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQ 203
IL+ATP +L D ++ RL K LV+DE D +L G++ D+ +I +P K Q
Sbjct: 490 ILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVP--KQRQ 547
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVN-------KDQTKLIQYYVKVGEFDKF 256
TFL SAT+ +++ +Q C LK + + +N + K+ Q Y+ F
Sbjct: 548 TFLFSATVPEEV----RQICH--VALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHF 601
Query: 257 LLCYVIFKLGL---IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVE 313
L +V+ K + + K +IF + +L Q + ++S P + R + +
Sbjct: 602 SLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSD 661
Query: 314 EFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNV 373
EF K+ +L+ +D + V+ D S V ++ +
Sbjct: 662 EFRKSKAIILVTSDVSARG----------------VDYPDVSLVV-----------QMGL 694
Query: 374 EKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEF 431
D+E Y+HR+GRT R GK G + + P +E+
Sbjct: 695 PSDRE-------------------------QYIHRLGRTGRKGKEGEGVLLLAPWEEY 727
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 119 bits (298), Expect = 1e-26
Identities = 110/409 (26%), Positives = 172/409 (41%), Gaps = 77/409 (18%)
Query: 38 PTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVIL 97
PT +QSS IP +L R ++ A TGSGKTL+YL+P++Q +L D A G++L
Sbjct: 151 PTTVQSSTIP-SLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVL 209
Query: 98 VPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP--EILIATPAKL 155
VP+RELAQQV V + L ++ L G ++ L+ P ++L+ATP L
Sbjct: 210 VPSRELAQQVRAVAQPLGRSLGLLVRDL---EGGHGMRRIRLQLSRQPSADVLVATPGAL 266
Query: 156 VDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERL-----------PLRKSLQT 204
L ++ +++++L FLV+DE D +L + E + I E+ P Q
Sbjct: 267 WKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQL 326
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
L+ AT + + L + A+ + +++ + Q ++++ DK I K
Sbjct: 327 VLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKGADKVAELVHILK 386
Query: 265 ------LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKN 318
G L+F N+ L +L+ I+ L ++PA R I + F K+
Sbjct: 387 HRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKS 446
Query: 319 VYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKE 378
+L+ TD GL DST
Sbjct: 447 SRDILLCTD---------------IASRGL-----DST---------------------- 464
Query: 379 YGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKS--GISISFV 425
V V+N+D P T + Y+HR GR R G G ISFV
Sbjct: 465 ----------GVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFV 503
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 119 bits (298), Expect = 1e-26
Identities = 121/453 (26%), Positives = 199/453 (43%), Gaps = 107/453 (23%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ + +G + PT +Q+ +P L RD++ A TGSGKT A+ +P++ H+ A+
Sbjct: 71 ETCKELGMRKPTPVQTHCVPKILAG-RDVLGLAQTGSGKTAAFALPIL-----HRLAE-- 122
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTEN--- 144
D +++ PTRELA Q+ E + L CLNL + G + +LT+
Sbjct: 123 DPYGVFALVVTPTRELAFQLAEQFKALG-------SCLNLRCSVIVGGM--DMLTQTMSL 173
Query: 145 ---PEILIATPAKLVDLLDAQ-DVN--IDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL 198
P I+I TP ++ LL+ DV R KFLV+DE D VL G+Q++L I + LP
Sbjct: 174 VSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP- 232
Query: 199 RKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLL 258
KS QT L SAT+ ++Q L + + E K L Q ++ + K L
Sbjct: 233 -KSRQTLLFSATMTSNLQALLEHSSNKAYFYEAY--EGLKTVDTLTQQFIFEDKDAKEL- 288
Query: 259 CYVIFKLGLIKGK----TLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEE 314
Y++ L ++ K +IFV+ RL L+L++ +++ ++S + R + +
Sbjct: 289 -YLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSK 347
Query: 315 FNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVE 374
F +L+ATD GL D TV N + P+
Sbjct: 348 FKSGKVPILLATD---------------VASRGL----DIPTVDLVINYDIPRDPR---- 384
Query: 375 KDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKH 434
YVHR+GRTARAG+ G+++S +
Sbjct: 385 -----------------------------DYVHRVGRTARAGRGGLAVSII--------- 406
Query: 435 KPSMIKSAKKDEKILGRIIKQQAKLGFELQPYN 467
+ D K++ +I + ++G +++PYN
Sbjct: 407 -------TETDVKLIHKI---EEEVGKKMEPYN 429
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 119 bits (297), Expect = 2e-26
Identities = 125/442 (28%), Positives = 186/442 (41%), Gaps = 89/442 (20%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AIR ++ PT IQ+ AIP AL RD++ A TGSGKT AYL P I I+D + D
Sbjct: 278 EAIRKSEYEQPTPIQAMAIPSALSG-RDVLGIAKTGSGKTAAYLWPAIVHIMD--QPDLK 334
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCS-QEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ VI+VPTRELA QV + +K FC I + G L E E
Sbjct: 335 AGEGPVAVIVVPTRELAIQVFQEAKK---FCKVYNINPICAYGGGSKWEQSNELQNEGAE 391
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+++ TP +++DL+ N R FLV DE D + G++ + IS+ +R Q +
Sbjct: 392 MVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDH--VRPDRQCLM 449
Query: 207 MSATLNDDIQHLKQQFCRSPA-ILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT ++ L + P I++ E N D I+ V V + L ++I L
Sbjct: 450 FSATFKQKVERLARDALVDPVRIVQGEVGEANAD----IEQKVFVMQNQDVKLHWLIRNL 505
Query: 266 GLIK--GKTLIFVNN--IDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
GK LIFV KL ++ F I +L+ ++ R + +F K Q
Sbjct: 506 VEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDI--VLLHGDMLQAERNENLLKFRKK-SQ 562
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
+L+ATD GL D S + T
Sbjct: 563 ILVATD---------------VAARGL----DISEIRT---------------------- 581
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKS 441
V+NFD+ ++VHRIGRT RAG G + + V
Sbjct: 582 -----------VINFDMARDIDTHVHRIGRTGRAGHKGTAYTLV---------------- 614
Query: 442 AKKDEKILGRIIKQQAKLGFEL 463
+KD +++G ++K + E+
Sbjct: 615 TEKDIEMVGHLVKNLESVSQEV 636
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 118 bits (296), Expect = 2e-26
Identities = 93/297 (31%), Positives = 148/297 (49%), Gaps = 12/297 (4%)
Query: 32 SIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGA 91
S GF PT IQ+ P+ALQ RDI+A A TGSGKTL YLIP +L H + D + G
Sbjct: 452 SAGFPSPTPIQAQTWPIALQS-RDIVAIAKTGSGKTLGYLIPAF-ILLRHCRNDSRN-GP 508
Query: 92 TLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIAT 151
T+ +IL PTRELA Q+ + E L S I C L G G LK L +I++AT
Sbjct: 509 TV-LILAPTRELATQIQD--EALRFGRSSRISCTCLYGGAPKGPQLKEL-ERGADIVVAT 564
Query: 152 PAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATL 211
P +L D+L+ + ++ ++ LV+DE D +L G++ + KI +P R+ QT + +AT
Sbjct: 565 PGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR--QTLMYTATW 622
Query: 212 NDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGK 271
+++ + +P + + + + QY V + +K I + K
Sbjct: 623 PKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSK 682
Query: 272 TLIFVNNIDR-GYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+IF + + + V FG + +++ + R ++ +F +LIATD
Sbjct: 683 VIIFCSTKRLCDHLARSVGRHFG--AVVIHGDKTQGERDWVLNQFRSGKSCVLIATD 737
Score = 59.3 bits (142), Expect = 2e-08
Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIK 440
+RG+D K++ V+N+D PT + YVHRIGRT RAG +G++ +F ++ K+ P +IK
Sbjct: 740 ARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFT--EQDWKYAPDLIK 796
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 118 bits (296), Expect = 2e-26
Identities = 104/399 (26%), Positives = 178/399 (44%), Gaps = 66/399 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I G+K PT IQ IPL L E RD++A A TGSGKT +LIP+ + + + +
Sbjct: 108 KGITKRGYKVPTPIQRKTIPLIL-EGRDVVAMAKTGSGKTACFLIPLFEKL----QRREP 162
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+GA +IL PTRELA Q + +++L F E+K + + G+ + ++ T P++
Sbjct: 163 TKGAR-ALILSPTRELAVQTYKFIKELGRF--MELKSILVLGGDSMDSQFSAIHT-CPDV 218
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ATP + + L D+ ++ ++++V DE D + G+ E L + RLP S QT +
Sbjct: 219 IVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLP--SSRQTVMF 276
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SATL + + P +++L+ + D L Y + D++ V+ K +
Sbjct: 277 SATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPD--DRYTALVVLLKYVI 334
Query: 268 -IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
++ +T++F + +L + GI + + S L +R+ +F +LI T
Sbjct: 335 PVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVT 394
Query: 327 DDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVD 386
D +D ++ N KPKL
Sbjct: 395 DVAARG-------------------IDIPSLDFVVNLHFPGKPKL--------------- 420
Query: 387 FKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+VHR+GR ARAG++G + S V
Sbjct: 421 ------------------FVHRVGRCARAGRTGTAYSIV 441
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 115 bits (289), Expect = 1e-25
Identities = 92/325 (28%), Positives = 164/325 (50%), Gaps = 39/325 (12%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
++ GF P IQS IP A DII KA TGSGKTLA+ IP+++ L + A
Sbjct: 136 SLSKAGFSKPMPIQSLVIPEA-SIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKY-- 192
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEIL 148
+++ PTRELA Q+ + E ++ S I+ ++++ G ++ + LL ++P ++
Sbjct: 193 ---VQALVVAPTRELAHQICQHFE--LIKPSPNIRVMSITGG-LAVQKQQRLLNKHPHVV 246
Query: 149 IATPAKLVDLLDAQDV--NIDRLKFLVIDEVDLVLTFGYQEDLTKISERL--PLRKSLQT 204
+ATP +L +++ ++ N ++K LV+DE D +L + E+L+K+ E L P+ QT
Sbjct: 247 VATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQT 306
Query: 205 FLMSATLNDDIQH---------------------LKQ-QFCRSPAILKLNDDEVNKDQTK 242
F+ SAT ++ +Q LK+ +F P L N ++
Sbjct: 307 FIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVA--SR 364
Query: 243 LIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSE 302
+++ ++ +K L Y+ + + GKT++F N I+ R+ L + + S L+++
Sbjct: 365 VLEGLIECAPAEKDL--YLYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQ 422
Query: 303 LPANSRQHIVEEFNKNVYQLLIATD 327
L R +E+F N +L+ TD
Sbjct: 423 LDQKKRLQSLEKFKNNPKGVLVCTD 447
Score = 51.2 bits (121), Expect = 4e-06
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKS 441
+RG+D +V V+++ +P TA YVHR GRTARA + G+SI P KE + K +
Sbjct: 450 ARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGP-KELSQLKRLCYRL 508
Query: 442 AKKDEKIL 449
KK E +
Sbjct: 509 KKKIETFI 516
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 115 bits (289), Expect = 1e-25
Identities = 81/301 (26%), Positives = 150/301 (48%), Gaps = 13/301 (4%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
+++ G++ PT IQ+ AIP A+ RD+I A TGSGKT+A+L+P+ + I+D + ++ +
Sbjct: 386 SLKKHGYEKPTPIQTQAIP-AIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGE 444
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEIL 148
+ VI+ PTRELA Q+ + +K + C+ +G +S + + L EI+
Sbjct: 445 --GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTG-ISEQIAE--LKRGAEII 499
Query: 149 IATPAKLVDLLDAQD---VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTF 205
+ TP +++D+L A N+ R+ ++V+DE D + G++ + +I + +R QT
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN--VRPDRQTV 557
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
+ SAT ++ L ++ P +++ V + Q + + E KFL +
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVE--QQVIVIEEEKKFLKLLELLGH 615
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
G +IFV+ + L L + L+ + R I+ +F +LL+A
Sbjct: 616 YQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVA 675
Query: 326 T 326
T
Sbjct: 676 T 676
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 115 bits (289), Expect = 1e-25
Identities = 89/300 (29%), Positives = 146/300 (48%), Gaps = 22/300 (7%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF PT IQ P+AL RD++ A TGSGKTL++++P + D + + D L
Sbjct: 106 GFSEPTAIQGQGWPMALSG-RDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVL 164
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS----LLTENPEILI 149
+L PTREL Q+ +VV++ FC NL S V G L E E++I
Sbjct: 165 --VLAPTRELVMQIKKVVDE---FCGM----FNLRSTAVYGGASSQPQIRALHEGAEVVI 215
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSA 209
ATP +L+DL D + R+ FLV+DE D +L G++ L KI + + QT + SA
Sbjct: 216 ATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANR--QTLMWSA 273
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEV--NKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
T +++ L + + + + ++E+ N ++++ + DK + FK
Sbjct: 274 TWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFK--- 330
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
K ++F N L+ VL + G + L+ + N R ++++F +LIAT+
Sbjct: 331 -GDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATE 389
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 115 bits (288), Expect = 2e-25
Identities = 112/417 (26%), Positives = 185/417 (43%), Gaps = 74/417 (17%)
Query: 28 QAIRSIGFKHPTLIQSSAI-PLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ 86
+AI + F T +Q I P+ E D+IA+A TG+GKT A+LIP+ Q +++ K Q
Sbjct: 119 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 178
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKL--IVFCSQEIKCLNLSSGNVSGNLLKSLLTEN 144
VI+ PTR+LA Q+ V+K+ + + ++ C++L G + +
Sbjct: 179 Y---MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 235
Query: 145 PEILIATPAKLVDLLDAQDVNIDR-LKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS-- 201
P I+IATP +L+D+L+ R + + V+DE D +L G+++DL IS L + S
Sbjct: 236 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 295
Query: 202 ---LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQT--KLIQYYVKVGEFDKF 256
++T L SATL+D +Q L L L+ + N+ + ++ Q V +F
Sbjct: 296 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 355
Query: 257 LLCYVIFKLGLIKG-----KTLIFVNNID-RGYRLKLVLEQFGIKSCIL--NSELPANSR 308
+ V IK K +IF + + ++ +F IL + ++ N R
Sbjct: 356 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 415
Query: 309 QHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKK 368
+V+ F K+ +L+ TD A+
Sbjct: 416 TSLVKRFKKDESGILVCTD---------------------------------VGARGMDF 442
Query: 369 PKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
P NV + + GV P+ +Y+HRIGRTAR+GK G S+ F+
Sbjct: 443 P--NVHEVLQIGV-----------------PSELANYIHRIGRTARSGKEGSSVLFI 480
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 115 bits (288), Expect = 2e-25
Identities = 111/418 (26%), Positives = 185/418 (43%), Gaps = 76/418 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I GFK T++Q + +PL LQ K DI+AKA TG+GKT+A+L+P I+ ++ A ++
Sbjct: 93 KGIEDAGFKTMTVVQEATLPLILQGK-DILAKAKTGTGKTVAFLLPSIEAVIKAPPASRD 151
Query: 88 DEGATLGVILV-PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ + V++V PTRELA Q L+ + I + G + L +
Sbjct: 152 NRHPPIIVLVVCPTRELACQAAAEANILLKY-HPSIGVQVVIGGTKLPTEQRRLQKSPCQ 210
Query: 147 ILIATPAKLVDLLDAQDVNIDRL---KFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQ 203
IL+ATP +L D +D RL K LV+DE D +L G++ ++ +I +P K Q
Sbjct: 211 ILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVP--KQRQ 268
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVN-------KDQTKLIQYYVKVGEFDKF 256
TFL SAT++D++ +Q C LK + + VN + K+ Q Y+ F
Sbjct: 269 TFLFSATVSDEV----RQICH--VALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHF 322
Query: 257 LLCYVIFKLGL---IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVE 313
L Y + K + + K +IF + +L + + ++S P + R + +
Sbjct: 323 SLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSD 382
Query: 314 EFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNV 373
EF K+ +L+ +D + V+ D S V ++ +
Sbjct: 383 EFRKSKSIILVTSDVSARG----------------VDYPDVSLVV-----------QMGL 415
Query: 374 EKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEF 431
D+E Y+HR+GRT R GK G + + P +E+
Sbjct: 416 PSDRE-------------------------QYIHRLGRTGRKGKEGEGVLLLAPWEEY 448
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 115 bits (287), Expect = 2e-25
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 70/398 (17%)
Query: 39 TLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILV 98
T IQ AIP + KRD++A A TGSGKT+AYL P++Q + H G +I+
Sbjct: 70 TTIQRYAIP-TIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHV------PGGYRAIIVA 122
Query: 99 PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDL 158
PTREL +Q+ EKL S +K + LS N L E ++ I TP +LV
Sbjct: 123 PTRELCEQIYRQAEKLSFGTS--LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQA 180
Query: 159 LDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHL 218
+ ++ ++++F V+DE D + G+ E I ++ L SAT+ ++ L
Sbjct: 181 IQT-GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSAC-TSSNICKSLFSATIPSRVEEL 238
Query: 219 KQQFCRSP--AILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFV 276
+ P I+ L D + +L+ + K ++ + G +K + +IFV
Sbjct: 239 AKVVTVDPIRIIVGLKDAATDSIDQRLL---FVGSDTSKIVILRQMISNGELKPRVVIFV 295
Query: 277 NNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXX 336
+I+R L L I +++ ELP R+ + +F K +LIATD
Sbjct: 296 QDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATD--------- 346
Query: 337 XXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNF 396
L +GV ++F
Sbjct: 347 ----------------------------------LLARGIDFHGVKMVINF--------- 363
Query: 397 DLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKH 434
D P + SY+HRIGRT RAG +G +++F KE G++
Sbjct: 364 DFPQSVHSYIHRIGRTGRAGNTGQAVTFFT--KEDGEY 399
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 115 bits (287), Expect = 2e-25
Identities = 91/303 (30%), Positives = 148/303 (48%), Gaps = 17/303 (5%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
AI+ +GF++ T IQ+ +I L E +D++ A TGSGKTLA+LIP ++ + + + +N
Sbjct: 103 AIKEMGFQYMTQIQAGSIQ-PLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNG 161
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS---LLTENP 145
G +++ PTRELA Q V E+L+ SQ + + + GN +S +
Sbjct: 162 TGV---IVICPTRELAIQTKNVAEELLKHHSQTVSMV------IGGNNRRSEAQRIASGS 212
Query: 146 EILIATPAKLVDLLDAQDVNI-DRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
++IATP +L+D L I LK LVIDE D +L ++ED+ KI + LP K+ QT
Sbjct: 213 NLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILP--KTRQT 270
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
L SAT ++ L + SP + ++D L Q Y V + +L K
Sbjct: 271 ALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLK 330
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
L K K ++F + +++ + ++ + N R +F K +L+
Sbjct: 331 KNLNK-KIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILL 389
Query: 325 ATD 327
TD
Sbjct: 390 CTD 392
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 114 bits (286), Expect = 3e-25
Identities = 105/399 (26%), Positives = 169/399 (42%), Gaps = 55/399 (13%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
G+ T IQ A+PL + + DI+A A TGSGKT A+L+P++ ++D + EG
Sbjct: 360 GYSKTTPIQQYALPL-VHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCY 418
Query: 94 G--VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIAT 151
+IL PTRELA Q+ K EIK + G ++ K + + I++ T
Sbjct: 419 PRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVY---GGLAVGYNKGQIEKGATIIVGT 475
Query: 152 PAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKIS--ERLPLRKSLQTFLMS 208
++ + + +D+ +F V+DE D ++ G+ D+ I + +P +++ QT + S
Sbjct: 476 VGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFS 535
Query: 209 ATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLI 268
AT D +Q + F R + YV + I K+G
Sbjct: 536 ATFPDSVQEAARAFLR--------------------ENYVMIA----------IDKIGAA 565
Query: 269 KGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKN--VYQLLIAT 326
L +R + +LE GI ++ + + + E + K V+ A
Sbjct: 566 NKCVLQEFERCERSEKKDKLLELLGI-------DIDSYTTEKSAEVYTKKTMVFVSQRAM 618
Query: 327 DDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVD 386
DT G E + S + + KP L E RG+D
Sbjct: 619 ADTLASILSSAQVPAITIH-GAREQRERSEALRQ--FRNGSKPVLIATAVAE----RGLD 671
Query: 387 FKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
K V V+N+D+P Y+HRIGRT R G SG + SF+
Sbjct: 672 IKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFI 710
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 113 bits (283), Expect = 7e-25
Identities = 84/295 (28%), Positives = 147/295 (49%), Gaps = 18/295 (6%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF+ P+ IQ AI + + E D++A+A +G+GKT + I +Q I KA Q
Sbjct: 41 GFEEPSAIQQRAI-MPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ------- 92
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIK-CLNLSSGNVSGNLLKSLLTENPEILIATP 152
++L PTRELA Q+ +VV L ++ C+ +S L+ + +I++ TP
Sbjct: 93 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTP 147
Query: 153 AKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLN 212
++ D + + D++K ++DE D +L+ G++E + +I LP + Q L+SAT+
Sbjct: 148 GRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP--PTTQVVLLSATMP 205
Query: 213 DDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKT 272
+D+ + +F R+P + + DE+ + K Q+YV V E + C + +
Sbjct: 206 NDVLEVTTKFMRNPVRILVKKDELTLEGIK--QFYVNVEEEEYKYECLTDLYDSISVTQA 263
Query: 273 LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+IF N + L L + S+LP R I++EF ++LI+TD
Sbjct: 264 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 318
Score = 55.5 bits (132), Expect = 2e-07
Identities = 25/70 (35%), Positives = 43/70 (60%), Gaps = 5/70 (7%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVV-----PLKEFGKHK 435
++RG+D + V+ V+N+DLP ++Y+HRIGR R G+ G++I+FV ++E K
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 379
Query: 436 PSMIKSAKKD 445
+ I+ D
Sbjct: 380 STQIEELPSD 389
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 113 bits (283), Expect = 7e-25
Identities = 84/295 (28%), Positives = 147/295 (49%), Gaps = 18/295 (6%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF+ P+ IQ AI + + E D++A+A +G+GKT + I +Q I KA Q
Sbjct: 41 GFEEPSAIQQRAI-MPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ------- 92
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIK-CLNLSSGNVSGNLLKSLLTENPEILIATP 152
++L PTRELA Q+ +VV L ++ C+ +S L+ + +I++ TP
Sbjct: 93 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTP 147
Query: 153 AKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLN 212
++ D + + D++K ++DE D +L+ G++E + +I LP + Q L+SAT+
Sbjct: 148 GRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP--PTTQVVLLSATMP 205
Query: 213 DDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKT 272
+D+ + +F R+P + + DE+ + K Q+YV V E + C + +
Sbjct: 206 NDVLEVTTKFMRNPVRILVKKDELTLEGIK--QFYVNVEEEEYKYECLTDLYDSISVTQA 263
Query: 273 LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+IF N + L L + S+LP R I++EF ++LI+TD
Sbjct: 264 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 318
Score = 55.5 bits (132), Expect = 2e-07
Identities = 25/70 (35%), Positives = 43/70 (60%), Gaps = 5/70 (7%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVV-----PLKEFGKHK 435
++RG+D + V+ V+N+DLP ++Y+HRIGR R G+ G++I+FV ++E K
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 379
Query: 436 PSMIKSAKKD 445
+ I+ D
Sbjct: 380 STQIEELPSD 389
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 113 bits (283), Expect = 7e-25
Identities = 109/390 (27%), Positives = 173/390 (43%), Gaps = 69/390 (17%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLG 94
F PT IQ+ A P L K D++ A TGSGKT A+ +P I +++ DQ G +
Sbjct: 132 FPKPTPIQAVAWPYLLSGK-DVVGVAETGSGKTFAFGVPAISHLMN----DQKKRGIQV- 185
Query: 95 VILVPTRELAQQVLEVVEKLIVFCSQE-IKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
+++ PTRELA Q+ + LIV + ++C + G + + + ++++ATP
Sbjct: 186 LVISPTRELASQIYD---NLIVLTDKVGMQCCCVYGGVPKDE--QRIQLKKSQVVVATPG 240
Query: 154 KLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLND 213
+L+DLL V++ ++ +LV+DE D +L G++ED+ I K QT + +AT
Sbjct: 241 RLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKR-QTLMFTATWPK 299
Query: 214 DIQHLKQQFCRSPAILKL-NDDEV--NKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKG 270
+++ L F +P + + N D++ NK T++++ G+ K L + G K
Sbjct: 300 EVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKN 359
Query: 271 -KTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDT 329
K LIF R++ L+ G ++ +L R + EF LL+ATD
Sbjct: 360 EKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATD-- 417
Query: 330 XXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKN 389
GL D V T N
Sbjct: 418 -------------VAARGL----DIPNVKTVIN--------------------------- 433
Query: 390 VACVLNFDLPTTAKSYVHRIGRTARAGKSG 419
L F L T + YVHRIGRT RAG++G
Sbjct: 434 ----LTFPL--TVEDYVHRIGRTGRAGQTG 457
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 113 bits (283), Expect = 7e-25
Identities = 86/298 (28%), Positives = 151/298 (49%), Gaps = 14/298 (4%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++ G++ PT IQ IP+ L RDI+A A TGSGKT A+L+PVI L K
Sbjct: 218 LKKSGYEVPTPIQMQMIPVGLLG-RDILASADTGSGKTAAFLLPVIMRALFESKTPS--- 273
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+IL PTRELA Q+ ++L+ + L + + L + L ++ +++I
Sbjct: 274 ----ALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR--LQQHVKVII 327
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSA 209
ATP +L+D++ V + +K +V+DE D +L G+Q+ + I E +P QT L+SA
Sbjct: 328 ATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIP--NDCQTILVSA 385
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIK 269
T+ I+ L Q +P + + + + I +V+ K L ++ L K
Sbjct: 386 TIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVE-DPAKKKKLFEILNDKKLFK 444
Query: 270 GKTLIFVN-NIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
L+FV+ + + V + G+KS ++SE R++I++ + Y+++++T
Sbjct: 445 PPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVST 502
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 113 bits (283), Expect = 7e-25
Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 16/311 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
Q ++S GF+ T +Q++AIPL L K D+ A+A TGSGKTLA+L+P+++ + K
Sbjct: 20 QVVQSFGFQQMTPVQTAAIPLLLARK-DVSAEAVTGSGKTLAFLVPMLEILQRRHKETPW 78
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLN---LSSGNVSGNLLKSLLTEN 144
+++ PTRELA+Q+ EV+ + + ++++ LN + GN + +L E
Sbjct: 79 GPKEIGALVISPTRELARQISEVLAQFLE--HEDLEHLNQQLIVGGNSIEEDIATLRRET 136
Query: 145 PEILIATPAKLVDLLD--AQDVN----IDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL 198
P IL+ TP +L DL D+N + L+FLV+DE D +L G++ + I LP
Sbjct: 137 PCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPR 196
Query: 199 RKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFL- 257
++ +T L SAT ++ L + R+P ++ + + +L +Y V KF+
Sbjct: 197 QR--RTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEPELKFVA 254
Query: 258 LCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSE-LPANSRQHIVEEFN 316
L + + GK ++F L K +L N R ++VE+F
Sbjct: 255 LLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMKNKRANVVEKFR 314
Query: 317 KNVYQLLIATD 327
+L+ TD
Sbjct: 315 NTPQAVLLCTD 325
Score = 51.6 bits (122), Expect = 3e-06
Identities = 22/54 (40%), Positives = 37/54 (67%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKH 434
++RG+D + V+ +D P+TA S+VHR+GRTAR G G ++ F++P ++ H
Sbjct: 327 LARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFLLPSEDAYVH 380
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 113 bits (282), Expect = 9e-25
Identities = 96/312 (30%), Positives = 151/312 (47%), Gaps = 26/312 (8%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+++R++ PT IQ + IP L E RD I A TGSGKT+A+ P++ +
Sbjct: 15 ESLRAMKITQPTAIQKACIPKIL-EGRDCIGGAKTGSGKTIAFAGPMLTKWSE------- 66
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLT--ENP 145
D GV+L PTRELA Q+ E L S I+ + G ++++ L P
Sbjct: 67 DPSGMFGVVLTPTRELAMQIAEQFTAL--GSSMNIRVSVIVGGE---SIVQQALDLQRKP 121
Query: 146 EILIATPAKLVD-LLDAQDVNID---RLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS 201
+IATP +L ++ + D + R K+LV+DE D++LT + + L LP +
Sbjct: 122 HFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK 181
Query: 202 LQTFLMSATLNDDIQHLKQ---QFCRSP--AILKLNDDEVNKDQTKLIQYYVKVGEFDKF 256
QT L +AT+ D ++ L+ Q + P A + D V T I+ Y+ V E K
Sbjct: 182 RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIE-YILVPEHVKE 240
Query: 257 LLCYVIFKLGLIKGKT-LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEF 315
Y + + KT +IFVN L+ L+Q ++ L+S++P R + + F
Sbjct: 241 AYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRF 300
Query: 316 NKNVYQLLIATD 327
N ++LIATD
Sbjct: 301 RANAARILIATD 312
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 112 bits (281), Expect = 1e-24
Identities = 92/301 (30%), Positives = 149/301 (48%), Gaps = 18/301 (5%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF PT IQ IP+AL RD++A TGSGKTLA+LIP++Q I+D K+
Sbjct: 141 GFTEPTPIQCECIPVALNN-RDVLACGPTGSGKTLAFLIPLVQQIIDDKQT-----AGLK 194
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIK---CLNLSSGNVSGNLLKSLLTENP-EILI 149
G+I+ PT+ELA Q+ KL E K + L S ++ L ++++ +I+I
Sbjct: 195 GLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIII 254
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL--TFGYQEDLTKISERLPLRKSLQTFLM 207
+TP +L+D++ + +++ ++K L+ DE D + TF Q D + R P SL+ +
Sbjct: 255 STPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREP---SLRKAMF 311
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG-EFDKFLLCYVIFKLG 266
SAT+ +++ + Q P + + E T + Q + G E K + + + G
Sbjct: 312 SATIPSNVEEIAQSIMMDPVRVIIGHKEA--ANTNIEQKLIFCGNEEGKLIAIRQLVQEG 369
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
K +IF+ +I R L L I ++++E A R I+E F LI T
Sbjct: 370 EFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICT 429
Query: 327 D 327
D
Sbjct: 430 D 430
Score = 59.3 bits (142), Expect = 2e-08
Identities = 39/141 (27%), Positives = 71/141 (49%), Gaps = 22/141 (15%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIK 440
++RG+DFK V V+N+D+P ++++YVHRIGRT R G+SG +I+F
Sbjct: 432 LARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFY--------------- 476
Query: 441 SAKKDEKILGRIIKQQAKLGFELQPY-----NFDIKQVEGFRY-RMEDGFRAVTQVAIRE 494
K+D + II + G E+ + K+ E + + + +T V +
Sbjct: 477 -TKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAHKERKQITTVPKMD 535
Query: 495 ARIKELKQELLASEKLKRHFE 515
+ +QE++A+ K +++ E
Sbjct: 536 KAKRRRQQEMIAASKRRKNEE 556
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 112 bits (280), Expect = 2e-24
Identities = 106/444 (23%), Positives = 200/444 (44%), Gaps = 93/444 (20%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I SIGF+ P+ IQ +AI + + RDI A+A +G+GKT A+ + +Q
Sbjct: 51 KGIYSIGFETPSFIQKAAIQPII-DGRDIRAQAQSGTGKTGAFAVAALQIC-------DM 102
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+ T ++L TRE+A Q E L F + L+ S + K L + P I
Sbjct: 103 SQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAAD---KVALEKKPHI 159
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ TP ++ +++ ++++D +K VIDE D +L G+QE + I R+ + +Q +
Sbjct: 160 VVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQIAMF 219
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQT--KLIQYYVKVGE------------F 253
SAT +++ + ++ +P I+ L DQT + QY++ + +
Sbjct: 220 SATYDEEELRVSEEILINPVIIDLR----YNDQTLKGIRQYFIDLRKEPPFRKGREDYLL 275
Query: 254 DKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVE 313
K + Y IF+ + G++++F+N+ + + L + + ++++EL R+ +
Sbjct: 276 PKLVTLYDIFRKQRL-GQSIVFINSKEDARIVYDWLIRHEWECELISAELTQAERERTLN 334
Query: 314 EFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNV 373
F + LI++ GL
Sbjct: 335 RFRGGTGRCLISS--------------------GL------------------------- 349
Query: 374 EKDKEYGVSRGVDFKNVACVLNFDLPTTAK--SYVHRIGRTARAGKSGISISFVVPLKEF 431
+SRG+D +N++ V D+P+ + +Y+HRIGR+ R G+ GI+I+ V
Sbjct: 350 -------LSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINIVY----- 397
Query: 432 GKHKPSMIKSAKKDEKILGRIIKQ 455
+H+ +K+ K E+ IK+
Sbjct: 398 -EHE---LKNLKAIERFYNTTIKE 417
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 112 bits (279), Expect = 2e-24
Identities = 103/420 (24%), Positives = 176/420 (41%), Gaps = 79/420 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ ++ + +K P+ IQ +AIP+ LQ K D+I A TGSGKT A++IP+I I K
Sbjct: 262 KVLKKVNYKEPSSIQRAAIPVLLQRK-DLIGIAETGSGKTAAFIIPLIIAI--SKLPPLT 318
Query: 88 DEGATLG---VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTEN 144
+ LG V+L PTRELAQQ+ K +C+++ G+ +++
Sbjct: 319 ESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLG--FRCVSVVGGHAFEEQ-SFQMSQG 375
Query: 145 PEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS--- 201
I++ATP +L+D L+ + + + ++V+DE D +L G+++D+ KI LP +
Sbjct: 376 AHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEK 435
Query: 202 --------------LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYY 247
QT + SATL + +L + + P +L + + D+ +
Sbjct: 436 DGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEM 495
Query: 248 VKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANS 307
+ + K+ I + +IFVN + L G + L+
Sbjct: 496 IS-DDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQ 554
Query: 308 RQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQK 367
R+ +E+ +L+ATD +++ + S V + AK
Sbjct: 555 RERAIEQLRNKTADILVATDIAGRG----------------IDIPNVSLVLNYNMAK--- 595
Query: 368 KPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
+ + Y HRIGRT RAGKSG +I+F+ P
Sbjct: 596 ---------------------------------SIEDYTHRIGRTGRAGKSGTAITFLGP 622
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 112 bits (279), Expect = 2e-24
Identities = 85/254 (33%), Positives = 134/254 (52%), Gaps = 13/254 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI+ +GF+ T IQ +IP L RD++ A TGSGKTLA+LIP I+ + K +N
Sbjct: 102 KAIKEMGFETMTEIQKRSIP-PLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRN 160
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G +I+ PTRELA Q+ V ++L+ + Q + G + L + +
Sbjct: 161 GTGV---IIISPTRELALQIFGVAKELLKYHHQ---TFGIVIGGANRRAEADKLVKGVNL 214
Query: 148 LIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
L+ATP +L+D L + + L+ LVIDE D +L G+++++ +I + LP ++ QT L
Sbjct: 215 LVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP-SENRQTLL 273
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQT--KLIQYYVKVGEFDKFLLCYVIFK 264
SAT ++ L + P L +N D T L Q YV V +FLL + K
Sbjct: 274 FSATQTTKVEDL-ARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLK 332
Query: 265 LGLIKGKTLIFVNN 278
L K K ++F+++
Sbjct: 333 RNL-KKKVIVFMSS 345
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 112 bits (279), Expect = 2e-24
Identities = 103/444 (23%), Positives = 185/444 (41%), Gaps = 74/444 (16%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
+ G+ T IQ +PL K DI+A A TGSGKT A+L+P++ ++ K + E
Sbjct: 313 VERAGYTRTTPIQQYTLPLVADGK-DILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAE 371
Query: 90 GATLG--VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G +IL PTRELA Q+ K F Q + + G ++ KS + + I
Sbjct: 372 GGCYPRCIILTPTRELADQIYNEGRK---FSYQSVMEIKPVYGGINVGYNKSQIMKGCTI 428
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVD-LVLTFGYQEDLTKI--SERLPLRKSLQT 204
++ T ++ + + +D+ ++LV+DE D ++ + G+ ++ +I + +P QT
Sbjct: 429 IVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQT 488
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYV---KVGEFDKFLLCYV 261
+ SAT +Q ++ R + + D++ +IQ + + + DK L
Sbjct: 489 MMFSATFPSSVQEAARKLLREDYTM-ITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLG 547
Query: 262 I--------FKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVE 313
I + KT++FV L ++ + + ++ R ++
Sbjct: 548 IDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALK 607
Query: 314 EFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNV 373
F +LIAT +VE
Sbjct: 608 LFRSGAKPVLIAT--------------------AVVE----------------------- 624
Query: 374 EKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGK 433
RG+D K V V+N+D+P Y+HRIGRT R G SG + SF + L + +
Sbjct: 625 ---------RGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSF-ISLADDVQ 674
Query: 434 HKPSMIKSAKKDEKILGRIIKQQA 457
P ++++ E+++ +K+ A
Sbjct: 675 ILPQLVRTLADAEQVVPSWMKEAA 698
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 111 bits (278), Expect = 3e-24
Identities = 90/302 (29%), Positives = 145/302 (47%), Gaps = 11/302 (3%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI +GF T +Q+ IP L RD++ A TGSGKTLA+LIP I+ + K +N
Sbjct: 55 KAIEKMGFTTMTSVQARTIP-PLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRN 113
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G +++ PTRELA Q+ V +L+ F SQ + G + L + +
Sbjct: 114 GTGI---IVITPTRELALQIFGVARELMEFHSQ---TFGIVIGGANRRQEAEKLMKGVNM 167
Query: 148 LIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
LIATP +L+D L + + LK L+IDE D +L G+++++ +I + LP + Q+ L
Sbjct: 168 LIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILP-NEDRQSML 226
Query: 207 MSATLNDDIQHLKQQFCR-SPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT ++ L + R P + + + N L Q YV +FLL + K
Sbjct: 227 FSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKR 286
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
K K ++F+++ + +L + L+ + R + EF +LI
Sbjct: 287 NQ-KKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILIC 345
Query: 326 TD 327
TD
Sbjct: 346 TD 347
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 111 bits (278), Expect = 3e-24
Identities = 89/304 (29%), Positives = 158/304 (51%), Gaps = 20/304 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I S GF+ P+ IQS AI + K D+IA+A +G+GKT + I ++Q I D +K D
Sbjct: 36 RGIYSYGFEAPSSIQSRAITQIISGK-DVIAQAQSGTGKTATFTIGLLQAI-DLRKKDLQ 93
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+IL PTRELA Q+ +VV+ L + + + ++ G + LK + +
Sbjct: 94 ------ALILSPTRELASQIGQVVKNLGDYMN--VNAFAITGGKTLKDDLKKMQKHGCQA 145
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL--TFGYQEDLTKISERLPLRKSLQTF 205
+ TP +++D++ Q + ++ LV+DE D +L T G+++ + I +LP K+ Q
Sbjct: 146 VSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP--KNCQVV 203
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFD-KF-LLCYVIF 263
++SAT+N DI + ++F P + + DE++ + K QY V V + + KF LC +
Sbjct: 204 VVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK--QYVVNVDKEEWKFDTLCDIYD 261
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
L + + +IF N + L L Q ++ ++ R ++ +F ++L
Sbjct: 262 SLTIT--QCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
Query: 324 IATD 327
I+TD
Sbjct: 320 ISTD 323
Score = 54.7 bits (130), Expect = 4e-07
Identities = 20/44 (45%), Positives = 35/44 (79%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D + V+ V+N+DLP ++Y+HRIGR+ R G+ G++I+F+
Sbjct: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI 369
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 111 bits (278), Expect = 3e-24
Identities = 84/253 (33%), Positives = 129/253 (50%), Gaps = 18/253 (7%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
++I+ +GF T IQ+ AIP L D++ A TGSGKTLA+LIP ++ + K +N
Sbjct: 167 KSIKEMGFARMTQIQAKAIP-PLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRN 225
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLK----SLLTE 143
G +++ PTRELA Q V ++L+ + SQ + G V G + +L +
Sbjct: 226 GTGV---LVICPTRELAIQSYGVAKELLKYHSQTV-------GKVIGGEKRKTEAEILAK 275
Query: 144 NPEILIATPAKLVDLLDAQDVNI-DRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSL 202
+L+ATP +L+D L+ + I LKFLV+DE D +L ++EDL KI LP K+
Sbjct: 276 GVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLP--KTR 333
Query: 203 QTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVI 262
QT L SAT + ++ L + SP + +++ L Q Y V + L
Sbjct: 334 QTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTF 393
Query: 263 FKLGLIKGKTLIF 275
K K K ++F
Sbjct: 394 LKRFQGKKKIMVF 406
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 111 bits (277), Expect = 4e-24
Identities = 83/295 (28%), Positives = 154/295 (52%), Gaps = 19/295 (6%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
G++ P+ IQ +AIP+AL K D++A+A G+GKT AY IPV++ I K Q
Sbjct: 76 GWERPSPIQEAAIPIALSGK-DVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQ------- 127
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNV-SGNLLKSLLTENPEILIATP 152
+++VPTRELA Q ++ +L +I+ + + G + ++L+ + + +++IATP
Sbjct: 128 ALVMVPTRELALQTSQICIELAKHL--DIRVMVTTGGTILKDDILR--IYQKVQLIIATP 183
Query: 153 AKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLN 212
+++DL+D + ++ + LV+DE D +L+ +Q L + +LP K Q L SAT
Sbjct: 184 GRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLP--KDPQILLFSATFP 241
Query: 213 DDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKT 272
+++ ++ R P + L ++ K T QYY V E K +F L ++
Sbjct: 242 LTVKNFMEKHLREPYEINLMEELTLKGVT---QYYAFVQERQKVHCLNTLFS-KLQINQS 297
Query: 273 LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+IF N+ R L + + G +++++ R + +F + + + L+ +D
Sbjct: 298 IIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSD 352
Score = 52.0 bits (123), Expect = 3e-06
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHK 435
+RG+D + V V+NFD P A++Y+HRIGR+ R G GI+I+ + F H+
Sbjct: 355 TRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHR 408
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 110 bits (276), Expect = 5e-24
Identities = 90/309 (29%), Positives = 158/309 (51%), Gaps = 28/309 (9%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
A+++ F T IQ IP AL+ RDI+ A TGSGKTLA+++P+I+ + K +
Sbjct: 53 ALKNAHFITLTEIQKQCIPSALKG-RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDG 111
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSG-NVSGNLLK--SLLTENP 145
GA +++ PTRELA Q E + K+ + + S+G + GN K
Sbjct: 112 LGA---LVISPTRELAIQTFETLVKI-------GRLHSFSAGLIIGGNNYKEEKERLSRM 161
Query: 146 EILIATPAKLVDLLDAQDVNIDR--LKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQ 203
IL+ TP +L+ +D Q VN D L+ L++DE D +L G++ L I LP+ + Q
Sbjct: 162 NILVCTPGRLLQHID-QAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHR--Q 218
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIF 263
T L SAT ++ L + ++P + +++++ + + L Q+Y+ V +K + +
Sbjct: 219 TMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFI 278
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQF-----GIKSCILNSELPANSRQHIVEEFNKN 318
+ L K KT++F+++ +++ V E F GI L+ + +R + +F +
Sbjct: 279 RTHL-KFKTIVFLSSCK---QVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSS 334
Query: 319 VYQLLIATD 327
+ +L TD
Sbjct: 335 RHVVLFCTD 343
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 110 bits (275), Expect = 6e-24
Identities = 82/300 (27%), Positives = 149/300 (49%), Gaps = 10/300 (3%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+ S G + IQ + + A+ E RD+I +A TG+GKTLA+ IP+I I+ + A
Sbjct: 117 KALSSKGIEKLFPIQKAVLEPAM-EGRDMIGRARTGTGKTLAFGIPIIDKIIKYN-AKHG 174
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
L ++L PTRELA+QV EK + + + L G G ++ L ++
Sbjct: 175 RGRNPLCLVLAPTRELARQV----EKEFRESAPSLDTICLYGGTPIGQQMRQL-DYGVDV 229
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+ TP +++DL+ +N+ ++F+V+DE D +L G+ ED+ I E+LP ++ Q+ +
Sbjct: 230 AVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR--QSMMF 287
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SAT+ I+ L +++ +P + L D K + Y + + + + +
Sbjct: 288 SATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHA 347
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
GK ++F RL L + K L+ ++ + R+ + F + +L+ATD
Sbjct: 348 KGGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNILVATD 406
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 109 bits (273), Expect = 1e-23
Identities = 101/315 (32%), Positives = 155/315 (49%), Gaps = 32/315 (10%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ +R F T IQ+ +IP++LQ D++A A TGSGKTLA+L+PVI+ + K + +
Sbjct: 54 KGLRESSFIKLTEIQADSIPVSLQG-HDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFD 112
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTE---N 144
GA +I+ PTRELA Q+ EV+ K+ S S+G V G E
Sbjct: 113 GLGA---LIISPTRELAMQIYEVLTKIGSHTS-------FSAGLVIGGKDVKFELERISR 162
Query: 145 PEILIATPAKLVDLLD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQ 203
ILI TP +++ LD A +N L+ LV+DE D L G+++ L I L S Q
Sbjct: 163 INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVS--TLSPSRQ 220
Query: 204 TFLMSATLND---DIQHLKQQFCRSPAILKLNDDEVNKDQT---KLIQYYVKVGEFDKFL 257
T L SAT + D+ L ++ + D VNK+ + L Q+Y++V DK
Sbjct: 221 TLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLD 280
Query: 258 LCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQF-----GIKSCILNSELPANSRQHIV 312
+ + K L K K ++F+++ ++ V E F GI L+ +R +
Sbjct: 281 ILFSFIKSHL-KCKMIVFLSS---SKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETL 336
Query: 313 EEFNKNVYQLLIATD 327
++FN+ L ATD
Sbjct: 337 DKFNRAQQVCLFATD 351
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 109 bits (273), Expect = 1e-23
Identities = 102/401 (25%), Positives = 180/401 (44%), Gaps = 65/401 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ 86
Q + ++GF P+ IQ +A+PL L E +++IA++ +G+GKT A+++ ++ + K Q
Sbjct: 105 QGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 164
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ L PT ELA Q +V+E++ F + L L+ V GN L+ + +
Sbjct: 165 C-------LCLSPTYELALQTGKVIEQMGKFYPE----LKLAYA-VRGNKLERGQKISEQ 212
Query: 147 ILIATPAKLVDLLDA-QDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQT 204
I+I TP ++D + ++ ++K V+DE D+++ T G+Q+ +I LP ++ Q
Sbjct: 213 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--RNCQM 270
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
L SAT D + Q+ P ++KL +E D K QYYV D+
Sbjct: 271 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK--QYYVLCSSRDEKFQALCNLY 328
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+ + +IF + L L + G + +L+ E+ R ++E F + ++L+
Sbjct: 329 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 388
Query: 325 ATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRG 384
T+ ++V S V D L V+KD
Sbjct: 389 TTNVCARG----------------IDVEQVSVVINFD---------LPVDKDGN------ 417
Query: 385 VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++Y+HRIGRT R GK G++++ V
Sbjct: 418 ---------------PDNETYLHRIGRTGRFGKRGLAVNMV 443
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 109 bits (273), Expect = 1e-23
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 19/305 (6%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKAD----QNDEG 90
+ PT +Q AIP+ ++EKRD++A A TGSGKT A+L+P++ I + + G
Sbjct: 200 YTRPTPVQKHAIPI-IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258
Query: 91 A-------TLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTE 143
+ ++L PTRELA Q+ E K + S+ C+ ++ + L
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVVYGGADIGQQIRD--LER 315
Query: 144 NPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISER--LPLRKS 201
+L+ATP +LVD+++ + +D K+LV+DE D +L G++ + +I E+ +P +
Sbjct: 316 GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV 375
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYV 261
T + SAT +IQ L + F L + V + Q V V E DK
Sbjct: 376 RHTMMFSATFPKEIQMLARDFLDEYIFLAVG--RVGSTSENITQKVVWVEESDKRSFLLD 433
Query: 262 IFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
+ TL+FV L+ L G ++ + R+ + +F
Sbjct: 434 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 493
Query: 322 LLIAT 326
+L+AT
Sbjct: 494 ILVAT 498
Score = 55.1 bits (131), Expect = 3e-07
Identities = 24/43 (55%), Positives = 31/43 (71%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D NV V+NFDLP+ + YVHRIGRT R G G++ SF
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 544
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 109 bits (273), Expect = 1e-23
Identities = 98/310 (31%), Positives = 149/310 (47%), Gaps = 19/310 (6%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
IR + PT +Q AIP+ L E RD++A A TGSGKT A+ P+I I+ + +
Sbjct: 174 IRRCKYVKPTPVQRHAIPILL-EGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRG 232
Query: 90 GAT---LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
T L VIL PTRELA Q+ + +K F Q + ++ G N L +
Sbjct: 233 SRTVYPLAVILSPTRELASQIHDEAKK---FSYQTGVKVVVAYGGTPINQQLRELERGVD 289
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISER--LPLRKSLQT 204
IL+ATP +L DLL+ V++ ++FL +DE D +L G++ + KI E+ +P R QT
Sbjct: 290 ILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 349
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDK----FLLCY 260
L SAT +IQ L F + L + V ++Q V + DK L +
Sbjct: 350 LLFSATFPREIQRLAADFLANYIFLAVG--RVGSSTDLIVQRVEFVLDSDKRSHLMDLLH 407
Query: 261 VIFKLGLIKGK---TLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNK 317
+ G I+GK TL+FV L+ L G + ++ + R+ ++ F
Sbjct: 408 AQRENG-IQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKS 466
Query: 318 NVYQLLIATD 327
+L+ATD
Sbjct: 467 GRTPILVATD 476
Score = 57.8 bits (138), Expect = 5e-08
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D +VA V+NFDLP YVHRIGRT RAGKSG++ +F
Sbjct: 479 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 521
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 109 bits (272), Expect = 1e-23
Identities = 106/405 (26%), Positives = 165/405 (40%), Gaps = 69/405 (17%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
I+ F PT +Q ++P+ + RD++A A TGSGKT +L PV+ + Q +
Sbjct: 157 IKLARFTKPTPVQKYSVPI-VANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPES 215
Query: 90 GATL--------GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLL 141
+ VI+ PTRELA Q+ + +K +K + G+ GN L+ +
Sbjct: 216 QGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTY--RSWVKACVVYGGSPIGNQLREI- 272
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRK- 200
++L+ATP +L DLL+ +++ +K+LV+DE D +L G++ + I E +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPV 332
Query: 201 -SLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLC 259
QT + SAT DIQHL + F L + V + Q + V DK
Sbjct: 333 GERQTLMFSATFPADIQHLARDFLSDYIFLSVG--RVGSTSENITQKVLYVENQDKKSAL 390
Query: 260 YVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNV 319
+ G TLIFV +L L ++ ++ + + R+ + F
Sbjct: 391 LDLLSAS-TDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGA 449
Query: 320 YQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEY 379
LL+AT GL D VT N Y
Sbjct: 450 ATLLVAT---------------AVAARGL----DIPNVTHVIN----------------Y 474
Query: 380 GVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+ VD YVHRIGRT RAG +G++ +F
Sbjct: 475 DLPSDVD-----------------DYVHRIGRTGRAGNTGLATAF 502
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 108 bits (271), Expect = 2e-23
Identities = 109/451 (24%), Positives = 189/451 (41%), Gaps = 102/451 (22%)
Query: 30 IRSIGFKHPTLIQSSAIPLA--LQEKRDIIAKASTGSGKTLAYLIPVI------------ 75
I+ + F PT IQ IP +++ RD + ASTGSGKTLA++IP++
Sbjct: 189 IQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPS 248
Query: 76 QTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGN 135
I+D KA +IL PTREL QQ+ + +K+ S+E V G+
Sbjct: 249 LKIIDGPKA----------LILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGH 298
Query: 136 LLKSL---LTENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKI 192
L+ + L+E +IL+ATP +L+D L+ + + +++ LV+DE D ++ G+++ +T I
Sbjct: 299 SLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNI 358
Query: 193 SERLPLRK----SLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYV 248
++ + + QT + +AT+ I+ + + + P + V LIQ V
Sbjct: 359 LTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIG---VETGSEPLIQQVV 415
Query: 249 KVGEFDKFLLCYVIFKLGLIKGKTLIFVN-NIDRGYRLKLVLEQFGIKSCILNSELPANS 307
+ + D+ + + +IF+N + + ++ +K IL+
Sbjct: 416 EYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQ 475
Query: 308 RQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQK 367
R+H ++ F N Q++IAT N +
Sbjct: 476 REHSLQLFRTNKVQIMIAT-----------------------------------NVAARG 500
Query: 368 KPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
NV + +S+ +D Y+HRIGRT RA G ++SFV
Sbjct: 501 LDIPNVSLVVNFQISKKMD-----------------DYIHRIGRTGRAANEGTAVSFV-- 541
Query: 428 LKEFGKHKPSMIKSAKKDEKILGRIIKQQAK 458
SA +DE ++ + K K
Sbjct: 542 -------------SAAEDESLIRELYKYVRK 559
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 108 bits (271), Expect = 2e-23
Identities = 86/302 (28%), Positives = 156/302 (51%), Gaps = 19/302 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + G++ P+ +QS AI + + + RD+IA+A +G+GKT + I ++Q+I D D
Sbjct: 34 RGIYAYGYETPSAVQSRAI-IQICKGRDVIAQAQSGTGKTATFSIGILQSI-DLSVRD-- 89
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
T +IL PTRELA Q+ VV L + ++C G GN +K L +
Sbjct: 90 ----TQALILSPTRELAVQIQNVV--LALGDHMNVQCHACIGGTSVGNDIKKL-DYGQHV 142
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+ TP ++ D++ +++ +K L++DE D +L G++E + I LP Q ++
Sbjct: 143 VSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLP--PGTQVVVV 200
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFD-KF-LLCYVIFKL 265
SATL D+ + +F +P + + DE+ + K QY++ V + + KF LC + L
Sbjct: 201 SATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLK--QYFIAVEKEEWKFDTLCDLYDTL 258
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+ + +IF N+ + L + + ++ E+P R I+++F + ++LI
Sbjct: 259 TIT--QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLIC 316
Query: 326 TD 327
TD
Sbjct: 317 TD 318
Score = 55.8 bits (133), Expect = 2e-07
Identities = 21/44 (47%), Positives = 35/44 (78%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D + V+ V+N+DLP ++Y+HRIGR+ R G+ G++I+FV
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFV 364
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 108 bits (271), Expect = 2e-23
Identities = 82/300 (27%), Positives = 150/300 (49%), Gaps = 14/300 (4%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ AI L + D+IA+A +G+GKT + I ++Q I +
Sbjct: 45 RGIYAYGFEKPSAIQQRAI-LPCIKGYDVIAQAQSGTGKTATFAISILQQI-------EL 96
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
D AT ++L PTRELAQQ+ +VV L + + NV + K L E P I
Sbjct: 97 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHAC-IGGTNVRAEVQK-LQMEAPHI 154
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ TP ++ D+L+ + ++ +K V+DE D +L+ G+++ + I ++ L + Q L+
Sbjct: 155 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK--LNSNTQVVLL 212
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SAT+ D+ + ++F R P + + +E+ + + V+ E+ LC + L +
Sbjct: 213 SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 272
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+ +IF+N + L + ++ ++ R I+ EF ++LI TD
Sbjct: 273 T--QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Score = 54.7 bits (130), Expect = 4e-07
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V+ V+N+DLPT ++Y+HRIGR R G+ G++I+ V
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMV 376
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 108 bits (271), Expect = 2e-23
Identities = 86/300 (28%), Positives = 143/300 (47%), Gaps = 12/300 (4%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I G+K PT IQ IP+ L K D++A A TGSGKT +L+P+ + + H
Sbjct: 109 KGIMKKGYKVPTPIQRKTIPVILDGK-DVVAMARTGSGKTACFLLPMFERLKTHSA---- 163
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+ +IL PTRELA Q L+ ++L F + L L + + L ENP+I
Sbjct: 164 -QTGARALILSPTRELALQTLKFTKELGKFTGLKT-ALILGGDRMEDQF--AALHENPDI 219
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+IATP +LV + + + ++++V DE D + G+ E L +I RLP QT L
Sbjct: 220 IIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP--GGHQTVLF 277
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SATL + + P +++L+ D +Q K + V+ + +L +++ +
Sbjct: 278 SATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVR-EDTKAAVLLHLLHNVVR 336
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+ +T++FV L +L + + S L +R+ + +F LI TD
Sbjct: 337 PQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTD 396
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 108 bits (270), Expect = 2e-23
Identities = 88/304 (28%), Positives = 148/304 (47%), Gaps = 19/304 (6%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
+++ GF PT IQ P+AL RD++ A+TGSGKTL+Y +P I I D
Sbjct: 128 VKAEGFDKPTGIQCQGWPMALSG-RDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDG 186
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSL----LTENP 145
L +L PTRELA Q+ CS+ + + V G + KS L+
Sbjct: 187 PIVL--VLAPTRELAVQIQTE-------CSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGS 237
Query: 146 EILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTF 205
EI+IATP +L+D+L+ N+ R+ +LV+DE D +L G++ + KI ++ +R QT
Sbjct: 238 EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQ--IRPDRQTL 295
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDK--FLLCYVIF 263
+ SAT +++ L + P +++ E++ + Q V +F+K L Y+
Sbjct: 296 MWSATWPKEVKQLAADYLNDPIQVQVGSLELSASH-NITQIVEVVSDFEKRDRLNKYLET 354
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
+ KTLIF + + L + G + ++ + R +++EF ++
Sbjct: 355 ASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIM 414
Query: 324 IATD 327
+ATD
Sbjct: 415 VATD 418
Score = 55.1 bits (131), Expect = 3e-07
Identities = 23/43 (53%), Positives = 32/43 (73%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D K + V+N+D+P + YVHRIGRT RAG +G +ISF
Sbjct: 421 ARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISF 463
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 108 bits (270), Expect = 2e-23
Identities = 102/409 (24%), Positives = 172/409 (41%), Gaps = 75/409 (18%)
Query: 33 IGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGAT 92
+GF+ T +Q+S IP+ L +D++ + TGSGKT A++IPV++ ++ + + A
Sbjct: 25 MGFETMTPVQASTIPM-LAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAH 83
Query: 93 L-GVILVPTRELAQQVLEVVEKLIVFCSQE---IKCLNLSSGNVSG--NLLKSLLTENPE 146
+I+ PTREL++Q+ VV + + IKC L N + + + + L P+
Sbjct: 84 FHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQ 143
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
ILI TP +++D L V +V+DE D +L + +D KI LP K +T L
Sbjct: 144 ILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLP--KQRRTGL 201
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKL----------IQYYVKVGEFDKF 256
SAT+ + + R+P + +N KL +Q V + KF
Sbjct: 202 FSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQLLVSILNNYKF 261
Query: 257 LLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFN 316
C V F + F+ + G R LV E ++ L+ +L ++R + F
Sbjct: 262 KKCIVYFPTCVSVSYFYSFIQYL--GKRNILVNE---VEIFSLHGKLQTSARTKTLTAFT 316
Query: 317 KNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKD 376
++ ++ T D
Sbjct: 317 DSLSNSVLFTTDV----------------------------------------------- 329
Query: 377 KEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D +V V+ D PT ++HR GRT RA + G +I+F+
Sbjct: 330 ----AARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFL 374
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 108 bits (270), Expect = 2e-23
Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 20/300 (6%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
I +G++ P+ IQ +IP+AL RDI+A+A G+GK+ AYLIP+++ LD KK +
Sbjct: 100 IFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLER-LDLKKDNIQ-- 155
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+++VPTRELA QV ++ ++ N+ ++++ L + ++I
Sbjct: 156 ----AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR--LDDTVHVVI 209
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISER--LPLRKSLQTFLM 207
ATP +++DL+ +D ++ +V+DE D +L+ +D +I E L L K+ Q L
Sbjct: 210 ATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS----QDFVQIMEDIILTLPKNRQILLY 265
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SAT +Q + P + L ++ K T QYY V E K +F L
Sbjct: 266 SATFPLSVQKFMNSHLQKPYEINLMEELTLKGVT---QYYAYVTERQKVHCLNTLFS-RL 321
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+++IF N+ R L + Q G +++++ R + +F + + L+ TD
Sbjct: 322 QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 381
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 108 bits (270), Expect = 2e-23
Identities = 99/401 (24%), Positives = 160/401 (39%), Gaps = 59/401 (14%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
G+ T IQ +PL + + DI+A A TGSGKT A+L+P++ ++D + EG
Sbjct: 571 GYTKTTPIQQYTLPL-IHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCY 629
Query: 94 G--VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIAT 151
+IL PTREL Q+ K EI+ + G ++ K + + I++ T
Sbjct: 630 PRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVY---GGLAVGYNKGQIEKGATIIVGT 686
Query: 152 PAKLVDLLDAQDVNIDRLKFLVIDEVDLVLT---FGYQEDLTKISERLPLRKSLQTFLMS 208
++ + + +D+ +F V+DE D ++ FG D E +P +++ QT + S
Sbjct: 687 VGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFS 746
Query: 209 ATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLI 268
AT D +Q + + I+ L D++ ++Q EF+K
Sbjct: 747 ATFPDSVQEAARNHLKEGYIM-LAIDKIGAANKCVLQ------EFEK------------- 786
Query: 269 KGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDD 328
DR + +LE GI E N VY
Sbjct: 787 ----------CDRSEKKDKLLEILGIDI------------DSYTTEKNSEVYTKKTIVFV 824
Query: 329 TXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQ----KKPKLNVEKDKEYGVSRG 384
+ + + + A +Q KP L E RG
Sbjct: 825 SQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAE----RG 880
Query: 385 VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+D K V V+N+D+P Y+HRIGRT R G +G + SF+
Sbjct: 881 LDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFI 921
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 107 bits (268), Expect = 4e-23
Identities = 100/401 (24%), Positives = 180/401 (43%), Gaps = 65/401 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ 86
Q + ++GF P+ IQ +A+P+ L E +++IA++ +G+GKT A+++ ++ + + Q
Sbjct: 104 QGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQ 163
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ L PT ELA Q +V+E++ F + L L+ V GN L+ + +
Sbjct: 164 C-------LCLSPTYELALQTGKVIEQMGKFYPE----LKLAYA-VRGNKLERGQKISEQ 211
Query: 147 ILIATPAKLVDLLDA-QDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQT 204
I+I TP ++D + ++ ++K V+DE D+++ T G+Q+ +I LP ++ Q
Sbjct: 212 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--RNCQM 269
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
L SAT D + Q+ P ++KL +E D K QYYV D+
Sbjct: 270 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK--QYYVLCSSRDEKFQALCNLY 327
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+ + +IF + L L + G + +L+ E+ R ++E F + ++L+
Sbjct: 328 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 387
Query: 325 ATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRG 384
T+ ++V S V D L V+KD
Sbjct: 388 TTNVCARG----------------IDVEQVSVVINFD---------LPVDKDGN------ 416
Query: 385 VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++Y+HRIGRT R GK G++++ V
Sbjct: 417 ---------------PDNETYLHRIGRTGRFGKRGLAVNMV 442
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 107 bits (268), Expect = 4e-23
Identities = 79/300 (26%), Positives = 147/300 (48%), Gaps = 10/300 (3%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A++ G + IQ + + A+ E RD+I +A TG+GKTLA+ IP+I I+
Sbjct: 129 KALKGRGIEKLFPIQKAVLEPAM-EGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGR 187
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+ ++L PTRELA+QV EK + + + L G G ++ L ++
Sbjct: 188 GKNPQC-LVLAPTRELARQV----EKEFRESAPSLDTICLYGGTPIGQQMREL-NYGIDV 241
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+ TP +++DL+ +N+ ++F+V+DE D +L G+ ED+ I ++LP ++ Q+ +
Sbjct: 242 AVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKR--QSMMF 299
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SAT+ I+ L +++ +P + L D K + Y + + + + + K
Sbjct: 300 SATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHG 359
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
GK ++F RL L + K L+ ++ R+ + F + +L+ATD
Sbjct: 360 KGGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILVATD 418
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 107 bits (268), Expect = 4e-23
Identities = 83/294 (28%), Positives = 143/294 (48%), Gaps = 17/294 (5%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF+ P+ IQ +IP+AL DI+A+A G+GKT A+ IP ++ I Q
Sbjct: 173 GFEKPSPIQEESIPIALTGS-DILARAKNGTGKTGAFCIPTLEKIDPENNVIQ------- 224
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
VILVPTRELA Q +V ++L + E+ +++G S L + +L+ TP
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVM---VTTGGTSLRDDIMRLYQPVHLLVGTPG 281
Query: 154 KLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLND 213
+++DL + LV+DE D +L+ +Q + ++ + LP +S Q + SAT
Sbjct: 282 RILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLP--ESRQILMFSATFPV 339
Query: 214 DIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTL 273
++ K ++ + P I+ L D T QYY V E K +F L +++
Sbjct: 340 TVKSFKDRYLKKPYIINLMDQLTLMGVT---QYYAFVEERQKVHCLNTLFS-KLQINQSI 395
Query: 274 IFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
IF N+++R L + + G +++++ + R + +F + L+ TD
Sbjct: 396 IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTD 449
Score = 51.2 bits (121), Expect = 4e-06
Identities = 20/44 (45%), Positives = 33/44 (74%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D + V V+NFD P T++SY+HR+GR+ R G G++++ V
Sbjct: 452 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV 495
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 107 bits (268), Expect = 4e-23
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 12/253 (4%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI+ +GF T IQS ++ L + RD++ A TGSGKTLA+LIP ++ I + +N
Sbjct: 183 RAIKEMGFTEMTEIQSKSLT-PLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRN 241
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G +I+ PTREL+ Q V+++L+ + L G + + L + I
Sbjct: 242 GTGV---IIISPTRELSMQTFGVLKELM---AHHHHTYGLVMGGSNRQVESEKLGKGINI 295
Query: 148 LIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
L+ATP +L+D L ++ D L+ L+IDEVD +L G++E+L +I LP R+ QT L
Sbjct: 296 LVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRR--QTML 353
Query: 207 MSATLNDDIQHLKQQFCRS-PAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
SAT I+ L + +S P + ++D++ L Q Y+ + L+ + K
Sbjct: 354 FSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKK 413
Query: 266 GLIKGKTLIFVNN 278
K K ++F ++
Sbjct: 414 NR-KKKVMVFFSS 425
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 107 bits (267), Expect = 5e-23
Identities = 102/407 (25%), Positives = 173/407 (42%), Gaps = 86/407 (21%)
Query: 30 IRSIG--FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
I+++G + PT+IQ IP +L + R++I +A TG GKT+ +LIP+I+ KK
Sbjct: 110 IKALGKEYSAPTIIQKYCIP-SLVDGRNLICRAPTGMGKTMCFLIPIIERHRQMKKPQ-- 166
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
I+ PTREL +Q+ KL+ I+ ++ + G +I
Sbjct: 167 ------ACIISPTRELCEQIRVEASKLVA--GSRIRVVS-----IYGKKQDLPSYSGVDI 213
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ATP +L+DLL + V++ ++ V+DE D +L G++ + +I +P K+ QT L
Sbjct: 214 VVATPGRLIDLLHRKKVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFVP--KNTQTCLF 271
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLI-QYYVKVGEFDKFLLCYV----- 261
SAT + + + F + E++ + K I Q V+V K LL +
Sbjct: 272 SATYSPKLTRMINYFLPEDKV----SIEISSETLKNIRQEIVEVRNKKKMLLNILKGPDI 327
Query: 262 ----IFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNK 317
+++ + K L+FV ++ VL++ GI L+ + R ++ F
Sbjct: 328 NLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRN 387
Query: 318 NVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDK 377
+ +++AT +++ D V D
Sbjct: 388 GRFPVMVATSVAARG----------------IDIKDVKLVINYD---------------- 415
Query: 378 EYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+P K Y+HRIGRT R GKSG SISF
Sbjct: 416 --------------------IPKDIKEYIHRIGRTGREGKSGKSISF 442
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 107 bits (267), Expect = 5e-23
Identities = 110/403 (27%), Positives = 174/403 (42%), Gaps = 68/403 (16%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKK--ADQNDEGAT 92
F+ P+ IQS P L + RD+I A TGSGKTLA+ IP I +L K + +
Sbjct: 134 FEKPSPIQSHTWPFLL-DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNP 192
Query: 93 LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATP 152
++L PTRELA Q+ +V+ + C +K + + G+ G + S + +I+I TP
Sbjct: 193 TCLVLSPTRELAVQISDVLREAGEPCG--LKSICVYGGSSKGPQI-SAIRSGVDIVIGTP 249
Query: 153 AKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLN 212
+L DL+++ + + + F+V+DE D +L G++E + I K Q + SAT
Sbjct: 250 GRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSN--TNKVRQMVMFSATWP 307
Query: 213 DDIQHLKQQFCRS---PAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIK 269
D+ L Q+F I+ D N D ++I+ + D+ L+ + K
Sbjct: 308 LDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERAR-DQRLIALLEKYHKSQK 366
Query: 270 GKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDT 329
+ L+F RL+ L+Q G K+ ++ + R + F + LL+ATD
Sbjct: 367 NRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVA 426
Query: 330 XXXXXXXXXXXXXXXXXGLVEVVDDST--VTTKDNAKKQKKPKLNVEKDKEYGVSRGVDF 387
VEVV + T +TT+D
Sbjct: 427 ARGLDIPD-----------VEVVINYTFPLTTED-------------------------- 449
Query: 388 KNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKE 430
YVHRIGRT RAGK G++ +F PL +
Sbjct: 450 -----------------YVHRIGRTGRAGKKGVAHTFFTPLNK 475
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 107 bits (266), Expect = 7e-23
Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 19/305 (6%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDH------KKADQND 88
+ PT +Q AIP+ ++ KRD++A A TGSGKT A+L+P++ I K +N
Sbjct: 198 YTRPTPVQKHAIPI-IKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENG 256
Query: 89 EGAT-----LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTE 143
+ ++L PTRELA Q+ E K + S+ C+ ++ + L
Sbjct: 257 RYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVVYGGADIGQQIRD--LER 313
Query: 144 NPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISER--LPLRKS 201
+L+ATP +LVD+++ + +D K+LV+DE D +L G++ + +I E+ +P +
Sbjct: 314 GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV 373
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYV 261
T + SAT +IQ L + F L + V + Q V V + DK
Sbjct: 374 RHTMMFSATFPKEIQMLARDFLDEYIFLAVG--RVGSTSENITQKVVWVEDLDKRSFLLD 431
Query: 262 IFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
I TL+FV L+ L G ++ + R+ + +F
Sbjct: 432 ILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 491
Query: 322 LLIAT 326
+L+AT
Sbjct: 492 ILVAT 496
Score = 55.1 bits (131), Expect = 3e-07
Identities = 24/43 (55%), Positives = 31/43 (71%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D NV V+NFDLP+ + YVHRIGRT R G G++ SF
Sbjct: 500 ARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 542
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 107 bits (266), Expect = 7e-23
Identities = 84/294 (28%), Positives = 146/294 (49%), Gaps = 17/294 (5%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF+ P+ IQ +IP+AL DI+A+A G+GKT A+ IPV++ K D N+
Sbjct: 143 GFEKPSPIQEESIPIALTGS-DILARAKNGTGKTGAFCIPVLE------KIDPNNN-VIQ 194
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
+ILVPTRELA Q +V ++L + + ++ +++G S L + +L+ TP
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVM---VTTGGTSLRDDIMRLHQPVHLLVGTPG 251
Query: 154 KLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLND 213
+++DL + LV+DE D +L+ +Q L ++ + LP ++ Q + SAT
Sbjct: 252 RILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLP--QNRQFLMFSATFPV 309
Query: 214 DIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTL 273
++ K + R P ++ L D T QYY V E K +F L +++
Sbjct: 310 TVKAFKDRHLRKPYVINLMDQLTLMGVT---QYYAFVEERQKVHCLNTLFS-KLQINQSI 365
Query: 274 IFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
IF N+++R L + + G +++++ + R + EF + L+ TD
Sbjct: 366 IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTD 419
Score = 51.2 bits (121), Expect = 4e-06
Identities = 20/44 (45%), Positives = 33/44 (74%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D + V V+NFD P T++SY+HR+GR+ R G G++++ V
Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV 465
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 106 bits (265), Expect = 9e-23
Identities = 95/323 (29%), Positives = 148/323 (45%), Gaps = 41/323 (12%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
Q I+ G+ PT +Q ++IP+ + RD++A A TGSGKT +L P++ D A
Sbjct: 182 QNIKLSGYTQPTPVQKNSIPI-VTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVP 240
Query: 88 -DEGATLG----------VILVPTRELAQQVLEVVEKLIVFC--SQEIKCLNLSSGNVSG 134
D+ A +G +IL PTREL Q+ E K FC S C ++
Sbjct: 241 VDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRK---FCYRSWVRPCAVYGGADIRA 297
Query: 135 NLLKSLLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISE 194
+ + + + ++L ATP +LVDL+D +++ +KFLV+DE D +L G++ + I E
Sbjct: 298 QIRQ--IDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVE 355
Query: 195 RLPLR--KSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGE 252
+ + QT + SAT DIQ L + F + L + V + Q V V +
Sbjct: 356 GADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVG--RVGSTSENITQKVVHVED 413
Query: 253 FDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANS----- 307
+K I +G TLIFV R+ L + +LNS PA S
Sbjct: 414 SEKRSYLLDILHTLPPEGLTLIFVET----KRMADTLTDY-----LLNSNFPATSIHGDR 464
Query: 308 ----RQHIVEEFNKNVYQLLIAT 326
R+ +E F +++AT
Sbjct: 465 TQRERERALELFRSGRTSIMVAT 487
Score = 57.0 bits (136), Expect = 8e-08
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
SRG+D NV V+N+DLPT YVHRIGRT RAG +G +++F
Sbjct: 491 SRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAF 533
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 106 bits (264), Expect = 1e-22
Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 16/194 (8%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
A+ + GFK T +Q++AIPL L+ K D++ +A TGSGKTLAYL+P + + D+
Sbjct: 15 AVAAQGFKKMTPVQANAIPLFLKNK-DLVVEAVTGSGKTLAYLLPCFDKV-TRRDTDETG 72
Query: 89 EGATLGVILVPTRELAQQVLEVVEKLIVFCSQE-------IKCLNLSSGNVSGNLLKSLL 141
GA +I+ PTRELA Q+ V ++L+ + + + + N L S
Sbjct: 73 LGA---LIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFR 129
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS 201
+NP ++I TP +L ++L ++ L+ L++DE D ++ G+Q L I +LP K
Sbjct: 130 EKNPSVVIGTPGRLNEML--SHISSKHLEILILDEADTLIDMGFQRTLQSIISQLP--KQ 185
Query: 202 LQTFLMSATLNDDI 215
+T L SAT+ND +
Sbjct: 186 RRTGLFSATMNDTV 199
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 106 bits (264), Expect = 1e-22
Identities = 80/300 (26%), Positives = 148/300 (48%), Gaps = 14/300 (4%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ AI + + D+IA+A +G+GKT + I ++Q + K Q
Sbjct: 46 RGIYAYGFEKPSAIQQRAI-IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ- 103
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
++L PTRELAQQ+ +V+ L + C G N ++ L E P I
Sbjct: 104 ------ALVLAPTRELAQQIQKVILALGDYMGAT--CHACIGGTNVRNEMQKLQAEAPHI 155
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ TP ++ D+L+ + ++ +K V+DE D +L+ G+++ + +I ++ L S+Q
Sbjct: 156 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK--LNTSIQVVFA 213
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SAT+ D+ + ++F R P + + +E+ + K V+ E+ LC + L +
Sbjct: 214 SATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 273
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+ +IF+N + L + L+ ++ R I+ EF ++LI TD
Sbjct: 274 T--QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Score = 57.0 bits (136), Expect = 8e-08
Identities = 22/45 (48%), Positives = 36/45 (79%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V+ V+N+DLPT ++Y+HRIGR R G+ G++I+FV
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFV 377
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 106 bits (264), Expect = 1e-22
Identities = 76/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTIL-DHKKADQN 87
A+R +GF + T +QS+ IPL ++ K D+ A+A TGSGKTLA++IP+++ +L +K ++
Sbjct: 23 ALRELGFPYMTPVQSATIPLFMRNK-DVAAEAVTGSGKTLAFVIPILEILLRREEKLKKS 81
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
GA +I+ PTRELA Q+ EV+ + + L + N G ++ + I
Sbjct: 82 QVGA---IIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRN-PGEDVERFKQQGGNI 137
Query: 148 LIATPAKLVDLLDAQDVNID------RLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS 201
++ATP +L D+ + +D L LV+DE D +L G++ + I E LP K
Sbjct: 138 IVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLP--KQ 195
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEV-----NKDQTKLIQYYVKVGEFDKF 256
+T L SAT ++++L + R+P + + + V K ++L YY+ +KF
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 105 bits (263), Expect = 1e-22
Identities = 86/299 (28%), Positives = 141/299 (46%), Gaps = 9/299 (3%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
++ +GF+ PT IQ A P+A+ RD++ ++TGSGKTL+Y +P I I D
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSG-RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDG 195
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
L +L PTRELA Q+ + K S I+ + G G ++ L+ EI I
Sbjct: 196 PIVL--VLAPTRELAVQIQQECTKFGK--SSRIRNTCVYGGVPRGPQIRDLI-RGVEICI 250
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSA 209
ATP +L+D+LD+ N+ R+ +LV+DE D +L G++ + KI ++ +R QT + SA
Sbjct: 251 ATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQ--IRPDRQTVMFSA 308
Query: 210 TLNDDIQHLKQQFCRSPAILKLND-DEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLI 268
T ++Q L + + + + D K I V + L + L
Sbjct: 309 TWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDR 368
Query: 269 KGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
K LIF + L Q G + ++ + + R ++ EF +++ATD
Sbjct: 369 DNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATD 427
Score = 52.0 bits (123), Expect = 3e-06
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISIS-FVVPLKEFGKHKPSMIK 440
SRG+D K + V N+D P + YVHRIGRT RAG G + + F + + S++
Sbjct: 430 SRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILS 489
Query: 441 SAKKD 445
AK+D
Sbjct: 490 EAKQD 494
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 105 bits (262), Expect = 2e-22
Identities = 82/288 (28%), Positives = 139/288 (47%), Gaps = 25/288 (8%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
I GF T +Q IP L+ K D++ ++ TG+GKT+A+L P++ I D K +
Sbjct: 19 IEENGFGKMTEVQLKCIPEVLKGK-DVVVQSPTGTGKTMAFLAPILSCIYDGK--GRGRP 75
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
G T V++ PTRELA Q+ EV V C I G +S + E I +
Sbjct: 76 GVT-AVVITPTRELALQIREVAGLFDVKCECFI-------GGMSIEEDYKRMKEEFSIAV 127
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSA 209
TP +L++++ + L LV+DE D +L FG++E L ++ +LP ++ T L SA
Sbjct: 128 GTPGRLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLP--RNRVTGLFSA 185
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIK 269
T ND + L + F R+P + + ++E+ + Y+ V +K L+ + ++
Sbjct: 186 TRNDSVDKLSRVFLRNPVSINVGNNEM-----PVALEYIVVSPMEKLLVL-----MDIVT 235
Query: 270 GKTLI--FVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEF 315
G+ I F + + LV C ++ ++ + R + EEF
Sbjct: 236 GRRCIVFFATCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEF 283
Score = 52.8 bits (125), Expect = 1e-06
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
+RG+DF+ V V++FD+P S VHR GRTAR G G S+ FV+P
Sbjct: 297 ARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMP 342
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 105 bits (262), Expect = 2e-22
Identities = 83/304 (27%), Positives = 151/304 (49%), Gaps = 23/304 (7%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ AIP A+ + RD+IA+A +G+GKT + I V+Q++ + Q
Sbjct: 39 RGIYAYGFEKPSAIQQRAIP-AILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQ- 96
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+IL PTRELA Q+ +VV L + + ++C G G ++ L +
Sbjct: 97 ------ALILSPTRELAVQIQKVVLALGDYMN--VQCHACIGGTNLGEDIRKL-DYGQHV 147
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+ TP ++ D++ +++ +K LV+DE D +L G++E L I LP Q L+
Sbjct: 148 VSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLP--PGAQVVLL 205
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG----EFDKFLLCYVIF 263
SATL +I + +F P + + DE+ + K Q++V V +FD + Y
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK--QFFVAVDREEWKFDTLIDLYDTL 263
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
+ + ++F N + L +++ ++ ++ R +++EF ++L
Sbjct: 264 TI----TQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVL 319
Query: 324 IATD 327
I+TD
Sbjct: 320 ISTD 323
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 105 bits (261), Expect = 3e-22
Identities = 82/304 (26%), Positives = 151/304 (48%), Gaps = 23/304 (7%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ A+P A+ + RD+IA+A +G+GKT + I V+Q++ + Q
Sbjct: 39 RGIYAYGFEKPSAIQQRAVP-AILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQ- 96
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+IL PTRELA Q+ +VV L + + ++C G G ++ L +
Sbjct: 97 ------ALILSPTRELAVQIQKVVLALGDYMN--VQCHACIGGTNLGEDIRKL-DYGQHV 147
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+ TP ++ D++ +++ +K LV+DE D +L G++E L I LP Q L+
Sbjct: 148 VSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLP--PGAQVVLL 205
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG----EFDKFLLCYVIF 263
SATL +I + +F P + + DE+ + K Q++V V +FD + Y
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK--QFFVAVDREEWKFDTLIDLYDTL 263
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
+ + ++F N + L +++ ++ ++ R +++EF ++L
Sbjct: 264 TI----TQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVL 319
Query: 324 IATD 327
I+TD
Sbjct: 320 ISTD 323
Score = 53.1 bits (126), Expect = 1e-06
Identities = 21/44 (47%), Positives = 33/44 (74%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D V+ V+N+DLP + Y+HRIGR+ R G+ G++I+FV
Sbjct: 326 ARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 104 bits (260), Expect = 3e-22
Identities = 88/310 (28%), Positives = 143/310 (45%), Gaps = 26/310 (8%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTI--LDHKKADQNDEGAT 92
+ PT +Q AIP+ + RD++A A TGSGKT A+L+P++ + L H Q+ +
Sbjct: 315 YDKPTPVQKHAIPIIING-RDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYS 373
Query: 93 ------LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
LG++L PTRELA Q+ E +K ++ L GN + ++ L
Sbjct: 374 RRKQYPLGLVLAPTRELATQIFEEAKKFAY--RSRMRPAVLYGGNNTSEQMREL-DRGCH 430
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERL--PLRKSLQT 204
+++ATP +L D++ V ++ ++FLV+DE D +L G++ + +I E+L P QT
Sbjct: 431 LIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQT 490
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
+ SAT IQ L F + L + V + Q + V E DK Y++
Sbjct: 491 LMFSATFPKQIQELASDFLSNYIFLAVG--RVGSTSENITQTILWVYEPDK--RSYLLDL 546
Query: 265 LGLIK--------GKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFN 316
L I+ TLIFV L+ L Q ++ + R+ + F
Sbjct: 547 LSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFR 606
Query: 317 KNVYQLLIAT 326
+L+AT
Sbjct: 607 SGDCPILVAT 616
Score = 53.1 bits (126), Expect = 1e-06
Identities = 23/43 (53%), Positives = 31/43 (71%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D +V V+NFDLP+ + YVHRIGRT R G G++ SF
Sbjct: 620 ARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 662
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 104 bits (259), Expect = 4e-22
Identities = 84/295 (28%), Positives = 150/295 (50%), Gaps = 19/295 (6%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
G++ P+ IQ ++I +AL + DI+A+A G+GKT AY IPVI+ I KA Q
Sbjct: 62 GWEKPSPIQEASIGVALTGQ-DILARAKNGTGKTGAYCIPVIEKIQPALKAIQ------- 113
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSG-NVSGNLLKSLLTENPEILIATP 152
+++VPTRELA Q ++ +L ++K + + G ++ ++++ L ++IATP
Sbjct: 114 AMVIVPTRELALQTSQICVELSKHI--QLKVMVTTGGTDLRDDIMR--LNGTVHLVIATP 169
Query: 153 AKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLN 212
+++DL++ ++ K LV+DE D +L+ +Q L ++ LP K Q L SAT
Sbjct: 170 GRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLP--KERQVMLYSATFP 227
Query: 213 DDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKT 272
+ + Q+ P + L ++ T QYY V E K +F+ L ++
Sbjct: 228 NTVTSFMQKHMHKPYEINLMEELTLLGVT---QYYAFVQEKQKVHCLNTLFR-KLQINQS 283
Query: 273 LIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+IF N+ R L + + G ++S++ N R + +F + + L+ +D
Sbjct: 284 IIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSD 338
Score = 50.4 bits (119), Expect = 7e-06
Identities = 20/45 (44%), Positives = 33/45 (72%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V V+NFD P A++Y+HRIGR+ R G G++I+ +
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLI 384
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 103 bits (258), Expect = 6e-22
Identities = 69/204 (33%), Positives = 114/204 (55%), Gaps = 9/204 (4%)
Query: 39 TLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILV 98
T +Q +IP+ L E RD + ++ TGSGKTLAY IPV+Q++ + Q +G ++LV
Sbjct: 255 TSVQKQSIPVLL-EGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDG-PYALVLV 312
Query: 99 PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVD- 157
PTRELA Q + V+KL+ + + + G K+ L + ILI+TP +LVD
Sbjct: 313 PTRELALQSFDTVQKLLKPFTWIVP--GVLMGGEKRKSEKARLRKGINILISTPGRLVDH 370
Query: 158 LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLR-KSLQTFLMSATLNDDIQ 216
+ ++++ RL++LV DE D +L G+++D+T I + + Q L+SATL + +
Sbjct: 371 IKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVT 430
Query: 217 HLKQQFCRSP---AILKLNDDEVN 237
L P ++L + D++N
Sbjct: 431 RLADISLHDPVSISVLDKSHDQLN 454
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 103 bits (258), Expect = 6e-22
Identities = 69/204 (33%), Positives = 114/204 (55%), Gaps = 9/204 (4%)
Query: 39 TLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILV 98
T +Q +IP+ L E RD + ++ TGSGKTLAY IPV+Q++ + Q +G ++LV
Sbjct: 255 TSVQKQSIPVLL-EGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDG-PYALVLV 312
Query: 99 PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVD- 157
PTRELA Q + V+KL+ + + + G K+ L + ILI+TP +LVD
Sbjct: 313 PTRELALQSFDTVQKLLKPFTWIVP--GVLMGGEKRKSEKARLRKGINILISTPGRLVDH 370
Query: 158 LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLR-KSLQTFLMSATLNDDIQ 216
+ ++++ RL++LV DE D +L G+++D+T I + + Q L+SATL + +
Sbjct: 371 IKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVT 430
Query: 217 HLKQQFCRSP---AILKLNDDEVN 237
L P ++L + D++N
Sbjct: 431 RLADISLHDPVSISVLDKSHDQLN 454
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 103 bits (258), Expect = 6e-22
Identities = 132/528 (25%), Positives = 217/528 (41%), Gaps = 95/528 (17%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
+ +G K T IQ IP A+ +D I A TGSGKT A+ +P+++ + +
Sbjct: 22 LTKLGLKGATPIQQKCIP-AILAGQDCIGAAKTGSGKTFAFALPILERL-------SEEP 73
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+ ++L PT ELA Q+ E + L+ + ++ + + SG + L + P I++
Sbjct: 74 VSHFALVLTPTHELAYQISE--QFLVAGQAMGVR-VCVVSGGTDQMVESQKLMQRPHIVV 130
Query: 150 ATPAKLVDLLDAQDV-NIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMS 208
A P +L D L D + D LK+LV+DE D +L + E L+ I LP K+ Q S
Sbjct: 131 AMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP--KTRQNLFFS 188
Query: 209 ATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVI---FKL 265
AT+ D I+ S D +V +T L Q Y+ ++D+ ++ ++
Sbjct: 189 ATMKDFIKESSIFPIASDCFEWSQDSDVATVET-LDQRYLLCADYDRDMVLIEALRKYRE 247
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+IF N L + L+ I + L+ + R + F N + LIA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD GL D +V N + PK
Sbjct: 308 TD---------------VAARGL----DIPSVELVMNHMLPRTPK--------------- 333
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISIS-FVVP-----LKEFGKHKPSMI 439
Y+HR+GRTARAG+ G+SIS F P L + + +
Sbjct: 334 ------------------EYIHRVGRTARAGRKGMSISIFRFPRDLELLAAIEEEINTKL 375
Query: 440 KSAKKDEKILGRIIKQ----QAKLGFELQPYNFDIKQVEGFRYR-----------MEDGF 484
D++++ RI Q + + +L +FD ++ + +R + ME +
Sbjct: 376 TEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFD-ERAQNYRRKTWIMEGKDPDQMEALY 434
Query: 485 RAVTQVAIREARIKELKQ--ELLASEKLKRHF-EENPHDLESLRHDKE 529
R + +RE R K Q E ASE+ K +E ++S R +K+
Sbjct: 435 RKKQKDKLREIRRKRKLQHAEPAASEEGKALLQDERFKSVDSARFEKK 482
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 103 bits (257), Expect = 7e-22
Identities = 79/303 (26%), Positives = 155/303 (51%), Gaps = 21/303 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I GF+ P+ IQ AI + +D+IA+A +G+GKT + + ++Q I DH
Sbjct: 42 RGIYGFGFEKPSAIQKRAI-VPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DH------ 93
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEI-KCLNLSSGNVSGNLLKSLLTENPE 146
++ +++ PTRELAQQ+ +V+ L + + I C+ G S + L
Sbjct: 94 EDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCI----GGTSVRDDQRKLEAGIH 149
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+++ TP ++ D+++ ++ R+K V+DE D +L+ G+++ + ++ +P + +Q L
Sbjct: 150 VVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMP--QDVQVVL 207
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
+SAT+ ++ + +F R+P + + DE+ + + Q+Y+ V + + C
Sbjct: 208 LSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIR--QFYINVQKDEWKFDCLCDLYNV 265
Query: 267 LIKGKTLIFVNNIDRGYRL--KLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+ + +IF N + L K+ QF + SC L+ ++ R I+ EF ++LI
Sbjct: 266 VNVTQAVIFCNTRRKVDTLTEKMTENQFTV-SC-LHGDMDQAERDTIMREFRSGSSRVLI 323
Query: 325 ATD 327
TD
Sbjct: 324 TTD 326
Score = 56.6 bits (135), Expect = 1e-07
Identities = 21/45 (46%), Positives = 37/45 (81%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V+ V+N+DLP+ ++Y+HRIGR+ R G+ G++I+FV
Sbjct: 328 LARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFV 372
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 103 bits (256), Expect = 1e-21
Identities = 87/302 (28%), Positives = 139/302 (45%), Gaps = 13/302 (4%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTIL----DHKKADQNDE 89
G+ PT +Q +IP L RD+++ A TGSGKT A+L+P+IQ IL D K
Sbjct: 142 GYSKPTPVQKHSIPTLLAN-RDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTN 200
Query: 90 GATL----GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP 145
G ++L PTRELA Q+ + K I+ L G + + L
Sbjct: 201 GRRTYYPCALVLSPTRELAIQIHKEATKFSY--KSNIQTAILYGGRENYRDQVNRLRAGT 258
Query: 146 EILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKI-SERLPLRKSLQT 204
ILIATP +L+D+++ + + ++LV+DE D +L G++ + KI + +P + + T
Sbjct: 259 HILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTT 318
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
+ SAT +IQ L + F + I L V + Q + V E +K I
Sbjct: 319 AMFSATFPKEIQVLAKDFLKDNYIF-LAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILM 377
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+ L+FV L L + I+S ++ +L R+ +E F +L+
Sbjct: 378 NEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILV 437
Query: 325 AT 326
AT
Sbjct: 438 AT 439
Score = 53.1 bits (126), Expect = 1e-06
Identities = 24/43 (55%), Positives = 30/43 (68%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D NV V+N+DLP + YVHRIGRT R G GI+ SF
Sbjct: 443 ARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSF 485
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 103 bits (256), Expect = 1e-21
Identities = 87/302 (28%), Positives = 139/302 (45%), Gaps = 13/302 (4%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTIL----DHKKADQNDE 89
G+ PT +Q +IP L RD+++ A TGSGKT A+L+P+IQ IL D K
Sbjct: 139 GYSKPTPVQKHSIPTLLAN-RDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTN 197
Query: 90 GATL----GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP 145
G ++L PTRELA Q+ + K I+ L G + + L
Sbjct: 198 GRRTYYPCALVLSPTRELAIQIHKEATKFSY--KSNIQTAILYGGRENYRDQVNRLRAGT 255
Query: 146 EILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKI-SERLPLRKSLQT 204
ILIATP +L+D+++ + + ++LV+DE D +L G++ + KI + +P + + T
Sbjct: 256 HILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTT 315
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
+ SAT +IQ L + F + I L V + Q + V E +K I
Sbjct: 316 AMFSATFPKEIQVLAKDFLKDNYIF-LAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILM 374
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+ L+FV L L + I+S ++ +L R+ +E F +L+
Sbjct: 375 NEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILV 434
Query: 325 AT 326
AT
Sbjct: 435 AT 436
Score = 53.1 bits (126), Expect = 1e-06
Identities = 24/43 (55%), Positives = 30/43 (68%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D NV V+N+DLP + YVHRIGRT R G GI+ SF
Sbjct: 440 ARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSF 482
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 102 bits (255), Expect = 1e-21
Identities = 82/311 (26%), Positives = 153/311 (48%), Gaps = 29/311 (9%)
Query: 39 TLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILV 98
T IQS A+P A+ RD+I + TGSGKT++YL+P+++ + + +++ G +G+IL
Sbjct: 280 TPIQSQALP-AIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETG-PMGLILA 337
Query: 99 PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDL 158
PTRELA Q+ E V K I+ + + G+ + L EI++ATP + +D+
Sbjct: 338 PTRELALQIHEEVTK-FTEADTSIRSVCCTGGSEMKKQITD-LKRGTEIVVATPGRFIDI 395
Query: 159 LDAQD---VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDI 215
L D ++ R+ F+V+DE D + G++ +T+I + +R Q L SAT + +
Sbjct: 396 LTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMK--TVRPDKQCVLFSATFPNKL 453
Query: 216 QHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKF-LLCYVIFK---------- 264
+ + SP + +N + + K ++ + E +KF L +I +
Sbjct: 454 RSFAVRVLHSPISITINSKGMVNENVKQ-KFRICHSEDEKFDNLVQLIHERSEFFDEVQS 512
Query: 265 --------LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFN 316
+ + K +IFV++ + + L GI +C +++ P R +E+F
Sbjct: 513 ENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFK 572
Query: 317 KNVYQLLIATD 327
+ +L+ T+
Sbjct: 573 REKNSILLCTE 583
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 102 bits (255), Expect = 1e-21
Identities = 82/303 (27%), Positives = 147/303 (48%), Gaps = 21/303 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ AI L E RD++A+A +G+GKT + I V+Q I K Q
Sbjct: 32 RGIYAYGFERPSAIQQRAIMPILGE-RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQ- 89
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLK---SLLTEN 144
+IL PTRELAQQ+ +VV L + E + G L++ + L
Sbjct: 90 ------ALILAPTRELAQQIQKVVVALGDLMNVECHAC------IGGTLVRDDMAALQAG 137
Query: 145 PEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQT 204
+++ TP ++ D++ + + D ++ V+DE D +L+ G+++ + I + LP + Q
Sbjct: 138 VHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLP--PTAQV 195
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
L+SAT+ D+ + +F R P + + DE+ + K V+ E+ LC +
Sbjct: 196 VLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYET 255
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
+ + + +IF N + L L + ++ ++ R ++ EF ++LI
Sbjct: 256 VTVT--QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILI 313
Query: 325 ATD 327
TD
Sbjct: 314 TTD 316
Score = 56.2 bits (134), Expect = 1e-07
Identities = 22/45 (48%), Positives = 35/45 (76%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V+ V+N+DLP ++Y+HRIGR R G+ G+SI+FV
Sbjct: 318 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFV 362
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 102 bits (255), Expect = 1e-21
Identities = 93/399 (23%), Positives = 174/399 (43%), Gaps = 66/399 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP A+ D++ +A +G GKT ++I +Q + +
Sbjct: 54 RAIGDCGFEHPSEVQHECIPQAILGM-DVVCQAKSGMGKTAVFVITTLQQL-------EP 105
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+G V + TRELA Q+ + E+ + +K G + L + P I
Sbjct: 106 VDGEVSVVCMCHTRELAFQISKEYERFSKYLPG-VKVAVFFGGMAIKKDEERLANDCPHI 164
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVD-LVLTFGYQEDLTKISERLPLRKSLQTFL 206
++ TP +++ L + + +D++K+ V+DE D ++ + D+ +I + P +K Q +
Sbjct: 165 VVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQK--QVMM 222
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SATL +++ + ++F + P + + DDE L Q+YVK+ E +K +
Sbjct: 223 FSATLPKELRTVCKRFMQDPMEVYV-DDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLD-A 280
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
L + +IFV + R L +L + S ++ ++ R + F ++L+AT
Sbjct: 281 LEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVAT 340
Query: 327 DDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVD 386
D +G ++
Sbjct: 341 D--------------------------------------------------LFGRGMDIE 350
Query: 387 FKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
N+ V N+D+P + SY+HR+ R R G G++I+FV
Sbjct: 351 RVNI--VFNYDMPEDSDSYLHRVARAGRFGTKGLAITFV 387
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 102 bits (255), Expect = 1e-21
Identities = 71/222 (31%), Positives = 114/222 (50%), Gaps = 19/222 (8%)
Query: 33 IGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGAT 92
+GF+ PTL+Q+ AIP+ L RD++ A TG+GKT+AYL P+I + H G T
Sbjct: 48 MGFEAPTLVQAQAIPVILSG-RDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHG-T 105
Query: 93 LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATP 152
+++VPTREL QV E +EKL+ + G K+ L + ILIATP
Sbjct: 106 FALVIVPTRELCLQVYETLEKLLHRFHWIVP--GYVMGGEKKAKEKARLRKGISILIATP 163
Query: 153 AKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERL--------------P 197
+L+D L + L++++ DE D +L GY +++ +I + L P
Sbjct: 164 GRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVP 223
Query: 198 LRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKD 239
Q L+SATLND + L + P ++ L++ ++ ++
Sbjct: 224 KGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQN 265
Score = 62.0 bits (149), Expect = 2e-09
Identities = 46/163 (28%), Positives = 75/163 (45%), Gaps = 24/163 (14%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP-----LKEFGKHKP 436
+RG+DF V C++ +D P A YVHR+GRTAR G+ G ++ F+ P LKE KH
Sbjct: 410 ARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKKHGA 469
Query: 437 SM----IKSAKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAI 492
S+ + I G + + + L E P+ ++ RA+ +
Sbjct: 470 SLTEYPLMKVLDKFPIPGNMPRIKKVLSLESHPWVISLQ-------------RALESLTY 516
Query: 493 REARIKELKQELLASEKLKRHFEENPHDLESLRHDKELHPARV 535
E ++K L + S R + + +L+S+ K+LH V
Sbjct: 517 AEPKMKSLAKNAFVS--WVRGYAAHKGELKSIFVVKKLHLGHV 557
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 102 bits (255), Expect = 1e-21
Identities = 92/399 (23%), Positives = 177/399 (44%), Gaps = 65/399 (16%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP A+ DI+ +A +G GKT +++ +Q + + +
Sbjct: 54 RAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQQL------EPS 106
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
D +++ TRELA Q+ + E+ + +K G ++L + P I
Sbjct: 107 DNNTCHVLVMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGMAIQKDEETLKSGTPHI 165
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTFL 206
++ TP +++ L+ + +N+ LK V+DE D +L + D+ +I P K Q +
Sbjct: 166 VVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGK--QVMM 223
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SATL+ DI+ + ++F + P + + DDE L Q+YV + E +K + + +
Sbjct: 224 FSATLSKDIRPVCKKFMQDPMEVYV-DDEAKLTLHGLQQHYVNLKENEKNKKLFELLDV- 281
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
L + +IFV ++ R L +L + + ++ + R + ++F ++L+AT
Sbjct: 282 LEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVAT 341
Query: 327 DDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVD 386
+ +G ++
Sbjct: 342 N--------------------------------------------------LFGRGMDIE 351
Query: 387 FKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
N+ V N+D+P + +Y+HR+ R R G G++I+FV
Sbjct: 352 RVNI--VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 388
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 102 bits (255), Expect = 1e-21
Identities = 99/327 (30%), Positives = 154/327 (46%), Gaps = 46/327 (14%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+ F HPT +Q +I ALQ K D++ A TGSGKTLA+LIPV++ + +K + +
Sbjct: 85 KALAESKFVHPTQVQRDSIGPALQGK-DVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTD 143
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP-- 145
GA +I+ PTRELA Q+ E ++K+ K + S+G + G K+L E
Sbjct: 144 GVGA---IIISPTRELAYQIFETLKKV-------GKHHDFSAGLIIGG--KNLKFERTRM 191
Query: 146 ---EILIATPAKLVDLLDAQDV-NIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS 201
ILI TP +L+ +D + N ++ LV+DE D L G+Q+ L I E P +
Sbjct: 192 DQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVR- 250
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPAIL----------------KLNDDEVNKDQTKLIQ 245
QT L SAT + +Q L + + P + K + V L Q
Sbjct: 251 -QTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQ 309
Query: 246 YYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQF-----GIKSCILN 300
YV + DK + + K +K K ++FV + + K + E F G L
Sbjct: 310 SYVVLNLEDKITMLWSFIK-NHLKQKIIVFVASCKQA---KYLYEIFCKLRPGSPLLALY 365
Query: 301 SELPANSRQHIVEEFNKNVYQLLIATD 327
L + R I E+F + + ++ +TD
Sbjct: 366 GTLHQDRRIAIYEDFLRKSHVVMFSTD 392
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 102 bits (254), Expect = 2e-21
Identities = 92/400 (23%), Positives = 181/400 (45%), Gaps = 68/400 (17%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP A+ D++ +A +G GKT +++ +Q + +
Sbjct: 58 RAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQL-------EP 109
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTEN-PE 146
G +++ TRELA Q+ + E+ + +K + + G +S + +L +N P
Sbjct: 110 VTGQVSVLVMCHTRELAFQISKEYERFSKYMPN-VK-VAVFFGGLSIKKDEEVLKKNCPH 167
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTF 205
I++ TP +++ L + +N+ +K ++DE D +L + D+ +I P K Q
Sbjct: 168 IVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK--QVM 225
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
+ SATL+ +I+ + ++F + P + + DDE L QYYVK+ + +K + + +
Sbjct: 226 MFSATLSKEIRPVCRKFMQDPMEIFV-DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV 284
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
L + +IFV ++ R L +L + + ++ +P R ++F ++L+A
Sbjct: 285 -LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 343
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
T+ +G +
Sbjct: 344 TN--------------------------------------------------LFGRGMDI 353
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+ N+A N+D+P + +Y+HR+ R R G G++I+FV
Sbjct: 354 ERVNIA--FNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 391
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 102 bits (254), Expect = 2e-21
Identities = 104/404 (25%), Positives = 174/404 (42%), Gaps = 68/404 (16%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTI----LDHKKAD 85
IR GF+ P+ IQS PL L + D I + TGSGKTLA+L+P + I ++K D
Sbjct: 99 IRKNGFEKPSPIQSQMWPLLLSGQ-DCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKND 157
Query: 86 QNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP 145
+ + + ++L PTRELAQQ+ V+K + K + L G +++
Sbjct: 158 EEQKPSPFVLVLSPTRELAQQIEGEVKK---YSYNGYKSVCLYGGGSRPEQVEAC-RGGV 213
Query: 146 EILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTF 205
EI+IATP +L DL + +++ + ++V+DE D +L G++ + +I +R
Sbjct: 214 EIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRI--LFEIRPDRLVA 271
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFL-LCYVIFK 264
L SAT + ++ L ++ + A++ +N + Q++ V +FL +C ++
Sbjct: 272 LTSATWPEGVRKLTDKYTKE-AVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNF 330
Query: 265 LGLIKG---KTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
L G K +IFV + L GI S L+ + R+ + Q
Sbjct: 331 LTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQ 390
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
+L+ATD ++V D + V D
Sbjct: 391 ILVATDLASRG----------------IDVPDITHVLNYD-------------------- 414
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
P + YVHR+GRT RAG+ G ++SF+
Sbjct: 415 ----------------FPMDIEEYVHRVGRTGRAGRKGEAMSFL 442
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 102 bits (253), Expect = 2e-21
Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 26/317 (8%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILD--HKKADQN 87
++ + PT IQ ++ + D++A A TGSGKTLA+LIP + +++ K D
Sbjct: 751 LKRMKMNRPTPIQRASF-FPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVT 809
Query: 88 DEGATLGVILV-PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNL----LKSLLT 142
DE + +++V PTREL Q +L +KC L+ G S N L+S
Sbjct: 810 DEKPSPRLLIVAPTRELVNQTFTTARQLTY--ETGLKC-GLAFGGYSRNANVQHLRSFSQ 866
Query: 143 ENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVD-LVLTFGYQEDLTKISERLPLRKS 201
N IL+AT +L D ++A +V++ ++K++V+DE D +V + + E+++KI P ++
Sbjct: 867 LN--ILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGS-PGERT 923
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYV 261
QT L SA+ ++D+Q L D+ K+ Q + V +K Y
Sbjct: 924 QQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAIYK 983
Query: 262 IFKLG-----------LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQH 310
+ + + K KTLIFVN++ L ++ G+ + ++S R
Sbjct: 984 LLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDR 1043
Query: 311 IVEEFNKNVYQLLIATD 327
+++F + YQ ++A++
Sbjct: 1044 TLDDFRRGKYQCMVASN 1060
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 101 bits (252), Expect = 3e-21
Identities = 71/198 (35%), Positives = 104/198 (51%), Gaps = 9/198 (4%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
IR + PT +Q AIP+ L E RD++A A TGSGKT A+ P+I I+ + ++
Sbjct: 166 IRRCKYVRPTPVQRHAIPILLAE-RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRG 224
Query: 90 GATL---GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ VIL PTRELA Q+ + +K +K + G L+ L +
Sbjct: 225 SRAVYPFAVILSPTRELACQIHDEAKKFSY--QTGVKVVVAYGGTPIHQQLREL-ERGCD 281
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISER--LPLRKSLQT 204
IL+ATP +L DLL+ V++ ++FL +DE D +L G++ + KI E+ +P R QT
Sbjct: 282 ILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 341
Query: 205 FLMSATLNDDIQHLKQQF 222
L SAT IQ L F
Sbjct: 342 MLFSATFPSQIQRLAADF 359
Score = 58.5 bits (140), Expect = 3e-08
Identities = 27/43 (62%), Positives = 33/43 (75%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D +VA V+NFDLP YVHRIGRT RAGKSGI+ +F
Sbjct: 460 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAF 502
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 101 bits (251), Expect = 4e-21
Identities = 84/313 (26%), Positives = 149/313 (46%), Gaps = 18/313 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+ F+ T +Q++ IPL K D+ A+TGSGKTLA+++P+++ IL +
Sbjct: 29 EALNQSDFEFCTPVQAATIPLLCSYK-DVAVDAATGSGKTLAFVVPLVE-ILRRSTSFPP 86
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+GVI+ PTREL+ Q+ V + + + L + V + +K + E +
Sbjct: 87 KPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKAD-MKIIEEEGCNV 145
Query: 148 LIATPAKLVDLLDAQDV-NIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
LI TP +L D+++ ++ + L+ L++DE D +L G+Q + I RLP K +T L
Sbjct: 146 LIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLP--KQRRTGL 203
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SAT + ++ L + R+P +++ ++ +L G +++ C K
Sbjct: 204 FSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSS 263
Query: 267 -----LIKG---KTLIFVNNIDRGYRLKLVLEQF-GIKSCIL---NSELPANSRQHIVEE 314
LIK K ++F LVL + +KS L + ++ N+R +
Sbjct: 264 QLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALAS 323
Query: 315 FNKNVYQLLIATD 327
F K L+ TD
Sbjct: 324 FTKASSGALLCTD 336
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 100 bits (250), Expect = 5e-21
Identities = 107/427 (25%), Positives = 177/427 (41%), Gaps = 77/427 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
++I +G PT IQS A P+ LQ D+I A TG+GKTL+YL+P LD + +
Sbjct: 235 KSIIRVGIVKPTPIQSQAWPIILQGI-DLIVVAQTGTGKTLSYLMPGF-IHLDSQPISRE 292
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
++L PTRELA L V + + + +K + + G ++ + ++ +I
Sbjct: 293 QRNGPGMLVLTPTRELA---LHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI-SKGVDI 348
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+IATP +L DL VN+ + +LVIDE D +L ++ + KI L +R QT +
Sbjct: 349 IIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKI--LLDVRPDRQTVMT 406
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SAT D ++ L + + P I+ + + + T + Q + E +K L +
Sbjct: 407 SATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNT-VKQNIIVTTEKEKRALTQEFVENMS 465
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
K ++FV+ L GI + L+ + ++ VE+F ++LI TD
Sbjct: 466 PNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTD 525
Query: 328 DTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDF 387
+D + VT N Y R +D
Sbjct: 526 IVSRG-------------------LDLNDVTHVYN----------------YDFPRNIDV 550
Query: 388 KNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKKDEK 447
YVHR+G R GK+G S++ + ++D K
Sbjct: 551 -----------------YVHRVGYIGRTGKTGTSVTLI----------------TQRDSK 577
Query: 448 ILGRIIK 454
+ G +IK
Sbjct: 578 MAGELIK 584
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 100 bits (250), Expect = 5e-21
Identities = 92/400 (23%), Positives = 181/400 (45%), Gaps = 68/400 (17%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP A+ D++ +A +G GKT +++ +Q I +
Sbjct: 57 RAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQI-------EP 108
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTEN-PE 146
G +++ TRELA Q+ + E+ + +K +++ G +S + +L +N P
Sbjct: 109 VNGQVTVLVMCHTRELAFQISKEYERFSKYMPS-VK-VSVFFGGLSIKKDEEVLKKNCPH 166
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTF 205
+++ TP +++ L+ + ++ +K V+DE D +L + D+ +I P K Q
Sbjct: 167 VVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEK--QCM 224
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
+ SATL+ DI+ + ++F + P + + DDE L QYYVK+ + +K + + +
Sbjct: 225 MFSATLSKDIRPVCRKFMQDPMEVFV-DDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDV 283
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
L + +IFV ++ R L +L + + ++ + R ++F ++L+A
Sbjct: 284 -LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVA 342
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
T+ +G +
Sbjct: 343 TN--------------------------------------------------LFGRGMDI 352
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+ N+ V N+D+P + +Y+HR+ R R G G++I+FV
Sbjct: 353 ERVNI--VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 390
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 100 bits (250), Expect = 5e-21
Identities = 91/310 (29%), Positives = 152/310 (48%), Gaps = 28/310 (9%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ ++ ++ T IQ I LALQ K D++ A TGSGKTLA+L+PV++ + ++ +
Sbjct: 82 KGLQEAQYRLVTEIQKQTIGLALQGK-DVLGAAKTGSGKTLAFLVPVLEAL--YRLQWTS 138
Query: 88 DEGATLGVILV-PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTE--- 143
+G LGV+++ PTRELA Q EV+ K+ K + S+G + G K L E
Sbjct: 139 TDG--LGVLIISPTRELAYQTFEVLRKV-------GKNHDFSAGLIIGG--KDLKHEAER 187
Query: 144 --NPEILIATPAKLVDLLD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRK 200
N IL+ TP +L+ +D + L+ LV+DE D +L G+ + + + E LP K
Sbjct: 188 INNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP--K 245
Query: 201 SLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCY 260
QT L SAT ++ L + ++P + +++ L Q Y+ V E + +
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYI-VCELQQKISVL 304
Query: 261 VIFKLGLIKGKTLIFVNN---IDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNK 317
F +K K+++F ++ + YR+ L G+ L+ R + EF +
Sbjct: 305 YSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRP-GVSILALHGRQQQMRRMEVYNEFVR 363
Query: 318 NVYQLLIATD 327
+L ATD
Sbjct: 364 KRAAVLFATD 373
Score = 50.1 bits (118), Expect = 1e-05
Identities = 42/153 (27%), Positives = 69/153 (44%), Gaps = 26/153 (16%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV---------------V 426
+RG+DF V VL FD P A +Y+HR GRTAR + G ++ + V
Sbjct: 376 ARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQKKV 435
Query: 427 PLKEFGKHKPSMIKSAKKDEKILG--RIIKQQAKLGFELQPYN---------FDIKQVEG 475
P+KE + +I KK E IL + +K++A+ F + FD+ ++
Sbjct: 436 PVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSKLPI 495
Query: 476 FRYRMEDGFRAVTQVAIREARIKELKQELLASE 508
Y + G +V + K+ +EL+ S+
Sbjct: 496 PEYALSLGLAVAPRVRFLQKMQKQPTKELVRSQ 528
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 100 bits (249), Expect = 6e-21
Identities = 97/398 (24%), Positives = 177/398 (44%), Gaps = 69/398 (17%)
Query: 33 IGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGA 91
+GF P+ IQ A+P+ L +++IA++ +G+GKT A+++ ++ + + Q
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQC---- 56
Query: 92 TLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIAT 151
+ L PT ELA Q VVE++ FC +++ + + GN + +I+I T
Sbjct: 57 ---LCLAPTYELALQTGRVVEQMGKFCV-DVQVMYA----IRGNRIPRGTDITKQIIIGT 108
Query: 152 PAKLVD-LLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTFLMSA 209
P ++D + +++ +++ V+DE D+++ T G+ + +I LP Q L SA
Sbjct: 109 PGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP--SECQMLLFSA 166
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKV-GEFDKF-LLCYVIFKLGL 267
T D + H ++ P ++KL +E+ + + QYYV DK+ LC + + +
Sbjct: 167 TFEDSVWHFAERIIPDPNVIKLRKEELTLNNIR--QYYVLCEHRKDKYQALCNIYGSITI 224
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
G+ +IF L + + Q G + +L+ EL R I++ F ++LI T+
Sbjct: 225 --GQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 282
Query: 328 DTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDF 387
++V + V D KQ + E D E
Sbjct: 283 VCARG----------------IDVKQVTIVVNFDLPVKQGE-----EPDYE--------- 312
Query: 388 KNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+Y+HRIGRT R GK G++ + +
Sbjct: 313 ----------------TYLHRIGRTGRFGKKGLAFNMI 334
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 100 bits (249), Expect = 6e-21
Identities = 83/258 (32%), Positives = 134/258 (51%), Gaps = 22/258 (8%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A++ +GF T IQ+ +I L E +D++A A TGSGKTLA+L+P I+ + HK +
Sbjct: 81 KAVQGLGFTTMTEIQAKSID-PLLEGKDVLASAKTGSGKTLAFLLPAIELL--HKLNWKQ 137
Query: 88 DEGATLGVILV-PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSG----NLLKSLLT 142
G GVI+V PTREL+ Q V+ +L ++ NL+ G V G + K L
Sbjct: 138 HNGT--GVIIVSPTRELSMQTYGVLSEL-------LEGSNLTYGLVMGGSNRSAEKDKLA 188
Query: 143 ENPEILIATPAKLVDLLDAQDVNIDR-LKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS 201
+ IL+ATP +L+D L D + R +K L+IDE D +L G++ ++ ++ LP K
Sbjct: 189 KGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLP--KQ 246
Query: 202 LQTFLMSATLNDDIQHL-KQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCY 260
Q+ L SAT + + L K +P + +++ L Q Y+ + LL +
Sbjct: 247 RQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLF 306
Query: 261 VIFKLGLIKGKTLIFVNN 278
K K K ++F ++
Sbjct: 307 TFLKKNKTK-KVMVFFSS 323
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 100 bits (249), Expect = 6e-21
Identities = 75/301 (24%), Positives = 145/301 (47%), Gaps = 17/301 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I GF+ P+ IQ AI + RD+IA+A +G+GKT + I ++Q I + Q
Sbjct: 29 RGIYGYGFEKPSAIQQRAI-IPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQ- 86
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCS-QEIKCLNLSSGNVSGNLLKSLLTENPE 146
+IL PTRELA Q+ VV L + C+ ++ +L+S
Sbjct: 87 ------ALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILES----GCH 136
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+++ TP ++ D+++ + + +K V+DE D +L+ G+++ + + + LP +Q L
Sbjct: 137 VVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLP--PDVQVIL 194
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
+SAT+ D+ + + F R P + + +E+ + K VK + LC + L
Sbjct: 195 LSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLS 254
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
+ +++IF N + +L + ++ ++ R+ I+++F ++LI T
Sbjct: 255 IT--QSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITT 312
Query: 327 D 327
D
Sbjct: 313 D 313
Score = 55.1 bits (131), Expect = 3e-07
Identities = 20/45 (44%), Positives = 36/45 (79%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V+ V+N+DLP+ ++Y+HRIGR R G+ G++I+F+
Sbjct: 315 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFI 359
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 100 bits (248), Expect = 8e-21
Identities = 83/303 (27%), Positives = 156/303 (51%), Gaps = 14/303 (4%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTIL-DHKKADQND 88
I G+ T +Q +IP+ L RD++A A TGSGKT A+L+P++ ++ D A +
Sbjct: 303 IAKAGYTKLTPVQKYSIPIILAG-RDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFK 361
Query: 89 EGATLGVILV-PTRELAQQV-LEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
E I+V PTREL Q+ LE + C ++ + + G G+ ++ ++ +
Sbjct: 362 ELQEPECIIVAPTRELVNQIYLEARKFSFGTC---VRAVVIYGGTQLGHSIRQIV-QGCN 417
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKI--SERLPLRKSLQT 204
IL ATP +L+D++ + + + ++K+LV+DE D +L G+ ++ K+ +P ++ QT
Sbjct: 418 ILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 477
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDK-FLLCYVIF 263
+ SAT ++IQ L +F +S L + +V + Q ++VG+F K L ++
Sbjct: 478 LMFSATFPEEIQRLAAEFLKS-NYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILR 536
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
+G +T++FV + + L Q I + ++ + R+ + +F +L
Sbjct: 537 NIG--DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVL 594
Query: 324 IAT 326
+AT
Sbjct: 595 VAT 597
Score = 58.2 bits (139), Expect = 4e-08
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D +NV V+NFDLP+T YVHRIGRT R G +G +ISF
Sbjct: 601 ARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISF 643
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 100 bits (248), Expect = 8e-21
Identities = 91/309 (29%), Positives = 141/309 (45%), Gaps = 17/309 (5%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTIL--DHKKADQN 87
I+ + PT +Q +AIP+ L RD++A A TGSGKT A+ P+I I+ H + +
Sbjct: 161 IQRCKYVKPTPVQRNAIPI-LAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRG 219
Query: 88 DEGA-TLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
G L VIL PTRELA Q+ + K F Q + ++ G N L +
Sbjct: 220 VRGVYPLAVILSPTRELACQIHDEARK---FSYQTGVKVVVAYGGTPVNQQIRELERGVD 276
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISER--LPLRKSLQT 204
IL+ATP +L DLL+ V++ ++FL +DE D +L G++ + KI ++ +P QT
Sbjct: 277 ILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQT 336
Query: 205 FLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK 264
L SAT +IQ L F + L + V ++Q V + DK +
Sbjct: 337 MLFSATFPREIQRLASDFLSNYIFLAVG--RVGSSTDLIVQRVEFVHDSDKRSHLMDLLH 394
Query: 265 LGLIKGK------TLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKN 318
G TL+FV L+ L G + ++ + R+ + F
Sbjct: 395 AQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTG 454
Query: 319 VYQLLIATD 327
+L+ATD
Sbjct: 455 RTPILVATD 463
Score = 55.8 bits (133), Expect = 2e-07
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D +VA V+NFDLP YVHRIGRT RAG SG++ +F
Sbjct: 466 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAF 508
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 99.4 bits (246), Expect = 1e-20
Identities = 97/398 (24%), Positives = 176/398 (43%), Gaps = 69/398 (17%)
Query: 33 IGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGA 91
+GF P+ IQ A+P+ L +++IA++ +G+GKT A+++ ++ + + Q
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQC---- 56
Query: 92 TLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIAT 151
+ L PT ELA Q VVE++ FC +++ + + GN + +I+I T
Sbjct: 57 ---LCLAPTYELALQTGRVVEQMGKFCV-DVQVMYA----IRGNRIPRGTDITKQIIIGT 108
Query: 152 PAKLVD-LLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTFLMSA 209
P ++D + +++ +++ V+DE D+++ T G+ + +I LP Q L SA
Sbjct: 109 PGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP--SECQMLLFSA 166
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKV-GEFDKF-LLCYVIFKLGL 267
T D + H ++ P ++KL +E+ + + QYYV DK+ LC + + +
Sbjct: 167 TFEDSVWHFAERIIPDPNVIKLRKEELTLNNIR--QYYVLCEHRKDKYQALCNIYGSITI 224
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
G+ +IF L + + Q G + +L+ EL R I + F ++LI T+
Sbjct: 225 --GQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTN 282
Query: 328 DTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDF 387
++V + V D KQ + E D E
Sbjct: 283 VCARG----------------IDVKQVTIVVNFDLPVKQGE-----EPDYE--------- 312
Query: 388 KNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+Y+HRIGRT R GK G++ + +
Sbjct: 313 ----------------TYLHRIGRTGRFGKKGLAFNMI 334
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 99.4 bits (246), Expect = 1e-20
Identities = 100/405 (24%), Positives = 174/405 (42%), Gaps = 76/405 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ +R GF +Q IP+AL E DII + TG+GKTLA+L+P +Q ++ +
Sbjct: 17 KGLRENGFVSMKEVQQKVIPMAL-EGHDIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGD 75
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLL---KSLLTEN 144
G +++ PTRELA Q+ +V+ ++ K LS+G + G L + L
Sbjct: 76 GLGC---LVITPTRELALQIFDVLSRI-------AKYTVLSTGLIMGGLEAEDELLKVNQ 125
Query: 145 PEILIATPAKLVDLLDAQD-VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQ 203
IL+ TP +L+ L ++ ++ L++DE D ++ G++E L I E +P +K Q
Sbjct: 126 MNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIPQKK--Q 183
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIF 263
T L SAT + + P I+ + +E Q + Y ++ G+ +L ++
Sbjct: 184 TLLFSATPKASTARILK--LEDPRIISIYKEEGFPSQLRQYFYMMRTGDKINYLHTFIGS 241
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCI--LNSELPANSRQHIVEEFNKNVYQ 321
+ K ++F + L+ E+ +++ I L+ + R + + F K
Sbjct: 242 NPEV---KGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEKNG 298
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
+L TD GL PK++V
Sbjct: 299 ILFCTD---------------LGSRGL------------------DFPKVDV-------- 317
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVV 426
V+ +D P ++YVHR+GRTAR + G S ++V
Sbjct: 318 -----------VIQYDCPCNVETYVHRVGRTARNSERGESYVYLV 351
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 99.0 bits (245), Expect = 2e-20
Identities = 80/300 (26%), Positives = 148/300 (48%), Gaps = 15/300 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ AI ++ RD+IA++ +G+GKT + I V+Q LD + +
Sbjct: 51 RGIYAYGFEKPSAIQQRAIKQIIKG-RDVIAQSQSGTGKTATFSISVLQC-LDIQVRE-- 106
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
T +IL PTRELA Q+ + + L + + ++C G G ++ L +
Sbjct: 107 ----TQALILAPTRELAVQIQKGLLALGDYMN--VQCHACIGGTNVGEDIRKL-DYGQHV 159
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+ TP ++ D++ + + +K LV+DE D +L G++E + + LP + Q L+
Sbjct: 160 VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP--PATQVVLI 217
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SATL +I + +F P + + DE+ + K V+ E+ LC + L +
Sbjct: 218 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 277
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+ +IF N + L + + ++ ++P R+ I++EF ++LI+TD
Sbjct: 278 T--QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 335
Score = 52.8 bits (125), Expect = 1e-06
Identities = 20/44 (45%), Positives = 33/44 (74%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D V+ ++N+DLP + Y+HRIGR+ R G+ G++I+FV
Sbjct: 338 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 99.0 bits (245), Expect = 2e-20
Identities = 132/539 (24%), Positives = 225/539 (41%), Gaps = 148/539 (27%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKK---- 83
+A+ GFK PT IQ+ +P A+ K+DI+ A TGSGKTLA+ IP++ I++ K+
Sbjct: 228 RALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIR 287
Query: 84 -----------------ADQND-----------EGAT-----------------LGVILV 98
AD+++ GA+ G++L
Sbjct: 288 SGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLT 347
Query: 99 PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDL 158
PTRELA QV + + + + G ++ + +L + P+I++ATP +L +L
Sbjct: 348 PTRELAVQVKNHLVAAAKYTGIRVAAI---FGGLAVAKQERVLRQCPDIVVATPGRLWEL 404
Query: 159 LDAQDVNIDRLK---FLVIDEVDLVLTFGYQEDLTKISERL----PLRKSLQTFLMSATL 211
+ ++ +++ FLVIDE D ++ G+ E+L + + L + Q F+ SATL
Sbjct: 405 YAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSATL 464
Query: 212 ---NDDIQHL-KQQFCRSPAILKLNDD--------EVNKDQTKLIQYYVKVGEFDKF--- 256
+D H+ K+ + P +K D E+ Q K++
Sbjct: 465 TLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQTAQTLTES 524
Query: 257 -LLC-------YVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSC---ILNSELPA 305
LLC ++ + + G+T++F N+ID RL + FG+ C L++ +
Sbjct: 525 RLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATL---FGLLDCNPLPLHANMIQ 581
Query: 306 NSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKK 365
R +E F + LLIATD A+
Sbjct: 582 KQRLKNLERFRDSPTGLLIATDVA---------------------------------ARG 608
Query: 366 QKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
P NVE Y V R T+++YVHR GRTARA K GI++ F+
Sbjct: 609 LDIP--NVEHVIHYQVPR-----------------TSENYVHRSGRTARANKHGITVMFM 649
Query: 426 VP--LKEFGKHKPSMIKSAKKD-----EKILGRIIKQQAKLGFELQPYNFDIKQVEGFR 477
P +K + K ++ ++ E+ +G ++++ L +L +K+V+ R
Sbjct: 650 EPGEVKSYVKLYKTLERTEDLPLFPILERFMG-AVRERVNLARDLDKEELKLKRVQSER 707
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 98.2 bits (243), Expect = 3e-20
Identities = 102/429 (23%), Positives = 181/429 (41%), Gaps = 85/429 (19%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP ++ D++ +A +G GKT +++ +Q +
Sbjct: 75 RAIIDCGFEHPSEVQQHTIPQSIHGT-DVLCQAKSGLGKTAVFVLSTLQQL-------DP 126
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSG---NVSGNLLKSLLTEN 144
G V++ RELA Q+ + + ++K G + LLK+ T
Sbjct: 127 VPGEVAVVVICNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTPISKDAELLKNKDTA- 184
Query: 145 PEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQ 203
P I++ATP +L L+ + +++ +K VIDE D VL + D+ +I P K Q
Sbjct: 185 PHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDK--Q 242
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIF 263
+ SATL+ +I+ + ++F ++P + + DDE L QYY+K+ E +K +
Sbjct: 243 VMMFSATLSQEIRPICRRFLQNPLEIFV-DDEAKLTLHGLQQYYIKLEEREKNRKLAQLL 301
Query: 264 KLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
L + +IFV + R L +L + ++ + R + F ++
Sbjct: 302 D-DLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRIC 360
Query: 324 IATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSR 383
++TD +G
Sbjct: 361 VSTD--------------------------------------------------VFGRGI 370
Query: 384 GVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAK 443
++ N+A +N+DL A Y+HR+GR R G G++ISFV S+K
Sbjct: 371 DIERINLA--INYDLTNEADQYLHRVGRAGRFGTKGLAISFV---------------SSK 413
Query: 444 KDEKILGRI 452
+DE++L +I
Sbjct: 414 EDEEVLAKI 422
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 98.2 bits (243), Expect = 3e-20
Identities = 81/276 (29%), Positives = 130/276 (46%), Gaps = 21/276 (7%)
Query: 60 ASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCS 119
A TG+GKTLA+ IP++Q + D +IL PTRELA Q+ E L +
Sbjct: 190 ARTGTGKTLAFAIPILQKL-------SVDPYGIYALILTPTRELAFQIAEQFTALGKPIT 242
Query: 120 QEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNI----DRLKFLVID 175
+KC + G + + L +E P +++ATP +L DL+++ I +++F V+D
Sbjct: 243 --LKCSVIVGGRSLIHQAREL-SERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLD 299
Query: 176 EVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAIL--KLND 233
E D +L Y + L I E + ++ QT L+SAT+ ++I L + R P K D
Sbjct: 300 EADRMLEGQYNDQLKPIFESISEKR--QTLLLSATITNNINMLHRVSTRKPYFFEDKGKD 357
Query: 234 DEVNKDQTKLIQYYVKVGEFDKFLLCYVI--FKLGLIKGKTLIFVNNIDRGYRLKLVLEQ 291
DE D+ + V D +L+ YV+ + K +IF L + E
Sbjct: 358 DESTVDRLEQKYVVCPVAVKDAYLV-YVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEG 416
Query: 292 FGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
G + L+S++P R + F Q++I TD
Sbjct: 417 LGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTD 452
Score = 53.5 bits (127), Expect = 9e-07
Identities = 32/96 (33%), Positives = 54/96 (55%), Gaps = 11/96 (11%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPL---------KEFG 432
SRG+D +V V+N ++P K+Y+HR+GR+ARAG+ G ++SFV + G
Sbjct: 455 SRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIG 514
Query: 433 KHKPSMIKSAKKDEKILGRII--KQQAKLGFELQPY 466
K + S K K + +++ K++A+L E Q +
Sbjct: 515 KKLDELKVSPKHVTKYVTQVLVAKKEAELKLENQKF 550
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 97.4 bits (241), Expect = 5e-20
Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 68/371 (18%)
Query: 55 DIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEKL 114
D++ +A +G+GKTL + + ++ + Q VI+ PTRE++ Q+ E V K+
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQK-------VIVTPTREISVQIKETVRKV 103
Query: 115 IVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVI 174
++ + S+ ++ L L P+I+I TP ++ L+ +N+ + F V+
Sbjct: 104 APTGARTSVYVGGSAHKLN---LIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVL 160
Query: 175 DEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDD 234
DE D ++ +++D+ I LP + + F SAT ++ +L F R A+++ N D
Sbjct: 161 DEADKLMDEVFRDDINIIINSLPQIRQVAVF--SATYPRNLDNLLSTFLRDAALVRFNAD 218
Query: 235 EVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGI 294
+V K QY V L +V+ + + + L+F + I + + L+ G+
Sbjct: 219 DVQLFGIK--QYVVAKCSPMLEKLTHVLKSIRYV--QALVFCDQISKCEPIATHLKSSGL 274
Query: 295 KSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDD 354
++S + RQ V++ ++L+++D T
Sbjct: 275 DVTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLT------------------------- 309
Query: 355 STVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTAR 414
+RG+D NV V+N D ++Y HRIGR AR
Sbjct: 310 ---------------------------ARGIDADNVNLVVNIDAAANEETYFHRIGRAAR 342
Query: 415 AGKSGISISFV 425
G G +++ +
Sbjct: 343 FGAHGAAVTLL 353
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 96.7 bits (239), Expect = 9e-20
Identities = 85/310 (27%), Positives = 149/310 (47%), Gaps = 26/310 (8%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILD--HKKADQN 87
++ + PT IQ ++ + D++A A TGSGKTLA+LIP + +++ K D
Sbjct: 714 LKRMKMNRPTPIQRASF-FPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVT 772
Query: 88 DEGATLGVILV-PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNL----LKSLLT 142
DE + +++V PTREL Q +L +KC L+ G S N L+S
Sbjct: 773 DEKPSPRLLIVAPTRELVNQTFTTARQLTY--ETGLKC-GLAFGGYSRNANVQHLRSFSQ 829
Query: 143 ENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVD-LVLTFGYQEDLTKISERLPLRKS 201
N IL+AT +L D ++A +V++ ++K++V+DE D +V + + E+++KI P ++
Sbjct: 830 LN--ILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSKIIGS-PGERT 886
Query: 202 LQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYV 261
QT L SA+ ++D+Q L D+ K+ Q + V +K Y
Sbjct: 887 QQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAIYK 946
Query: 262 IFKLG-----------LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQH 310
+ + + K KTLIFVN++ L ++ G+ + ++S R
Sbjct: 947 LLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDR 1006
Query: 311 IVEEFNKNVY 320
+++F + Y
Sbjct: 1007 TLDDFRRGKY 1016
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 96.7 bits (239), Expect = 9e-20
Identities = 78/301 (25%), Positives = 141/301 (45%), Gaps = 17/301 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ + GF+ P+ IQ A+ LQ RD+IA+A +G+GKT + V Q + + Q
Sbjct: 48 RGVYEYGFEKPSAIQQRAVMPILQG-RDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ- 105
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCS-QEIKCLNLSSGNVSGNLLKSLLTENPE 146
+IL PTRELA Q + ++ + + + Q C+ GN G ++ L
Sbjct: 106 ------ALILSPTRELATQTEKTIQAIGLHANIQAHACIG---GNSVGEDIRKL-EHGVH 155
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
++ TP ++ D++ + + +K L++DE D +L+ G+++ + + LP LQ L
Sbjct: 156 VVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLP--PDLQVCL 213
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
+SATL +I + +F P + + DE+ + K V+ E+ LC + L
Sbjct: 214 VSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT 273
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
+ + +IF N + L + ++ ++P R I+ EF ++LI T
Sbjct: 274 IT--QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITT 331
Query: 327 D 327
D
Sbjct: 332 D 332
Score = 54.7 bits (130), Expect = 4e-07
Identities = 21/44 (47%), Positives = 34/44 (76%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D + V+ V+N+DLP + Y+HRIGR+ R G+ G++I+FV
Sbjct: 335 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 378
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 96.3 bits (238), Expect = 1e-19
Identities = 82/304 (26%), Positives = 145/304 (46%), Gaps = 25/304 (8%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLG 94
+K PT IQ++ P L RD++ A TGSGKT+A+ IP +Q + +++
Sbjct: 185 YKEPTPIQAATWPYLLAG-RDVVGIAETGSGKTVAFGIPALQYL----NGLSDNKSVPRV 239
Query: 95 VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS---LLTENPEILIAT 151
+++ PTRELA Q E + LI + NL + V G KS +N ++I T
Sbjct: 240 LVVSPTRELAIQTYENLNSLI-------QGTNLKAVVVYGGAPKSEQARAAKNASVIIGT 292
Query: 152 PAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLP---LRKSLQTFLMS 208
P +L+DL++ ++ ++ +LV+DE D +L G+++D+ I P S QT S
Sbjct: 293 PGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFS 352
Query: 209 ATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQ--TKLIQYYVKVGEFDKFL--LCYVIFK 264
AT + ++ L F + P + + DE+ Q T++++ ++ L L
Sbjct: 353 ATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLS 412
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVL-EQFGIKSCILNSELPANSRQHIVEEFNKNVYQLL 323
G K LIFV R++ L ++ + ++ ++ +R + +F +L
Sbjct: 413 SGGKDDKILIFVLYKKEAARVEGTLARKYNVVG--IHGDMSQGARLQALNDFKSGKCPVL 470
Query: 324 IATD 327
+ATD
Sbjct: 471 VATD 474
Score = 51.6 bits (122), Expect = 3e-06
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPL-KEFGKHKPSMIK 440
+RG+D V V+N P T + YVHRIGRT RA G +I+F P K ++++
Sbjct: 477 ARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLR 536
Query: 441 SAKKD 445
AK+D
Sbjct: 537 QAKQD 541
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 95.9 bits (237), Expect = 2e-19
Identities = 68/201 (33%), Positives = 101/201 (49%), Gaps = 20/201 (9%)
Query: 36 KHPTLIQSSAIPLALQE--KRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
K PT IQ AIP + K D A TGSGKTL+YL+P+I TIL+ GA
Sbjct: 165 KKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGA-F 223
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
+++ PTRELA Q+ V L+ C + CL + G K+ L + +I TP
Sbjct: 224 ALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLI--GGERKKSEKARLRKGCNFIIGTPG 281
Query: 154 KLVDLLDAQDVNIDR----LKFLVIDEVDLVLTFGYQEDLTKI----------SERLP-L 198
+++D L V ++ L+++V+DE D ++ G+ E +++I SE+ P L
Sbjct: 282 RVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKL 341
Query: 199 RKSLQTFLMSATLNDDIQHLK 219
L L SATL D + L+
Sbjct: 342 PHKLVHMLCSATLTDGVNRLR 362
Score = 50.4 bits (119), Expect = 7e-06
Identities = 22/49 (44%), Positives = 34/49 (68%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKE 430
SRG+D +V V+ D P + ++HR+GRTARAG+ G S+ F++P +E
Sbjct: 524 SRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGESLLFLLPGEE 572
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 95.9 bits (237), Expect = 2e-19
Identities = 78/300 (26%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ +I + + RD+IA+A +G+GKT + I ++Q++ + Q
Sbjct: 39 RGIYAYGFEKPSAIQQRSIT-PIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQV 97
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+ L PTRELA Q+ +V+ L + ++C G G ++ L I
Sbjct: 98 -------LCLSPTRELAVQIQKVI--LALGDMMNVQCHVCIGGTNLGEDIRKL-DYGQHI 147
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
+ TP ++ D++ + + +K LV+DE D +L G++E + + LP + Q L+
Sbjct: 148 VSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP--PATQVVLI 205
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SATL +I + +F P + + DE+ + K V+ E+ LC + L +
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+ +IF N + L + + ++ ++P R I++EF ++LI TD
Sbjct: 266 T--QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTD 323
Score = 54.7 bits (130), Expect = 4e-07
Identities = 21/44 (47%), Positives = 34/44 (76%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+RG+D + V+ V+N+DLP + Y+HRIGR+ R G+ G++I+FV
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 95.1 bits (235), Expect = 3e-19
Identities = 103/405 (25%), Positives = 182/405 (44%), Gaps = 57/405 (14%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ 86
+A+ ++ F+ PT IQ +A+PL L E ++IA+A +G+GKT A+++ ++ I + Q
Sbjct: 222 KALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQ 281
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ L PT ELA+Q+ EVVEK+ F + GN++ + LTE +
Sbjct: 282 C-------ICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAA-MRGRKLTE--Q 331
Query: 147 ILIATPAKLVDLLDA-QDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERL-----PLRK 200
I+I TP D L + ++ +++ LV+DE D+++ Y + T IS +
Sbjct: 332 IVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMI---YHQGFTDISTTIYNMVEDASD 388
Query: 201 SLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCY 260
S+Q+ L SAT ++ + + + ++ ++ L +E K Q+YV+ D
Sbjct: 389 SVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIK--QFYVQCACRDSKYAAI 446
Query: 261 VIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVY 320
V GL ++IF + L + G + +L+ ++ R + F + +
Sbjct: 447 VNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDF 506
Query: 321 QLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYG 380
++LI T+ ++V S V D K + G
Sbjct: 507 KVLITTNVFARG----------------IDVAQVSVVINYDLPIKY----------TDEG 540
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
VD F P ++Y+HRIGRT R GK+GI+I+ +
Sbjct: 541 TPMVVD--------GFTQP-DCETYLHRIGRTGRFGKTGIAINLI 576
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 95.1 bits (235), Expect = 3e-19
Identities = 103/405 (25%), Positives = 182/405 (44%), Gaps = 57/405 (14%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ 86
+A+ ++ F+ PT IQ +A+PL L E ++IA+A +G+GKT A+++ ++ I + Q
Sbjct: 247 KALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQ 306
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ L PT ELA+Q+ EVVEK+ F + GN++ + LTE +
Sbjct: 307 C-------ICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAA-MRGRKLTE--Q 356
Query: 147 ILIATPAKLVDLLDA-QDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERL-----PLRK 200
I+I TP D L + ++ +++ LV+DE D+++ Y + T IS +
Sbjct: 357 IVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMI---YHQGFTDISTTIYNMVEDASD 413
Query: 201 SLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCY 260
S+Q+ L SAT ++ + + + ++ ++ L +E K Q+YV+ D
Sbjct: 414 SVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIK--QFYVQCACRDSKYAAI 471
Query: 261 VIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVY 320
V GL ++IF + L + G + +L+ ++ R + F + +
Sbjct: 472 VNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDF 531
Query: 321 QLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYG 380
++LI T+ ++V S V D K + G
Sbjct: 532 KVLITTNVFARG----------------IDVAQVSVVINYDLPIKY----------TDEG 565
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
VD F P ++Y+HRIGRT R GK+GI+I+ +
Sbjct: 566 TPMVVD--------GFTQP-DCETYLHRIGRTGRFGKTGIAINLI 601
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 95.1 bits (235), Expect = 3e-19
Identities = 103/405 (25%), Positives = 182/405 (44%), Gaps = 57/405 (14%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ 86
+A+ ++ F+ PT IQ +A+PL L E ++IA+A +G+GKT A+++ ++ I + Q
Sbjct: 631 KALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQ 690
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ L PT ELA+Q+ EVVEK+ F + GN++ + LTE +
Sbjct: 691 C-------ICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAA-MRGRKLTE--Q 740
Query: 147 ILIATPAKLVDLLDA-QDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERL-----PLRK 200
I+I TP D L + ++ +++ LV+DE D+++ Y + T IS +
Sbjct: 741 IVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMI---YHQGFTDISTTIYNMVEDASD 797
Query: 201 SLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCY 260
S+Q+ L SAT ++ + + + ++ ++ L +E K Q+YV+ D
Sbjct: 798 SVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIK--QFYVQCACRDSKYAAI 855
Query: 261 VIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVY 320
V GL ++IF + L + G + +L+ ++ R + F + +
Sbjct: 856 VNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDF 915
Query: 321 QLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYG 380
++LI T+ ++V S V D K + G
Sbjct: 916 KVLITTNVFARG----------------IDVAQVSVVINYDLPIKY----------TDEG 949
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
VD F P ++Y+HRIGRT R GK+GI+I+ +
Sbjct: 950 TPMVVD--------GFTQP-DCETYLHRIGRTGRFGKTGIAINLI 985
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 94.7 bits (234), Expect = 3e-19
Identities = 63/217 (29%), Positives = 113/217 (52%), Gaps = 20/217 (9%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTI-----LDHKKADQND 88
GF PT +QS+A+P A+ + D + ++ TGSGKTLAYL+P++ I +ND
Sbjct: 129 GFSVPTDVQSAAVP-AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSEND 187
Query: 89 EGATL-GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+ + +I+ P+REL Q++ VEKL+ + + L G ++L P I
Sbjct: 188 KRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRM-VQQLVGGANRMRQEEALKKNKPAI 246
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRK------- 200
++ TP ++ ++ ++ +FLV+DEVD +L+F ++ED+ +I E + R
Sbjct: 247 VVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGE 306
Query: 201 -----SLQTFLMSATLNDDIQHLKQQFCRSPAILKLN 232
+ QT L+SAT+ + + + P +++ N
Sbjct: 307 VDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQAN 343
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 94.4 bits (233), Expect = 4e-19
Identities = 76/300 (25%), Positives = 142/300 (47%), Gaps = 15/300 (5%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ I + + D+I +A +G+GKT + V+Q LD
Sbjct: 52 RGIYAYGFEKPSAIQQRGI-VPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDFSLIQCQ 109
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
++L PTRELAQQ+ +V+ L + ++ + G S + +L +
Sbjct: 110 ------ALVLAPTRELAQQIEKVMRALGDYLGVKV---HACVGGTSVREDQRILQAGVHV 160
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ TP ++ D+L Q + D +K V+DE D +L+ G+++ + I + LP +Q +
Sbjct: 161 VVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLP--PKIQVGVF 218
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SAT+ + + ++F P + + DE+ + K V+ E+ LC + L +
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 278
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+++IFVN + L + + ++ N+R I+ EF ++LI TD
Sbjct: 279 T--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 336
Score = 58.2 bits (139), Expect = 4e-08
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V+ V+NFDLPT ++Y+HRIGR+ R G+ G++I+FV
Sbjct: 338 LARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 94.4 bits (233), Expect = 4e-19
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 6/223 (2%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+ GF+ T +Q+ IP K D++ A+TGSGKTLA+L+P I+ I+ +
Sbjct: 29 EALDRSGFEVCTPVQAETIPFLCSHK-DVVVDAATGSGKTLAFLLPFIE-IIRRSNSYPP 86
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+GVI+ PTREL+ Q+ +V E + L + V + + +L E +
Sbjct: 87 KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEAD-MNTLEEEGANL 145
Query: 148 LIATPAKLVDLLDAQD-VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
LI TP +L D++ + ++ L+ L++DE D +L G+Q+ + I RLP K +T L
Sbjct: 146 LIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLP--KQRRTGL 203
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVK 249
SAT + L + R+ + + +K + L Y+K
Sbjct: 204 FSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLK 246
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 94.0 bits (232), Expect = 6e-19
Identities = 79/302 (26%), Positives = 144/302 (47%), Gaps = 19/302 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ I + + D+I +A +G+GKT + V+Q + Q
Sbjct: 54 RGIYAYGFEKPSAIQQRGI-IPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQ- 111
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
++L PTRELAQQ+ +V+ L + + + G S + +L +
Sbjct: 112 ------ALVLAPTRELAQQIEKVMRALGDYLGVKAQAC---VGGTSVREDQRVLQSGVHV 162
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ TP ++ DLL Q + D +K V+DE D +L+ G+++ + I + LP +Q +
Sbjct: 163 VVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLP--SKVQVGVF 220
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG--EFDKFLLCYVIFKL 265
SAT+ + + ++F P + + DE+ + K Q+YV V E+ LC + L
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIK--QFYVNVDKEEWKLETLCDLYETL 278
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+ +++IFVN + L + + ++ N+R I+ EF ++LI
Sbjct: 279 AIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336
Query: 326 TD 327
TD
Sbjct: 337 TD 338
Score = 57.0 bits (136), Expect = 8e-08
Identities = 22/45 (48%), Positives = 37/45 (81%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V+ V+NFDLPT ++Y+HRIGR+ R G+ G++I+F+
Sbjct: 340 LARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFM 384
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 94.0 bits (232), Expect = 6e-19
Identities = 82/302 (27%), Positives = 149/302 (49%), Gaps = 19/302 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I + GF+ P+ IQ I + + D+I +A +G+GKT + V+Q LD+
Sbjct: 52 RGIYAYGFEKPSAIQQRGI-VPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYALLQCQ 109
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
++L PTRELAQQ+ +V+ L + Q +K ++ G S + +L +
Sbjct: 110 ------ALVLAPTRELAQQIEKVMRALGDY--QGVK-VHACVGGTSVREDQRILQAGVHV 160
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ TP ++ D+L Q + D +K V+DE D +L+ G+++ + I + LP +Q +
Sbjct: 161 VVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLP--PKIQVGVF 218
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFL--LCYVIFKL 265
SAT+ + + ++F P + + DE+ + K Q+YV V + D L LC + L
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIK--QFYVNVEKEDWKLETLCDLYETL 276
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+ +++IFVN + L + + ++ N+R I+ EF ++LI
Sbjct: 277 AIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334
Query: 326 TD 327
TD
Sbjct: 335 TD 336
Score = 58.2 bits (139), Expect = 4e-08
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V+ V+NFDLPT ++Y+HRIGR+ R G+ G++I+FV
Sbjct: 338 LARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 93.6 bits (231), Expect = 8e-19
Identities = 67/193 (34%), Positives = 103/193 (52%), Gaps = 17/193 (8%)
Query: 31 RSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEG 90
R +G K PT +Q IP A+ E RD + A TGSGKT A+++P++Q + D
Sbjct: 18 RQLGLKKPTPVQLGCIP-AILEGRDCLGCAKTGSGKTAAFVLPILQKL-------SEDPY 69
Query: 91 ATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIA 150
++L PTRELA Q+ E L + C+ + ++ L+ L+ P ++IA
Sbjct: 70 GIFCLVLTPTRELAYQIAERFRVLGKPLGLK-DCIIVGGMDMVAQALE--LSRKPHVVIA 126
Query: 151 TPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFG---YQEDLTKISERLPLRKSLQTFL 206
TP +L D L + +I +++FLV+DE D +L G + DL I +P R+ QT L
Sbjct: 127 TPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR--QTLL 184
Query: 207 MSATLNDDIQHLK 219
SATL D ++ L+
Sbjct: 185 FSATLTDTLRELQ 197
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 93.2 bits (230), Expect = 1e-18
Identities = 96/428 (22%), Positives = 185/428 (42%), Gaps = 85/428 (19%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ +R+ GF+ P+ +Q AIPL + D+I +A +G+GKT + + +++ + Q
Sbjct: 75 EGLRAAGFERPSPVQLKAIPLG-RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQI 133
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+IL PTRE+A Q+ V+ + + + ++C ++ G + K+ L + I
Sbjct: 134 -------LILAPTREIAVQIHSVITAIGIKM-EGLEC-HVFIGGTPLSQDKTRL-KKCHI 183
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFG-YQEDLTKISERLPLRKSLQTFL 206
+ +P ++ L++ +N ++ ++DE D +L G +QE + I LP K Q
Sbjct: 184 AVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK--QMLA 241
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFK-- 264
+SAT + + + ++ R P ++LN + + K QYY V + L + +F+
Sbjct: 242 VSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLK--QYYKVVNSYP---LAHKVFEEK 296
Query: 265 --------LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFN 316
+ + L+F N R L +L G + ++ + N R + +
Sbjct: 297 TQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLK 356
Query: 317 KNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKD 376
++LI+TD T
Sbjct: 357 HFHCRVLISTDLT----------------------------------------------- 369
Query: 377 KEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKP 436
SRG+D + V V+N D+P ++Y+HRIGR R G G+++++ G+ +
Sbjct: 370 -----SRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCR----GEEEN 420
Query: 437 SMIKSAKK 444
M++ A+K
Sbjct: 421 MMMRIAQK 428
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 93.2 bits (230), Expect = 1e-18
Identities = 85/295 (28%), Positives = 140/295 (46%), Gaps = 20/295 (6%)
Query: 39 TLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILV 98
T +QS+AIP AL RDI+ A TGSGKTLA++IP+++ + + + ++ G +I+
Sbjct: 95 TDVQSAAIPHALCG-RDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGC---IIIS 150
Query: 99 PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDL 158
PTRELA Q V+ K+ F L G G ++ IL+ P +L+
Sbjct: 151 PTRELAAQTFGVLNKVGKFHKFS---AGLLIGGREGVDVEKERVHEMNILVCAPGRLLQH 207
Query: 159 LD-AQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQH 217
+D + +L+ L++DE D VL ++ L I +LP K QT L SAT ++
Sbjct: 208 MDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLP--KHRQTLLFSATQTKKVKD 265
Query: 218 LKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVN 277
L + R P + ++ + V T L+Q + V K + + K L + L+F++
Sbjct: 266 LARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHL-NSRILVFLS 324
Query: 278 NIDRGYRLKLVLEQF-----GIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
++K V E F GI L+ ++ R + +F + +L TD
Sbjct: 325 T---KKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIER-QSVLFCTD 375
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 92.8 bits (229), Expect = 1e-18
Identities = 78/301 (25%), Positives = 141/301 (45%), Gaps = 25/301 (8%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ I GF+ P+ IQ SA+ K D+ ++ GSGKT+ LI ++Q I +
Sbjct: 9 RGIYGFGFEKPSAIQKSAVAPCTTGK-DVTIQSQAGSGKTVISLIDILQGI--------D 59
Query: 88 DEGATLGVILV-PTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
E A L VIL+ P R +AQ+ E ++ L + CL + + +
Sbjct: 60 CEDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNATCLGFDTTAENDKI--------SH 111
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+L+ TP D L + R+K V+DE D +L+ G+++ + ++ +P + +Q L
Sbjct: 112 VLMGTPK---DFLSNIPSDTSRIKMFVLDEADEMLSKGFKDQIYEVFRSMP--QDVQVVL 166
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
+SAT+ ++ + +F R P + + DE+ + + Q+Y+ V + + C
Sbjct: 167 LSATMPSEVLDVTNRFMRDPIRILVKKDELTLEGIR--QFYINVQKDEWKFNCLCDLLKT 224
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIAT 326
+ + LIF N R +L L IK + + N R+ +V++FN ++L+ T
Sbjct: 225 SRETQALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTT 284
Query: 327 D 327
D
Sbjct: 285 D 285
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 92.4 bits (228), Expect = 2e-18
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 15/245 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+ GF+ T +Q+ IP K D++ A+TGSGKTLA+L+P I+ I+ +
Sbjct: 30 EALDRSGFEVCTPVQAETIPFLCSHK-DVVVDAATGSGKTLAFLLPFIE-IIRRSNSYPP 87
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+GVI+ PTREL+ Q+ +V + + KC + + + +L E +
Sbjct: 88 KPHQVMGVIISPTRELSAQIHKVARAVRL---DFAKCREVEAD------MNTLEEEGANL 138
Query: 148 LIATPAKLVDLLDAQD-VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
LI TP +L D++ + ++ L+ L++DE D +L G+Q+ + I RLP K +T L
Sbjct: 139 LIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLP--KQRRTGL 196
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SAT + L + R+P LK D+ + L+ F+ C + G
Sbjct: 197 FSATQTQAVADLAKAGLRNP-YLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWG 255
Query: 267 LIKGK 271
L+ K
Sbjct: 256 LVISK 260
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 92.0 bits (227), Expect = 2e-18
Identities = 104/441 (23%), Positives = 182/441 (40%), Gaps = 102/441 (23%)
Query: 39 TLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN--DEGATLGVI 96
+LI+ +P + + + + K TG+ ++ LD K A + LG++
Sbjct: 343 SLIREKPVPKQNENEEENLDKEQTGN----------LKQELDDKSATCKAYPKRPLLGLV 392
Query: 97 LVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLV 156
L PTRELA QV + ++ + F + L G +S + +L PEI++ATP +L
Sbjct: 393 LTPTRELAVQVKQHIDAVARFTGIKTAIL---VGGMSTQKQQRMLNRRPEIVVATPGRLW 449
Query: 157 DLLDAQDV---NIDRLKFLVIDEVDLVLTFGYQEDLTKISERL------PLRKSL----- 202
+L+ + N+ +L+ LV+DE D ++ G+ +L+++ E L P R++L
Sbjct: 450 ELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSAT 509
Query: 203 ---------------QTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYY 247
T M T D+ K P ++ L +E + + +
Sbjct: 510 LTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIH 569
Query: 248 VKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANS 307
+ E D F L Y + + G++L+F N+I RL +L+ I L++ +
Sbjct: 570 CETDEKD-FYLYYFLMQY---PGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQ 625
Query: 308 RQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQK 367
R +E+F + ++D + D A
Sbjct: 626 RLRNLEQFAR----------------------------------LEDCVLLATDVA---- 647
Query: 368 KPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVP 427
+RG+D V V+++ +P T++ YVHR GRTARA G+S+ + P
Sbjct: 648 --------------ARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGP 693
Query: 428 LKEFGKHKPSMIKSAKKDEKI 448
K + K+ KKDE I
Sbjct: 694 EDVINFKK--IYKTLKKDEDI 712
Score = 53.1 bits (126), Expect = 1e-06
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKK 83
+A+ +GF PT IQ+ + A+++K DI+ A TGSGKTLA+ IP+I +L +K
Sbjct: 205 RALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQWQK 260
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 92.0 bits (227), Expect = 2e-18
Identities = 77/298 (25%), Positives = 148/298 (48%), Gaps = 16/298 (5%)
Query: 35 FKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
F+ P+ IQ+ ++P+ + + +IA+A GSGKT +++ ++ + + Q
Sbjct: 112 FEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQ------- 164
Query: 94 GVILVPTRELAQQVLEVVEKLIVFC--SQEIKCLNLSSGNVSGNLLKSLLTENPEILIAT 151
+ + PTRELA Q +EV++K+ F + E+ + + G + + + ++I T
Sbjct: 165 ALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPV---SAHVVIGT 221
Query: 152 PAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLP-LRKSLQTFLMSA 209
P L + + + ++ LK LV DE D +L T G+++D KI + + + + Q L SA
Sbjct: 222 PGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSA 281
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIK 269
T N+ ++ + + P L + +++ D K + + ++ I +LG I
Sbjct: 282 TFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDI- 340
Query: 270 GKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
G+T+IFV ++ L + G ++ L + R IV+EF + + Q+LIATD
Sbjct: 341 GQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATD 398
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 91.7 bits (226), Expect = 3e-18
Identities = 76/294 (25%), Positives = 139/294 (46%), Gaps = 17/294 (5%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF+ P+ IQ +IP+AL RDI+A+A G+GKT A++IP ++ + K Q
Sbjct: 63 GFERPSPIQEESIPIALSG-RDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQT------ 115
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
+ILVPTRELA Q +V + L + ++ + + ++++ L + I++ TP
Sbjct: 116 -LILVPTRELALQTSQVCKTLGKHMNVKV-MVTTGGTTLRDDIIR--LNDTVHIVVGTPG 171
Query: 154 KLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLND 213
+++DL + V+DE D +L+ + + ++ P K+ Q L SAT
Sbjct: 172 RVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFP--KNRQISLYSATFPL 229
Query: 214 DIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTL 273
+++ + P + L D+ + T QYY V E K +F L +++
Sbjct: 230 IVKNFMDKHLNKPYEINLMDELTLRGVT---QYYAFVDESQKVHCLNTLFS-KLQINQSI 285
Query: 274 IFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
IF N+ +R L + + G ++++ + R + F V + L+ +D
Sbjct: 286 IFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSD 339
Score = 53.9 bits (128), Expect = 7e-07
Identities = 22/45 (48%), Positives = 34/45 (74%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
++RG+D + V V+NFD P A++Y+HRIGR+ R G G++ISF+
Sbjct: 341 LTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFI 385
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 91.7 bits (226), Expect = 3e-18
Identities = 108/431 (25%), Positives = 186/431 (43%), Gaps = 130/431 (30%)
Query: 53 KRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVE 112
+RDI + TGSGKTL+Y +P++Q + ++++PTR+LA QV +V +
Sbjct: 24 ERDICVNSPTGSGKTLSYALPIVQLLASRPVR------CLRALVVLPTRDLALQVKDVFD 77
Query: 113 KLIVF-----------------CSQEIKCLNLSSG------NVSGNLLKSLLTENPEILI 149
+ SQ IK L +G ++S NL ++ +IL+
Sbjct: 78 AIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAV-----DILV 132
Query: 150 ATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQE------DLTKISERLPLRKSL 202
ATP +L+D + + + ++ L++LV+DE D +L YQ LT+ S+ L S
Sbjct: 133 ATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDD-SLFPSF 191
Query: 203 QTFLMSATLNDDIQHLKQQFCRS-------PAILKL-NDDEVNKDQTKLIQYYVKVGEF- 253
F+ SA +Q +++Q P ++K+ + +D +KLIQ + F
Sbjct: 192 TPFVPSAF--GSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFM 249
Query: 254 ----------DKF----LLCYV----IFKLGLIKG----KTLIFVNNIDRGYRLKLVLEQ 291
+K L+C ++ + L+K K +IF ++++ RL +L
Sbjct: 250 TTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNF 309
Query: 292 FG---IKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXXXXXXXGL 348
FG IK+ + L + R ++ F K Q+L+A+D
Sbjct: 310 FGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASD--------------------- 348
Query: 349 VEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHR 408
++RG+D K V V+N+D+P AK+++HR
Sbjct: 349 -------------------------------ALTRGMDVKGVTNVINYDMPPFAKTFIHR 377
Query: 409 IGRTARAGKSG 419
GRTARAG++G
Sbjct: 378 AGRTARAGQAG 388
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 91.7 bits (226), Expect = 3e-18
Identities = 74/294 (25%), Positives = 142/294 (48%), Gaps = 23/294 (7%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF+ P+ IQ +IP+AL RDI+A+A G+GKT A+ IPV++ K DQ++
Sbjct: 150 GFERPSPIQEESIPIALTG-RDILARAKNGTGKTAAFCIPVLE------KIDQDNNVIQG 202
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
+L T ++ +++ + ++ ++ +++G S L + +L+ TP
Sbjct: 203 NCVLDHTSQVCKELGKHLKIQVM----------VTTGGTSLKDDIMRLYQPVHLLVGTPG 252
Query: 154 KLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLND 213
+++DL + LV+DE D +L+ +Q + + LP +S Q + SAT
Sbjct: 253 RILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLP--ESRQILMFSATFPV 310
Query: 214 DIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTL 273
++ K +F +P ++ L D+ K T Q+Y V E K +F L +++
Sbjct: 311 TVKDFKDRFLTNPYVINLMDELTLKGIT---QFYAFVEERQKIHCLNTLFS-KLQINQSI 366
Query: 274 IFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
IF N+++R L + + G +++++ + R + +F + L+ TD
Sbjct: 367 IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 420
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 91.7 bits (226), Expect = 3e-18
Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 15/300 (5%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
+ +GFK PT IQ AIP+ L R+ A A TGSGKT A++ P++ + D
Sbjct: 156 LAELGFKEPTPIQRQAIPILLSG-RECFACAPTGSGKTFAFICPMLIKLKVLNCRPSTD- 213
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP--EI 147
VIL P RELA Q +KLI + I+ + L+K+ ++
Sbjct: 214 -GIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKP-------LVKTADFSKLWCDV 265
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
LI+TP +L + A+ +++ ++++LV+DE D + + + + + S+ L
Sbjct: 266 LISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACS-NPSIIRSLF 324
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGL 267
SATL D ++ L + + + + K Q V G + LL
Sbjct: 325 SATLPDSVEELARSIMHDAVRVIIGRKNTASETVK--QKLVFAGSEEGKLLALRQSFAES 382
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+ LIFV + +R L L+ I++ +++S+LP R++ V++F +LIATD
Sbjct: 383 LNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATD 442
Score = 63.5 bits (153), Expect = 8e-10
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 12/76 (15%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV----VP--------L 428
++RG+DFK + CV+N+D P +A +Y+HRIGR+ RAG+SG +I+F VP +
Sbjct: 444 IARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTM 503
Query: 429 KEFGKHKPSMIKSAKK 444
G PS I S KK
Sbjct: 504 MSSGCEVPSWIMSLKK 519
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 91.7 bits (226), Expect = 3e-18
Identities = 101/426 (23%), Positives = 178/426 (41%), Gaps = 78/426 (18%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ + G+K P+ IQ A+ + + + RD+IA+A +G+GKT I V Q + + Q
Sbjct: 35 RGVYDYGYKKPSEIQQRAL-VPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQV 93
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCS-QEIKCLNLSSGNVSGNLLKSLLTENPE 146
++L P+RELA Q + ++ + + Q C+ G G +K L
Sbjct: 94 -------LVLSPSRELASQTEKTIQAIGAHTNIQAHACIG---GKSIGEDIKKL-ERGVH 142
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
+ TP ++ D++ + +K LV+DE D +L+ G ++ + + LP +Q L
Sbjct: 143 AVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALP--HDIQVCL 200
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFD-KF-LLCYVIFK 264
+SATL +I + ++F P + + DE+ + K QYYV V + + KF LC + +
Sbjct: 201 ISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIK--QYYVDVDKEEWKFDTLCDLYGR 258
Query: 265 LGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
L + + +IF N + L + ++ + R I+ +F ++LI
Sbjct: 259 LTI--NQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLI 316
Query: 325 ATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRG 384
A+D +D TV+ N P+L
Sbjct: 317 ASDVWARG-------------------IDVQTVSHVINYDIPNNPEL------------- 344
Query: 385 VDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV-----VPLKEFGKHKPSMI 439
Y+HRIGR R G+ G++I+FV LK+ +H + I
Sbjct: 345 --------------------YIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKI 384
Query: 440 KSAKKD 445
+ D
Sbjct: 385 REMPAD 390
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 91.3 bits (225), Expect = 4e-18
Identities = 64/198 (32%), Positives = 107/198 (53%), Gaps = 9/198 (4%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ- 86
+A+ + G T +Q + + L K D + KA TG+GK++A+L+P I+T+L + +
Sbjct: 341 KALSASGILKMTRVQDATLSECLDGK-DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKG 399
Query: 87 -NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP 145
N +IL PTRELA Q+ + L+ F I L G + L +E
Sbjct: 400 VNKVAPIFALILCPTRELASQIAAEGKALLKF-HDGIGVQTLIGGTRFKLDQQRLESEPC 458
Query: 146 EILIATPAKLVDLLDAQDVNIDR---LKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSL 202
+ILIATP +L+D ++ + R LK ++DE DL+L G++ D+ KI + LP ++
Sbjct: 459 QILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQR-- 516
Query: 203 QTFLMSATLNDDIQHLKQ 220
Q+ L SAT+ +++ + Q
Sbjct: 517 QSLLFSATIPKEVRRVSQ 534
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 90.9 bits (224), Expect = 5e-18
Identities = 73/291 (25%), Positives = 140/291 (48%), Gaps = 12/291 (4%)
Query: 41 IQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEG---ATLGVIL 97
IQ+S + L + D++ +A TG GKTLA+++P+++++++ + G + ++L
Sbjct: 122 IQASTFDMVL-DGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVL 180
Query: 98 VPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVD 157
+PTRELA+QV + CL G S + + L +I++ TP ++ D
Sbjct: 181 LPTRELAKQVAADFDAYGGSLGLSSCCLY---GGDSYPVQEGKLKRGVDIVVGTPGRIKD 237
Query: 158 LLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQH 217
++ Q+++ L+F V+DE D +L G+ ED+ I ++ +QT L SATL +++
Sbjct: 238 HIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKN 297
Query: 218 LKQQFC-RSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFV 276
+ +F R + L ++ K + + + L I G+T+IF
Sbjct: 298 ISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFA 357
Query: 277 NNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+ L +L+ S L+ E+P + R+ + F + L+AT+
Sbjct: 358 ETKVQVSELSGLLD----GSRALHGEIPQSQREVTLAGFRNGKFATLVATN 404
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 90.5 bits (223), Expect = 6e-18
Identities = 75/302 (24%), Positives = 147/302 (47%), Gaps = 14/302 (4%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP ++ D++ +A +G GKT +++ +Q I +
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGT-DVLCQAKSGMGKTAVFVLSTLQQI-------EP 115
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSL-LTENPE 146
+G ++L TRELA Q+ + + + N+ ++ +++P
Sbjct: 116 VDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPH 175
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTF 205
I++ATP +L L+ + + ++ +K V+DE D +L + + D+ ++ P +K Q
Sbjct: 176 IVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQK--QVM 233
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
+ SATL+++I+ + ++F ++P + + DDE L Q+YVK+ E K +
Sbjct: 234 MFSATLSNEIRPICKKFMQNPLEIYV-DDETKLTLHGLQQHYVKLEEKAKNRKINDLLD- 291
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
L + +IFV ++ R L +L + S ++ LP R + F ++ +A
Sbjct: 292 SLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVA 351
Query: 326 TD 327
TD
Sbjct: 352 TD 353
Score = 50.1 bits (118), Expect = 1e-05
Identities = 24/70 (34%), Positives = 40/70 (56%), Gaps = 15/70 (21%)
Query: 383 RGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSA 442
RG+D + V V+N+D+P + SY+HR+GR R G G++I+F S+
Sbjct: 357 RGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITF---------------SSS 401
Query: 443 KKDEKILGRI 452
++D +IL +I
Sbjct: 402 EEDSQILDKI 411
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 90.5 bits (223), Expect = 6e-18
Identities = 83/303 (27%), Positives = 136/303 (44%), Gaps = 14/303 (4%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+ ++ + PT IQ I +L D++ A TGSGKTLA +IPV++ + K +
Sbjct: 89 EGLKDNDYTKPTEIQRDTIAYSLTGS-DVVGAAKTGSGKTLALVIPVLEALWRAKWSPDY 147
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
GA +I+ PTRELA Q + V C + G S + I
Sbjct: 148 GLGA---LIISPTRELALQTFSTIN--AVGAHHGFSCGLVIGG--SDVAFERNRISGINI 200
Query: 148 LIATPAKLVDLLDAQ-DVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
++ TP +L+ +D ++ D L+ LV+DE D +L G+ + L I LP + QT L
Sbjct: 201 IVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAER--QTLL 258
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SAT +++ L + P + ++++ L Q YV V E K + +
Sbjct: 259 FSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIEAH 318
Query: 267 LIKGKTLIFVNNIDRGYRLKLVLEQF--GIKSCILNSELPANSRQHIVEEFNKNVYQLLI 324
K K+L+FV++ + L Q G+ L + R +F+++ +LI
Sbjct: 319 R-KKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLI 377
Query: 325 ATD 327
ATD
Sbjct: 378 ATD 380
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 89.7 bits (221), Expect = 1e-17
Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 11/302 (3%)
Query: 33 IGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGAT 92
+G K T IQ +P+ + +IA A TG GKT+ YL+P++ +L + +
Sbjct: 127 LGIKLLTGIQKQGMPVVHGNEHCLIA-AETGCGKTITYLLPIVDKLLQKEVVTERKLNTP 185
Query: 93 LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATP 152
+IL P RELA Q+ V EKL +K +L GN L+ + E +IL+AT
Sbjct: 186 RVLILTPGRELATQIAGVTEKLTQ--GTNLKVQSLLGGNTK-QLMMNPQFEEVDILVATL 242
Query: 153 AKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLR------KSLQTFL 206
L L+ +++++ LV+DE D +L + + L+ R P Q L
Sbjct: 243 GALSKLVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMIL 302
Query: 207 MSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLG 266
SAT+ + + + + I ++ +++ + + Q ++++ + D+ + K
Sbjct: 303 ASATMPTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHD 362
Query: 267 LIKGKTLI-FVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
L K + LI F N + + L G+ LN ++ R E+F +L
Sbjct: 363 LAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLST 422
Query: 326 TD 327
TD
Sbjct: 423 TD 424
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 89.4 bits (220), Expect = 1e-17
Identities = 108/462 (23%), Positives = 179/462 (38%), Gaps = 127/462 (27%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQ--------EKRDIIAKASTGSGKTLAYLIPVIQTIL 79
QA++ + K +Q IP L+ RDI A TGSGKTLA+ IP++Q +
Sbjct: 150 QALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLL- 208
Query: 80 DHKKADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQ-EIKCLNLSSGNVSGNLLK 138
Q + ++++P ELA QV V+ +L CS+ E++ LS + + +
Sbjct: 209 -----SQRVDCKVRALVVLPVAELALQVYRVISEL---CSKTELEVCLLSKQHKLEDEQE 260
Query: 139 SLLTE-------NPEILIATPAKLVDLLDA-QDVNIDRLKFLVIDEVDLV---------- 180
L+ + +I++ TP +LVD L A + + LKFLVIDE D +
Sbjct: 261 KLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLY 320
Query: 181 ------------LTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAI 228
L G Q L + K L SATL+ D + L+ P +
Sbjct: 321 HLDSHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRL 380
Query: 229 LKL--------------NDDEVNKDQTKLIQYYVKVGEF-DKFLLCYVIFK----LGLIK 269
D E D + + Y E +++ + + K L++
Sbjct: 381 FATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVE 440
Query: 270 ----GKTLIFVNNIDRGYR----LKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQ 321
+ L F N+ D+ R LK++ +++ K L+ L A R + +F
Sbjct: 441 KYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKIN 500
Query: 322 LLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGV 381
LI +D +
Sbjct: 501 GLICSD----------------------------------------------------AL 508
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISIS 423
+RG+D +V VL+++ P +Y+HR+GRTARAG+ G +++
Sbjct: 509 ARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVT 550
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 88.6 bits (218), Expect = 2e-17
Identities = 111/473 (23%), Positives = 186/473 (38%), Gaps = 135/473 (28%)
Query: 41 IQSSAIPLALQEKR---------DIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGA 91
+Q++ +PL LQ+ R D+ A+TGSGKTL+Y+IP++Q L H+ +
Sbjct: 152 VQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQ-CLSHRTVPR----- 205
Query: 92 TLGVILVPTRELAQQVLEVVEKLIVFCSQEI------KCLNLSSGNVSGNLLKSLLTENP 145
V++VPTREL QV + E + ++ K L + ++G+ + +
Sbjct: 206 LRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRI---- 261
Query: 146 EILIATPAKLVD-LLDAQDVNIDRLKFLVIDEVDLVLTFGYQE----------------- 187
++L++TP +LVD + + + ++ L+++VIDE D +L +Q+
Sbjct: 262 DVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQN 321
Query: 188 --------------DLTKISERLPLR--KSLQTFLMSATLNDDIQHLKQQFCRSPAILKL 231
L I LP R LQ + SATL D + +P ++ +
Sbjct: 322 KSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLV 381
Query: 232 NDDEVNKDQ--------------TKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVN 277
+ ++ D L +Y+V V LL ++I L L FV
Sbjct: 382 QNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHLIHSKNLT--NILCFVK 439
Query: 278 NIDRGYRLKLVLEQFGIK-----SC-ILNSELPANSRQHIVEEFNKNVYQLLIATDDTXX 331
+ + RL +LE SC + S L + R+ I+ F LL+ +D
Sbjct: 440 SNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMAR 499
Query: 332 XXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVA 391
++V + V D P L+V
Sbjct: 500 G----------------IDVANTQNVINYD-------PPLSV------------------ 518
Query: 392 CVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIKSAKK 444
+SYVHRIGRTARAG+ G + + V G H ++K ++
Sbjct: 519 -----------RSYVHRIGRTARAGREGFAWTLV--QSHEGHHFSKLVKQLRR 558
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 88.6 bits (218), Expect = 2e-17
Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 21/300 (7%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLG 94
F PT IQ++AIP+AL K D+I ++ +G+GKTL Y+I V+Q+ + N A
Sbjct: 45 FVTPTKIQAAAIPMALA-KMDLIIQSKSGTGKTLIYVIAVVQSF----NPNINQPHA--- 96
Query: 95 VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAK 154
+I+VPTRELA QV + L ++ KC G K + ++I TP +
Sbjct: 97 MIVVPTRELAIQVQDTFFHLCK-SFRDFKCSAFIGGTDVAKDRKRM--NESRVIIGTPGR 153
Query: 155 LVDLLDAQDVNIDRLKFLVIDEVD-LVLTFGYQEDLTKISERLPLRKSLQTFLMSATLND 213
L+ L + + ++ +L+ LV+DE D L T Q ++K+ E +P K+ Q SAT +
Sbjct: 154 LLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMP--KNRQIIACSATYDQ 211
Query: 214 DIQHLKQQFCRSPAILKLNDDE-----VNKDQTKLIQYYVKVGEFD-KFLLCYVIFKLGL 267
++ + P ++ ++ + + +L Q V E K + IF L
Sbjct: 212 NLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQIFN-QL 270
Query: 268 IKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
+ +IF ++ R K L GI +++ + + R H+ E + ++L+ATD
Sbjct: 271 PYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATD 330
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 87.8 bits (216), Expect = 4e-17
Identities = 93/404 (23%), Positives = 169/404 (41%), Gaps = 78/404 (19%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQND 88
A++ + + PT IQ IP A+ E++ ++ + TGSGKTLAYL+P++Q + + + D+ +
Sbjct: 126 ALQELNIEVPTEIQCIGIP-AVMERKSVVLGSHTGSGKTLAYLLPIVQVLSELMREDEAN 184
Query: 89 EGATL------GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNL----LK 138
G V+L PTREL++QV Q+ S VSG +
Sbjct: 185 LGKKTKPRRPRTVVLCPTRELSEQVC---------LHQDYHHARFRSILVSGGSRIRPQE 235
Query: 139 SLLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL 198
L ++++ TP +++ ++ ++ + +LV+DE D + G+ ++ K PL
Sbjct: 236 DSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKF--LAPL 293
Query: 199 RKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKV-GEFDKFL 257
+ ++ + + + ++F I L ++K ++K+ G DK
Sbjct: 294 NQHIKVVNEIVSFQAVQKLVDEEF---QGIEHLRTSTLHKKIANARHDFIKLSGGEDKLE 350
Query: 258 LCYVIFKLGLIKG-KTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFN 316
+ + L KG K ++F N ++ + L + I + + E+PA R +++F
Sbjct: 351 ALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFK 410
Query: 317 KNVYQLLIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKD 376
E D T+ D A
Sbjct: 411 D--------------------------------EEGDCPTLVCTDLA------------- 425
Query: 377 KEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGI 420
+RG+D +V V+ FD P + Y+HR GRTAR G G+
Sbjct: 426 -----ARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGL 463
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 87.4 bits (215), Expect = 5e-17
Identities = 91/403 (22%), Positives = 181/403 (44%), Gaps = 81/403 (20%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI + GF+ P+LIQ SAIP L+ +++ ++ +G+GKT+AY V L + K +
Sbjct: 64 KAIYNQGFEKPSLIQKSAIPHILRG-HNVVVQSKSGTGKTIAYTCGV----LGNTKIGER 118
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTEN--P 145
T +++ PTREL+ QV EV+ L ++ + LK+ +T++
Sbjct: 119 ----TQVMVVTPTRELSTQVTEVISGLAGPLGIKVF-----------SALKNKITDSIGE 163
Query: 146 EILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDL--TKISERLPLRKSLQ 203
E+++ +P ++ L++ +N +K +V+DE D++L +D+ T+ L L Q
Sbjct: 164 EVVVGSPGTILKLMELGKLNYKGVKMIVLDEADILL----DKDMMGTQTFRILKLISGAQ 219
Query: 204 TFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNK-DQTKLIQYYVKVGEFDKFLLCYVI 262
SAT ++ ++ + + +P +K+ ++ K D+ KL +Y++ +K +
Sbjct: 220 MIFFSATFSEQVKQTIEFY--APDAVKMYEERNGKPDEIKL--FYIEAEGENKRRALKSL 275
Query: 263 FKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQL 322
++ I + Y K + + SC L+ +L R+ V +F + ++
Sbjct: 276 YEYLSISQMIIFVSTKATVNYLRKKLEDDLHSVSC-LHGDLEIEEREKAVGDFRSSKSKI 334
Query: 323 LIATDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVS 382
L+ TD ++ P++N+ + + +
Sbjct: 335 LLTTDVF---------------------------------SRGMDIPQVNLIVNYDLPIY 361
Query: 383 RGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
RGV + ++Y+HRIGR+ R G++G + FV
Sbjct: 362 RGV--------------ASTQTYIHRIGRSGRFGRTGFVVDFV 390
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 87.4 bits (215), Expect = 5e-17
Identities = 85/310 (27%), Positives = 147/310 (47%), Gaps = 41/310 (13%)
Query: 36 KHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHK-KADQNDEGAT-- 92
+ P+ IQ +IP + E+R+++A A TGSGKTLA+ +PVI IL+ K +AD + ++
Sbjct: 147 RQPSPIQMQSIPF-MTERRNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSKL 205
Query: 93 LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATP 152
L V+L PTRELA Q + + +C+ ++S+ N SG + ++ +IL++TP
Sbjct: 206 LAVVLEPTRELAAQ---TYTEFLKYCAN----TSISAANFSG---EETDIQHADILVSTP 255
Query: 153 AKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS-----LQTFLM 207
++V LD D + L++LV+DE D + +D ++ + K+ +
Sbjct: 256 NRIVFHLDKIDTS--SLRWLVVDESDRLFEVVEGQDKCFRNQLAAIYKACDAKCTRVAFF 313
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEV--------NKDQTKLIQYYVKVGEFDKFLLC 259
SAT + ++ +++C K N DE+ N T + Q G D +
Sbjct: 314 SATFSHEV----EKWC------KENIDEIGMVCVGERNSSNTSVKQKLTYCGTEDGKKIA 363
Query: 260 YVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQF--GIKSCILNSELPANSRQHIVEEFNK 317
K L+FV + DR +L +L +K +NS R +E F +
Sbjct: 364 IRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRR 423
Query: 318 NVYQLLIATD 327
+L+ T+
Sbjct: 424 GEIWVLVCTE 433
Score = 62.8 bits (151), Expect = 1e-09
Identities = 41/130 (31%), Positives = 73/130 (55%), Gaps = 22/130 (16%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKEFGKHKPSMIK 440
+ RG+D +V V+N+DLPT+ SY+HR+GRT RAGKSG ++++ F IK
Sbjct: 435 LGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTY------FTDADMKYIK 488
Query: 441 SAKKDEKILGRIIKQQAKLGFELQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKEL 500
S + +I+Q GF++ Y ++K+V R R +D + + A + +I +
Sbjct: 489 S-------IATVIRQS---GFDVPEYLMEMKKVS--RDRKKD----MLKHAPKRHKIAIV 532
Query: 501 KQELLASEKL 510
K++++ +K+
Sbjct: 533 KEQVIKKKKM 542
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 86.3 bits (212), Expect = 1e-16
Identities = 65/201 (32%), Positives = 108/201 (53%), Gaps = 15/201 (7%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+A+ + G T +Q + + L K D + KA TG+GK++A+L+P I+T+L KA +
Sbjct: 388 KALSASGIVKMTRVQDATLSECLDGK-DALVKAKTGTGKSMAFLLPAIETVL---KAMNS 443
Query: 88 DEGA-----TLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLT 142
+G +IL PTRELA Q+ K ++ I L G + L +
Sbjct: 444 GKGVHKVAPIFVLILCPTRELASQI-AAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLES 502
Query: 143 ENPEILIATPAKLVDLLDAQDVNIDR---LKFLVIDEVDLVLTFGYQEDLTKISERLPLR 199
E +ILIATP +L+D ++ + R LK ++DE DL+L G++ D+ KI + LP +
Sbjct: 503 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQ 562
Query: 200 KSLQTFLMSATLNDDIQHLKQ 220
+ Q+ L SAT+ +++ + Q
Sbjct: 563 R--QSLLFSATIPKEVRRVSQ 581
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 85.9 bits (211), Expect = 2e-16
Identities = 81/318 (25%), Positives = 142/318 (44%), Gaps = 25/318 (7%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTIL-----DHK 82
+ ++ I + + IQ + IP L + D++ +A T +GKT A+ +P+I IL
Sbjct: 394 ETLKRIKYNNVRTIQGAMIPQVL-DGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRN 452
Query: 83 KADQNDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLT 142
KA Q+D L +IL PTRELA Q+ E L +C + LS G + +
Sbjct: 453 KARQDD--GPLALILAPTRELAAQIHEA---LRTYCQNTDIIVLLSYGQSDRARSLNEIR 507
Query: 143 ENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL------TFGYQEDLTKISERL 196
+ILI T +++D +++ L+FLV DE D +L G+ + K + +
Sbjct: 508 NGCDILIGTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQDMKKDPLGHLGAIIKDAGFM 567
Query: 197 PLRKSLQTFLMSATLNDDIQHLKQQFCR----SPAILKLNDDEVNKDQTKLIQYYVKVGE 252
+ QT + SAT N + + + + ++K+ + ++++ G
Sbjct: 568 ESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLSKRVNLEFFECKGL 627
Query: 253 FDKFLLCYVIFKLGLIKGKTL---IFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQ 309
+K I K + GKTL IFV D+ L G+ + L+ + + R+
Sbjct: 628 AEKNAKLREILKQN-VNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMRE 686
Query: 310 HIVEEFNKNVYQLLIATD 327
++ +F N LL+ TD
Sbjct: 687 KLINDFKSNRVNLLVTTD 704
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 84.7 bits (208), Expect = 4e-16
Identities = 90/313 (28%), Positives = 144/313 (45%), Gaps = 35/313 (11%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
Q I GF+ PT IQ AIP+ L R+++A A TGSGKTLA+ IP++ + Q
Sbjct: 70 QNILDAGFQMPTPIQMQAIPVMLHG-RELLASAPTGSGKTLAFSIPILMQL------KQP 122
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+I+ PTRELA Q+ + K+ I ++ ++ V+ ++ +I
Sbjct: 123 ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA--VAAKKFGPKSSKKFDI 180
Query: 148 LIATPAKLVDLL--DAQDVNIDRLKFLVIDEVDLVL---TFGYQEDLTKISERLPLRKSL 202
L+ TP +L+ LL D +++ +++LV+DE D + G+++ L I K +
Sbjct: 181 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK-V 239
Query: 203 QTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEV--------NKDQTKLIQYYVKVG-EF 253
+ + SAT D+ +Q+C KLN D V N + Q + VG E
Sbjct: 240 RRAMFSATFAYDV----EQWC------KLNLDNVISVSIGARNSAVETVEQELLFVGSET 289
Query: 254 DKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVE 313
K L + K G L+FV +I+R L L GI ++++E R + V
Sbjct: 290 GKLLAMRELVKKG-FNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 348
Query: 314 EFNKNVYQLLIAT 326
F +LI T
Sbjct: 349 SFRAGKIWVLICT 361
Score = 58.5 bits (140), Expect = 3e-08
Identities = 24/44 (54%), Positives = 34/44 (76%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
++RG+DFK V V+N+D PT++ Y+HRIGRT RAG G +I+F
Sbjct: 364 LARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITF 407
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 84.0 bits (206), Expect = 6e-16
Identities = 72/302 (23%), Positives = 148/302 (48%), Gaps = 20/302 (6%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEK-RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQ 86
+ I S+ F+ P+ IQ A+PL L R++I ++ +G+GKT A+ + ++ + Q
Sbjct: 127 KGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ 186
Query: 87 NDEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
+ L P+RELA+Q+++VV ++ + E+K ++ + ++ K + +
Sbjct: 187 -------AICLAPSRELARQIMDVVTEMGKYT--EVK----TAFGIKDSVPKGAKID-AQ 232
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTF 205
I+I TP ++DL+ + ++ +K V+DE D +L G + +I LP ++ Q
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP--RNTQIV 290
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
L SAT ++ ++ ++F + ++L +E++ + K + Y E K+ + ++ L
Sbjct: 291 LFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL-YMDCQSEEHKYNVLVELYGL 349
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
L G+++IF D + + G L L R I++ F ++L+
Sbjct: 350 -LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVT 408
Query: 326 TD 327
T+
Sbjct: 409 TN 410
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 82.0 bits (201), Expect = 2e-15
Identities = 82/311 (26%), Positives = 139/311 (44%), Gaps = 47/311 (15%)
Query: 54 RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEK 113
RD+ A TGSGKT+ Y++PV+ + VILVP + L Q+++ ++
Sbjct: 260 RDVAIAAPTGSGKTICYVLPVLAAV------GSKPSKILQAVILVPVQTLVAQIVDEFKR 313
Query: 114 LIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQ---DVNIDRLK 170
S K ++LS N + L ++ P +++ATPA+LV L ++ +++ +L+
Sbjct: 314 WNDE-SGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLR 372
Query: 171 FLVIDEVD-------------LVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQH 217
FL++DE D + G E + + + + R++ Q ++SATL+ D++
Sbjct: 373 FLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKDVEE 432
Query: 218 LKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG---------------EFDKFLLCYVI 262
L P + V KD T I V KF V
Sbjct: 433 LHLWNLFKPRLFSATAVSV-KDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFHPLAVY 491
Query: 263 FKLGLIK-GKTLIFVNNIDRGYRLKLVL-----EQFGIKSCILNSELPANSRQHIVEEFN 316
++ K +TLIFVN + RL VL +QF + ++L R ++E+FN
Sbjct: 492 QQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVD--YFTAQLFGKRRYKMLEKFN 549
Query: 317 KNVYQLLIATD 327
KN ++LI +D
Sbjct: 550 KNENRVLICSD 560
Score = 50.4 bits (119), Expect = 7e-06
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISIS 423
++RG D V CV+N++LP K +VHR GRT RAG+ G IS
Sbjct: 562 LARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVIS 604
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 80.1 bits (196), Expect = 9e-15
Identities = 100/413 (24%), Positives = 174/413 (41%), Gaps = 45/413 (10%)
Query: 60 ASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL-------GVILVPTRELAQQVLEVVE 112
A TGSGKT+AYLIP+I L ++ + + TL +ILVPT EL QV E V
Sbjct: 164 AETGSGKTMAYLIPLID-YLKRQELETPELWETLRKNVLIRSIILVPTHELVDQVYETVS 222
Query: 113 KLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQ-----DVNID 167
K + +LL++ + +IL+ TP KL++L + D +
Sbjct: 223 KTKTLLG--LNSFKWDKATSYRDLLEN-IKNRIDILVTTPGKLLNLFSIRMITRPDKVLS 279
Query: 168 RLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPA 227
++ F+V+DE D +L + E+ +R+P L SAT+ + Q+ P
Sbjct: 280 KVGFVVLDEADTLLDRSWLEETHSAIKRIPNINHL--IFCSATIPQEFNKTMQRL--FPT 335
Query: 228 ILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIK--GKTLIFVNNIDR--GY 283
++ + ++K L +F FK IK +TL ++N D G+
Sbjct: 336 VVPIMTPRLHKLPFAL--------DFKVINSALSPFKGSKIKALAQTLYAISNDDTEPGF 387
Query: 284 RLKLVL---EQFGIKSCI--LNSELPANSRQHIVEE-FNKNVYQLLIATDDTXXXXXXXX 337
+ ++ E+ + + LN + N+ E+ F + +++
Sbjct: 388 EKRCIIFVNEKKNVPEIVNLLNKKFGHNAIGLTGEDTFEERSEKIMPFLSPPRPLSEVVA 447
Query: 338 XXXXXXXXXGLVEVVDDSTV-----TTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVAC 392
E+ D + V T N L+V + ++RG++FK V
Sbjct: 448 QSTSPPTSLKKFEIPDSNIVIGKLKNTNSNGTAPSNKSLHVLVTTDL-MARGLNFKGVRN 506
Query: 393 VLNFDLPTTAKSYVHRIGRTARAGKSG-ISISFVVPLKEFGKHKPSMIKSAKK 444
V+ +D+P T+ +HR+GRTAR + G + + K + K P +IK ++
Sbjct: 507 VVLYDVPKTSIDLIHRVGRTARMKQGGRVFMLTDSKTKSWAKALPKIIKKHQR 559
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 79.7 bits (195), Expect = 1e-14
Identities = 92/390 (23%), Positives = 165/390 (41%), Gaps = 78/390 (20%)
Query: 54 RDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEG-ATLGVILVPTRELAQQVL---- 108
+D+IA+A TG+GKT ++ IP+I+ + H + G A ++L PTRELA QV
Sbjct: 156 KDLIAQARTGTGKTFSFAIPLIEKL--HGELQDRKRGRAPQVLVLAPTRELANQVSKDFS 213
Query: 109 EVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNIDR 168
++ +KL V C G G + + +IL+ TP ++ D + +++ +
Sbjct: 214 DITKKLSVAC--------FYGGTPYGGQFERM-RNGIDILVGTPGRIKDHIQNGKLDLTK 264
Query: 169 LKFLVIDEVDLVLTFGYQ---EDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRS 225
LK +V+DEVD +L G+ E++ ++ + + QT L SAT + ++ +++ +S
Sbjct: 265 LKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKS 324
Query: 226 P-AILKLNDDEVNKDQTKLIQYYVKVGEFDK-FLLCYVIFKLGLIKGKTLIFVNNIDRGY 283
+ L + K + +K + ++ VI +G+T+IF
Sbjct: 325 TYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQ 384
Query: 284 RLKLVLEQFGIK--SCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXXXXXXXXX 341
L + IK + L+ ++P R+ ++ F + +L+AT+
Sbjct: 385 ELS---QNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATN-------------- 427
Query: 342 XXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTT 401
GL D + Q P +VE
Sbjct: 428 -VAARGLDIPEVDLVI--------QSSPPKDVE--------------------------- 451
Query: 402 AKSYVHRIGRTARAGKSGISISFVVPLKEF 431
SY+HR GRT RAG++G+ I F +E+
Sbjct: 452 --SYIHRSGRTGRAGRTGVCICFYQHKEEY 479
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 78.6 bits (192), Expect = 3e-14
Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 29/311 (9%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
Q + S F HPT IQ A+P+ LQ +R ++A A TGSGKTLA+L P+I + HK
Sbjct: 132 QNLLSRNFDHPTPIQMQALPVLLQ-RRALMACAPTGSGKTLAFLTPIINGLRAHKTT--- 187
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
++L PTRELAQQ+ +L ++ +S + + + + +I
Sbjct: 188 ---GLRALVLAPTRELAQQIYRECAELT--RETGLRTHFISKVSEAKQKHGAECKQRYDI 242
Query: 148 LIATPAKLVDLLDAQD--VNIDRLKFLVIDEVDLVLTFG---YQEDLTKISERLPLRKSL 202
L++TP ++ LL + +++ +++ V+DE D ++ G ++E L I
Sbjct: 243 LVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKC 302
Query: 203 QTFLMSATLNDDI-----QHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVG-EFDKF 256
F SAT + +HLK ++++ N + Q + VG E K
Sbjct: 303 VAF-FSATYTVPVAKWALRHLKN-------LVRITIGVQNSATETVQQELLFVGSEGGKL 354
Query: 257 LLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFN 316
+ + + GL + L+FV + +R +L L GI ++++E + R + V+ F
Sbjct: 355 VAIRDLVRQGL-QPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFR 413
Query: 317 KNVYQLLIATD 327
+ +LI T+
Sbjct: 414 EGSIWVLICTE 424
Score = 58.5 bits (140), Expect = 3e-08
Identities = 25/44 (56%), Positives = 33/44 (74%)
Query: 381 VSRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+ RG+DFK V V+N+D P T SY+HRIGRT RAG+ G +I+F
Sbjct: 426 MGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITF 469
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 77.0 bits (188), Expect = 7e-14
Identities = 52/181 (28%), Positives = 95/181 (51%), Gaps = 17/181 (9%)
Query: 52 EKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVL--- 108
E +D+IA+A TG+GKT ++ IP+I+ + +++ + + ++L PTRELA QV
Sbjct: 173 EGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKV-LVLAPTRELANQVAKDF 231
Query: 109 -EVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNID 167
++ KL V C G S + + +IL+ TP ++ D L + +++
Sbjct: 232 KDITRKLSVACFY---------GGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLS 282
Query: 168 RLKFLVIDEVDLVLTFGYQ---EDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCR 224
+L+ +V+DEVD +L G+ ED+ S + + QT L SAT + + +++ +
Sbjct: 283 KLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMK 342
Query: 225 S 225
S
Sbjct: 343 S 343
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 77.0 bits (188), Expect = 7e-14
Identities = 66/230 (28%), Positives = 114/230 (48%), Gaps = 23/230 (10%)
Query: 55 DIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPTRELAQQVLEVVEKL 114
D++ ++ TGSGKTLA+++P+++ ++ + K D GA +IL P+REL Q++ V++
Sbjct: 48 DVVVESPTGSGKTLAFVLPMMR-MIQNAKLQPADIGA---LILSPSRELCSQIVSVIQPF 103
Query: 115 IVFCSQEIKCLNLSSGNVSGNL-----LKSLLTENPEILIATPAKLVDLLDAQDVNIDR- 168
+ LNL+ V+G +K +N IL+ATP +L ++ + I R
Sbjct: 104 -------AEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARK 156
Query: 169 ---LKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRS 225
L+ LVIDE D +++ + +I +P K +T L SAT + L R+
Sbjct: 157 MRTLQLLVIDEADRFNEIQFEDHMREILSCIP--KQRRTGLFSATQVKEEDDLMVFGLRN 214
Query: 226 PAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIF 275
+K+ + + + L YYV+ +K +C + K K LIF
Sbjct: 215 AKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDK-KILIF 263
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 72.8 bits (177), Expect = 1e-12
Identities = 79/302 (26%), Positives = 133/302 (43%), Gaps = 15/302 (4%)
Query: 34 GFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATL 93
GF+ T +Q + + + + +A TG+GKTLA+L+ + +L K + +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVL--KGKPRLNSSKIH 114
Query: 94 GVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPA 153
VIL PTRELA Q+ E KL I+ GN ++ N +LIATP
Sbjct: 115 SVILSPTRELALQIFEEARKLTY--GTGIRVSYAIGGNSKMREENAIRRGNANLLIATPG 172
Query: 154 KLVDLLDAQDVNIDRLK--FLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATL 211
+L D L + ++ L ++DE D ++ G+ E + I E + K+ + SAT+
Sbjct: 173 RLEDHLQNPRI-LESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKT-RKLCFSATM 230
Query: 212 NDDIQHLKQQFCRSPAILKLNDDEVNKDQT-KLIQYYVKVGEFDKFLLCYVIFKLGLI-- 268
+ ++ + + L +N + N+ T + + +V + DK + L
Sbjct: 231 PPKVSNVFRGILGTDFKL-INCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQLTSS 289
Query: 269 --KGKTLIFVNNIDRGYRLKLVLE-QFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
+ ++F+ I + VLE I IL+S L R+ I E F K +L A
Sbjct: 290 NPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFA 349
Query: 326 TD 327
TD
Sbjct: 350 TD 351
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 72.4 bits (176), Expect = 2e-12
Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 60/298 (20%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
+R+I ++ PT IQ IPL L E+R ++ TGSGKTL YLIP IQ + +K
Sbjct: 22 LRNILYEGPTPIQRKTIPLIL-ERRSLMGVGRTGSGKTLCYLIPAIQRAISGEKT----- 75
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILI 149
+++VPT+EL Q V+++L + K + I
Sbjct: 76 -----LVIVPTKELVIQARRVLKRLARGIEEAWKLIE----------------------I 108
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSA 209
TP K+ + ++ D LV+DE+D +L + L + +R+ S Q SA
Sbjct: 109 CTPGKI------EGMSAD---MLVVDEIDRILE---EPSLKSVFDRINESLSCQKVFFSA 156
Query: 210 TLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIK 269
TL D P +K+ + E ++T ++ E + L ++ K
Sbjct: 157 TLPDH-----------PLNMKVVEIETRINETVKHFFFYIPSESKEAALLRILDKTR--- 202
Query: 270 GKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATD 327
KT++F L +L + +S + S + +R+ +FN + + +L+ TD
Sbjct: 203 -KTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVTD 259
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 72.4 bits (176), Expect = 2e-12
Identities = 93/396 (23%), Positives = 150/396 (37%), Gaps = 112/396 (28%)
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLI-VFCSQEIKCLNLSSGNVSGNLLKSLLTENPE 146
D L VIL PTREL QQ + ++ V S +I+C+ L++G +L++L T +
Sbjct: 302 DSSTPLCVILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTLET-GCD 360
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLT--FGYQEDLTKISERLPL----RK 200
I++ TP+++ DL+ + L+F+VIDE+D L + I LPL
Sbjct: 361 IVVGTPSRVFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGT 420
Query: 201 SLQTFLMSATLND---------------------------DIQHL---------KQQFCR 224
Q SATL++ D+ H+ KQ +
Sbjct: 421 RRQVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQ 480
Query: 225 SPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLL---------CYVIFKL-GLIKGKTLI 274
+ L DD V+ ++ G DK + YV+ + L K ++
Sbjct: 481 MHQQVHLEDDHVHDGD------QIRPGTTDKDTISLGTKILKGIYVVRAIHALQMDKAIV 534
Query: 275 FVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTXXXXX 334
F + ++ L+Q + + L+ + A RQ +E F K + + L+ +D
Sbjct: 535 FCRTKQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARG-- 592
Query: 335 XXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVL 394
L+V+ GV F V+
Sbjct: 593 ------------------------------------LDVQ---------GVPF-----VI 602
Query: 395 NFDLPTTAKSYVHRIGRTARAGKSGISISFVVPLKE 430
+ LP YVHRIGR RA + G+SIS V +E
Sbjct: 603 SVTLPDEKSMYVHRIGRVGRAERMGLSISLVSEYEE 638
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 72.4 bits (176), Expect = 2e-12
Identities = 75/318 (23%), Positives = 147/318 (45%), Gaps = 38/318 (11%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
Q + G+ PT IQ+ +A +E ++I+ + G+GKTL YL+P I + + + Q+
Sbjct: 45 QQLEDQGYDGPTPIQAQTWSIA-KEGKNIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQH 103
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
+G + +ILV RE A V V CL L + G+ ++
Sbjct: 104 KKGPIV-LILVDCREAAVMVQREVLYYTNPLELRTHCL-LGNSQWQGH-------AECDL 154
Query: 148 LIATPAKLVDLLDAQD--VNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTF 205
L+A+ +L+ ++D + V ++R +LV+D +D ++ G + ++ ++ R LR Q
Sbjct: 155 LVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCR--LRPHAQLI 212
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVN---------KDQTKLIQYYVKVGEFDKF 256
+ S + + +++ + +F +++ E+N + + +++ KV K
Sbjct: 213 VSSTSWSSNLKRMANKFLGQYTAIRVG--EINNIGVRLQNIRQRVEVVNGLSKVERLMKE 270
Query: 257 LLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFG-IKSCI----LNSELPANSRQHI 311
L I+ I GK +I+V R K+V E I++C+ ++ A Q I
Sbjct: 271 LT--AIYDTSDIPGKVVIYVK------RQKVVEELVDLIRNCVPCEGIHGGRTAQENQGI 322
Query: 312 VEEFNKNVYQLLIATDDT 329
+ +F Y +++AT T
Sbjct: 323 IHDFGTGAYNIIVATQMT 340
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 70.5 bits (171), Expect = 7e-12
Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 20/294 (6%)
Query: 35 FKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLG 94
FK T IQ+ A+ L + +I A TG+GKTLA+L+P++ I K Q
Sbjct: 15 FKAQTPIQA-AVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDPKVKQTQV------- 66
Query: 95 VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAK 154
+IL P++ELA Q V + ++ +L G L + P I++ T +
Sbjct: 67 LILAPSQELAMQTTAVAREWGALV--DVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGR 124
Query: 155 LVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDD 214
++ +LD + ++ L+ ++ DE D +L+ ++ L ++ +LP +Q L SAT D
Sbjct: 125 VLTMLDGGALKLNGLQTVIFDEADAMLSDERRDSLQALAAQLP--TDVQLGLFSATSGVD 182
Query: 215 IQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLI 274
++++ F + + + D T QY D+ ++ +L K + L+
Sbjct: 183 LKYVADTFGQEVRPVSVGTD-APAAITHEFQY------VDQKAKASLLIQLARNKQQALV 235
Query: 275 FVNNIDRGYRLKLVLEQFGIKSCILNS-ELPANSRQHIVEEFNKNVYQLLIATD 327
F N I ++ L + S + R + F K LL+ TD
Sbjct: 236 FFNTISGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTD 289
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 70.5 bits (171), Expect = 7e-12
Identities = 53/197 (26%), Positives = 104/197 (51%), Gaps = 14/197 (7%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI GF+HP+ +Q IP A+ D++ +A +G GKT +++ +Q I +
Sbjct: 57 RAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQI-------EP 108
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTEN-PE 146
G +++ TRELA Q+ + E+ + +K +++ G +S + +L +N P
Sbjct: 109 VNGQVTVLVMCHTRELAFQISKEYERFSKYMPS-VK-VSVFFGGLSIKKDEEVLKKNCPH 166
Query: 147 ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL-TFGYQEDLTKISERLPLRKSLQTF 205
+++ TP +++ L+ + ++ +K V+DE D +L + D+ +I P K Q
Sbjct: 167 VVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEK--QCM 224
Query: 206 LMSATLNDDIQHLKQQF 222
+ SATL+ DI+ + ++F
Sbjct: 225 MFSATLSKDIRPVCRKF 241
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 70.5 bits (171), Expect = 7e-12
Identities = 53/166 (31%), Positives = 84/166 (49%), Gaps = 15/166 (9%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKA--D 85
+A++ F P IQ+ A + K IIA S GSGKTLAYL+PVIQ + + +
Sbjct: 387 KALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQS-GSGKTLAYLVPVIQRLREEELQGHS 445
Query: 86 QNDEGATLGVILVPTRELAQQVL----EVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLL 141
++ G ++LVPT ELA QVL + + + F S + +G L
Sbjct: 446 KSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVV------TGGFRQRTQLENL 499
Query: 142 TENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQE 187
+ ++LIATP + L++ + + L+ ++DEVD++ FG E
Sbjct: 500 EQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDIL--FGDDE 543
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 67.8 bits (164), Expect = 4e-11
Identities = 51/161 (31%), Positives = 88/161 (53%), Gaps = 18/161 (11%)
Query: 37 HPTLIQSSAIPLALQ-EKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGV 95
HPT +Q IP L E D+I++ TGSGKTL+Y++P I + + G +
Sbjct: 78 HPTDVQRFVIPYILAGEGVDVISE--TGSGKTLSYVLPHIHLL---------ESGDKRLL 126
Query: 96 ILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIATPAKL 155
++VPTREL QV +V K S+ + + +G VS + ++ ++ I+TP +L
Sbjct: 127 VIVPTRELVSQVGQVFRKF----SEGLLRIVEITGEVSIESQRLQVSRPFDVAISTPGRL 182
Query: 156 VDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERL 196
+LL+ + +I +++V+DE D ++ + D+T I ER+
Sbjct: 183 RELLELK--SIGGFEYVVVDEADRLMQHDIRSDVTFILERM 221
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 67.4 bits (163), Expect = 6e-11
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 5/150 (3%)
Query: 91 ATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEILIA 150
A +I+ P+RELA+Q L +++ + L G V+ S+L +I++
Sbjct: 286 APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG 345
Query: 151 TPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPL----RKSLQTFL 206
TP +L DL+ +N+ +++FLV+DE D +L+ GY + + ++ ++P K LQ +
Sbjct: 346 TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV 405
Query: 207 MSATLND-DIQHLKQQFCRSPAILKLNDDE 235
SATL+ D++ L ++ P + L ++
Sbjct: 406 CSATLHSFDVKKLSEKIMHFPTWVDLKGED 435
Score = 50.4 bits (119), Expect = 7e-06
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 364 KKQKKPKLNVEKDKEYGV---------SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTAR 414
+K + K N+E+ K+ V +RG+D V V+N LP ++YVHRIGR R
Sbjct: 549 RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR 608
Query: 415 AGKSGISISFVVPLKE 430
A + G++IS V KE
Sbjct: 609 AERMGLAISLVATEKE 624
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 66.2 bits (160), Expect = 1e-10
Identities = 50/179 (27%), Positives = 88/179 (48%), Gaps = 18/179 (10%)
Query: 29 AIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVI----QTILDHKKA 84
A+R GF P+L Q+ IP L K D+I A TGSGKT YL P+I T LD +
Sbjct: 94 ALRDSGFDRPSLTQAVCIPSILSGK-DVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVT 152
Query: 85 DQNDEG---ATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLL 141
++ + + +IL P L +QV+ +V L+ + + G+ +
Sbjct: 153 NREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGS------QGWP 206
Query: 142 TENPEILIATPAKLVDLLDAQDVN----IDRLKFLVIDEVDLVLTFGYQEDLTKISERL 196
P+I+++TPA L++ ++ + + +K++V DE D++L +Q + ++ L
Sbjct: 207 DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINML 265
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 64.7 bits (156), Expect = 4e-10
Identities = 59/202 (29%), Positives = 93/202 (45%), Gaps = 23/202 (11%)
Query: 28 QAIRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQN 87
+AI+ + F + T IQ I +L E RD++A A TGS ++ + K N
Sbjct: 382 KAIKEMSFMNMTEIQHKTIR-SLLEGRDLLAAAKTGS----------VELTVKLKFMPTN 430
Query: 88 DEGATLGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPEI 147
G IL PTRELA Q+ + + L G + + L I
Sbjct: 431 RPGV---FILSPTRELAMQIFGGAN------THHMHTYGLIMGGDNTSAEAQKLANGINI 481
Query: 148 LIATPAKLVDLL-DAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFL 206
++ATP L+D + + L++LVIDE D +L G++E+L +I + LP + T L
Sbjct: 482 IVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPTCR--HTML 539
Query: 207 MSATLNDDIQHLKQQFCRSPAI 228
+SAT ++ L + + AI
Sbjct: 540 LSATQTRKVEDLARISLKKGAI 561
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 63.5 bits (153), Expect = 8e-10
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 17/143 (11%)
Query: 41 IQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILVPT 100
+ + +PL L++ GSGKTL YL+ + I + + Q VI+VPT
Sbjct: 66 VTETTVPLTLRQ-------ICQGSGKTLTYLLLIFSLINPQRSSVQ-------AVIVVPT 111
Query: 101 RELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKS---LLTENPEILIATPAKLVD 157
REL QV +V L ++K + + G L + L E P IL+AT A L
Sbjct: 112 RELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCH 171
Query: 158 LLDAQDVNIDRLKFLVIDEVDLV 180
+L+ ID ++ LV+DEVD +
Sbjct: 172 MLEKHIFRIDSVRVLVVDEVDFL 194
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 62.8 bits (151), Expect = 1e-09
Identities = 61/280 (21%), Positives = 107/280 (37%), Gaps = 70/280 (25%)
Query: 146 EILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTF 205
EI+IATP L+D+L+ + + + ++V+DE D ++ G++ D+ KI E +P
Sbjct: 384 EIVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMIDVGFEPDVQKILEHMP-------- 435
Query: 206 LMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDKFLLCYVIFKL 265
S +D+ + P + N + + + ++ + E +K I K
Sbjct: 436 -QSEARHDESE--------DPEKMLANFESGKRKPHERVEQVFLMSESEKRKKLLEILKQ 486
Query: 266 GLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIA 325
G T IFVN L LE+ G +C L+ R+ + +L+
Sbjct: 487 GFDPAIT-IFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKPGAKDVLVT 545
Query: 326 TDDTXXXXXXXXXXXXXXXXXGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGV 385
TD +++ D S V
Sbjct: 546 TDVAGHG----------------IDIQDVSMV---------------------------- 561
Query: 386 DFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISFV 425
+N+D+ Y+HRIGR +AGKSG++I+F+
Sbjct: 562 --------VNYDMAKNIDDYIHRIGRMGQAGKSGVAITFL 593
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 59.7 bits (143), Expect = 1e-08
Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Query: 91 ATLGVILVPTRELAQQVLEVVEKLIVFCSQ-EIKCLNLSSGNVSGNLLKSLLTENPEILI 149
A +I+ P+RELA+Q +EK S E++ L L G V K+ L + I++
Sbjct: 286 APQAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSL-LLIGGVRLEEQKAQLMQGTHIVV 344
Query: 150 ATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKS----LQTF 205
TP +L +++++ V + +F V+DE D +L GY E + ++ +++P S LQ
Sbjct: 345 GTPGRLEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMV 404
Query: 206 LMSATLND-DIQHLKQQFCRSPAILKLNDDE 235
+ SATL+ +++ + ++ P + L ++
Sbjct: 405 VCSATLHAFEVKKMAERLMHFPTWVDLKGED 435
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 58.2 bits (139), Expect = 4e-08
Identities = 74/286 (25%), Positives = 116/286 (39%), Gaps = 60/286 (20%)
Query: 33 IGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGAT 92
+ F P L Q IP L+ K ++I +A TGSGKTL+Y +P+++ +
Sbjct: 43 VPFDSPLLTQKVVIPYFLK-KTNVIVQAFTGSGKTLSYCLPLVEMARGR---------SL 92
Query: 93 LGVILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENPE------ 146
G ILVP + L +QV VV +EIK L V G+ + L E E
Sbjct: 93 FGAILVPGKPLVRQVYRVV--------REIKHEGLKVVGVYGDGREDFLVEEGEKGELVQ 144
Query: 147 --------------------ILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVL---TF 183
+LI TP ++ L+ ++ + LVIDE DL++ T
Sbjct: 145 KAIDDKMRERIAESLRASARVLIGTPRSVLGLMSMSEIR--NVTHLVIDEADLLINPETV 202
Query: 184 GYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKL 243
G + + E + S + M+ +++ I+ +K +L D E ++
Sbjct: 203 GVFASILSVIEMEDIHISCFSATMNEYVSEVIETVKSITKIRVVSKRLIDHEFVFGTSRK 262
Query: 244 IQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVL 289
I K L I G I+ TLIFV + G L ++L
Sbjct: 263 I----------KHLSLLQIIADG-IESPTLIFVKDEKTGEALSMLL 297
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 56.2 bits (134), Expect = 1e-07
Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 29/223 (13%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDE 89
I + G + P+ IQ AI L +I +A +G+GK + I ++ I KA Q
Sbjct: 92 IYAYGSEKPSAIQQRAI-LPCIRGYVVIVQAQSGTGKMATFSISILHQIELDVKATQ--- 147
Query: 90 GATLGVILVPTRELAQQVLEVVEKLIVFCSQEI--KCLNLSSGNVSGNLLKSLLTENPEI 147
+++K+++ + C G ++ L E P I
Sbjct: 148 -------------------ALIQKVVIALGDHMDASCHTCIGGTNVHAEVQKLQMEAPHI 188
Query: 148 LIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLM 207
++ TP + D+L+ + ++ +K V+D+ D +L+ G+++ + I + L + Q L
Sbjct: 189 IVGTPGHVFDMLNWRYLSPKYIKMFVLDKTDEMLSHGFKDQIYGIFQE--LNSNTQVVLP 246
Query: 208 SATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKV 250
SAT+ D+ + ++F R + + +E+ + + Q+Y+ +
Sbjct: 247 SATMPSDVLEVTKKFMREHIWILVKKEELTLE--GICQFYINM 287
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 54.7 bits (130), Expect = 4e-07
Identities = 43/174 (24%), Positives = 90/174 (51%), Gaps = 17/174 (9%)
Query: 50 LQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKAD--QNDEGATLGVILVPTRELAQQV 107
++E R ++ +A TG GKT A+LIP I+ L++++++ ++ + + +I+ T L Q+
Sbjct: 27 IREGRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMASTSALVDQL 86
Query: 108 LEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP------EILIATPAKLVDLLDA 161
E ++ ++C++ + + + L+ +P +I T KL ++
Sbjct: 87 FNRCELIL-----GLQCMD-NVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGKLKATIEC 140
Query: 162 QDVNIDRLKFLVIDEVD-LVLTFGYQEDLTKISERLPLR--KSLQTFLMSATLN 212
DV +D LK +++DE D ++ + D+ I ++L ++LQ+ SAT N
Sbjct: 141 GDVCLDNLKTIILDEADKMIDNCAFVPDINWILDQLKEENLENLQSCFFSATYN 194
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 54.3 bits (129), Expect = 5e-07
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 140 LLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLTFGYQEDLTKISER--LP 197
+L +L+ATP LVDL++ + +D K+LV+DE D +L G+ + I E+ +P
Sbjct: 234 VLEHGCHLLVATPGGLVDLMERGKIGLDFCKYLVLDEADRMLDMGFGPQIHLILEQDTMP 293
Query: 198 LRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVNKDQTKLIQYYVKVGEFDK-- 255
L+ + SAT ++IQ L + F L + V + Q V V E DK
Sbjct: 294 LKGIHHIMMFSATFPNEIQMLARDFLDEYIFLAVG--RVGSTSETITQEVVWVEEPDKRS 351
Query: 256 FLL 258
FLL
Sbjct: 352 FLL 354
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 54.3 bits (129), Expect = 5e-07
Identities = 33/87 (37%), Positives = 51/87 (57%), Gaps = 10/87 (11%)
Query: 30 IRSIGFKHPTLIQSSAIPLALQEKRDIIAKASTGSGKTLAYLIPVIQTILD------HKK 83
I++ G+ PT +Q +IP ALQ RD+++ A TGSGKT A+L+P++ IL H+
Sbjct: 378 IKTAGYDRPTPVQKYSIP-ALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRS 436
Query: 84 ADQN---DEGATLGVILVPTRELAQQV 107
+ + ++L PTREL+ QV
Sbjct: 437 VTSSGGRKKQYPSALVLSPTRELSLQV 463
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 53.9 bits (128), Expect = 7e-07
Identities = 43/190 (22%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 123 KCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVDLVLT 182
+C+N+ + ++ L E P I++ TP ++ D+L+ + ++ +K V+DE D +L+
Sbjct: 44 QCINMCAK------VQKLQMEAPHIIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLS 97
Query: 183 FGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPAILKLNDDEVN-KDQT 241
+++ + I + L + Q L+SAT+ D+ + ++F R P + + +E+ KD T
Sbjct: 98 HRFKDQICDIFQM--LNSNTQVVLLSATIPSDVLEVTKKFMRDPIRILVKKEELTLKDFT 155
Query: 242 KLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGIKSCILNS 301
+ G+ D+ V+ + + LI + + RG ++ + S ++N
Sbjct: 156 VSAMH----GDMDQKERDVVMREYRSGSSRVLITTDLLPRGIDVQQL-------SLVINY 204
Query: 302 ELPANSRQHI 311
+ P N +I
Sbjct: 205 DPPTNRENYI 214
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 53.1 bits (126), Expect = 1e-06
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 382 SRGVDFKNVACVLNFDLPTTAKSYVHRIGRTARAGKSGISISF 424
+RG+D NV V+N+DLP+ YVHRIGRT R G G++ SF
Sbjct: 173 ARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSF 215
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 52.4 bits (124), Expect = 2e-06
Identities = 43/174 (24%), Positives = 88/174 (49%), Gaps = 17/174 (9%)
Query: 50 LQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKAD--QNDEGATLGVILVPTRELAQQV 107
++E R ++ +A TG GKT A+LIP I+ L +++++ + + + +I+ T L Q+
Sbjct: 127 IREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPSPSILIMASTSALVDQL 186
Query: 108 LEVVEKLIVFCSQEIKCLNLSSGNVSGNLLKSLLTENP------EILIATPAKLVDLLDA 161
E ++ ++C++ + + + L+ +P +I T KL ++
Sbjct: 187 FNRCELIL-----GLQCMD-NVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGKLKATIEC 240
Query: 162 QDVNIDRLKFLVIDEVD-LVLTFGYQEDLTKISERLPLR--KSLQTFLMSATLN 212
DV +D LK +++DE D ++ + D+ I ++L ++LQ+ SAT N
Sbjct: 241 GDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKEENLENLQSCFFSATYN 294
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 50.1 bits (118), Expect = 1e-05
Identities = 43/173 (24%), Positives = 81/173 (45%), Gaps = 13/173 (7%)
Query: 49 ALQEKRDIIAKASTGSGKTLAYLIPVIQTILDHKKADQNDEGATLGVILV--PTRELAQQ 106
A++++R ++ A TG GKT A+LIP I+ L + N IL+ T L +Q
Sbjct: 125 AIRDRRGLLVDAPTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILILANTNSLVEQ 184
Query: 107 VLEVVEKLIVFCSQE----IKCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQ 162
+ E L+ E I+ + + S K + +I T KL ++ +
Sbjct: 185 LFNRCEVLLGLIDMEDIIPIRDIKIEKLVASYQFTK----DQCDIAFCTMGKLKASIEDK 240
Query: 163 DVNIDRLKFLVIDEVDLVLTFG-YQEDLTKISERL--PLRKSLQTFLMSATLN 212
+ +D LK +++DE D ++ + D+ + ++L + ++LQ+ SA+ N
Sbjct: 241 TILLDNLKMMILDESDKMIDIACFGNDIDWVLDQLQEDVLRNLQSCFFSASHN 293
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,976,981
Number of Sequences: 60738
Number of extensions: 1296767
Number of successful extensions: 5577
Number of sequences better than 1.0e-05: 234
Number of HSP's better than 0.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 4490
Number of HSP's gapped (non-prelim): 499
length of query: 594
length of database: 30,389,216
effective HSP length: 112
effective length of query: 482
effective length of database: 23,586,560
effective search space: 11368721920
effective search space used: 11368721920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)