ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1177 good A KOG1137 RNA processing and modification mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1177 421885 419594 -764
(764 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR277c [A] KOG1137 mRNA cleavage and polyadenylation factor II ... 1074 0.0
SPAC17G6.16c [A] KOG1137 mRNA cleavage and polyadenylation facto... 692 0.0
Hs7706427 [A] KOG1137 mRNA cleavage and polyadenylation factor I... 550 e-156
CE28423 [A] KOG1137 mRNA cleavage and polyadenylation factor II ... 528 e-149
At1g61010 [A] KOG1137 mRNA cleavage and polyadenylation factor I... 528 e-149
7300421 [A] KOG1137 mRNA cleavage and polyadenylation factor II ... 522 e-148
ECU10g0900 [A] KOG1137 mRNA cleavage and polyadenylation factor ... 450 e-126
ECU10g1350 [A] KOG1136 Predicted cleavage and polyadenylation sp... 281 3e-75
7301822 [A] KOG1136 Predicted cleavage and polyadenylation speci... 278 2e-74
CE23639 [A] KOG1136 Predicted cleavage and polyadenylation speci... 265 2e-70
At2g01730_1 [A] KOG1136 Predicted cleavage and polyadenylation s... 259 1e-68
Hs14149863 [A] KOG1136 Predicted cleavage and polyadenylation sp... 146 1e-34
At5g23880 [A] KOG1135 mRNA cleavage and polyadenylation factor I... 145 2e-34
Hs17477312 [A] KOG1135 mRNA cleavage and polyadenylation factor ... 137 8e-32
7301732 [A] KOG1135 mRNA cleavage and polyadenylation factor II ... 137 8e-32
CE09299 [A] KOG1135 mRNA cleavage and polyadenylation factor II ... 124 7e-28
SPBC1709.15c [A] KOG1135 mRNA cleavage and polyadenylation facto... 105 3e-22
ECU05g0390 [A] KOG1135 mRNA cleavage and polyadenylation factor ... 75 4e-13
Hs8922726 [A] KOG1138 Predicted cleavage and polyadenylation spe... 75 5e-13
7294185 [A] KOG1138 Predicted cleavage and polyadenylation speci... 65 3e-10
YLR115w [A] KOG1135 mRNA cleavage and polyadenylation factor II ... 56 2e-07
CE27371 [A] KOG1138 Predicted cleavage and polyadenylation speci... 55 4e-07
>YLR277c [A] KOG1137 mRNA cleavage and polyadenylation factor II complex
BRR5 (CPSF subunit)
Length = 779
Score = 1074 bits (2777), Expect = 0.0
Identities = 533/770 (69%), Positives = 638/770 (82%), Gaps = 20/770 (2%)
Query: 15 RFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLISHF 74
+FFSLGGSNEVGRSCHILQYKGKT+MLDAGIHPA+QGLASLP+YDEFDLS +D+LLISHF
Sbjct: 10 KFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHF 69
Query: 75 HLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDN-LYS 133
HLDHAASLPYVMQRTNF+GRVFMTHPTKAIYRWLL DFV+VTSIG S + D L+S
Sbjct: 70 HLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFS 129
Query: 134 DEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREV 193
DEDL +SFD+IET+DYHST++VNGIKFTAFHAGHVLGAAMFQIEIAG+RVLFTGDYSREV
Sbjct: 130 DEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREV 189
Query: 194 DRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALG 253
DRHLNSAEVPP SS+V+IVESTFGTATHEPR NRERKLTQLIH+ V +GGRVLLPVFALG
Sbjct: 190 DRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALG 249
Query: 254 RAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKDSQ 313
RAQEIMLILDEYW H +ELG GQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKF+DSQ
Sbjct: 250 RAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQ 309
Query: 314 TNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVTGYSV 373
TNPFIFKNISYL+NL++F+DFGPSVMLASPGMLQ+GLSRD+LE+WCPE+KNLVL+TGYS+
Sbjct: 310 TNPFIFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSI 369
Query: 374 EGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASNIILV 433
EGTMAK+++LEP+ IPS++NPEITIPRRCQV+EI+FAAHVDF+ENLEFIE I A NIILV
Sbjct: 370 EGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILV 429
Query: 434 HGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDIEFKDVKVARAVGKIIEDL- 492
HGE+NPMGRLKSALLSNF+SLK T+NEVHVFNPRNCV VD+EF+ VKVA+AVG I+ ++
Sbjct: 430 HGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIY 489
Query: 493 ---DEFITEEDALKNEKRXXXXXXXXXXXXXXXXXIVKEENEKIVSGILVSDEKNFDLSL 549
+ I EE A K E +E + +VSGILVSD+KNF+L
Sbjct: 490 KEENVEIKEEIAAKIEPIKEENEDNLDSQAEKGLVDEEEHKDIVVSGILVSDDKNFELDF 549
Query: 550 VSLSDLREHYQQLSTTVLTERQTVHLDCKSELVYWHICQMFGDVDVYIDEENVSLK--NI 607
+SLSDLREH+ LSTT+L ERQ+V ++CK EL+YWHI QMFG+ +V D++ V+ + +
Sbjct: 550 LSLSDLREHHPDLSTTILRERQSVRVNCKKELIYWHILQMFGEAEVLQDDDRVTNQEPKV 609
Query: 608 NPEFKTRKIKKGELEIKIMGDVILNIVDNVATLQWTQNVISDSVADSVMAILLSVESAPA 667
E K G+L ++IMGD+ L IV+ +A ++WTQ++++D+VADS++AIL++V+SAPA
Sbjct: 610 KEESKDNLTNTGKLILQIMGDIKLTIVNTLAVVEWTQDLMNDTVADSIIAILMNVDSAPA 669
Query: 668 SIKMSSKSC---------XXXXXXXXXXXKIKNISRVFKEQFGDTFTLFLNEED----SK 714
S+K+SS SC ++K ISR+FKEQFGD FTLFLN+++ +
Sbjct: 670 SVKLSSHSCDDHDHNNVQSNAQGKIDEVERVKQISRLFKEQFGDCFTLFLNKDEYASNKE 729
Query: 715 EEIKGTINLGKTTACINFSKMVVEECNSNPLKGRIESLLKIGSDLVAPLC 764
E I G + +GK+TA I+F+ M + ECNSNPLKGR+ESLL IG +LV PLC
Sbjct: 730 ETITGVVTIGKSTAKIDFNNMKILECNSNPLKGRVESLLNIGGNLVTPLC 779
>SPAC17G6.16c [A] KOG1137 mRNA cleavage and polyadenylation factor II complex
BRR5 (CPSF subunit)
Length = 775
Score = 692 bits (1787), Expect = 0.0
Identities = 369/760 (48%), Positives = 503/760 (65%), Gaps = 90/760 (11%)
Query: 11 KDHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLL 70
+D L F +LG NEVGRSCH++QYKGKT+MLDAG+HPA+ GL++LP++DEFDLST+D+LL
Sbjct: 34 QDLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLSTVDVLL 93
Query: 71 ISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDN 130
ISHFHLDH ASLPYVMQ+TNFRGRVFMTHPTKA+ +WLL+D+VKV+++G D
Sbjct: 94 ISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVG-------MEDQ 146
Query: 131 LYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYS 190
LY ++DL +FDRIE +DYHST+EV GIKFT +HAGHVLGA M+ +E+AGV +LFTGDYS
Sbjct: 147 LYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYS 206
Query: 191 REVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVF 250
RE DRHL+ AEVPP+ DV+I EST+GTA+H+PR +E +L +IH+ + GGRVL+PVF
Sbjct: 207 REEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVF 266
Query: 251 ALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFK 310
ALGRAQE++LILDEYW NH L VPI+YAS+LA+KCM++FQTYVNMMND+IRK F
Sbjct: 267 ALGRAQELLLILDEYWNNH---LDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIF- 322
Query: 311 DSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVTG 370
++ NPFIF+ + L+NL++F+D GPSV+LASPGMLQNG+SR +LE+W P+ +N +L+TG
Sbjct: 323 -AERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTG 381
Query: 371 YSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASNI 430
YSVEGTMAK + EP I S+ + IPRR V+E++FAAHVD+ +N EFI+L+ A +I
Sbjct: 382 YSVEGTMAKQITNEPIEIVSLSGQK--IPRRMAVEELSFAAHVDYLQNSEFIDLVNADHI 439
Query: 431 ILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDIEFKDVKVARAVGKIIE 490
ILVHGE MGRLKSAL S F + K +V V+ PRNCV + + FK ++ RA+GK+
Sbjct: 440 ILVHGEQTNMGRLKSALASKFHNRK---VDVKVYTPRNCVPLYLPFKGERLVRALGKV-- 494
Query: 491 DLDEFITEEDALKNEKRXXXXXXXXXXXXXXXXXIVKEENEKIVSGILVSDEKNFDLSLV 550
+ K + I+SGIL+ + N+ L+
Sbjct: 495 ---------------------------------AVHKPKEGDIMSGILIQKDANY--KLM 519
Query: 551 SLSDLREHYQQLSTTVLTERQTVHLDCKSELVYWHICQMFGDVDVYIDEENVSLKNINPE 610
S DLR+ + L+TTVLT++Q + EL +H+ QMFG V
Sbjct: 520 SAEDLRD-FSDLTTTVLTQKQVIPFFSSMELANFHLKQMFGYV----------------- 561
Query: 611 FKTRKIKKGELEIKIMGDVILNIV-DNVATLQWTQNVISDSVADSVMAILLSVESAPASI 669
K K K G+ + +M + L ++ ++ L+W N+++D++ADSV+ ILL +ES+PAS+
Sbjct: 562 -KQSKTKAGQPQYTVMDAITLTLIQEHKLALEWVGNIMNDTIADSVITILLGIESSPASV 620
Query: 670 KMSSKSCXXXXX-------XXXXXXKIKNISRVFKEQFGDTFTLFLNEEDSKEEIKGTIN 722
K++S C +IK + QFG++ T K E I
Sbjct: 621 KLTSHKCNHLHSHLDKPPKVSKEEDRIKKLMMFLDNQFGESMT--------KTEKGVEIK 672
Query: 723 LGKTTACINFSKMVVEECNSNPLKGRIESLLKIGSDLVAP 762
K A I+FS M V EC++ L+ R+ +L + + P
Sbjct: 673 FEKYEASIDFSTMKV-ECSNEALRSRVVHVLSRAINTILP 711
>Hs7706427 [A] KOG1137 mRNA cleavage and polyadenylation factor II complex
BRR5 (CPSF subunit)
Length = 684
Score = 550 bits (1417), Expect = e-156
Identities = 295/657 (44%), Positives = 423/657 (63%), Gaps = 73/657 (11%)
Query: 10 DKDHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLL 69
+ D L LG EVGRSC IL++KG+ +MLD GIHP +G+ +LPY D D + IDLL
Sbjct: 8 ESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLL 67
Query: 70 LISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSND 129
LISHFHLDH +LP+ +Q+T+F+GR FMTH TKAIYRWLL+D+VKV++I S++D
Sbjct: 68 LISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-------SADD 120
Query: 130 NLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDY 189
LY++ DL ES D+IETI++H EV GIKF +HAGHVLGAAMF IEIAGV++L+TGD+
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
Query: 190 SREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPV 249
SR+ DRHL +AE+P D++I+EST+GT HE R+ RE + +H +V++GGR L+PV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
Query: 250 FALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKF 309
FALGRAQE++LILDEYWQNH E +PI+YAS+LAKKCM+V+QTYVN MND IRK+
Sbjct: 241 FALGRAQELLLILDEYWQNHPE---LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQI 297
Query: 310 KDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVT 369
+ NPF+FK+IS LK++D F+D GPSV++ASPGM+Q+GLSR++ E WC +++N V++
Sbjct: 298 --NINNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 355
Query: 370 GYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASN 429
GY VEGT+AK+++ EPE I ++ + +P + VD I+F+AH D+++ EFI + +
Sbjct: 356 GYCVEGTLAKHIMSEPEEITTMSGQK--LPLKMSVDYISFSAHTDYQQTSEFIRALKPPH 413
Query: 430 IILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDIEFKDVKVARAVGKII 489
+ILVHGE N M RLK+AL+ + + EVH NPRN V + F+ K+A+ +G
Sbjct: 414 VILVHGEQNEMARLKAALIREYEDNDEVHIEVH--NPRNTEAVTLNFRGEKLAKVMG--- 468
Query: 490 EDLDEFITEEDALKNEKRXXXXXXXXXXXXXXXXXIVKEENEKIVSGILVSDEKNFDLSL 549
F+ ++ K E + VSGILV ++NF+ +
Sbjct: 469 -----FLADK---------------------------KPEQGQRVSGILV--KRNFNYHI 494
Query: 550 VSLSDLREHYQQLSTTVLTERQTVHLDCKSELVYWHICQMFGDVDVYIDEENVSLKNINP 609
+S DL +Y L+ + + + Q + L+ + + ++ GDV+ +E +L
Sbjct: 495 LSPCDL-SNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEKPAL----- 548
Query: 610 EFKTRKIKKGELEIKIMGDVILNIVDNVATLQWTQNVISDSVADSVMAILLSVESAP 666
K+ K I+ G V+ L+W N +D AD+V ++L V+S P
Sbjct: 549 -----KVFKNITVIQEPGMVV---------LEWLANPSNDMYADTVTTVILEVQSNP 591
>CE28423 [A] KOG1137 mRNA cleavage and polyadenylation factor II complex
BRR5 (CPSF subunit)
Length = 722
Score = 528 bits (1361), Expect = e-149
Identities = 288/685 (42%), Positives = 425/685 (62%), Gaps = 80/685 (11%)
Query: 4 LENEVPDKDHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDL 63
+E E + D L F LG EVGRSCH+L+YKGK +MLD G+HP G+ +LP+ D ++
Sbjct: 1 MEEEGDNSDSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEI 60
Query: 64 STIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPG 123
IDLLLI+HFHLDH +LP+++Q+T F+G+ FMTH TKAIYR LL D+V+++ G G
Sbjct: 61 ENIDLLLITHFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYG---G 117
Query: 124 QDSSNDNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRV 183
D + LY+++DL +S +IETID+ EVNGI+F + AGHVLGA F IEIAGVRV
Sbjct: 118 PD--RNQLYTEDDLEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRV 175
Query: 184 LFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGG 243
L+TGD+S DRHL +AE+PP + V+I EST+GT THE R RE++ TQ++H +V++GG
Sbjct: 176 LYTGDFSCLEDRHLCAAEIPPITPQVLITESTYGTQTHEDRAVREKRFTQMVHDIVTRGG 235
Query: 244 RVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMND 303
R L+P FA+G AQE+MLILDEYW++H+E +P++YAS+LAKKCMSV+QT+VN MN
Sbjct: 236 RCLIPAFAIGPAQELMLILDEYWESHQE---LHDIPVYYASSLAKKCMSVYQTFVNGMNS 292
Query: 304 DIRKKFKDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEK 363
I+K+ + NPFIFK++S L+ +D+FED GP V+LA+PGMLQ+G SR++ E WCP+ K
Sbjct: 293 RIQKQI--AVKNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFESWCPDTK 350
Query: 364 NLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIE 423
N ++ GY VEGT+AK++L EPE I S+ + +P R QV ++F+AH D+ + F++
Sbjct: 351 NGCIIAGYCVEGTLAKHILSEPEEIVSLSGEK--LPMRMQVGYVSFSAHTDYHQTSNFVK 408
Query: 424 LIGASNIILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDIEFKDVKVAR 483
+ +++LVHGE + M RLKS + F +D + V NPRN + ++F+ K A+
Sbjct: 409 ALKPPHLVLVHGELHEMSRLKSGIERQF---QDDNIPIEVHNPRNTERLQLQFRGEKTAK 465
Query: 484 AVGKIIEDLDEFITEEDALKNEKRXXXXXXXXXXXXXXXXXIVKEENEKIVSGILVSDEK 543
+GK+ + + EN + +SG+LV +
Sbjct: 466 VIGKLAQRV-----------------------------------PENNETISGVLV--KN 488
Query: 544 NFDLSLVSLSDLREHYQQLSTTVLTERQTVHLDCKSELVYWHICQMFGDVDVYIDEENVS 603
NF S++ +L Y L + L +R +VH +L+ +++ Q+ D + +N+
Sbjct: 489 NFSYSIMVPEELGS-YTSLRISSLEQRMSVHYSGSLKLLIFNLQQLNDDACLI---QNIK 544
Query: 604 LKNINP---------------EF-KTRKI--KKGELEIKIMGDVILNIVDNVATLQWTQN 645
LK I+ EF K RKI K G++ + + G+ D+V ++W N
Sbjct: 545 LKEISKKGSVTQAITVFQVSMEFEKPRKILLKIGKVNVTVYGN------DHVVVVRWDSN 598
Query: 646 VISDSVADSVMAILLSVESAPASIK 670
+ D ADSV+A +L ++ P K
Sbjct: 599 PVYDMYADSVVAAILHAQANPVPDK 623
>At1g61010 [A] KOG1137 mRNA cleavage and polyadenylation factor II complex
BRR5 (CPSF subunit)
Length = 693
Score = 528 bits (1359), Expect = e-149
Identities = 285/665 (42%), Positives = 415/665 (61%), Gaps = 73/665 (10%)
Query: 10 DKDHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLL 69
D D L LG +EVGRSC + ++GK ++ D GIHPA+ G+A+LPY+DE D S+ID+L
Sbjct: 18 DGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPSSIDVL 77
Query: 70 LISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSND 129
LI+HFH+DHAASLPY +++T F GRVFMTH TKAIY+ LL D+VKV+ + S D
Sbjct: 78 LITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV-------SVED 130
Query: 130 NLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDY 189
L+ ++D+ +S D+IE ID+H T+EVNGIKF + AGHVLGAAMF ++IAGVR+L+TGDY
Sbjct: 131 MLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDY 190
Query: 190 SREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPV 249
SRE DRHL +AE+P S D+ I+EST G H+ R RE++ T +IH+ V++GGRVL+P
Sbjct: 191 SREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPA 250
Query: 250 FALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKF 309
FALGRAQE++LILDEYW NH +L N +PI+YAS LAKKCM+V+QTY+ MND IR +F
Sbjct: 251 FALGRAQELLLILDEYWANH-PDLHN--IPIYYASPLAKKCMAVYQTYILSMNDRIRNQF 307
Query: 310 KDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVT 369
+S NPF+FK+IS L ++D+F D GPSV++A+PG LQ+GLSR + + WC ++KN ++
Sbjct: 308 ANS--NPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIP 365
Query: 370 GYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASN 429
GY VEGT+AK ++ EP+ + ++ +T P QV I+F+AH D+ + F++ + N
Sbjct: 366 GYMVEGTLAKTIINEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 423
Query: 430 IILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDIEFKDVKVARAVGKII 489
IILVHGE+N M RLK LL+ F + + P+NC V++ F K+A+ +G++
Sbjct: 424 IILVHGEANEMMRLKQKLLTEF-----PDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLA 478
Query: 490 EDLDEFITEEDALKNEKRXXXXXXXXXXXXXXXXXIVKEENEKIVSGILVSDEKNFDLSL 549
E + VSGILV +K F +
Sbjct: 479 EKTPDV-----------------------------------GDTVSGILV--KKGFTYQI 501
Query: 550 VSLSDLREHYQQLSTTVLTERQTVHLDCKSELVYWHICQMFGDVDVYIDEENVSLKNINP 609
++ +L + QLST +T+R T+ ++ + ++F V+ DEE+ L +
Sbjct: 502 MAPDELHV-FSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEES-GLPALKV 559
Query: 610 EFKTRKIKKGELEIKIMGDVILNIVDNVATLQWTQNVISDSVADSVMAILLSVESAPASI 669
+ ++ E I +LQW+ + ISD V+DS++A++L++ I
Sbjct: 560 HERVTVKQESEKHI---------------SLQWSSDPISDMVSDSIVALILNISREVPKI 604
Query: 670 KMSSK 674
M +
Sbjct: 605 VMEEE 609
>7300421 [A] KOG1137 mRNA cleavage and polyadenylation factor II complex
BRR5 (CPSF subunit)
Length = 705
Score = 522 bits (1345), Expect = e-148
Identities = 279/678 (41%), Positives = 424/678 (62%), Gaps = 78/678 (11%)
Query: 1 MTQLENE--VPDK--DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLP 56
MTQ + +PD+ D L+ LG EVGRSC +L++KGK +MLD GIHP G+ +LP
Sbjct: 1 MTQATGDARMPDEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALP 60
Query: 57 YYDEFDLSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVT 116
Y D + IDLL ISHFHLDH +LP+ + +T+F+GR FMTH TKAIYRW+L+D++K++
Sbjct: 61 YVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKIS 120
Query: 117 SIGDSPGQDSSNDNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQI 176
+I S+ LY++ DL S ++IETI++H +V G++F A+ AGHVLGAAMF I
Sbjct: 121 NI-------STEQMLYTEADLEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMI 173
Query: 177 EIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIH 236
EIAG+++L+TGD+SR+ DRHL +AEVPP DV+I EST+GT HE R++RE + T L+
Sbjct: 174 EIAGIKILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQ 233
Query: 237 TVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQT 296
+V +GGR L+PVFALGRAQE++LILDE+W + + ++PI+YAS+LAKKCM+V+QT
Sbjct: 234 KIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPD---LHEIPIYYASSLAKKCMAVYQT 290
Query: 297 YVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILE 356
Y+N MND IR++ + NPF+F++IS LK +D FED GP V++ASPGM+Q+GLSR++ E
Sbjct: 291 YINAMNDRIRRQI--AVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFE 348
Query: 357 KWCPEEKNLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFR 416
WC + KN V++ GY VEGT+AK +L EPE I ++ + +P VD I+F+AH D++
Sbjct: 349 SWCTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQK--LPLNMSVDYISFSAHTDYQ 406
Query: 417 ENLEFIELIGASNIILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDIEF 476
+ EFI L+ ++++LVHGE N M RLK AL + + D ++ +NPRN VD+ F
Sbjct: 407 QTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEA--DASTDIKFYNPRNTHAVDLYF 464
Query: 477 KDVKVARAVGKIIEDLDEFITEEDALKNEKRXXXXXXXXXXXXXXXXXIVKEENEKIVSG 536
+ K A+ +G + A KN E K+ SG
Sbjct: 465 RGEKTAKVMGSL------------AAKN----------------------SEVGSKL-SG 489
Query: 537 ILVSDEKNFDLSLVSLSDLREHYQQLSTTVLTERQTVHLDCKSELVYWHICQMFGDVDVY 596
+LV +++F L++ SDL + Y +S +V+T+RQ++ W +++
Sbjct: 490 VLV--KRDFKYHLLAPSDLGK-YTDMSMSVVTQRQSIP---------WG--SSLSTLELL 535
Query: 597 IDEENVSLKNINPEFKTRKIKKGELEIKIMGDVILNIVDNVATLQWTQNVISDSVADSVM 656
+D ++ + E ++++ G + L + + ++W ++D AD+V+
Sbjct: 536 LDRIGAGCV---------EVLEAERKLRVFGCIELTVEQKIIVMEWQATHVNDVYADAVL 586
Query: 657 AILLSVESAPASIKMSSK 674
A ++ E ++K ++K
Sbjct: 587 ACIMQSELGGTNLKGATK 604
>ECU10g0900 [A] KOG1137 mRNA cleavage and polyadenylation factor II complex
BRR5 (CPSF subunit)
Length = 730
Score = 450 bits (1158), Expect = e-126
Identities = 218/436 (50%), Positives = 308/436 (70%), Gaps = 14/436 (3%)
Query: 12 DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLI 71
+ ++ LG NEVGRSC I++ G+T+MLD G+HPA+ G+ASLP+ D DLS ID + I
Sbjct: 92 EKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFI 151
Query: 72 SHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNL 131
+HFHLDHAA+LP++ ++T+FRG+V+MTHPTKAI +WLLND++++ + SS+ +
Sbjct: 152 THFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINA-------SSDTDF 204
Query: 132 YSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSR 191
Y++ DL + +DRI IDYH + V GIK A +AGHVLGAAMF +EI ++L+TGD+SR
Sbjct: 205 YTETDLVKCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSR 264
Query: 192 EVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFA 251
E DRHL +AE P D +I EST+G H PR RE + T ++ VV +GGR LLPVFA
Sbjct: 265 EEDRHLKAAESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFA 324
Query: 252 LGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKD 311
LGRAQE++LIL+E+W ++ ++PI+YAS LAK+CM V+QTY+ MMN+ I+K
Sbjct: 325 LGRAQELLLILEEHWGSN---TSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQK--LS 379
Query: 312 SQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVTGY 371
NPF FK + LK +D F+D GP V++ASPGMLQ+GLSRD+ E+WC + KN V++ GY
Sbjct: 380 LVRNPFAFKYVKNLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGY 439
Query: 372 SVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASNII 431
V+GT+AK +L EP+ I +++ ++ + V+ I+F+AHVDF +N +FIE +
Sbjct: 440 CVDGTLAKEILSEPKEIEAMNGKKLRL--NMSVEYISFSAHVDFTQNSQFIEECQPKYLF 497
Query: 432 LVHGESNPMGRLKSAL 447
VHGE N M RLK+ +
Sbjct: 498 FVHGEMNEMQRLKNVI 513
>ECU10g1350 [A] KOG1136 Predicted cleavage and polyadenylation specificity
factor (CPSF subunit)
Length = 496
Score = 281 bits (719), Expect = 3e-75
Identities = 160/464 (34%), Positives = 258/464 (55%), Gaps = 37/464 (7%)
Query: 19 LGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYD------EFDLSTIDLLLIS 72
LG +VGRSC ++ KG+T+M D G+H P + FD ID ++IS
Sbjct: 6 LGAGQDVGRSCILVSIKGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFD-KVIDCIIIS 64
Query: 73 HFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLY 132
HFHLDH +LPY + + G ++MT PTK + LL+DF K+ + D+++
Sbjct: 65 HFHLDHCGALPYFTEVCGYGGPIYMTLPTKEVCPVLLDDFRKIVA--------GKGDSIF 116
Query: 133 SDEDLAESFDRIETIDYHSTMEVN-GIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSR 191
+ +D++ ++ TI + T + + T ++AGHVLGAAMF + + V++TGDYS
Sbjct: 117 TYQDISNCMKKVVTISMNETYKHDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYST 176
Query: 192 EVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFA 251
D+HL A + D++I EST+G+ T + R+ +ER+ + + V++GGRVL+P+FA
Sbjct: 177 TPDKHLGPASIKCIRPDLLITESTYGSITRDCRKVKEREFLKAVSDCVARGGRVLIPIFA 236
Query: 252 LGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKD 311
LGRAQE+ L+LD YW E + P++++S L +K +++ +++ N+ +RKK
Sbjct: 237 LGRAQELCLLLDGYW-----ERTGLKTPVYFSSGLTEKANEIYKKFISYTNETVRKKI-- 289
Query: 312 SQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVTGY 371
+ N F +K+I + E GP V+ ASPGML +G+S I ++WC +EKNLV++ GY
Sbjct: 290 FERNMFEYKHIKPFQR-HYMESKGPMVLFASPGMLHSGMSLKIFKEWCEDEKNLVIIPGY 348
Query: 372 SVEGTMAKYLLLEPEAIPSV-HNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASNI 430
V GT+ + +L + + + EI R +V + F+AH D L +E N+
Sbjct: 349 CVRGTIGEKVLNGATKLEILGESREI----RLEVKNLAFSAHADAPGILNVVEQCSPRNV 404
Query: 431 ILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDI 474
+LVHGE + M LK ++ F + F P N ++I
Sbjct: 405 MLVHGEKSRMKVLKRSIEERFG--------IPTFLPPNGTLINI 440
>7301822 [A] KOG1136 Predicted cleavage and polyadenylation specificity
factor (CPSF subunit)
Length = 597
Score = 278 bits (711), Expect = 2e-74
Identities = 157/447 (35%), Positives = 252/447 (56%), Gaps = 26/447 (5%)
Query: 14 LRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFD-----LSTIDL 68
++ LG +VGRSC +L GK +MLD G+H + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 69 LLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSN 128
++ISHFHLDH +LPY+ + + G ++MTHPTKAI LL D KV +
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAV------ERKGE 117
Query: 129 DNLYSDEDLAESFDRIETIDYHSTMEVN-GIKFTAFHAGHVLGAAMFQIEIAGVRVLFTG 187
N ++ + + + ++ + H +M V+ ++ A++AGHVLGAAMF I++ V++TG
Sbjct: 118 SNFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTG 177
Query: 188 DYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLL 247
DY+ DRHL +A + D++I EST+ T + ++ RER + +H V+KGG+VL+
Sbjct: 178 DYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLI 237
Query: 248 PVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRK 307
PVFALGRAQE+ ++L+ YW E N + PI++A L +K + ++ ++ N IRK
Sbjct: 238 PVFALGRAQELCILLETYW-----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRK 292
Query: 308 KFKDSQTNPFIFKNISYLKNLDE--FEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNL 365
F N F FK+I K D+ ++ G V+ A+PGML GLS I +KW P E N+
Sbjct: 293 TF--VHRNMFDFKHI---KPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNM 347
Query: 366 VLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELI 425
V++ GY V+GT+ +L + + + + + + V+ ++F+AH D + ++ I+
Sbjct: 348 VIMPGYCVQGTVGNKILGGAKKVEFENRQVVEV--KMAVEYMSFSAHADAKGIMQLIQNC 405
Query: 426 GASNIILVHGESNPMGRLKSALLSNFS 452
N++LVHGE+ M L+S + F+
Sbjct: 406 EPKNVMLVHGEAGKMKFLRSKIKDEFN 432
>CE23639 [A] KOG1136 Predicted cleavage and polyadenylation specificity
factor (CPSF subunit)
Length = 474
Score = 265 bits (677), Expect = 2e-70
Identities = 160/470 (34%), Positives = 259/470 (55%), Gaps = 35/470 (7%)
Query: 8 VPDK-DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFD---- 62
+PDK ++ LG +VGRSC ++ GK +M+D G+H +Q P +
Sbjct: 1 MPDKIPEIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGR 60
Query: 63 -LSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDS 121
+D ++ISHFHLDH SLP++ + + G ++MT+PTKAI LL D+ KV D
Sbjct: 61 LTDYLDCVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQC--DI 118
Query: 122 PGQDSSNDNLYSDEDLAESFDRIETIDYHSTMEV-NGIKFTAFHAGHVLGAAMFQIEIAG 180
G+ N ++ +D+ ++ H + V N + AF+AGHVLGAAMF+I +
Sbjct: 119 KGET----NFFTSDDIKNCMKKVVGCALHEIIHVDNELSIRAFYAGHVLGAAMFEIRLGD 174
Query: 181 VRVLFTGDYSREVDRHLNSAEV-PPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVV 239
VL+TGDY+ DRHL +A V P V+I EST+ T + ++ RER + +H V
Sbjct: 175 HSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHECV 234
Query: 240 SKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVN 299
KGG+V++PVFALGRAQE+ ++L+ YW+ VPI+++ LA++ ++ +++
Sbjct: 235 MKGGKVIIPVFALGRAQELCILLESYWERMAL-----NVPIYFSQGLAERANQYYRLFIS 289
Query: 300 MMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWC 359
N++I+K F + N F FK+I ++ E + GP V+ ++PGML G S + +KWC
Sbjct: 290 WTNENIKKTF--VERNMFEFKHIKPMEKGCE-DQPGPQVLFSTPGMLHGGQSLKVFKKWC 346
Query: 360 PEEKNLVLVTGYSVEGTM-AKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFREN 418
+ N++++ GY V GT+ A+ + E + EI R V+ ++F+AH D +
Sbjct: 347 SDPLNMIIMPGYCVAGTVGARVINGEKKIEIDQKMHEI----RLGVEYMSFSAHADAKGI 402
Query: 419 LEFIELIGASNIILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRN 468
++ I +++ VHGE++ M LK + + E +V V P N
Sbjct: 403 MQLIRQCEPQHVMFVHGEASKMEFLKGKV--------EKEYKVPVHMPAN 444
>At2g01730_1 [A] KOG1136 Predicted cleavage and polyadenylation specificity
factor (CPSF subunit)
Length = 579
Score = 259 bits (662), Expect = 1e-68
Identities = 143/441 (32%), Positives = 247/441 (55%), Gaps = 29/441 (6%)
Query: 19 LGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYD------EFDLSTIDLLLIS 72
LG E+G+SC ++ GK +M D G+H P + +FD + I ++I+
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFD-NAISCIIIT 66
Query: 73 HFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLY 132
HFH+DH +LPY + + G ++M++PTKA+ +L D+ +V + D G++ L+
Sbjct: 67 HFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRV--MVDRRGEEE----LF 120
Query: 133 SDEDLAESFDRIETIDYHSTMEVN-GIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSR 191
+ +A ++ ID T++V+ ++ A++AGHVLGA M ++ +++TGDY+
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180
Query: 192 EVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFA 251
DRHL +A++ D++I EST+ T + RER+ Q +H V+ GG+ L+P FA
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFA 240
Query: 252 LGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKD 311
LGRAQE+ ++LD+YW E N +VPI+++S L + ++ ++ + ++++ K
Sbjct: 241 LGRAQELCMLLDDYW-----ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKE--KH 293
Query: 312 SQTNPFIFKNISYLKNLDE--FEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVT 369
+ NPF FKN+ K+ D GP V+ A+PGML G S ++ + W P NLV +
Sbjct: 294 NTHNPFDFKNV---KDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALP 350
Query: 370 GYSVEGTMAKYLLL-EPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGAS 428
GYSV GT+ L+ +P + + ++ + RC+V ++ F+ H D + ++ + +
Sbjct: 351 GYSVAGTVGHKLMAGKPTTVDLYNGTKVDV--RCKVHQVAFSPHTDAKGIMDLTKFLSPK 408
Query: 429 NIILVHGESNPMGRLKSALLS 449
N++LVHGE M LK + S
Sbjct: 409 NVVLVHGEKPSMMILKEKITS 429
>Hs14149863 [A] KOG1136 Predicted cleavage and polyadenylation specificity
factor (CPSF subunit)
Length = 278
Score = 146 bits (368), Expect = 1e-34
Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 32/249 (12%)
Query: 14 LRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLST-----IDL 68
+R LG +VGRSC ++ GK +MLD G+H P + + +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 69 LLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSN 128
++ISHFHLDH +LPY + + G ++MTHPT+AI LL D+ K+ D G+
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAV--DKKGEA--- 118
Query: 129 DNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGD 188
N ++ + + + ++ + H T+ QI++ V++TGD
Sbjct: 119 -NFFTSQMIKDCMKKVVAVHLHQTV---------------------QIKVGSESVVYTGD 156
Query: 189 YSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLP 248
Y+ DRHL +A + +++I EST+ T + ++ RER + +H V +GG+VL+P
Sbjct: 157 YNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 216
Query: 249 VFALGRAQE 257
VFALGRAQE
Sbjct: 217 VFALGRAQE 225
>At5g23880 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 739
Score = 145 bits (367), Expect = 2e-34
Identities = 97/374 (25%), Positives = 183/374 (47%), Gaps = 26/374 (6%)
Query: 64 STIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLND-FVKVTSIGDSP 122
STID +L+SH H +LPY M++ V+ T P + + D F+ + D
Sbjct: 53 STIDAVLLSHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDF- 111
Query: 123 GQDSSNDNLYSDEDLAESFDRIETI----DYHSTMEVNGIKFTAFHAGHVLGAAMFQIEI 178
+L++ +D+ +F + + +YH + + GI AGH+LG ++++I
Sbjct: 112 -------DLFTLDDIDSAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITK 164
Query: 179 AGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGT--ATHEPRQNRERKLTQLIH 236
G V++ DY+ +RHLN + +++ + RQ R+++ I
Sbjct: 165 DGEDVIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTIS 224
Query: 237 TVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQT 296
+ GG VLLPV GR E++LIL+++W PI++ + ++ + ++
Sbjct: 225 KHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR-----GFSFPIYFLTYVSSSTIDYVKS 279
Query: 297 YVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDF--GPSVMLASPGMLQNGLSRDI 354
++ M+D I K F+ S+ N F+ ++++ L N + ++ GP V+LAS L+ G +R+I
Sbjct: 280 FLEWMSDSISKSFETSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREI 339
Query: 355 LEKWCPEEKNLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVD 414
+W + +NLVL T GT+A+ L ++ P ++T+ +R + A+ +
Sbjct: 340 FVEWANDPRNLVLFTETGQFGTLARML----QSAPPPKFVKVTMSKRVPLAGEELIAYEE 395
Query: 415 FRENLEFIELIGAS 428
+ L+ E + AS
Sbjct: 396 EQNRLKREEALRAS 409
>Hs17477312 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 782
Score = 137 bits (344), Expect = 8e-32
Identities = 94/382 (24%), Positives = 189/382 (48%), Gaps = 24/382 (6%)
Query: 14 LRFFSLGGSNEVGRSCHILQYKGKTLMLDAGI--HPAHQGLASLPYYDEFDLSTIDLLLI 71
++ +L G E C++LQ +LD G H + + SL + + ID +L+
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKH----VHQIDAVLL 60
Query: 72 SHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNL 131
SH H +LPY + + ++ T P + + + D + ++ + L
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSR-------HNTEDFTL 113
Query: 132 YSDEDLAESFDRIETIDYHSTMEV----NGIKFTAFHAGHVLGAAMFQIEIAGVR-VLFT 186
++ +D+ +FD+I+ + + + + +G+ T AGH++G +++I G +++
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 187 GDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPR--QNRERKLTQLIHTVVSKGGR 244
D++ + + HLN + S +++ +F +PR Q E+ LT ++ T+ G
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGN- 232
Query: 245 VLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDD 304
VL+ V GR E+ +LD+ W+ ++ G G + +N++ + ++ V M+D
Sbjct: 233 VLIAVDTAGRVLELAQLLDQIWRT--KDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDK 290
Query: 305 IRKKFKDSQTNPFIFKNISYLKNLDEFEDF-GPSVMLASPGMLQNGLSRDILEKWCPEEK 363
+ + F+D + NPF F+++S L + P V+LAS L+ G SRD+ +WC + K
Sbjct: 291 LMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPK 350
Query: 364 NLVLVTGYSVEGTMAKYLLLEP 385
N +++T + GT+A++L+ P
Sbjct: 351 NSIILTYRTTPGTLARFLIDNP 372
>7301732 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 756
Score = 137 bits (344), Expect = 8e-32
Identities = 92/378 (24%), Positives = 187/378 (49%), Gaps = 21/378 (5%)
Query: 14 LRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLISH 73
++ ++ G+ + C+ILQ ++LD G A+ + + T+D +L+SH
Sbjct: 5 IKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFD--ANFIKELKRQVHTLDAVLLSH 62
Query: 74 FHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLND-FVKVTSIGDSPGQDSSNDNLY 132
H +LPY++ + ++ T P + + + D ++ ++GD +L+
Sbjct: 63 PDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDF--------DLF 114
Query: 133 SDEDLAESFDRIETIDYHSTMEVN----GIKFTAFHAGHVLGAAMFQIEIAGVR-VLFTG 187
S +D+ +F++I + Y+ T+ + GI T +AGH++G +++I G +++
Sbjct: 115 SLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYAT 174
Query: 188 DYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQN-RERKLTQLIHTVVSKGGRVL 246
D++ + +RHL+ E+ +++ + + R+ R+ KL I V G VL
Sbjct: 175 DFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVL 234
Query: 247 LPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIR 306
+ V GR E+ +LD+ W+N +E G + +N++ + ++ + M+D +
Sbjct: 235 IAVDTAGRVLELAHMLDQLWKN--KESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLT 292
Query: 307 KKFKDSQTNPFIFKNISYLKNLDEFEDF--GPSVMLASPGMLQNGLSRDILEKWCPEEKN 364
K F+ ++ NPF FK+I +L + GP V+LAS L++G +RD+ +W N
Sbjct: 293 KAFEGARNNPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANN 352
Query: 365 LVLVTGYSVEGTMAKYLL 382
+++T + GT+A L+
Sbjct: 353 SIILTTRTSPGTLAMELV 370
>CE09299 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 843
Score = 124 bits (310), Expect = 7e-28
Identities = 93/379 (24%), Positives = 183/379 (47%), Gaps = 26/379 (6%)
Query: 14 LRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFD--LSTIDLLLI 71
L+ FS G+ + G C++LQ G ++LD G L Y++E + I +LI
Sbjct: 7 LKVFS--GAKDEGPLCYLLQVDGDYILLDCGWDERF----GLQYFEELKPFIPKISAVLI 60
Query: 72 SHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNL 131
SH H LPY++ + V+ T P + + + D V D
Sbjct: 61 SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVY-------SHLDVEEFEH 113
Query: 132 YSDEDLAESFDRIETIDYHSTMEV---NGIKFTAFHAGHVLGAAMFQI-EIAGVRVLFTG 187
Y+ +D+ +F+++E + Y+ T+ + +G+ FTA AGH+LG ++++I + G +++
Sbjct: 114 YTLDDVDTAFEKVEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCV 173
Query: 188 DYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNR--ERKLTQLIHTVVSKGGRV 245
D++ + +RHLN + +++ + + R+ E+ +T+++ TV KG +
Sbjct: 174 DFNHKKERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCM 233
Query: 246 LLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDI 305
++ + GR E+ +LD+ W N + G + S++A + ++ + MN+ +
Sbjct: 234 IV-IDTAGRVLELAHLLDQLWSN--ADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKL 290
Query: 306 RKKFKDS-QTNPFIFKNISYLKNLDEFEDF-GPSVMLASPGMLQNGLSRDILEKWCPEEK 363
K S + NPF K+++ + E P V+L S +++G SR++ WC + +
Sbjct: 291 FKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELFLDWCSDPR 350
Query: 364 NLVLVTGYSVEGTMAKYLL 382
N V++T T+A L+
Sbjct: 351 NGVILTARPASFTLAAKLV 369
>SPBC1709.15c [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 797
Score = 105 bits (262), Expect = 3e-22
Identities = 85/319 (26%), Positives = 145/319 (44%), Gaps = 31/319 (9%)
Query: 67 DLLLISHFHLDHAASLPYVMQRTNFRGR-VFMTHPTKAIYRWLLNDFVKVTSIGDSPGQD 125
DL+L+SH L H L Y + +++ ++ T PT + R + D +K I D
Sbjct: 45 DLILLSHSDLAHIGGLVYAYYKYDWKNAYIYATLPTINMGRMTMLDAIKSNYISDM---- 100
Query: 126 SSNDNLYSDEDLAESFDRIETIDYHSTM----EVNGIKFTAFHAGHVLGAAMFQIEIAGV 181
S D+ FD I + Y + +G+ TA++AGH LG ++ +
Sbjct: 101 -------SKADVDAVFDSIIPLRYQQPTLLLGKCSGLTITAYNAGHTLGGTLWSLIKESE 153
Query: 182 RVLFTGDYSREVDRHLNSAEVPPQS--------SDVIIVESTFGTATHEPRQNRERKLTQ 233
VL+ D++ D+HLN A + + +I ++ + R+ R+ +
Sbjct: 154 SVLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSIPSRKKRDEAFIE 213
Query: 234 LIHTVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSV 293
+ + + KGG VLLPV A R E+ ILD +W + L PI + S + K +
Sbjct: 214 SVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPL---PFPILFLSPTSTKTIDY 270
Query: 294 FQTYVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDF--GPSVMLASPGMLQNGLS 351
++ + M D+I + F ++ N F+NI+ + + + GP V+LA+ L+ G S
Sbjct: 271 AKSMIEWMGDNIVRDFGINE-NLLEFRNINTITDFSQISHIGPGPKVILATALTLECGFS 329
Query: 352 RDILEKWCPEEKN-LVLVT 369
+ IL E N L+L T
Sbjct: 330 QRILLDLMSENSNDLILFT 348
>ECU05g0390 [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 639
Score = 75.1 bits (183), Expect = 4e-13
Identities = 64/318 (20%), Positives = 136/318 (42%), Gaps = 26/318 (8%)
Query: 24 EVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLISHFHLDHAASLP 83
E G CH+L+ ++++ G A P + + + D +L++ F+++ LP
Sbjct: 15 ETGVYCHMLEIDNTKILVNCGAPYAMDMSMYTPVLPQ--ILSCDAILLTSFNINCIGGLP 72
Query: 84 YVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYSDEDLAESFDR 143
YV+ R N+ +VF + P K + + L++ ++ G +SS D F+R
Sbjct: 73 YVL-RNNYYNKVFSSVPIKVLGKICLDEHLR------GMGLESSVD--------TGCFER 117
Query: 144 IETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVP 203
I I Y VN ++ A+++G+ +G +++I R++ + + + HL+
Sbjct: 118 ISEIKYSQPTAVNNVEICAYNSGNSIGGCLYKISKGPERIIVGFNVNHRKENHLDGMSFS 177
Query: 204 P-QSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALGRAQEIMLIL 262
+ + A + R+ ++ + G +V+LPV R E+ LIL
Sbjct: 178 GIGDCSLCVFNGNHVLAENISIAKRDDVFRDMVGGALDSGRKVVLPV-KYSRFLEVALIL 236
Query: 263 DEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKDSQTNPFIFKNI 322
+ NG++ S ++ + ++ + + + F + + NPF F+ I
Sbjct: 237 NGLMAQR-----NGKIACL--SYFGQRFVERAKSMIEWAGEKVSSMFSEEKVNPFEFERI 289
Query: 323 SYLKNLDEFEDFGPSVML 340
++K + F V++
Sbjct: 290 EFMKYYQDVSRFDVVVVV 307
>Hs8922726 [A] KOG1138 Predicted cleavage and polyadenylation specificity
factor (CPSF subunit)
Length = 658
Score = 74.7 bits (182), Expect = 5e-13
Identities = 85/387 (21%), Positives = 159/387 (40%), Gaps = 45/387 (11%)
Query: 55 LPYYDEFDLSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVK 114
LP + DLST+D++LIS++H A LPY+ + T F G V+ T PT I R L+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 115 ------------------VTSIGDSPGQD----SSNDNLYSDEDLAESFDRIETIDYHST 152
+ + SP +D S+ Y+ +++ + +I+ + Y
Sbjct: 143 FIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQK 202
Query: 153 MEVNG-IKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVII 211
+E+ G ++ T +G+ LG++ + I+ +V + S + ++SDV++
Sbjct: 203 IELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLV 262
Query: 212 VESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKE 271
+ T P + + V GG VL+P + G +++ L +Y +
Sbjct: 263 LTGLTQIPTANP-DGMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQY----ID 317
Query: 272 ELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEF 331
G P+++ S +A + Q + + + + K + PF + L +
Sbjct: 318 SAGLSSAPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEP-PFPHAELIQTNKLKHY 376
Query: 332 E----DFG-----PSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVT--GYSVEGTMAKY 380
DF P V+ L+ G +E W N V+ T +S +A Y
Sbjct: 377 PSIHGDFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEPDFSYLEALAPY 436
Query: 381 LLLEPEAIPSVHNPEITIPRRCQVDEI 407
+P A+ ++ P T QV ++
Sbjct: 437 ---QPLAMKCIYCPIDTRLNFIQVSKL 460
>7294185 [A] KOG1138 Predicted cleavage and polyadenylation specificity
factor (CPSF subunit)
Length = 630
Score = 65.5 bits (158), Expect = 3e-10
Identities = 74/350 (21%), Positives = 144/350 (41%), Gaps = 45/350 (12%)
Query: 54 SLPYYDEFDLSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFV 113
+LP D S +D++LIS++ + +LPY+ + T F+G+V+ T PT I R+ L + V
Sbjct: 61 NLPMDKMLDFSEVDVILISNYL--NMLALPYITENTGFKGKVYATEPTLQIGRFFLEELV 118
Query: 114 KVTSIG----------------DSPGQDSSN----DNLYSDEDLAESFDRIETIDYHSTM 153
+ SP ++ ++S +D+ S ++ + Y +
Sbjct: 119 DYIEVSPKACTARLWKEKLHLLPSPLSEAFRAKKWRTIFSLKDVQGSLSKVTIMGYDEKL 178
Query: 154 EVNGIKF-TAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIV 212
++ G T +G+ LG++ + + A ++ + S + + +DV+I+
Sbjct: 179 DILGAFIATPVSSGYCLGSSNWVLSTAHEKICYVSGSSTLTTHPRPINQSALKHADVLIM 238
Query: 213 ESTFGTATHEPRQNRERKLTQLIHTV---VSKGGRVLLPVFALGRAQEIMLILDEYWQNH 269
T P N + KL +L V + G L+P + G ++ L E +
Sbjct: 239 TG----LTQAPTVNPDTKLGELCMNVALTIRNNGSALIPCYPSG----VVYDLFECLTQN 290
Query: 270 KEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKF---KDSQTNPFIFKNISYLK 326
E G VP+F+ S +A ++ ++ + K D + F +N + LK
Sbjct: 291 LENAGLNNVPMFFISPVADSSLAYSNILAEWLSSAKQNKVYLPDDPFPHAFYLRN-NKLK 349
Query: 327 NLDEF------EDF-GPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVT 369
+ + +DF P V+ L+ G + +E W N ++ T
Sbjct: 350 HYNHVFSEGFSKDFRQPCVVFCGHPSLRFGDAVHFIEMWGNNPNNSIIFT 399
>YLR115w [A] KOG1135 mRNA cleavage and polyadenylation factor II complex
subunit CFT2 (CPSF subunit)
Length = 859
Score = 55.8 bits (133), Expect = 2e-07
Identities = 61/304 (20%), Positives = 136/304 (44%), Gaps = 22/304 (7%)
Query: 31 ILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLISHFHLD--HAASLPYVMQR 88
++++ TL++D G +P+ Y E + ID++++S ++ A SL Y
Sbjct: 19 VVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFT 78
Query: 89 TNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYSDEDLAESFDRIETID 148
++F R+ + I ++ S G D++ +L ED+ SFD I +
Sbjct: 79 SHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDL---EDIEISFDHIVPLK 135
Query: 149 YHSTMEV----NGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEV-- 202
Y +++ +G+ A++AG G +++ I ++++ ++ D LN+A +
Sbjct: 136 YSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILD 195
Query: 203 ---PPQS-----SDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALGR 254
P S S +I FG++ +P + R + + +S G V++PV G+
Sbjct: 196 ATGKPLSTLMRPSAIITTLDRFGSS--QPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGK 253
Query: 255 AQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKD-SQ 313
++ + E + + QVP+ S + ++ ++ + ++ + K +++ +
Sbjct: 254 FLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNN 313
Query: 314 TNPF 317
T+PF
Sbjct: 314 TSPF 317
>CE27371 [A] KOG1138 Predicted cleavage and polyadenylation specificity
factor (CPSF subunit)
Length = 646
Score = 55.1 bits (131), Expect = 4e-07
Identities = 70/343 (20%), Positives = 136/343 (39%), Gaps = 41/343 (11%)
Query: 59 DEFDLSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTS- 117
D + TID +L+S++ + LP+ + + F G++++T + L+ + ++ S
Sbjct: 83 DMLKMDTIDAILVSNY--ESFVGLPFYTEGSGFSGKIYVTEIAYQYGKLLMEEMLEFISR 140
Query: 118 ---------------IGDSPGQDSSND----NLYSDEDLAESFDRIETIDYHSTMEVNGI 158
G P N Y+ D+ ++ T+ ++ T+++ I
Sbjct: 141 IEVLPSDKKWKREEFCGKFPNPPFQNPVEWRPYYTTTDMHSCLAKVITLSFNQTIDLFRI 200
Query: 159 KFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGT 218
K T +GH G+A + I+ + + + P ++ D I+V S
Sbjct: 201 KVTPVVSGHTYGSAYWTIKTENEQFAYLSASNPSATDVKLMETAPLRAVDHILVTS-LSR 259
Query: 219 ATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNG-- 276
+ L + I V+ K G VLLP+ +G E++ + + NG
Sbjct: 260 LVDTTAKEMGYSLIKTITDVLKKHGSVLLPICPVGPIFEMIEAVSDIITT-----TNGIP 314
Query: 277 -QVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKDSQTNPFIFKNI---SYLKNLDEF- 331
PI++ S +AK +++ M++ R+ P+ N+ +K D
Sbjct: 315 LDTPIYFISPVAKSAIAMASISAEWMSES-RQNAVYLPEEPYSHSNLIKSGRVKIYDSLY 373
Query: 332 -----EDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVT 369
E P V+ AS L+ G + ++E + KN V+VT
Sbjct: 374 GSFSKEFKTPCVIFASHASLRIGDAAHMVEVLGSDPKNAVIVT 416
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,366,817
Number of Sequences: 60738
Number of extensions: 1849525
Number of successful extensions: 4641
Number of sequences better than 1.0e-05: 22
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4534
Number of HSP's gapped (non-prelim): 35
length of query: 764
length of database: 30,389,216
effective HSP length: 114
effective length of query: 650
effective length of database: 23,465,084
effective search space: 15252304600
effective search space used: 15252304600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)