ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII1236  suspect: LH   JO    KOG0009  Posttranslational modification, protein turnover, chaperones   Ubiquitin-like/40S ribosomal S30 protein fusion
r_klactIII1236  suspect: LH   JO    KOG0009  Translation, ribosomal structure and biogenesis                Ubiquitin-like/40S ribosomal S30 protein fusion

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII1236 437865 436810 -352 
         (352 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR287c [JO] KOG0009 Ubiquitin-like/40S ribosomal S30 protein fu...    99   1e-20

>YLR287c [JO] KOG0009 Ubiquitin-like/40S ribosomal S30 protein fusion
          Length = 355

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 84/363 (23%), Positives = 135/363 (37%), Gaps = 27/363 (7%)

Query: 2   SSTLSDDIKRLKT------EF--PYTSVESLHGIPKKTKLPAXXXXXXXXXXXXXXXXNA 53
           SS   DD+K L+       +F  PY   E L  I   TKL                  + 
Sbjct: 5   SSDRKDDVKLLELLNSIDEQFLVPYKKPEDLRKISSTTKLQGSTPTKELDKLASVLKAHC 64

Query: 54  TKLGIISTPDKISNNEDAFKTQMVELMNVVFYLLSLVPLFHDSHFAD-YFINKLDNDIVS 112
           TK+GI+  P    NN     T++      +FYLLSL PLF+++     YF ++LD   + 
Sbjct: 65  TKIGIVCKPGTFDNNHKVVITEIQNFSRPLFYLLSLFPLFYNNKDCPKYFTDQLDESTLQ 124

Query: 113 LVQSIHKLSDELVEIVNSDAKDFKDPIIAEDEKLAKFLKERLISIGMLWSQCEHLELLSN 172
           L+  +     EL E + +D     D             KERL S+G +++ C+ L   S 
Sbjct: 125 LLDGLRDFIAELQERLKNDENASLD-------------KERLTSVGKIFNACDSLSNCSK 171

Query: 173 QGNLGLLTEYLSSSVKLLQDSIEELEEWLEDP--VINSDPFGMNDKFXXXXXXXXXXXXX 230
            G  G+L   L  +V ++ D++ E++EWLE+P    NSD   ++ +              
Sbjct: 172 AGPYGILANILKDNVAIMDDTMNEIKEWLEEPDFSANSDDIFLDFEDSESESDSQKEEFD 231

Query: 231 XXXXXXXXXFVXXXXXXXXXXXXXXXXXXXXITIKKDTVTTAAYLSELNQLH---NSIVS 287
                                            + KD          L+ +H     I  
Sbjct: 232 QEKVYENIKLFFDGFTRKIKLIKLLVSTFRKTLVSKDFTPKRNQAETLDSIHTYLKEIQL 291

Query: 288 NSDTLISSTLVNAEYEVDPEVETSVLAINNDXXXXXXXXTQLNGSDESKLKWIQVWSNKW 347
             D ++S+     +   + EV+    A+           ++L   D  + KWI  W  K+
Sbjct: 292 LLDEVVSTVQFEPKNFTNEEVKEEQAALVAVTKKVLIQMSKLYEGDPKRKKWIDTWEIKF 351

Query: 348 SSL 350
           + L
Sbjct: 352 NEL 354


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.313    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,675,177
Number of Sequences: 60738
Number of extensions: 582173
Number of successful extensions: 1473
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 3
length of query: 352
length of database: 30,389,216
effective HSP length: 107
effective length of query: 245
effective length of database: 23,890,250
effective search space: 5853111250
effective search space used: 5853111250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)