ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1349 suspect: Pn B KOG2510 Chromatin structure and dynamics SWI-SNF chromatin-remodeling complex protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1349 471500 475564 1355
(1355 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
Hs21264575 [B] KOG2510 SWI-SNF chromatin-remodeling complex protein 55 8e-07
Hs21264569 [B] KOG2510 SWI-SNF chromatin-remodeling complex protein 55 8e-07
Hs21264565 [B] KOG2510 SWI-SNF chromatin-remodeling complex protein 55 8e-07
HsM19923341 [B] KOG2510 SWI-SNF chromatin-remodeling complex pro... 54 2e-06
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 54 2e-06
CE25208 [B] KOG1279 Chromatin remodeling factor subunit and rela... 52 6e-06
>Hs21264575 [B] KOG2510 SWI-SNF chromatin-remodeling complex protein
Length = 2068
Score = 55.1 bits (131), Expect = 8e-07
Identities = 122/533 (22%), Positives = 179/533 (32%), Gaps = 111/533 (20%)
Query: 906 IAQSALPTSTREQRMTGSPSTPPIRQSDNPY-QRTYPPAARQPLINEGSETNVKSSQNHQ 964
+A++ P+S +Q P NPY Q+ PP+ Q G SQ Q
Sbjct: 374 LARTPQPSSPMDQM---GKMRPQPYGGTNPYSQQQGPPSGPQQ--GHGYPGQPYGSQTPQ 428
Query: 965 RGALPANYESQVRTLAPQTSSGSALPVIARLDPS--------PERYQSQGTPERYQQNYA 1016
R P + + ++ S +P + PS P Q P++ Q Y+
Sbjct: 429 R--YPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486
Query: 1017 ENY-SNTVESGPNYSLK-QYTPPEADQQFKQHQLPPTQP------GGHPSEHGRT--HFK 1066
+ S T + P+Y + Q PP+ + P+QP +PS+ T H +
Sbjct: 487 QQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQ 546
Query: 1067 AQYPQSQPNHQHPYQNANYNGPA---YNSSAGFNPPNVQQATYETIAES----------- 1112
+Q P SQP Q PYQ PA + A + P QQ+ ++
Sbjct: 547 SQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQD 606
Query: 1113 --GDFSSVSQREQYRREGEPRI-------PQSLPHLE---------VEG----------- 1143
G +S + + G+ + P SLP L EG
Sbjct: 607 SFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGI 666
Query: 1144 ---QNSFSN-ARAPFSPHSNSNMNPHMSAPIDETPTPLGVNDREMRGRIPRHLAQPNLYS 1199
Q SN A++PFSPH+ +PH+ +P+P+G P +AQ
Sbjct: 667 SSSQGEQSNPAQSPFSPHT----SPHLPGIRGPSPSPVG---------SPASVAQSRSGP 713
Query: 1200 RQHGA-PRQVSPDYDARTMHPGTMHPGPN-AHIPQGTSY-GMHQHMPQGKVPVRG----- 1251
A P P MHP N + I Q Y + MPQ P G
Sbjct: 714 LSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSP 773
Query: 1252 --PPNGML-----------QGTVNPQYGVGYGPQRYAPSSAVXXXXXXXXXXXXXXXXXX 1298
P G + G+ PQ G YGPQ P
Sbjct: 774 RQPSGGQIHTGMGSYQQNSMGSYGPQ-GGQYGPQGGYPRQPNYNALPNANYPSAGMAGGI 832
Query: 1299 XXXVNGGRYNQHQSPVPPQPGFIPQGPVTNKLHSGNMDKQTNRKKLYEDIRSG 1351
GG+ H P P G +P G +++ GN N + + SG
Sbjct: 833 NPMGAGGQ--MHGQPGIPPYGTLPPGRMSH-ASMGNRPYGPNMANMPPQVGSG 882
>Hs21264569 [B] KOG2510 SWI-SNF chromatin-remodeling complex protein
Length = 1374
Score = 55.1 bits (131), Expect = 8e-07
Identities = 122/533 (22%), Positives = 179/533 (32%), Gaps = 111/533 (20%)
Query: 906 IAQSALPTSTREQRMTGSPSTPPIRQSDNPY-QRTYPPAARQPLINEGSETNVKSSQNHQ 964
+A++ P+S +Q P NPY Q+ PP+ Q G SQ Q
Sbjct: 374 LARTPQPSSPMDQM---GKMRPQPYGGTNPYSQQQGPPSGPQQ--GHGYPGQPYGSQTPQ 428
Query: 965 RGALPANYESQVRTLAPQTSSGSALPVIARLDPS--------PERYQSQGTPERYQQNYA 1016
R P + + ++ S +P + PS P Q P++ Q Y+
Sbjct: 429 R--YPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486
Query: 1017 ENY-SNTVESGPNYSLK-QYTPPEADQQFKQHQLPPTQP------GGHPSEHGRT--HFK 1066
+ S T + P+Y + Q PP+ + P+QP +PS+ T H +
Sbjct: 487 QQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQ 546
Query: 1067 AQYPQSQPNHQHPYQNANYNGPA---YNSSAGFNPPNVQQATYETIAES----------- 1112
+Q P SQP Q PYQ PA + A + P QQ+ ++
Sbjct: 547 SQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQD 606
Query: 1113 --GDFSSVSQREQYRREGEPRI-------PQSLPHLE---------VEG----------- 1143
G +S + + G+ + P SLP L EG
Sbjct: 607 SFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGI 666
Query: 1144 ---QNSFSN-ARAPFSPHSNSNMNPHMSAPIDETPTPLGVNDREMRGRIPRHLAQPNLYS 1199
Q SN A++PFSPH+ +PH+ +P+P+G P +AQ
Sbjct: 667 SSSQGEQSNPAQSPFSPHT----SPHLPGIRGPSPSPVG---------SPASVAQSRSGP 713
Query: 1200 RQHGA-PRQVSPDYDARTMHPGTMHPGPN-AHIPQGTSY-GMHQHMPQGKVPVRG----- 1251
A P P MHP N + I Q Y + MPQ P G
Sbjct: 714 LSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSP 773
Query: 1252 --PPNGML-----------QGTVNPQYGVGYGPQRYAPSSAVXXXXXXXXXXXXXXXXXX 1298
P G + G+ PQ G YGPQ P
Sbjct: 774 RQPSGGQIHTGMGSYQQNSMGSYGPQ-GGQYGPQGGYPRQPNYNALPNANYPSAGMAGGI 832
Query: 1299 XXXVNGGRYNQHQSPVPPQPGFIPQGPVTNKLHSGNMDKQTNRKKLYEDIRSG 1351
GG+ H P P G +P G +++ GN N + + SG
Sbjct: 833 NPMGAGGQ--MHGQPGIPPYGTLPPGRMSH-ASMGNRPYGPNMANMPPQVGSG 882
>Hs21264565 [B] KOG2510 SWI-SNF chromatin-remodeling complex protein
Length = 2285
Score = 55.1 bits (131), Expect = 8e-07
Identities = 122/533 (22%), Positives = 179/533 (32%), Gaps = 111/533 (20%)
Query: 906 IAQSALPTSTREQRMTGSPSTPPIRQSDNPY-QRTYPPAARQPLINEGSETNVKSSQNHQ 964
+A++ P+S +Q P NPY Q+ PP+ Q G SQ Q
Sbjct: 374 LARTPQPSSPMDQM---GKMRPQPYGGTNPYSQQQGPPSGPQQ--GHGYPGQPYGSQTPQ 428
Query: 965 RGALPANYESQVRTLAPQTSSGSALPVIARLDPS--------PERYQSQGTPERYQQNYA 1016
R P + + ++ S +P + PS P Q P++ Q Y+
Sbjct: 429 R--YPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486
Query: 1017 ENY-SNTVESGPNYSLK-QYTPPEADQQFKQHQLPPTQP------GGHPSEHGRT--HFK 1066
+ S T + P+Y + Q PP+ + P+QP +PS+ T H +
Sbjct: 487 QQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQ 546
Query: 1067 AQYPQSQPNHQHPYQNANYNGPA---YNSSAGFNPPNVQQATYETIAES----------- 1112
+Q P SQP Q PYQ PA + A + P QQ+ ++
Sbjct: 547 SQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQD 606
Query: 1113 --GDFSSVSQREQYRREGEPRI-------PQSLPHLE---------VEG----------- 1143
G +S + + G+ + P SLP L EG
Sbjct: 607 SFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGI 666
Query: 1144 ---QNSFSN-ARAPFSPHSNSNMNPHMSAPIDETPTPLGVNDREMRGRIPRHLAQPNLYS 1199
Q SN A++PFSPH+ +PH+ +P+P+G P +AQ
Sbjct: 667 SSSQGEQSNPAQSPFSPHT----SPHLPGIRGPSPSPVG---------SPASVAQSRSGP 713
Query: 1200 RQHGA-PRQVSPDYDARTMHPGTMHPGPN-AHIPQGTSY-GMHQHMPQGKVPVRG----- 1251
A P P MHP N + I Q Y + MPQ P G
Sbjct: 714 LSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSP 773
Query: 1252 --PPNGML-----------QGTVNPQYGVGYGPQRYAPSSAVXXXXXXXXXXXXXXXXXX 1298
P G + G+ PQ G YGPQ P
Sbjct: 774 RQPSGGQIHTGMGSYQQNSMGSYGPQ-GGQYGPQGGYPRQPNYNALPNANYPSAGMAGGI 832
Query: 1299 XXXVNGGRYNQHQSPVPPQPGFIPQGPVTNKLHSGNMDKQTNRKKLYEDIRSG 1351
GG+ H P P G +P G +++ GN N + + SG
Sbjct: 833 NPMGAGGQ--MHGQPGIPPYGTLPPGRMSH-ASMGNRPYGPNMANMPPQVGSG 882
>HsM19923341 [B] KOG2510 SWI-SNF chromatin-remodeling complex protein
Length = 2285
Score = 53.9 bits (128), Expect = 2e-06
Identities = 105/451 (23%), Positives = 157/451 (34%), Gaps = 99/451 (21%)
Query: 906 IAQSALPTSTREQRMTGSPSTPPIRQSDNPYQRTYPPAARQPLINEGSETNVKSSQNHQR 965
+A++ P+S +Q P NPY + P + P G SQ QR
Sbjct: 374 LARTPQPSSPMDQM---GKMRPQPYGGTNPYSQQQGPPS-DPQQGHGYPGQPYGSQTPQR 429
Query: 966 GALPANYESQVRTLAPQTSSGSALPVIARLDPS--------PERYQSQGTPERYQQNYAE 1017
P + + ++ S +P + PS P Q P++ Q Y++
Sbjct: 430 --YPMTVQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQ 487
Query: 1018 NY-SNTVESGPNYSLK-QYTPPEADQQFKQHQLPPTQP------GGHPSEHGRT--HFKA 1067
S T + P+Y + Q PP+ + P+QP +PS+ T H ++
Sbjct: 488 QPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQS 547
Query: 1068 QYPQSQPNHQHPYQNANYNGPA---YNSSAGFNPPNVQQATYETIAES------------ 1112
Q P SQP Q PYQ PA + A + P QQ+ ++
Sbjct: 548 QPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDS 607
Query: 1113 -GDFSSVSQREQYRREGEPRI-------PQSLPHLE---------VEG------------ 1143
G +S + + G+ + P SLP L EG
Sbjct: 608 FGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGIS 667
Query: 1144 --QNSFSN-ARAPFSPHSNSNMNPHMSAPIDETPTPLGVNDREMRGRIPRHLAQPNLYSR 1200
Q SN A++PFSPH+ +PH+ +P+P+G P +AQ
Sbjct: 668 SSQGEQSNPAQSPFSPHT----SPHLPGIRGPSPSPVG---------SPASVAQSRSGPL 714
Query: 1201 QHGA-PRQVSPDYDARTMHPGTMHPGPN-AHIPQGTSY-GMHQHMPQGKVPVRG---PPN 1254
A P P MHP N + I Q Y + MPQ P G P
Sbjct: 715 SPAAVPGNQMPPRPPSGSSDSIMHPSMNQSSIAQDRGYMQRNSQMPQYSSPQPGSALSPR 774
Query: 1255 GMLQGTVNPQYGV-------GYGPQ--RYAP 1276
+ G ++ G YGPQ +Y P
Sbjct: 775 QLSGGQIHTGMGSYQQNSMGSYGPQGGQYGP 805
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 53.5 bits (127), Expect = 2e-06
Identities = 60/305 (19%), Positives = 111/305 (35%), Gaps = 24/305 (7%)
Query: 878 LVVTENTTSNASSEELPKQTPTPRMQPMIAQSALPTSTREQRMTGSPSTPPIRQSDNPYQ 937
L + + +++ +Q P Q A Q+ P +Q Q
Sbjct: 545 LAALQQQQAQQQQQQVQQQQQAPPQQQQQAAMLQAQQQHHQQQLSMYGQPMGQQPQTAQQ 604
Query: 938 RTYPPAARQPLINEGSETNVKSSQNHQRGALPANYESQVRTLAPQTSSGSALPVIARLDP 997
+ PP QP + S+ + Q HQ+ +L + + + +S A
Sbjct: 605 QVVPPVTSQPPVVAASQQ--QQQQQHQQQSLNDQLQHSINDIVGGGNSSGATGGAQNQHQ 662
Query: 998 SPERYQSQGTPERYQQNYAENYSNTVESGPNYSLKQYTPPEADQQFKQHQLPPTQPGGHP 1057
+ + +P +QQN N + ++ +++ P + QQ Q Q P QP
Sbjct: 663 QQPQLAAMSSP-LHQQN-LPNMHHLIQP----TMETTQPTQQQQQTSQQQQQPQQPQATL 716
Query: 1058 SEHGRTHFKAQYP----QSQPNHQHPYQNANYNGPAYNSSA---GFNPPNVQQATYETIA 1110
+ + Q P Q P+HQ + N + ++ A G N P Q T
Sbjct: 717 TSPHHQQMQHQSPIHQQQQSPHHQQHLPSYNQSQQQFDPFANILGDNQPAASQQTMSPAH 776
Query: 1111 ESGDFSSVSQREQYRREGEP--RIPQSLPHLEVEGQNSFSNARAPFSPHSNSNMNPHMSA 1168
S + Q++Q++ + +P ++PQS Q S + S + H+S+
Sbjct: 777 VSSPVPAQMQQQQHQTQQQPSQQVPQS-------QQQQVSQPQQQTQQQQPSTPSHHLSS 829
Query: 1169 PIDET 1173
++ET
Sbjct: 830 ILNET 834
>CE25208 [B] KOG1279 Chromatin remodeling factor subunit and related
transcription factors
Length = 789
Score = 52.0 bits (123), Expect = 6e-06
Identities = 50/210 (23%), Positives = 75/210 (34%), Gaps = 28/210 (13%)
Query: 898 PTPRMQPMIAQSALPTSTREQRMTGSPSTPPIRQSDNPYQRTYPPAARQPLINEGSETNV 957
PTP++Q ++A+P ++M S + R P PP P + +
Sbjct: 564 PTPQVQISAQEAAIP-----EKMDTSEAATAARPPSTPQAPQAPPVQAAPAPVQAPQAPQ 618
Query: 958 KSSQNHQRGALPANYESQVRTLAPQTSSGSALPVIARLDPSPERYQSQGTPERYQQNYAE 1017
Q +Q P Q PQ ++Y P++ QQ+ A+
Sbjct: 619 APPQAYQGYGGPGGPPQQAYRYPPQQG---------------QQYSPYPPPQQQQQHQAQ 663
Query: 1018 NYSNTVESGPNYSLKQYTPPEADQQFKQHQLPPTQ----PGGHPSEHGRTHFKAQ-YPQS 1072
+ GP + PP QQ+ PP Q PGG+P + R ++AQ YP
Sbjct: 664 QAQSQAHYGPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGP 723
Query: 1073 QPNHQ---HPYQNANYNGPAYNSSAGFNPP 1099
P Q + Y G Y G PP
Sbjct: 724 PPPQQQRGYGYPPPPQPGHPYQQPYGQMPP 753
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.312 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,092,412
Number of Sequences: 60738
Number of extensions: 3958766
Number of successful extensions: 10852
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10796
Number of HSP's gapped (non-prelim): 34
length of query: 1355
length of database: 30,389,216
effective HSP length: 119
effective length of query: 1236
effective length of database: 23,161,394
effective search space: 28627482984
effective search space used: 28627482984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)