ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII1368  suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII1368 478376  479662 429  
         (429 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR261c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...   308   8e-84

>YDR261c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 562

 Score =  308 bits (790), Expect = 8e-84
 Identities = 177/439 (40%), Positives = 238/439 (53%), Gaps = 53/439 (12%)

Query: 28  YFEYENYKVRGVNLGGWLVLEPFITPSLFETFRT-----NEYNDDGIPYDEYHYCQYLGE 82
           Y+  +   V+G+ +GGWLV EP+ITPSL+    +     N  ++  I  DE+  C+ LG 
Sbjct: 47  YYANDTITVKGITIGGWLVTEPYITPSLYRNATSLAKQQNSSSNISI-VDEFTLCKTLGY 105

Query: 83  DLARDRLKQHWSTWITEADFEDISNTGLNTVRIPIGYWAFELLDD-----------DPYV 131
           + +   L  H+ TWITE DFE I   G N VRIPIGYWA++   D           DPYV
Sbjct: 106 NTSLTLLDNHFKTWITEDDFEQIKTNGFNLVRIPIGYWAWKQNTDKNLYIDNITFNDPYV 165

Query: 132 S-GLQEAYLDQAIEWARSYGLKVWVDLHGAPGSQNGFDNSGLRDQVEFQQDGNWDVFKNV 190
           S GLQ  YL+ A+EWA+ Y L VW+DLHGAPGSQNGFDNSG R       D  W    N 
Sbjct: 166 SDGLQLKYLNNALEWAQKYELNVWLDLHGAPGSQNGFDNSGER---ILYGDLGWLRLNNT 222

Query: 191 LAYVIEKYSRDEF--------TDTVVGVEVLNEPLGPVIDMDKLKELYNWAYDYLRNDLQ 242
               +  + RD F           VVG++++NEPLG  ID+  + E+Y  A+D L+ +  
Sbjct: 223 KELTLAIW-RDMFQTFLNKGDKSPVVGIQIVNEPLGGKIDVSDITEMYYEAFDLLKKNQN 281

Query: 243 R--DQILVIHDAFQKANYFDDQLT---------------VEQGAFGVLVDHHHYQVFSPE 285
              +   VIHD FQ   +++ +L                    +  +LVDHHHY+VF+  
Sbjct: 282 SSDNTTFVIHDGFQGIGHWNLELNPTYQNVSHHYFNLTGANYSSQDILVDHHHYEVFTDA 341

Query: 286 EVGRTIDEHISVVCEQGKETLTEA--HWNVVGEWSAALTDCTKWLNGVGIGARYDGSFVK 343
           ++  T    I  +   G     E   H  VVGEWS A+TDC  WLNGVG+GARYDGS+  
Sbjct: 342 QLAETQFARIENIINYGDSIHKELSFHPAVVGEWSGAITDCATWLNGVGVGARYDGSYYN 401

Query: 344 N---QDTSYWIGSCEGSQDISTWTSDKKDNYRKYIEAQLDAYEIR-NGWIYWCYKTEDTL 399
                     +G+C     ++ WT D +D  R++IEAQL  Y  +  GWI+W +KTED +
Sbjct: 402 TTLFTTNDKPVGTCISQNSLADWTQDYRDRVRQFIEAQLATYSSKTTGWIFWNWKTEDAV 461

Query: 400 EWDYRKLVQSGLFPQPLTN 418
           EWDY KL ++ LFP P  N
Sbjct: 462 EWDYLKLKEANLFPSPFDN 480


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,296,665
Number of Sequences: 60738
Number of extensions: 1320334
Number of successful extensions: 2596
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2588
Number of HSP's gapped (non-prelim): 1
length of query: 429
length of database: 30,389,216
effective HSP length: 109
effective length of query: 320
effective length of database: 23,768,774
effective search space: 7606007680
effective search space used: 7606007680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)