ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1380 check: MH KL KOG1001 Replication, recombination and repair Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
r_klactIII1380 check: MH KL KOG1001 Transcription Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1380 481598 486412 1605
(1605 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 766 0.0
SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF... 441 e-123
SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF... 359 2e-98
SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16 272 4e-72
At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 267 1e-70
At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 261 5e-69
At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 260 1e-68
YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16 259 2e-68
At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 257 9e-68
At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 249 3e-65
At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 248 7e-65
CE11083 [KL] KOG4439 RNA polymerase II transcription termination... 244 1e-63
YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 237 1e-61
Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/... 219 3e-56
At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 216 2e-55
7298963 [KL] KOG4439 RNA polymerase II transcription termination... 200 2e-50
At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16 192 3e-48
SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF... 186 3e-46
At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 160 2e-38
CE14110 [KL] KOG4439 RNA polymerase II transcription termination... 157 2e-37
Hs19923174 [KL] KOG4439 RNA polymerase II transcription terminat... 152 5e-36
At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16 128 8e-29
SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase 124 9e-28
SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase 112 5e-24
YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase 104 1e-21
SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase 102 4e-21
YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase 102 5e-21
Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase 100 3e-20
CE11450 [KL] KOG4439 RNA polymerase II transcription termination... 100 3e-20
At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase 99 4e-20
7298962 [KL] KOG4439 RNA polymerase II transcription termination... 99 4e-20
At5g44800 [R] KOG0383 Predicted helicase 99 5e-20
Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase 98 9e-20
CE23294 [KL] KOG4439 RNA polymerase II transcription termination... 97 2e-19
CE03657 [R] KOG0383 Predicted helicase 97 3e-19
CE25143 [L] KOG0390 DNA repair protein SNF2 family 96 4e-19
YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein 96 5e-19
At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase 96 5e-19
HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 96 6e-19
Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 96 6e-19
Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 96 6e-19
Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family 96 6e-19
Hs4506397 [L] KOG0390 DNA repair protein SNF2 family 95 8e-19
At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 95 8e-19
7295868 [L] KOG0390 DNA repair protein SNF2 family 95 1e-18
YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 94 2e-18
SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcr... 94 2e-18
SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain... 93 3e-18
CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase 93 3e-18
At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcri... 93 3e-18
ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase 93 4e-18
CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase 93 4e-18
Hs4557453 [R] KOG0383 Predicted helicase 92 7e-18
At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-co... 92 7e-18
7293795 [R] KOG0383 Predicted helicase 92 7e-18
Hs20533808 [R] KOG0383 Predicted helicase 92 9e-18
At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 92 9e-18
At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase 92 9e-18
Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 91 1e-17
ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB... 91 1e-17
ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 91 1e-17
At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 91 1e-17
At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/... 91 1e-17
At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/... 91 1e-17
7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 91 1e-17
Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 91 2e-17
YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 90 3e-17
YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 90 3e-17
7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 90 3e-17
YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 89 6e-17
Hs4557451 [R] KOG0383 Predicted helicase 89 6e-17
YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 89 7e-17
SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein C... 89 7e-17
CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 89 7e-17
CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 88 1e-16
SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family 88 1e-16
Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 88 1e-16
Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 88 1e-16
At4g31900 [R] KOG0383 Predicted helicase 88 1e-16
YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase 87 2e-16
CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 87 2e-16
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 87 3e-16
YLR247c [L] KOG0298 DEAD box-containing helicase-like transcript... 87 3e-16
At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box ... 87 3e-16
Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/... 86 4e-16
CE17716 [R] KOG0383 Predicted helicase 86 4e-16
7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase 86 4e-16
SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLT... 86 5e-16
ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein 86 5e-16
At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 86 6e-16
YBR073w [L] KOG0390 DNA repair protein SNF2 family 85 8e-16
At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/... 85 8e-16
CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 85 1e-15
SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein 84 1e-15
At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 84 1e-15
YGL163c [L] KOG0390 DNA repair protein SNF2 family 84 2e-15
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 83 3e-15
ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 83 4e-15
7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein 83 4e-15
CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein 82 5e-15
SPBP35G2.10 [R] KOG0383 Predicted helicase 82 7e-15
Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcr... 82 7e-15
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 82 7e-15
Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 82 7e-15
Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 82 7e-15
Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 82 7e-15
At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 82 7e-15
At2g25170 [R] KOG0383 Predicted helicase 82 7e-15
7295362 [L] KOG0298 DEAD box-containing helicase-like transcript... 82 7e-15
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 82 9e-15
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 82 9e-15
SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein 81 2e-14
Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 81 2e-14
At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein 81 2e-14
Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein 80 2e-14
Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 80 3e-14
CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein 80 3e-14
7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 80 3e-14
Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein 80 3e-14
Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 80 3e-14
ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 80 3e-14
At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 80 3e-14
7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 79 4e-14
At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 78 1e-13
HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein 77 2e-13
Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein 77 2e-13
Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein 77 2e-13
CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 77 3e-13
CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 77 3e-13
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 76 4e-13
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 76 4e-13
At3g19210 [L] KOG0390 DNA repair protein SNF2 family 76 4e-13
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 76 5e-13
At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 76 5e-13
At1g05480 [L] KOG0390 DNA repair protein SNF2 family 75 1e-12
7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 75 1e-12
SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family 74 1e-12
CE23323 [L] KOG0390 DNA repair protein SNF2 family 74 2e-12
Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein 73 3e-12
CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 72 5e-12
SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase 71 2e-11
At3g24340 [L] KOG0390 DNA repair protein SNF2 family 71 2e-11
7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase 70 2e-11
At5g20420 [L] KOG0390 DNA repair protein SNF2 family 70 3e-11
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 69 6e-11
Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 67 2e-10
At3g42670 [L] KOG0390 DNA repair protein SNF2 family 67 2e-10
At2g21450 [L] KOG0390 DNA repair protein SNF2 family 67 2e-10
Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase 66 4e-10
Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein 62 6e-09
At2g16390 [L] KOG0390 DNA repair protein SNF2 family 62 6e-09
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 60 2e-08
At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 56 4e-07
>YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1619
Score = 766 bits (1977), Expect = 0.0
Identities = 379/727 (52%), Positives = 523/727 (71%), Gaps = 11/727 (1%)
Query: 879 MTNIYNTADASSLRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSK 938
++N++ D +R LLE +K+ E+ ++GE LTP ++TVNLLKHQR GL WL+ +E S+K
Sbjct: 903 ISNMHAAEDQEQIRALLENVKQSESIIDGEALTPEDMTVNLLKHQRLGLHWLLQVENSAK 962
Query: 939 RGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXX 998
+GGLLADDMGLGKT+Q++AL++AN+ E +S KT L+VAPV+VLRVWK E
Sbjct: 963 KGGLLADDMGLGKTIQAIALMLANRSE-ESKCKTNLIVAPVSVLRVWKGELETKVKKRAK 1021
Query: 999 XXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVD 1058
IFGG N K + W+DLA YD VLVSYQTLA+EFKKHWP +GE
Sbjct: 1022 FTTFIFGGSGNG--KVKHWRDLARYDAVLVSYQTLANEFKKHWPKKL-DGEQNQLPAVPH 1078
Query: 1059 LKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGT 1118
++ +N++K+S+EY+SPF+ NDS FYR++LDE QNIKNK T+A+KACCTI+ +RW LSGT
Sbjct: 1079 IQALNRLKTSNEYYSPFFCNDSTFYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGT 1138
Query: 1119 PIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLR 1178
PIQN++ ELYSLIRFLRIPPY+KE +F DIG K Y Y++ +R+ A++KV+VLL
Sbjct: 1139 PIQNSMDELYSLIRFLRIPPYHKEQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLN 1198
Query: 1179 AIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQK 1238
AIMLRR+K +IDGKP+L+LP K ++ ++L+G+EL+FY ALESK++ AKK+L + +
Sbjct: 1199 AIMLRRSKADKIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQALAKKLLNNSTR 1258
Query: 1239 QGAYSSIXXXXXXXXQACLHSELVKIGESNAKSSKIINGKDFEKDWRPLYF-VSKRMGQN 1297
G+YSS+ QAC HSELV +GE A+ +K+ NGK FE DW LY+ ++ G+
Sbjct: 1259 -GSYSSVLTLLLRLRQACCHSELVVMGEKKAEGTKVANGKSFEDDWLRLYYKITHMSGEA 1317
Query: 1298 QATLNAVNACLDDMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGP 1357
QA V ++ MTC CMEQ++ ++M VL CGH +C C EP+++ + + P A
Sbjct: 1318 QAQ---VITSMNSMTCFWCMEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTK 1374
Query: 1358 KGTNSVNIPCLVCRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGY 1417
G + IPC C+++ N+K+ +S++L+DQV N ++ +DL EY + +QK + KN Y
Sbjct: 1375 GGAFA--IPCKDCQRLTNEKDIVSHKLYDQVINQGFTEEDLHAEYLSEMEKQKIQQKNVY 1432
Query: 1418 TIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRY 1477
+++SL+ S K+E C+ +I++V D + EK++IFSQFT FFEIL HF+K L +L+Y
Sbjct: 1433 VPNFESLEPSTKIEQCIQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKY 1492
Query: 1478 DGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAM 1537
GSM++ +RS I FY+D R++LISMKAGNSGLTLTCANHV++ DPFWNP+VEEQA
Sbjct: 1493 IGSMNAQRRSDVINEFYRDPEKRILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQ 1552
Query: 1538 DRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGF 1597
DRC+RISQ ++V VH+L IK SVEDRI ELQ +KK +V+ AMDP +I+EVN LGR+ELGF
Sbjct: 1553 DRCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVNSLGRRELGF 1612
Query: 1598 LFGLNSL 1604
LFGLN+L
Sbjct: 1613 LFGLNAL 1619
>SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1040
Score = 441 bits (1134), Expect = e-123
Identities = 269/734 (36%), Positives = 406/734 (54%), Gaps = 82/734 (11%)
Query: 892 RDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGK 951
+DL E L T EG TP L L++HQ++GL WL +E+SSK+GG+LADDMGLGK
Sbjct: 366 KDLDEQLVNDPTIREG---TPAGLIPTLMEHQKEGLMWLKRLEESSKKGGILADDMGLGK 422
Query: 952 TVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNS 1011
TVQ+LALL+ PE KS +KTTL++ PV++L+ W +E I G +S
Sbjct: 423 TVQALALLVTRPPESKS-VKTTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHG---SS 478
Query: 1012 SKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEY 1071
K + + L YDIVL +Y +A EFK A D + +
Sbjct: 479 KKHKIAEQLMSYDIVLTTYNVIAYEFKNKM--------------AYDKSIEDNAPIKKFE 524
Query: 1072 FSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLI 1131
PF+ ++E+YRVILDEAQ IKN+ T AA+ CC + ST+RW LSGTP+QN + E YSLI
Sbjct: 525 HLPFF--EAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLI 582
Query: 1132 RFLRIPPYNKEAKFHSD----IGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKT 1187
+FLRI PY+ + F D + + +NT P MK+ + LL+A++LRRTK
Sbjct: 583 KFLRIKPYSDWSSFSKDFTIPLSSNINTSAP-----------MKRFRGLLKAVLLRRTKN 631
Query: 1188 SQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXX 1247
++IDGKPIL LP K +S L E+EFY L+S ++ + +K L+ Y S+
Sbjct: 632 TKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLV 691
Query: 1248 XXXXXXQACLHSELVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNAC 1307
QAC H L+ A+ + + + F+ R +Y NQ AVN
Sbjct: 692 LLLRLRQACCHPWLIV-----AREAAVDDNDSFQAKNRAIY--------NQIYPEAVNRL 738
Query: 1308 --LDDMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYV----DNAKLEPTASFGPKGTN 1361
++ + C +CM+ + +L++ CGH LC +C + D AK + PK
Sbjct: 739 KLIETLQCSLCMDV--VAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPK--- 793
Query: 1362 SVNIPCLVCRKMNNDKEAISYQLFDQVNNLNYSID---DLRLE---------YDKMVAEQ 1409
C VC + + + +SY LF + + + +D LR E Y ++ +
Sbjct: 794 -----CSVCEEYIDTERLLSYALFRRYSGMAPIVDADNKLRTENISELLPKQYSNILENR 848
Query: 1410 KARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKN 1469
+ +K D K S K+E L+ +K++ +K++IFSQF F E+ ++
Sbjct: 849 QMGMK--IFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQE 906
Query: 1470 LGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWN 1529
G+ +L Y G +S+++R+ + +F D N RV+LIS+KAGN GL LTCANHVI+ DPFWN
Sbjct: 907 -GIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWN 965
Query: 1530 PFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNK 1589
P++EEQA+DR HRI Q++ V + R++ ++E+R++ LQ++K+ L++ A+ +RE+++
Sbjct: 966 PYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSALGEKGLREISR 1025
Query: 1590 LGRKELGFLFGLNS 1603
L KEL FLFG++S
Sbjct: 1026 LNTKELSFLFGMSS 1039
>SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 897
Score = 359 bits (922), Expect = 2e-98
Identities = 225/714 (31%), Positives = 367/714 (50%), Gaps = 59/714 (8%)
Query: 901 IETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLM 960
I+ +++ E + L V+LL HQ +G W+ SME+SSK GG++ADDMGLGKT+Q++ALL+
Sbjct: 232 IDLQLKNEQVQSAGLLVSLLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIALLL 291
Query: 961 ANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDL 1020
K + KT L+V VA+L W +E I G ++ K +L
Sbjct: 292 TQKSQDPLR-KTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHG---STKKNLDSYEL 347
Query: 1021 AEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDS 1080
++YD+VL +Y LA E K++ + N A L ++
Sbjct: 348 SQYDVVLTTYSMLAYEMKQNDAFNNNNPATATPPPACSLL------------------ET 389
Query: 1081 EFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYN 1140
+YR++LDEA I+N+ T AAK C + + +RW LSGTPIQN+I E YSL++FLRI PY
Sbjct: 390 SWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYC 449
Query: 1141 KEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPE 1200
+ F DI L + Y + A+K++++LL + + RRTK ++++ PI+ LP
Sbjct: 450 VWSLFAKDISRPLKS-----YRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPP 504
Query: 1201 KHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSE 1260
K ++ + L +E Y S ++ + Y + Q C H
Sbjct: 505 KTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPW 564
Query: 1261 LVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDMTCPVCMEQM 1320
LVK S S +I + ++ + L + T+ + A L D C VC++
Sbjct: 565 LVK-SSSLDNSFRIRDSENVRNACKSL---------DPLTIERI-ATLQDFNCSVCLDPC 613
Query: 1321 DIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLVCRKMNNDKEAI 1380
++ CGH C +C V +G T+++ C +CR +
Sbjct: 614 LAPVFII--PCGHFTCQECMSMLVGQ-------KYGSSSTSTIIAKCPMCRGNIVQDSLV 664
Query: 1381 SYQLFDQVNNLNYSIDDLRLEYDKMVAEQKA-------RLKNGYTIDY----KSLKESKK 1429
+ ++ S+ L L+ ++ +EQ++ R+ +T + K S K
Sbjct: 665 DATILQAIHGPLNSLKQLELDMNQSFSEQESIKLRWENRIDQMFTKKFGKRASEWKSSSK 724
Query: 1430 VEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSAC 1489
+ I + S +EK++++SQF+ + ++ H +K + +RYDG+MS++QR
Sbjct: 725 LNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLE-NIRHVRYDGTMSANQRQKS 783
Query: 1490 IESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREV 1549
+ SF D + VML+S+KAG+ GL LT ANHVIL +PF+NP +E+QA+DR HR+ Q++ V
Sbjct: 784 LHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPV 843
Query: 1550 YVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLFGLNS 1603
V+R + K ++E+RIV +Q KK+ LV A+D + +++L ++EL +LFGLNS
Sbjct: 844 TVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENNPLSRLDKEELLYLFGLNS 897
>SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 963
Score = 272 bits (695), Expect = 4e-72
Identities = 208/717 (29%), Positives = 334/717 (46%), Gaps = 134/717 (18%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P EL +NLL QR+G+ WL E SS GG+LAD+MG+GKT+Q++ALL++ EP+ K
Sbjct: 350 PKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLS---EPRG--K 404
Query: 972 TTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQ 1031
TLVVAPV + WK+E ++ S ++L+ YD+VL SY
Sbjct: 405 PTLVVAPVVAIMQWKEEIDTHTNKALSTYLYY------GQARDISGEELSSYDVVLTSYN 458
Query: 1032 TLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQ 1091
+ S ++K ++G + + + L++Q+ EFYR+ILDEA
Sbjct: 459 VIESVYRKE-----RSGFRRKNGVVKEKSLLHQM---------------EFYRIILDEAH 498
Query: 1092 NIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPY------------ 1139
IK++ A+A C + +T + LSGTP+QN IGEL+SL+RFLR P+
Sbjct: 499 GIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKS 558
Query: 1140 ---------NKEAKFHSDI-------GAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLR 1183
N + H + +L + + Y + + A KKV LL+ IMLR
Sbjct: 559 LHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGY-EGPGKLAFKKVHSLLKHIMLR 617
Query: 1184 RTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYS 1243
RTK + D L LP + ++ + +E + YQ+L S+ K L Y+
Sbjct: 618 RTKLERADD---LGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYA 674
Query: 1244 SIXXXXXXXXQACLHSELVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNA 1303
+I Q H +LV + + T++
Sbjct: 675 NIFQLITRMRQMADHPDLV-------------------------------LASKRKTVDI 703
Query: 1304 VNACLDDMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSV 1363
N +++ C +C E + + + C H C C Y++ A +
Sbjct: 704 ENQ--ENIVCKICDE---VAQDAIESRCHHTFCRLCVTEYINAA------------GDGE 746
Query: 1364 NIPCLVC-RKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYK 1422
N+ C C ++ D A + + F + N SI + ID
Sbjct: 747 NVNCPSCFIPLSIDLSAPALEDFSEEKFKNASILN--------------------RIDMN 786
Query: 1423 SLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMS 1482
S + S K+E ++ + + + K ++FSQFT +++ H+ + G N ++ DG M+
Sbjct: 787 SWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLI-HWRLRKAGFNCVKLDGGMT 845
Query: 1483 SSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
R+A IE+F D N + L+S+KAG L LT A+ V + DP+WN V+ QAMDR HR
Sbjct: 846 PKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHR 905
Query: 1543 ISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLF 1599
I Q+R + V L I+ S+E +I+ELQ KK +++ +D + + +N+L +++ FLF
Sbjct: 906 IGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATIDQDE-KALNQLSVEDMQFLF 961
>At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1277
Score = 267 bits (682), Expect = 1e-70
Identities = 219/768 (28%), Positives = 346/768 (44%), Gaps = 180/768 (23%)
Query: 912 PNELTVNLLKHQRQGLRWL------VSMEKSSK--------------------------- 938
P+ LT NL +Q+Q L W+ + +EK+++
Sbjct: 609 PSTLTCNLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSIYLNIFSGE 668
Query: 939 ------------RGGLLADDMGLGKTVQSLALLMA----------------------NKP 964
RGG+LAD MGLGKTV ++AL++A N+
Sbjct: 669 ATIQFPTATQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRK 728
Query: 965 EPKSAIKT------TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWK 1018
E A+ T TL++ P+A+L WKDE +GG + +K
Sbjct: 729 EIHMALTTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKA---- 784
Query: 1019 DLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRN 1078
+A +D+VL +Y L S +K+ D S F+R
Sbjct: 785 -IASHDVVLTTYGVLTSAYKQ-----------------------------DMANSIFHRI 814
Query: 1079 DSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPP 1138
D +YR++LDEA IK+ KTQAAKA +SS RW L+GTP+QN + +LYSL+ FL + P
Sbjct: 815 D--WYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEP 872
Query: 1139 YNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTK-TSQIDGKPILQ 1197
+ A + I +KPY+ D R +K ++ +LR +MLRRTK T +G IL+
Sbjct: 873 WCNWAWWSKLI------QKPYENGDP---RGLKLIKAILRPLMLRRTKETRDKEGSLILE 923
Query: 1198 LPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACL 1257
LP ++ + E +FY AL +S+ + + + + Y++I Q C
Sbjct: 924 LPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCN 983
Query: 1258 HSELVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDMT----- 1312
H LV S A S + + + R L + QN + + + D+
Sbjct: 984 HPFLVM---SRADSQQYADLDSLAR--RFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSK 1038
Query: 1313 -CPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLVCR 1371
CP+C+E D VL C H +C +C + P+ C +CR
Sbjct: 1039 ECPICLESADDP---VLTPCAHRMCRECLL----TSWRSPSCGL-----------CPICR 1080
Query: 1372 KMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVE 1431
+ E IS D + + +D + K+ KES KV
Sbjct: 1081 TILKRTELISCPT-DSI----FRVDVV-----------------------KNWKESSKVS 1112
Query: 1432 MCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIE 1491
L ++K+ S + EK ++FSQ+T F ++L +++ G FLR+DG ++ R ++
Sbjct: 1113 ELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRR-GFEFLRFDGKLAQKGREKVLK 1171
Query: 1492 SFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYV 1551
F + ++L+S+KAG GL LT A+ V L DP+WNP VEEQA+ R HRI Q+R V+V
Sbjct: 1172 EFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFV 1231
Query: 1552 HRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLF 1599
R ++K +VE+R+ ++Q +K+ ++ A+ ++R +EL LF
Sbjct: 1232 RRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRSAR---LEELKMLF 1276
>At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1029
Score = 261 bits (668), Expect = 5e-69
Identities = 223/826 (26%), Positives = 363/826 (42%), Gaps = 225/826 (27%)
Query: 879 MTNIYNTADASSLRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSS- 937
+ NI D+S GLKE+ET P+ L L +Q+Q L W+ +EK +
Sbjct: 323 LDNIVGVGDSS-------GLKEMET--------PHTLLCELRPYQKQALHWMTQLEKGNC 367
Query: 938 --------------------------------------------KRGGLLADDMGLGKTV 953
RGG+LAD MGLGKTV
Sbjct: 368 TDEAATMLHPCWEAYCLADKRELVVYLNSFTGDATIHFPSTLQMARGGILADAMGLGKTV 427
Query: 954 QSLALLMANK-------------------------------------------PEPKSAI 970
+++LL+A+ E KS +
Sbjct: 428 MTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATKFLGFDKRLLEQKSVL 487
Query: 971 KT--TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLV 1028
+ L+V P+ +L WK E +G +K L++ D+V+
Sbjct: 488 QNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKL-----LSQSDVVIT 542
Query: 1029 SYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILD 1088
+Y L SEF S +N ++AV ++R++LD
Sbjct: 543 TYGVLTSEF------SQENSADHEGIYAV-----------------------RWFRIVLD 573
Query: 1089 EAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSD 1148
EA IKN K+Q + A + + RW L+GTPIQNN+ +LYSL+RFLRI P+ A ++
Sbjct: 574 EAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKL 633
Query: 1149 IGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTS-QIDGKPILQLPEKHLKESA 1207
+ +KP++ D +R +K VQ +L+ IMLRRTK+S +G+PIL LP +
Sbjct: 634 V------QKPFEEGD---ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIY 684
Query: 1208 NKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELV----- 1262
+L E +FY AL +S+ K + +E + Y+SI Q C H LV
Sbjct: 685 CELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGD 744
Query: 1263 --KIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDM------TCP 1314
+ + N S + ++GK + R G++ + V ++++ CP
Sbjct: 745 TAEYSDLNKLSKRFLSGKSSGLE---------REGKDVPSEAFVQEVVEELRKGEQGECP 795
Query: 1315 VCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLVCRKMN 1374
+C+E ++ VL C H LC +C AS+ NS + C VCR
Sbjct: 796 ICLEALE---DAVLTPCAHRLCRECL-----------LASW----RNSTSGLCPVCRNTV 837
Query: 1375 NDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDY-KSLKESKKVEMC 1433
+ +E I+ A ++ + +D K+ ES K+
Sbjct: 838 SKQELIT-----------------------------APTESRFQVDVEKNWVESSKITAL 868
Query: 1434 LDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESF 1493
L+ ++ + S + K ++FSQ+T F ++L + +N +F+R DG++S QR ++ F
Sbjct: 869 LEELEGLRSSGS--KSILFSQWTAFLDLLQIPLSRN-NFSFVRLDGTLSQQQREKVLKEF 925
Query: 1494 YQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHR 1553
+D + V+L+S+KAG G+ LT A++ + DP+WNP VEEQA+ R HRI Q +EV + R
Sbjct: 926 SEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRR 985
Query: 1554 LLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLF 1599
++K +VE+R+ +Q +K+ +++ A+ ++R +EL LF
Sbjct: 986 FIVKGTVEERMEAVQARKQRMISGALTDQEVRSAR---IEELKMLF 1028
>At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1056
Score = 260 bits (665), Expect = 1e-68
Identities = 228/790 (28%), Positives = 334/790 (41%), Gaps = 190/790 (24%)
Query: 917 VNLLKHQRQGLRWLVSMEKSSKR--GGLLADDMGLGKTVQSLALLMAN------------ 962
+N + Q+ L W+ E +S GG+LADD GLGKTV ++AL++
Sbjct: 299 LNTVVSQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKLKSKNSG 358
Query: 963 --------------------KPEPK----------SAIKT-------------------- 972
KPE K S IK
Sbjct: 359 NQEAEALDLDADDESENAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAA 418
Query: 973 -TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQ 1031
TL+V P +V+R W E I+ GG +LA+YD+V+ +Y
Sbjct: 419 GTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPI----ELAKYDVVMTTYA 474
Query: 1032 TLASEFKKHWPL--SWKNGEHQPDVH------AVDLKLMNQV---KSSDEYFSPFYRNDS 1080
+++E K PL +N E + + +++ K N V K S + DS
Sbjct: 475 IVSNEVPKQ-PLVDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDS 533
Query: 1081 E-----------FYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYS 1129
++RV+LDEAQ IKN +TQ A+ACC + + RW LSGTPIQN I +LYS
Sbjct: 534 SDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYS 593
Query: 1130 LIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQ 1189
RFL+ PY F I K P N + KK+Q +LRAIMLRRTK +
Sbjct: 594 YFRFLKYDPYAVYKSFCHQI------KGPISRNSLQ---GYKKLQAVLRAIMLRRTKGTL 644
Query: 1190 IDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXX 1249
+DG+PI+ LP K + S +E FY LES SR + K + Y++I
Sbjct: 645 LDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANILLML 704
Query: 1250 XXXXQACLHSELVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLD 1309
QAC H +LVK S++ VS+ + + V+
Sbjct: 705 LRLRQACDHPQLVKRYNSDSVGK-----------------VSEEAVKKLPKEDLVSLLSR 747
Query: 1310 DMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLV 1369
+ P+C D V+ CGH C QC Y+ G + T P
Sbjct: 748 LESSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYIT----------GDEDT----CPAPR 793
Query: 1370 CRKMNNDKEAISYQLFDQVNNLNYSI-DDLRLEYDKMVAEQKARLKNGYTIDYKSLKESK 1428
CR E +++ + + L + DDL + + K+ +NG S
Sbjct: 794 CR------EQLAHDVVFSKSTLRSCVADDLGCSSSEDNSHDKSVFQNGEF-------SSS 840
Query: 1429 KVEMCLDIIKKVTDSNTDE----------------------------------------- 1447
K++ LDI++ +++ T
Sbjct: 841 KIKAVLDILQSLSNQGTSNSTQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGG 900
Query: 1448 --KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLIS 1505
K +IFSQ+T +++ + +N + F R DG+MS R ++ F D + +VM++S
Sbjct: 901 PIKTIIFSQWTGMLDLVELSLIEN-SIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMS 959
Query: 1506 MKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIV 1565
+KAGN GL + A HVIL D +WNP E+QA+DR HRI Q R V V R+ IK +VEDRI+
Sbjct: 960 LKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRIL 1019
Query: 1566 ELQNKKKTLV 1575
LQ +K+ +V
Sbjct: 1020 ALQEEKRKMV 1029
>YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 790
Score = 259 bits (663), Expect = 2e-68
Identities = 215/737 (29%), Positives = 334/737 (45%), Gaps = 132/737 (17%)
Query: 891 LRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLG 950
LR++ LK V P+ +T+ LL Q +GL WL+S E+S GG+LAD+MG+G
Sbjct: 156 LRNVFTDLKNAPPYVPQRSKQPDGMTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMG 215
Query: 951 KTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENN 1010
KT+Q++ALLM + + S LVVAP L WK+E I+ G
Sbjct: 216 KTIQTIALLMNDLTKSPS-----LVVAPTVALMQWKNEIEQHTKGQLKIY--IYHG---- 264
Query: 1011 SSKFRSWKDLAEYDIVLVSYQTLASEFKK-HWPLSWKNGEHQPDVHAVDLKLMNQVKSSD 1069
+S+ KDL YD+VL +Y L S F+K ++ KNG L Q
Sbjct: 265 ASRTTDIKDLQGYDVVLTTYAVLESVFRKQNYGFRRKNG------------LFKQ----- 307
Query: 1070 EYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYS 1129
P ++ +FYRVILDEA NIK++++ A+A + + RW LSGTP+QN IGE+YS
Sbjct: 308 ----PSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYS 363
Query: 1130 LIRFLRIPPY-----------NKEAKF----HSDIGAVLNTKKPYDYN------------ 1162
LIRFL I P+ +K+ KF H D + + + +N
Sbjct: 364 LIRFLNINPFTKYFCTKCDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLKNIQKFGV 423
Query: 1163 DSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALE 1222
+ + +Q LL+ IMLRRTK + D L LP + + + +E + Y++L
Sbjct: 424 EGPGLESFNNIQTLLKNIMLRRTKVERADD---LGLPPRIVTVRRDFFNEEEKDLYRSLY 480
Query: 1223 SKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGESNAKSSKIINGKDFEK 1282
+ S+ K +E Y++I Q H +L
Sbjct: 481 TDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDL--------------------- 519
Query: 1283 DWRPLYFVSKRMGQNQATLNAVNACLDDMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEP 1342
V KR+ N DD+ +C D + + C H C C +
Sbjct: 520 -------VLKRLN---------NFPGDDIGVVICQLCNDEAEEPIESKCHHKFCRLCIKE 563
Query: 1343 YVDNAKLEPTASFGPKGTNSVNIPCLVCRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEY 1402
YV++ N+ + C VC L+ + LE
Sbjct: 564 YVESFM-----------ENNNKLTCPVCH-----------------IGLSIDLSQPALEV 595
Query: 1403 DKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEIL 1462
D + + +K + + + K + S K+E ++ + K+ + K ++FSQFT +++
Sbjct: 596 D-LDSFKKQSIVSRLNMSGK-WQSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLV 653
Query: 1463 GHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVI 1522
+K+ G ++ GSMS +QR I+ F + V L+S+KAG L L A+ V
Sbjct: 654 EWRLKR-AGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVF 712
Query: 1523 LADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPT 1582
+ DP+WNP VE Q+ DR HRI Q R V + R I+ S+E RI+ELQ KK +++ ++
Sbjct: 713 ILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATINQD 772
Query: 1583 QIREVNKLGRKELGFLF 1599
+ +++L +L FLF
Sbjct: 773 E-AAISRLTPADLQFLF 788
>At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1227
Score = 257 bits (657), Expect = 9e-68
Identities = 217/776 (27%), Positives = 352/776 (44%), Gaps = 142/776 (18%)
Query: 895 LEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKR--GGLLADDMGLGKT 952
L+ L + +E D L V+LL+HQR L W+ E S GG+LADD GLGKT
Sbjct: 521 LQDLSQHSSEASPPD---GVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKT 577
Query: 953 VQSLALLMANKPEPKSAIKT-------------------------------------TLV 975
V ++AL++ + P + TL+
Sbjct: 578 VSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTLI 637
Query: 976 VAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLAS 1035
V P +++R W DE ++ G S+ + +LA+YD+V+ +Y ++
Sbjct: 638 VCPTSLMRQWADELRKKVTLEAHLSVLVYHG----CSRTKDPHELAKYDVVITTYSLVSK 693
Query: 1036 EFKKHW---PLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQN 1092
+KH P+ + +G + QV ++RV+LDEAQ+
Sbjct: 694 --RKHMDCEPVEFLSGP------------LAQVS---------------WFRVVLDEAQS 724
Query: 1093 IKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAV 1152
IKN KTQA+ AC + + RW LSGTPIQN+I +LYS RFL+ PY+ F I
Sbjct: 725 IKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETI--- 781
Query: 1153 LNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEG 1212
K P E K +Q +L+ +MLRRTK + +DGKP++ LP K ++
Sbjct: 782 ---KNPISSYPGE---GYKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTK 835
Query: 1213 DELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGESNAKSS 1272
+E +FY LE SRD+ K+ E+ + Y +I QAC H LV S + S+
Sbjct: 836 EERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHPLLVS-SLSWSSSA 894
Query: 1273 KIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDMTCPVCMEQMDIDSMLVLNSCG 1332
+++ +EK L F+ R+ + A C +C + + + V++ CG
Sbjct: 895 EMVKKLPYEK----LTFLLHRLEASLAI------------CGIC--NVRLSTHAVVSLCG 936
Query: 1333 H-----CLCA-------QCFEPYVDNAKLEPTASFGPKGTNSVNIPC----LVCRKMNND 1376
H C+C QC Y LE ++ F + + + C + +D
Sbjct: 937 HVFCNQCICECLTRDNNQCPLSYC-KVGLEISSLFSRETLENAMLDLHKLDAPCDRTTSD 995
Query: 1377 KEAISYQLFDQVNNLNYSIDDLRLEYDKMVA----EQKARLKNGYTIDYKSLKESKKVEM 1432
+ NL ++ D + + + A + N ++ + +++++
Sbjct: 996 PVGSG----EPCENLPCGSSKIKAALDILQSLSRPQSPATVMNDVNQSSENGENNQQLDK 1051
Query: 1433 CLDIIKKVTDSNTD-------EKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQ 1485
+ S+ EK ++F+Q+T ++L +K + G+ + R+DG M+
Sbjct: 1052 SFSLPATPAKSSVGGVVNVAGEKAIVFTQWTKMLDLLEAGLKSS-GIQYRRFDGKMTVPA 1110
Query: 1486 RSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQ 1545
R A ++ F + VM++S+KA + GL + A HVI+ D +WNP E+QA+DR HRI Q
Sbjct: 1111 RDAAVQDFNTLPDVSVMIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQ 1170
Query: 1546 EREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQ--IREVNKLGRKELGFLF 1599
R V V R +K +VEDRI+ LQ KK+ +V A + RE + L ++L +LF
Sbjct: 1171 TRPVKVVRFTVKDTVEDRILALQQKKRKMVASAFGEHENGSRE-SHLSVEDLNYLF 1225
>At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1047
Score = 249 bits (636), Expect = 3e-65
Identities = 195/644 (30%), Positives = 298/644 (45%), Gaps = 80/644 (12%)
Query: 973 TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQT 1032
TL+V P +V+R W E ++ G S++ + +LAEYD+V+ +Y
Sbjct: 416 TLIVCPASVVRQWARELDEKVSEESKLSVLVYHG----SNRTKDPNELAEYDVVVTTYAI 471
Query: 1033 LASEFKKHWPLSW-KNGEHQPDVHAVDLKLMNQVK----------------------SSD 1069
+ +E + + +N E D + + N K SS+
Sbjct: 472 VTNEAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSSE 531
Query: 1070 EYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYS 1129
P + ++R++LDEAQ IKN +TQ A++CCT+ + RW LSGTPIQN I +LYS
Sbjct: 532 PDCGPLGKVG--WFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYS 589
Query: 1130 LIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQ 1189
RFLR PY F+S I K P N + KK+Q +LRAIMLRRTK +
Sbjct: 590 YFRFLRYDPYAVYKSFYSTI------KVPISRNSCQ---GYKKLQAVLRAIMLRRTKGTL 640
Query: 1190 IDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXX 1249
+DGKPI+ LP K + S E FY+ LE+ SR + K ++ Y++I
Sbjct: 641 LDGKPIINLPPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLL 700
Query: 1250 XXXXQACLHSELVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLD 1309
QAC H +LVK S+ GK E R L +A +N
Sbjct: 701 LRLRQACDHPQLVKRYNSDPV------GKVSEAAVRRL--------PREARSRLINRL-- 744
Query: 1310 DMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVD-----------NAKLEPTASFGPK 1358
+ + +C E + V+ CGH C +C Y+ +L F
Sbjct: 745 ESSSAICYECNEPPEKPVVTLCGHIFCYECVLEYITGDENTCPVPRCKQQLARDVVFSES 804
Query: 1359 GTNSVNIPCLVCRKM-NNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKAR----- 1412
+ C +N + +Q D ++ ++ D+ + + A+
Sbjct: 805 SLRNCTSDDSGCSSSHDNGLDRSVFQKRDFCSSKIKAVLDILQSLSQPDSPNSAQHGQMP 864
Query: 1413 -LKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLG 1471
Y D ++ E + + + S K +IFSQ+T +++ I ++ G
Sbjct: 865 SSSRPYDDDDVTIVEPMR-------LHSSSPSQGAVKTIIFSQWTGMLDLVELRILES-G 916
Query: 1472 LNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPF 1531
+ F R DG+MS + R ++ F + + +VML+S+KAGN GL + A HVIL D +WNP
Sbjct: 917 IEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHVILLDLWWNPT 976
Query: 1532 VEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLV 1575
E+QA+DR HRI Q R V V R+ IK +VEDRI++LQ +K+T+V
Sbjct: 977 TEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTMV 1020
Score = 57.0 bits (136), Expect = 2e-07
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 898 LKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKR--GGLLADDMGLGKTVQS 955
L+ + + DL P L+V L++HQ+ L W+ E SS GG+LADD GLGKTV +
Sbjct: 260 LQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILADDQGLGKTVST 319
Query: 956 LALLMANK 963
+AL++ K
Sbjct: 320 IALILKQK 327
>At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1287
Score = 248 bits (632), Expect = 7e-65
Identities = 198/660 (30%), Positives = 312/660 (47%), Gaps = 75/660 (11%)
Query: 973 TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQT 1032
TLVV P +V+R W DE ++ G SS+ + +LA+YD+V+ ++
Sbjct: 674 TLVVCPTSVMRQWADELHKKVTSEANLSVLVYHG----SSRTKDPHELAKYDVVVTTFSI 729
Query: 1033 LASEFKKHWPLSWKNGEHQPDVH-----------------AVDLKLMNQVKSSDEYFSPF 1075
++ E K PL E + VH D K K E+ S
Sbjct: 730 VSMEVPKQ-PLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGP 788
Query: 1076 YRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLR 1135
S ++RV+LDEAQ+IKN KTQ A+AC + + RW LSGTPIQN+I +LYS RFL+
Sbjct: 789 LAKVS-WFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 847
Query: 1136 IPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPI 1195
PY+ F S I K P N + +K+Q +L+ +MLRRTK S +DGKPI
Sbjct: 848 YDPYSSYVLFCSTI------KNPITRNP---VKGYQKLQAILKTVMLRRTKGSLLDGKPI 898
Query: 1196 LQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQA 1255
+ LP K ++ +E +FY LE++SR + ++ E+ + Y +I QA
Sbjct: 899 ISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQA 958
Query: 1256 CLHSELVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDMTCPV 1315
C H LV NG ++ W ++K+ Q+ A+L C +
Sbjct: 959 CDHPLLV-------------NG-EYSFTWESSVGLAKKQIQSDASL---------AICGI 995
Query: 1316 CMEQMDIDSMLVLNSCGHCLCAQC-FEPYVDNAKLEPTASFGPKGT-NSVNIPCLVCRKM 1373
C D V + CGH C QC +E ++ P A+ + T +S++ + M
Sbjct: 996 C---NDAPEDAVASVCGHVFCKQCIYERLTGDSNHCPFANCNVRLTISSLSSKTRLDDAM 1052
Query: 1374 NNDKEAISYQLFDQVN--NLNYSIDDLRLEYDKMVAEQKA-------RLKNGYTIDYKSL 1424
+ +E + + +L Y ++ + + + KA ++ S+
Sbjct: 1053 PDMQERATSNSLSPCSDEDLPYGSSKIKAALEILQSLPKAHDLTDSNQISENREYSGLSI 1112
Query: 1425 KESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSS 1484
K M +D+ KV EK ++FSQ+T +L + + + + R DG+MS +
Sbjct: 1113 TPVKNEGMSVDVPIKV----AGEKAIVFSQWTKMLNLLEASLVSS-HIQYRRLDGTMSVA 1167
Query: 1485 QRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRIS 1544
R ++ F VM++S+KA + GL + A HV++ D +WNP E+QA+DR HRI
Sbjct: 1168 ARDKAVQDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIG 1227
Query: 1545 QEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAM-DPTQIREVNKLGRKELGFLFGLNS 1603
Q R V V R +K +VEDRI+ LQ KK+ +V A + + + L ++L +LF +S
Sbjct: 1228 QTRPVTVVRFTVKDTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLFMADS 1287
Score = 56.6 bits (135), Expect = 3e-07
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 903 TEVEGEDLTPNE-LTVNLLKHQRQGLRWLVSMEKSSK--RGGLLADDMGLGKTVQSLALL 959
T+ E + P+ LTV LL+HQR L W+ E S GG+LADD GLGKTV ++AL+
Sbjct: 546 TQPNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALI 605
Query: 960 MANKPEPKSA 969
+ + +P A
Sbjct: 606 LKERSKPAQA 615
>CE11083 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1091
Score = 244 bits (622), Expect = 1e-63
Identities = 201/739 (27%), Positives = 326/739 (43%), Gaps = 120/739 (16%)
Query: 891 LRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLG 950
+R L E I E E D TP + L+ HQ+ GL W+ E + GG+LADDMGLG
Sbjct: 444 VRQLAEATHTIPDETELTD-TPKGFKLELMPHQKAGLTWMRWRETQPQPGGILADDMGLG 502
Query: 951 KTVQSLALLMANKP---------------EPKSAIKT--------TLVVAPVAVLRVWKD 987
KT+ ++L+ K E + +K TL+VAP +++ W
Sbjct: 503 KTLSMISLIAHQKAARRARREDGNDDKDKEKRKVVKEQGLIPSNGTLIVAPASLIHQWDA 562
Query: 988 EXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEF-KKHWPLSWK 1046
E G + R LA YD+V+ ++ +A+E +K S
Sbjct: 563 EIDRRLDDSVLSTYMFHGTKKQRDIDARR---LARYDVVITTFNLIANELIEKIRTKSKA 619
Query: 1047 NGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCT 1106
+ + + + V D + + RVILDEA IKN+++ A+KA C
Sbjct: 620 DDSSDGESDSNHTGIRRAVGKDDSVLAQIC-----WSRVILDEAHTIKNRQSLASKAVCR 674
Query: 1107 ISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSER 1166
+S+ RW LSGTPI NN+ +LYSL+RFLRI P++ + + I + KP
Sbjct: 675 LSAFSRWCLSGTPIHNNLWDLYSLVRFLRIRPFSDDKYWKESIMPM----KPI------- 723
Query: 1167 QRAMKKVQVLLRAIMLRRTK--TSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESK 1224
+V +L + ++LRRTK T + + ++QLP K+++ +L+GDE + Y+ +
Sbjct: 724 --MADRVNLLTKNLLLRRTKDQTCAVTNQKLVQLPPKNVEVHELELDGDEAQAYEIMMEA 781
Query: 1225 SRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGESNAKSSKIINGKDFEKDW 1284
++ KK+L+ + I
Sbjct: 782 AKKFVKKLLQDSNDMKNHGFIPRR------------------------------------ 805
Query: 1285 RPLYFVSKRMGQNQATLNAVNACLDDMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYV 1344
++R G+ N N D+ E+M ML+L C+ + V
Sbjct: 806 ------NRRAGKEGEVQNPFNFGPRDLAAGSNFEKMSCVLMLLLRLRQACVHFNITKTGV 859
Query: 1345 DNAKLEPTASFGPKGTNSVNIPCLVCRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDK 1404
D ++ + G N+ L +L ++ N+ D E DK
Sbjct: 860 D---MDAFSLIGGDNAEEANVDDL-------------NELLEKTMNMTLGNGD-NEERDK 902
Query: 1405 MVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGH 1464
A + + DY S K +E+ +I++K EK+VI SQ+T ++
Sbjct: 903 PRATTRI-----FDPDYLSCKIKNTLEIVENIMEK------KEKVVIVSQWTSVLNLIEI 951
Query: 1465 FIKKNLGLNFLRYDGSMSSSQRSACIESFYQD-NNYRVMLISMKAGNSGLTLTCANHVIL 1523
IK + G + G + R ++SF ++ RVML+S+ AG GL LT NH+++
Sbjct: 952 HIKSS-GFKYTSITGQVLVKDRQERVDSFNREKGGARVMLLSLAAGGVGLNLTGGNHLVM 1010
Query: 1524 ADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQ 1583
D WNP +E+QA DR +R+ Q+++V++HRL+ K ++E R+V LQ K L + +D
Sbjct: 1011 VDLHWNPALEQQAFDRIYRMGQKKDVFIHRLVTKGTIEQRVVMLQKDKVALASSVLDGNA 1070
Query: 1584 IREVNKLGRKELGFLFGLN 1602
R++NKL ++ LFGLN
Sbjct: 1071 TRKMNKLTTADIKMLFGLN 1089
>YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1169
Score = 237 bits (605), Expect = 1e-61
Identities = 193/717 (26%), Positives = 324/717 (44%), Gaps = 122/717 (17%)
Query: 935 KSSKRGGLLADDMGLGKTVQSLALLMA----------------------NKP------EP 966
K+ +GG+L+D+MGLGKTV + +L+++ N P +
Sbjct: 522 KTMIKGGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDIENTAVSDNLPSTWQDNKK 581
Query: 967 KSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIV 1026
A KTTL+V P+++L W +E ++ GG +S K K +V
Sbjct: 582 PYASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHE-VYYGGNVSSLKTLLTKTKTPPTVV 640
Query: 1027 LVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVI 1086
L +Y + +E+ KH G + V S FS FYR+I
Sbjct: 641 LTTYGIVQNEWTKH-----SKGRMTDE----------DVNISSGLFSV------NFYRII 679
Query: 1087 LDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFH 1146
+DE NI+N+ T +KA + +W L+GTPI N + +LYSL++FL + P+ + +
Sbjct: 680 IDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFLELDPWRQINYWK 739
Query: 1147 SDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTK-TSQIDGKPILQLPEKHLKE 1205
+ + +K ++A V +L ++LRRTK DGKP+++LP K +
Sbjct: 740 TFVSTPFESK--------NYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVVI 791
Query: 1206 SANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIG 1265
+ Y+ L K+ K + YS+I Q C H L+
Sbjct: 792 KRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIGSQ 851
Query: 1266 ESN----AKSSKIINGKDFEKDWRPLYFVSKRMGQ--NQATLNAV----------NACLD 1309
+ N +K++K++ + E D + VS+R ++ L+A+ N
Sbjct: 852 DENDEDLSKNNKLVTEQTVELD-SLMRVVSERFDNSFSKEELDAMIQRLKVKYPDNKSFQ 910
Query: 1310 DMTCPVC-MEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCL 1368
+ C +C E MD+D L CGH C +C Y++ + + ++ + C
Sbjct: 911 SLECSICTTEPMDLDKAL-FTECGHSFCEKCLFEYIEF-----------QNSKNLGLKCP 958
Query: 1369 VCRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESK 1428
CR ID RL + + + KN Y +S
Sbjct: 959 NCRN---------------------QIDACRL---LALVQTNSNSKNLEFKPYSPASKSS 994
Query: 1429 KVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEI----LGHFIKKNLGLNFLRYDGSMSSS 1484
K+ L ++ + DS+ E++VIFSQF+ + +I L H K++ ++DG +S
Sbjct: 995 KITALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVA-KIYKFDGRLSLK 1053
Query: 1485 QRSACIESF--YQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
+R++ + F + +++L+S+KAG GL LTCA+H + DP+W+P +E+QA+DR HR
Sbjct: 1054 ERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHR 1113
Query: 1543 ISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLF 1599
I Q V V R +I+ S+E++++ +Q KK+T + AMD T E K +E+ LF
Sbjct: 1114 IGQTNSVKVMRFIIQDSIEEKMLRIQEKKRT-IGEAMD-TDEDERRKRRIEEIQMLF 1168
>Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1009
Score = 219 bits (558), Expect = 3e-56
Identities = 164/616 (26%), Positives = 282/616 (45%), Gaps = 103/616 (16%)
Query: 961 ANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDL 1020
+ K + + +TTL++ P++VL W D+ ++ G + + R L
Sbjct: 466 SKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPD----RIREPALL 521
Query: 1021 AEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDS 1080
++ DIVL +Y L ++ + +H++
Sbjct: 522 SKQDIVLTTYNILTHDY---------GTKGDSPLHSI----------------------- 549
Query: 1081 EFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYN 1140
+ RVILDE I+N Q KA + S RW L+GTPIQN++ +L+SL+ FL++ P+
Sbjct: 550 RWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFI 609
Query: 1141 KEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPE 1200
+H I ++P D + ++++Q L++ I LRRTKTS+I GKP+L+LPE
Sbjct: 610 DREWWHRTI------QRPVTMGD---EGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660
Query: 1201 KHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSE 1260
+ + L +E + YQ+++++ R + Y+ + Q C H+
Sbjct: 661 RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720
Query: 1261 LVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDMTCPVCMEQM 1320
L+ +NA SS +G D ++ R ++ + + CLD +T P
Sbjct: 721 LL----TNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVP------ 770
Query: 1321 DIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLVCRKMNNDKEAI 1380
V+ C H C C + N +P A C +CR ND
Sbjct: 771 ------VITHCAHVFCKPCICQVIQNE--QPHAK------------CPLCR---ND---- 803
Query: 1381 SYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKV 1440
+ N L ++L + +E+K+ ++ S K+ + + +
Sbjct: 804 ----IHEDNLLECPPEELARD-----SEKKSDME---------WTSSSKINALMHALTDL 845
Query: 1441 TDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFY--QDNN 1498
N + K ++ SQFT F ++ +K + G F R DGSM+ +R I+ F + +
Sbjct: 846 RKKNPNIKSLVVSQFTTFLSLIEIPLKAS-GFVFTRLDGSMAQKKRVESIQCFQNTEAGS 904
Query: 1499 YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKM 1558
+ML+S+KAG GL L+ A+ V L DP WNP E+Q DRCHR+ Q++EV + + ++K
Sbjct: 905 PTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKD 964
Query: 1559 SVEDRIVELQNKKKTL 1574
SVE+ ++++QNKK+ L
Sbjct: 965 SVEENMLKIQNKKREL 980
>At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 881
Score = 216 bits (550), Expect = 2e-55
Identities = 195/761 (25%), Positives = 307/761 (39%), Gaps = 188/761 (24%)
Query: 919 LLKHQRQGLRWLVSMEKSSK----------------------------RGGLLADDMGLG 950
L HQ++GL WL+ EKS + RGG+ ADDMGLG
Sbjct: 231 LFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLRGGVFADDMGLG 290
Query: 951 KTVQSLALLM--------------------ANKPEPKS---------------------- 968
KT+ L+L+ +K E K
Sbjct: 291 KTLTLLSLIAFDRYGNASTSTPTEEPLDGEGDKIEKKGKKRGRGKSSESVTRKKLKTDDV 350
Query: 969 -----AIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEY 1023
+ KTTL+V P +V+ W + GG + +L +Y
Sbjct: 351 VGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVN-----ELMKY 405
Query: 1024 DIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFY 1083
DIVL +Y TLA E SW++ SP + E+
Sbjct: 406 DIVLTTYGTLAVEE------SWED-------------------------SPVKK--MEWL 432
Query: 1084 RVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEA 1143
R+ILDEA IKN Q ++ C + ++ RWA++GTPIQN +LYSL+ FLR P++ ++
Sbjct: 433 RIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKS 492
Query: 1144 KFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHL 1203
+ S I L ++ + ++QVL+ I LRRTK K ++ LP K +
Sbjct: 493 YWQSLIQRPLG---------QGNKKGLSRLQVLMATISLRRTKE-----KSLIGLPPKTV 538
Query: 1204 KESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVK 1263
+ +L +E + Y +E +++ + ++ + YS++ Q C L
Sbjct: 539 ETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDDMSLCP 598
Query: 1264 IGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDMTCPVCMEQMDID 1323
+ +S + + + + + G+ D CP+C+
Sbjct: 599 PELRSFTTSTSVEDVTDKPELLQKLVAALQDGE-------------DFDCPICISP---P 642
Query: 1324 SMLVLNSCGHCLCAQCFEPYVDNAK-LEPTASFGPKGTNSVNIPCLVCRKMNNDKEAISY 1382
+ +++ C H C C + +K L P ++ N P N D E
Sbjct: 643 TNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPDSSNTDGE---- 698
Query: 1383 QLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTD 1442
D KS +S KV L ++
Sbjct: 699 -------------------------------------DAKSSTKSSKVSALLSLLMASRQ 721
Query: 1443 SNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDN--NYR 1500
N + K V+FSQF +L +K G LR DG+M+ +R+ I F
Sbjct: 722 ENPNTKSVVFSQFRKMLLLLETPLKA-AGFTILRLDGAMTVKKRTQVIGEFGNPELTGPV 780
Query: 1501 VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSV 1560
V+L S+KA +G+ LT A+ V L DP+WNP VEEQAMDR HRI Q++EV + R++ + S+
Sbjct: 781 VLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSI 840
Query: 1561 EDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLFGL 1601
E+R++ELQ KKK L N A Q ++ ++ +++ L L
Sbjct: 841 EERVLELQQKKKNLANEAFKRRQKKDEREVNVEDVVALMSL 881
>7298963 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1061
Score = 200 bits (508), Expect = 2e-50
Identities = 195/754 (25%), Positives = 325/754 (42%), Gaps = 145/754 (19%)
Query: 890 SLRDLLEGLKEIE-TEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMG 948
SL+DL L+++ EV ED P L V+L+ HQ+ L W+ E+ RGG+LADDMG
Sbjct: 411 SLKDLHVSLEDLPGPEVLAED--PVGLKVSLMNHQKHALAWMSWRERKLPRGGILADDMG 468
Query: 949 LGKTVQSLALLMA---------------------NKPEPKSAIKT-------------TL 974
LGKT+ ++ ++A +K + + ++ TL
Sbjct: 469 LGKTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTL 528
Query: 975 VVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLA 1034
VV P ++LR W+ E G K+ L +YDIV+ +YQ +A
Sbjct: 529 VVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKY-----LRDYDIVVTTYQIVA 583
Query: 1035 SEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIK 1094
E K S F +R R+ILDEA ++
Sbjct: 584 REHK----------------------------SLSAVFGVKWR------RIILDEAHVVR 609
Query: 1095 NKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLN 1154
N K+Q++ A C + +RWAL+GTPIQN ++Y+L++FLR P++ L+
Sbjct: 610 NHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDD-----------LH 658
Query: 1155 TKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTS-QIDGKPILQLPEKHLKESANKLEGD 1213
T K + D++ ++ +L++++MLRRTK Q DGK + LP K L+ L+
Sbjct: 659 TWKKWI--DNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGK-LNSLPNKELRLIEISLD-- 713
Query: 1214 ELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGESNAKSSK 1273
K++ Y ++ LH + + N +S
Sbjct: 714 ----------------------KEEMNVYQTVMTYSRTLFAQFLHQRAERETDFNYRSDA 751
Query: 1274 IINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDMTCPVCMEQMDIDSMLVLNSCGH 1333
+ KD Y+ A D + + + Q+
Sbjct: 752 NKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQI------------- 798
Query: 1334 CLCAQCFEPYVDNAKL--EPTASFGPKGTNSVNIPCLVCRKMNNDKEAISYQLFDQVNNL 1391
C P + +A L E + + G ++S + ++N K AI+ D ++
Sbjct: 799 -----CCHPGLIDAMLDGEESQTMGDHSSDSDTPEIDLLAQLN--KLAITDTSTDGQQSV 851
Query: 1392 NYSIDD---LRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEK 1448
+ DD L + ++ K LK + + + S K+ M + I+K ++D+K
Sbjct: 852 ANAGDDGPPLLPDEARIAKASKNLLKRSNPV-FNLHRPSSKINMVIQILKTSILKSSDDK 910
Query: 1449 LVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNY-RVMLISMK 1507
++ SQ+T +IL + K+ G+ L +G++ R + F NN RV+L+S+
Sbjct: 911 AIVVSQWTSVLDILRDHLSKD-GVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLT 969
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
AG GL L ANH++L D WNP +E QA DR +R+ Q++ V +++ + +VE RI L
Sbjct: 970 AGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGL 1029
Query: 1568 QNKKKTLVNLAMDPTQIREVNKLGRKELGFLFGL 1601
Q+KK L + + T + +KL +L LFG+
Sbjct: 1030 QDKKLDLADGVL--TGAKVSSKLTIDDLKGLFGM 1061
>At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 833
Score = 192 bits (489), Expect = 3e-48
Identities = 148/542 (27%), Positives = 253/542 (46%), Gaps = 92/542 (16%)
Query: 1084 RVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEA 1143
R+ILDEA IK +++ A+A + +T+RWALSGTP+QN +GELYSLIRFL+I PY+
Sbjct: 356 RIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQIRPYSYYF 415
Query: 1144 KFHSD---IGAVLNTKKPYDYNDSER----------------------QRAMKKVQ-VLL 1177
D + V + P+ +++ R +RAM ++ +L
Sbjct: 416 CKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPITVYGSFGLGKRAMILLKHKVL 475
Query: 1178 RAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQ 1237
+ I+LRRTK + L LP + + + L+ E ++Y++L S+ + +E+
Sbjct: 476 KDILLRRTKLGRAAD---LALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNTYIEAGT 532
Query: 1238 KQGAYSSIXXXXXXXXQACLHSELVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQN 1297
Y+ I QA H LV S+ ++ +++ E++
Sbjct: 533 LMNNYAHIFDLLTRLRQAVDHPYLVVYSNSSGANANLVDENKSEQE-------------- 578
Query: 1298 QATLNAVNACLDDMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGP 1357
C +C + + V+ SC H C C + +AS G
Sbjct: 579 ---------------CGLCHDPAED---YVVTSCAHVFCKACLIGF--------SASLG- 611
Query: 1358 KGTNSVNIPCLVCRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGY 1417
+ C C K+ V+ + + + + + + + N
Sbjct: 612 ------KVTCPTCSKLLT------------VDWTTKADTEHKASKTTLKGFRASSILNRI 653
Query: 1418 TIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRY 1477
+D + S K+E + I+ + + + K ++FSQFT F +++ + + K G++ ++
Sbjct: 654 KLD--DFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTLGK-CGVSCVQL 710
Query: 1478 DGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAM 1537
GSM+ + R I F +D + RV L+S+KAG L LT A+HV + DP+WNP VE QA
Sbjct: 711 VGSMTMAARDTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQ 770
Query: 1538 DRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGF 1597
DR HRI Q + + V R +I+ +VE+RI+ LQ KK+ + + +Q + KL +++ F
Sbjct: 771 DRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQ-EAIGKLTEEDMRF 829
Query: 1598 LF 1599
LF
Sbjct: 830 LF 831
Score = 72.8 bits (177), Expect = 4e-12
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKS--- 968
P++L + LL++Q++ L W E+S GG+LAD+MG+GKT+Q+++L++A + ++
Sbjct: 132 PSDLIMPLLRYQKEFLAWATKQEQSVA-GGILADEMGMGKTIQAISLVLARREVDRAQFG 190
Query: 969 -AIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVL 1027
A TLV+ P+ + W +E G + + ++ K+ YD VL
Sbjct: 191 EAAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHG-----AKRAKNIKEFMNYDFVL 245
Query: 1028 VSYQTLASEFKKH 1040
+Y T+ SE++++
Sbjct: 246 TTYSTVESEYRRN 258
>SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 830
Score = 186 bits (471), Expect = 3e-46
Identities = 121/354 (34%), Positives = 185/354 (52%), Gaps = 40/354 (11%)
Query: 917 VNLLKHQRQGLRWLVSME---KSSKRGGLLADDMGLGKTVQSLALLMANK-PEPKSAIKT 972
+ LL HQ QGL WL S E KSS GG+LADDMGLGKT+Q +AL++++ P+ K +IK+
Sbjct: 231 IRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLPKKKHSIKS 290
Query: 973 TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQT 1032
TLVVAP+++++ W+ E + +S+++ K + EYD+V+ +YQ
Sbjct: 291 TLVVAPLSLIKQWESEVQTKSKLTAIVY--------HGASRYKLLKVIHEYDVVITTYQI 342
Query: 1033 LASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQN 1092
L SE+ H + D K + KS ++ + ++R+ILDEA
Sbjct: 343 LVSEWVSH------------NTTGTDGKSPTEAKSYEKKKPSLFA--FYWWRIILDEAHT 388
Query: 1093 IKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAV 1152
IKNK +++A ACC + RW L+GTP+QNN+ ELYSL++FL I P+N ++ + I
Sbjct: 389 IKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLP 448
Query: 1153 LNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKT-----SQIDGK-PILQLPEKHLKES 1206
L E K++++LL IMLRRTKT + DG L+L ++ + +
Sbjct: 449 L--------CQGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKRLVYKV 500
Query: 1207 ANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSE 1260
K E E +FY L + S + Y++I QAC H +
Sbjct: 501 ICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQ 554
Score = 133 bits (334), Expect = 3e-30
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1422 KSLKESKKVEMCLDIIKKVTDSNTD-----EKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
K+L +S K+ L I+ D K +IFSQFT F +I+ ++K G+ F+R
Sbjct: 641 KTLYKSSKIREILKILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDLHLRK-AGIGFVR 699
Query: 1477 YDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQA 1536
YDG M++ R ++ D+ +V+L S+K G GL LTCA+ VIL D +WNP +EEQA
Sbjct: 700 YDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQA 759
Query: 1537 MDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAM--DPTQIREVNKLGRKE 1594
+DR HRI Q R+V V++L+++ ++E++IVELQN K+ L A+ + KL +
Sbjct: 760 IDRVHRIGQRRDVLVYKLVVENTIEEKIVELQNLKRDLAKQALGDGKKSVFTSKKLTLND 819
Query: 1595 LGFLF 1599
L FLF
Sbjct: 820 LLFLF 824
>At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 638
Score = 160 bits (404), Expect = 2e-38
Identities = 129/457 (28%), Positives = 196/457 (42%), Gaps = 82/457 (17%)
Query: 895 LEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKR--GGLLADDMGLGKT 952
L+ LK+ +TE +DL P LTV L++HQ+ L W+ EK S+ GG+LADD GLGKT
Sbjct: 32 LQDLKQPKTE---KDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKT 88
Query: 953 VQSLALLMANKPEPKSAIKT--------TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIF 1004
+ +++L++ K + +S + TL+V P +V++ W E +
Sbjct: 89 ISTISLILLQKLKSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVH 148
Query: 1005 GGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQ 1064
G S + + ++A YD+V+ +Y + +E ++ P ++ D +
Sbjct: 149 HG----SHRTKDPTEIAIYDVVMTTYAIVTNEVPQN-----------PMLNRYDSMRGRE 193
Query: 1065 VKSSDEYFSPFYR--NDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQN 1122
P + RV+LDEA IKN +T AKAC ++ + RW L+GTPI+N
Sbjct: 194 SLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKN 253
Query: 1123 NIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIML 1182
+ +LYS RFLR PY FH I A ++ K + Y KK+Q +LR IML
Sbjct: 254 KVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGY---------KKLQAILRGIML 304
Query: 1183 RRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAY 1242
RRTK E FY+ LE SR K ++
Sbjct: 305 RRTK---------------------------EWSFYRKLELNSRWKFEEYAADGTLHEHM 337
Query: 1243 SSIXXXXXXXXQACLHSELVKIGESNAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLN 1302
+ + QAC H +LV + + K+ +G + F+
Sbjct: 338 AYLLVMLLRLRQACNHPQLVNGYSHSDTTRKMSDGVRVAPRENLIMFLDLLK-------- 389
Query: 1303 AVNACLDDMTCPVCMEQMDIDSMLVLNSCGHCLCAQC 1339
L TC VC D V+ CGH C +C
Sbjct: 390 -----LSSTTCSVC---SDPPKDPVVTLCGHVFCYEC 418
Score = 85.1 bits (209), Expect = 8e-16
Identities = 41/78 (52%), Positives = 56/78 (71%)
Query: 1502 MLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVE 1561
ML+S+KAGN GL + A+HVIL D +WNP E+QA+DR HRI Q R V V R+ IK +VE
Sbjct: 510 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVE 569
Query: 1562 DRIVELQNKKKTLVNLAM 1579
+RI+ L +K+ +V A+
Sbjct: 570 ERILTLHERKRNIVASAL 587
>CE14110 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1026
Score = 157 bits (396), Expect = 2e-37
Identities = 116/385 (30%), Positives = 181/385 (46%), Gaps = 57/385 (14%)
Query: 891 LRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLG 950
++ L + I E + D TP+ L V L+ HQ+ GLRWLV E GG+LADDMGLG
Sbjct: 362 MQQLADATHTIPAETDLTD-TPDGLLVELMPHQKAGLRWLVWREGQPHSGGILADDMGLG 420
Query: 951 KTVQSLALLMANKPEPKSAIKT-----------------------TLVVAPVAVLRVWKD 987
KT+ L+L++ K ++ ++ TL++AP +++ W+
Sbjct: 421 KTLSMLSLIVHQKAARRARKESGDNAADKEKRRVAKEEGLYPSNGTLIIAPASLIHQWEA 480
Query: 988 EXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKN 1047
E G + + K+LA YD+V+ +Y A+E + K
Sbjct: 481 EINRRLESDLLSVFMFHGTKKQRQIEP---KELARYDVVITTYTLAANELMEKKAAGSKK 537
Query: 1048 GEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSE-----FYRVILDEAQNIKNKKTQAAK 1102
E D + ++ + P +NDS + RVILDEA IKN+ +Q +K
Sbjct: 538 EEDSDD----------ESENEENPRRPAGKNDSPLARVAWSRVILDEAHAIKNRLSQCSK 587
Query: 1103 ACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYN 1162
A C +SS RW LSGTPI NN+ +LYSL+RFLRIP + + KF ++ + T
Sbjct: 588 AVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLRIPLFG-DRKFWAESIMPMKT------- 639
Query: 1163 DSERQRAMKKVQVLLRAIMLRRTKTSQ--IDGKPILQLPEKHLKESANKLEGDELEFYQA 1220
+V +L + +MLRRTK Q + K I+ L EK ++ ++ GDE Y
Sbjct: 640 -----GMADRVNLLTKNLMLRRTKDQQCALTNKKIVNLKEKKIEIHELEMVGDEANGYAI 694
Query: 1221 LESKSRDKAKKMLESKQKQGAYSSI 1245
+ ++ K+++ + Y I
Sbjct: 695 MMEAAQKLVKQIVTNTDDIQKYGQI 719
Score = 114 bits (286), Expect = 1e-24
Identities = 67/192 (34%), Positives = 111/192 (56%), Gaps = 16/192 (8%)
Query: 1420 DYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDG 1479
D+ S K +K +E+ +I++K EK+VI SQ+T ++ I+ G N+ G
Sbjct: 836 DFISCKMAKTLEVVREILEK------KEKVVIVSQWTSVLNLVEKHIQAG-GHNYTSITG 888
Query: 1480 SMSSSQRSACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMD 1538
+ R ++SF Q+ +VML+S+ AG GL L NH+I+ D WNP +E+QA D
Sbjct: 889 QVLVKDRQERVDSFNQEKGGAQVMLLSLTAGGVGLNLIGGNHLIMVDLHWNPALEQQACD 948
Query: 1539 RCHRISQEREVYVH--------RLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKL 1590
R +R+ Q++EV++H RL++K ++E R+++LQ KK L ++ T R++NKL
Sbjct: 949 RIYRMGQKKEVFIHRLNISKFCRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKLNKL 1008
Query: 1591 GRKELGFLFGLN 1602
++ LFGL+
Sbjct: 1009 TTADIRMLFGLD 1020
>Hs19923174 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1162
Score = 152 bits (383), Expect = 5e-36
Identities = 100/354 (28%), Positives = 175/354 (49%), Gaps = 58/354 (16%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P L V LL HQ+Q L WL+ E +GG+LADDMGLGKT+ +AL++ K + K K
Sbjct: 563 PAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEK 622
Query: 972 T--------------------TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNS 1011
TL++ P +++ WK+E G ++
Sbjct: 623 EKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSR 682
Query: 1012 SKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEY 1071
++ L+ YDIV+ +Y +A E + + + ++ +L + +
Sbjct: 683 ARV-----LSTYDIVITTYSLVAKEIPTN--------KQEAEIPGANLNV-------EGT 722
Query: 1072 FSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLI 1131
+P R + R+ILDEA N+KN + Q + A C + + RWA++GTPIQNN+ ++YSL+
Sbjct: 723 STPLLR--IAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLL 780
Query: 1132 RFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQID 1191
+FLR P+++ + S + D+ ++ +++ +L ++++LRRTK Q+D
Sbjct: 781 KFLRCSPFDEFNLWRSQV-------------DNGSKKGGERLSILTKSLLLRRTK-DQLD 826
Query: 1192 --GKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYS 1243
G+P++ LP++ + KL DE Y ++SR + L+ + +G S
Sbjct: 827 STGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQS 880
Score = 123 bits (308), Expect = 3e-27
Identities = 65/181 (35%), Positives = 108/181 (58%), Gaps = 2/181 (1%)
Query: 1421 YKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGS 1480
++ ++ES K+ L ++ + ++ +K VI SQ+T +++ +KK+ GL + DGS
Sbjct: 984 FEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKH-GLTYATIDGS 1042
Query: 1481 MSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRC 1540
++ QR +E+F +VMLIS+ AG GL LT NH+ L D WNP +E+QA DR
Sbjct: 1043 VNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRI 1102
Query: 1541 HRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLFG 1600
+R+ Q+++V +HR + + +VE++I++LQ KKK L + + V KL L LFG
Sbjct: 1103 YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSG-ESVTKLTLAHLRVLFG 1161
Query: 1601 L 1601
+
Sbjct: 1162 I 1162
>At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 678
Score = 128 bits (321), Expect = 8e-29
Identities = 99/383 (25%), Positives = 174/383 (44%), Gaps = 59/383 (15%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMA----NKPEPK 967
P +L + LLK+Q++ L W E S+ RGG+LAD+MG+GKT+Q+++L++A ++ + +
Sbjct: 127 PLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREVDRAKSR 186
Query: 968 SAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVL 1027
A+ TLV+ P L W DE G + ++ + L YD VL
Sbjct: 187 EAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHG-----PKRDKNVQKLMNYDFVL 241
Query: 1028 VSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVIL 1087
+ + +E++K + DE SP + ++ R+I+
Sbjct: 242 TTSPIVENEYRKD-------------------------EGVDETMSPLH--SIKWNRIIV 274
Query: 1088 DEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRI----PPYNKEA 1143
DEA +IKN+ ++ AKA + +T+RWALSGTP+QN++ ELYSL+ + + Y A
Sbjct: 275 DEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYSLVSYSFLNFFYSTYASFA 334
Query: 1144 KFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKP---ILQLPE 1200
H+ I N V+ L+ +L + +I+ P I+Q+
Sbjct: 335 FRHTHITFARNV----------------TVKFLIGGNILPLSIPVRIENVPAVLIMQINT 378
Query: 1201 KHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSE 1260
+ + L E +FY++L S+ +++ Y+ I QA H
Sbjct: 379 SLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPY 438
Query: 1261 LVKIGESNAKSSKIINGKDFEKD 1283
LV + ++ +++ EK+
Sbjct: 439 LVSYSSPSGANANLLDANKNEKE 461
Score = 127 bits (319), Expect = 1e-28
Identities = 65/181 (35%), Positives = 113/181 (61%), Gaps = 1/181 (0%)
Query: 1419 IDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYD 1478
I+ K S K+E + I+ + + + K ++FSQFT F +++ + + K+ G++ ++
Sbjct: 498 INLDDFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKS-GVSCVQLV 556
Query: 1479 GSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMD 1538
GSMS + + A +++F ++ + RV+L+S++AG L LT A+HV + DP+WNP VE QA D
Sbjct: 557 GSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQD 616
Query: 1539 RCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFL 1598
R HRI Q + V V R +++ +VE++I+ LQ KK+ L + ++ V KLG ++ L
Sbjct: 617 RIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQKLGEDDIKSL 676
Query: 1599 F 1599
F
Sbjct: 677 F 677
>SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 944
Score = 124 bits (312), Expect = 9e-28
Identities = 77/201 (38%), Positives = 116/201 (57%), Gaps = 9/201 (4%)
Query: 1390 NLNYSIDDLRLEYD---KMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTD 1446
N Y +D+ + D +A+Q L + + + K +S KV+ ++KK S +
Sbjct: 725 NPQYIFEDMEVMSDFELHKLADQYRHL-HPFALKGKPWMDSAKVKKLCSLLKK---SRPN 780
Query: 1447 EKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISM 1506
E+++IFSQFT +IL ++ L L FLR DGS R I+ F+ + NY+V L+S
Sbjct: 781 ERILIFSQFTQVLDIL-EYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLST 839
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
K+G G+ LTCAN VIL D +NPF + QA DR HR+ Q R V+V+RL+ K ++E+ I
Sbjct: 840 KSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRR 899
Query: 1567 LQNKKKTL-VNLAMDPTQIRE 1586
L N K TL +L D +I++
Sbjct: 900 LANTKLTLESSLTTDSEKIQK 920
>SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 922
Score = 112 bits (280), Expect = 5e-24
Identities = 62/168 (36%), Positives = 97/168 (56%), Gaps = 8/168 (4%)
Query: 1415 NGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNF 1474
N + + + ++ KV ++ ++ +++V+FSQFT +IL + K+L L F
Sbjct: 748 NSFQLKDEPWMDATKVRKLKKLLTNAVENG--DRVVLFSQFTQVLDIL-QLVMKSLNLKF 804
Query: 1475 LRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEE 1534
LR+DGS R I+ FY D + V L+S KAG G+ L CAN VIL D +NPF +
Sbjct: 805 LRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGGFGINLACANMVILYDVSFNPFDDL 864
Query: 1535 QAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPT 1582
QA DR HR+ Q++EV V++ ++K ++E+ I L N K +A+D T
Sbjct: 865 QAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAK-----IALDAT 907
Score = 70.5 bits (171), Expect = 2e-11
Identities = 75/289 (25%), Positives = 127/289 (42%), Gaps = 60/289 (20%)
Query: 917 VNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLA---LLMANKPEPKSAIKTT 973
+ L +Q G+ WL + + K G+LAD+MGLGKT Q++A LLM K+
Sbjct: 385 IKLQDYQIIGINWLYLLYEL-KLAGILADEMGLGKTCQTIAFFSLLM-----DKNINGPH 438
Query: 974 LVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFR----SWKDLAEYDIVLVS 1029
LV+AP + + W E ++ G + + R S KD Y+++L +
Sbjct: 439 LVIAPASTMENWLREFAKFCPKLKIE---LYYGSQVEREEIRERINSNKD--SYNVMLTT 493
Query: 1030 YQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDE 1089
Y+ A+ A L L NQ +F + DE
Sbjct: 494 YRLAATS------------------KADRLFLRNQ----------------KFNVCVYDE 519
Query: 1090 AQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDI 1149
+KN+ ++ + +I + FR L+GTP+QNN+ EL SL+ F+ ++ K
Sbjct: 520 GHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVFDYGLKSLD-- 577
Query: 1150 GAVLNTKKPYDYNDSER----QRAMKKVQVLLRAIMLRRTKTSQIDGKP 1194
V+ T K +D ER ++ + + ++++ +LRR K+ +D P
Sbjct: 578 --VIFTMKKSPESDFERALLSEQRVSRAKMMMAPFVLRRKKSQVLDALP 624
>YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1131
Score = 104 bits (260), Expect = 1e-21
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 2/171 (1%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
Y + +S K++ ++K + + EK++IFS FT +IL + L FLR
Sbjct: 938 YQLHNDEWMQSGKIDALKKLLKTII-VDKQEKVLIFSLFTQVLDIL-EMVLSTLDYKFLR 995
Query: 1477 YDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQA 1536
DGS + R I+ FY+D + + ++S KAG G+ L CAN+VI+ D +NP + QA
Sbjct: 996 LDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQA 1055
Query: 1537 MDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREV 1587
DR HR+ Q +EV + L+ K S+E++I +L K L + + + ++V
Sbjct: 1056 ADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDV 1106
Score = 72.8 bits (177), Expect = 4e-12
Identities = 82/342 (23%), Positives = 141/342 (40%), Gaps = 63/342 (18%)
Query: 917 VNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLA----LLMANKPEPKSAIKT 972
++L +Q+ G+ WL ++ +K +LADDMGLGKT Q ++ L N+P P
Sbjct: 570 ISLKDYQQTGINWL-NLLYQNKMSCILADDMGLGKTCQVISFFAYLKQINEPGPH----- 623
Query: 973 TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSW--KDLAEYDIVLVSY 1030
LVV P + L W E + G + R ++ +YD+++ +Y
Sbjct: 624 -LVVVPSSTLENWLREFQKFAPALKIEP---YYGSLQEREELRDILERNAGKYDVIVTTY 679
Query: 1031 QTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEA 1090
A ++Y F +N + F V+ DE
Sbjct: 680 NLAAG---------------------------------NKYDVSFLKNRN-FNVVVYDEG 705
Query: 1091 QNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPY-NKEAKFHSDI 1149
+KN ++ I + FR L+GTP+QNN+ EL SL+ F+ + +K+ F +
Sbjct: 706 HMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLFISKKESFDAIF 765
Query: 1150 -GAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESAN 1208
T ++N Q A+ + + +++ +LRR K + + LP KH
Sbjct: 766 KQRAKTTDDNKNHNPLLAQEAITRAKTMMKPFILRRRK-----DQVLKHLPPKHTHIQYC 820
Query: 1209 KLEGDELEFYQ-----ALESKSRDKAKKM-LESKQKQGAYSS 1244
+L + + Y LE K K ++ ++K+K SS
Sbjct: 821 ELNAIQKKIYDKEIQIVLEHKRMIKDGELPKDAKEKSKLQSS 862
>SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1284
Score = 102 bits (255), Expect = 4e-21
Identities = 60/174 (34%), Positives = 100/174 (56%), Gaps = 4/174 (2%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT+ +S K+ + +++ K+ + + ++++FSQFT +IL + L ++++R
Sbjct: 913 YTLKDDPWMDSGKIRVLKELLPKMKEEGS--RILLFSQFTQMLDILEQVLD-TLKISYVR 969
Query: 1477 YDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQA 1536
DGS R I+ F+++ + V L+S KAG G+ L CAN VIL D +NPF + QA
Sbjct: 970 LDGSTQVEVRQDIIDQFHKEEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQA 1029
Query: 1537 MDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTL-VNLAMDPTQIREVNK 1589
DR HR+ Q REV V RL+ ++E+ I +L N K L ++L+ D E+ +
Sbjct: 1030 EDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKDREEIGE 1083
Score = 71.2 bits (173), Expect = 1e-11
Identities = 71/300 (23%), Positives = 122/300 (40%), Gaps = 48/300 (16%)
Query: 917 VNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVV 976
V L +Q G+ WL + + K G+LAD+MGLGKT Q +A + LVV
Sbjct: 548 VQLKSYQLVGVNWLHLLYQQ-KLSGILADEMGLGKTCQVVAFFALLLEQGHHG--PHLVV 604
Query: 977 APVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAE--YDIVLVSYQTLA 1034
P + L W E + G + + R + E YDI++ +YQ
Sbjct: 605 VPSSTLENWLRELARFCPSLRVEP---YYGSQQERANIREAIEENEIKYDILVTTYQ--- 658
Query: 1035 SEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIK 1094
L+ N E + + F + DE +K
Sbjct: 659 --------LATNNKEDRS-----------------------FLKHQNFDVCVYDEGHYLK 687
Query: 1095 NKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLN 1154
N+ ++ K +++ FR L+GTP+QNN+ EL SL+ F+ ++ + D+ +
Sbjct: 688 NRMSERYKHLMNLNANFRLLLTGTPLQNNLKELVSLLAFILPNMFDSDM---DDLDVIFK 744
Query: 1155 TKKPYDYNDSE---RQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLE 1211
K D + + ++ + + + ++ +LRR K ++ P +H K S N+LE
Sbjct: 745 AKPTADADIEQALLSKQRISRAKTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLE 804
>YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1514
Score = 102 bits (254), Expect = 5e-21
Identities = 100/392 (25%), Positives = 165/392 (41%), Gaps = 74/392 (18%)
Query: 893 DLLEGLKEIETEVEGEDLT------PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADD 946
D+ + ++ ET+V+ E L+ P+ L NL +Q+QGL WL S+ ++ G+LAD+
Sbjct: 664 DIKDVEEDAETKVQEEQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLY-NNHTNGILADE 722
Query: 947 MGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGG 1006
MGLGKT+Q+++LL E K L+V P +VL W E +G
Sbjct: 723 MGLGKTIQTISLLAYLACE-KENWGPHLIVVPTSVLLNW--EMEFKRFAPGFKVLTYYGS 779
Query: 1007 GENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVK 1066
+ K + W + + +VSYQ + D H+ K
Sbjct: 780 PQQRKEKRKGWNKPDAFHVCIVSYQLVVQ-----------------DQHSFKRK------ 816
Query: 1067 SSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGE 1126
+ ++LDEA NIKN ++ +A ++ R L+GTP+QNN+ E
Sbjct: 817 --------------RWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAE 862
Query: 1127 LYSLIRFLRIPPYNKEAK--------------FHSDIGAVLNTKKPYDYNDSERQRAMKK 1172
L+SL+ FL +P + K F + ++ T + + D E ++ + K
Sbjct: 863 LWSLLYFL-MPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFG-QDKETKKTVAK 920
Query: 1173 VQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKM 1232
+ +LR +LRR K Q+P K+ KL + Y S+++ KA
Sbjct: 921 LHQVLRPYLLRRLKADVEK-----QMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKA--- 972
Query: 1233 LESKQKQGAYSSIXXXXXXXXQACLHSELVKI 1264
G + SI + C H L ++
Sbjct: 973 ---TLASGNFMSIVNCLMQLRKVCNHPNLFEV 1001
Score = 93.2 bits (230), Expect = 3e-18
Identities = 46/151 (30%), Positives = 88/151 (57%), Gaps = 3/151 (1%)
Query: 1429 KVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSA 1488
K++ +++++ D+ + +IF+Q T ++L F+ + G ++R DG+ R
Sbjct: 1247 KLQKLAILLQQLKDNG--HRALIFTQMTKVLDVLEQFLNYH-GYLYMRLDGATKIEDRQI 1303
Query: 1489 CIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQERE 1548
E F D+ V ++S ++G G+ LT A+ VI D WNP +++Q DRCHRI Q R+
Sbjct: 1304 LTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRD 1363
Query: 1549 VYVHRLLIKMSVEDRIVELQNKKKTLVNLAM 1579
V+++R + + ++E I++ N+K+ L N+ +
Sbjct: 1364 VHIYRFVSEHTIESNILKKANQKRQLDNVVI 1394
>Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 2971
Score = 99.8 bits (247), Expect = 3e-20
Identities = 49/133 (36%), Positives = 84/133 (62%), Gaps = 1/133 (0%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMK 1507
+++IF+Q T ++L F+ + G +LR DGS QR A +E F D ++S +
Sbjct: 1802 RVLIFTQMTRMLDVLEQFLTYH-GHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTR 1860
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
+G G+ LT A+ V+ D WNP ++ QA DRCHRI Q R+V+++RL+ + +VE+ I++
Sbjct: 1861 SGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKK 1920
Query: 1568 QNKKKTLVNLAMD 1580
N+K+ L ++A++
Sbjct: 1921 ANQKRMLGDMAIE 1933
Score = 89.0 bits (219), Expect = 6e-17
Identities = 78/293 (26%), Positives = 132/293 (44%), Gaps = 52/293 (17%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P L L ++Q GL WLV+M + K G+LAD+MGLGKT+Q+++LL A+ K
Sbjct: 414 PLLLRGQLREYQHIGLDWLVTMYEK-KLNGILADEMGLGKTIQTISLL-AHLACEKGNWG 471
Query: 972 TTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQ 1031
L++ P +V+ W+ E +G + K + W + + + SY+
Sbjct: 472 PHLIIVPTSVMLNWEMELKRWCPSFKILTY--YGAQKERKLKRQGWTKPNAFHVCITSYK 529
Query: 1032 TLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQ 1091
+ + + +W+ +ILDEAQ
Sbjct: 530 LVLQDHQAFRRKNWRY-------------------------------------LILDEAQ 552
Query: 1092 NIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGA 1151
NIKN K+Q ++ +S R L+GTP+QN++ EL+SL+ FL + +F
Sbjct: 553 NIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSN 612
Query: 1152 VLN--TKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKH 1202
L + +YN+ +K++ +LR +LRR K +D + Q+P+K+
Sbjct: 613 PLTGMIEGSQEYNEG----LVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 656
>CE11450 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 518
Score = 99.8 bits (247), Expect = 3e-20
Identities = 49/133 (36%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Query: 1471 GLNFLRYDGSMSSSQRSACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWN 1529
G + G ++ R ++SF Q+ + ML+S+ AG GL L NH+I+ D WN
Sbjct: 379 GHGYTSITGEVAIKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNLIGGNHLIMVDLHWN 438
Query: 1530 PFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNK 1589
P +E+QA DR +R+ Q++EV++HRL++K ++E R++ LQ KK L ++ + R +NK
Sbjct: 439 PALEQQACDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLEGSATRGMNK 498
Query: 1590 LGRKELGFLFGLN 1602
L ++ LFGL+
Sbjct: 499 LTNSDIRTLFGLD 511
Score = 88.6 bits (218), Expect = 7e-17
Identities = 68/217 (31%), Positives = 98/217 (44%), Gaps = 32/217 (14%)
Query: 911 TPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAI 970
TP+ V+L+ HQ+ GL WL+ E GG+L DMGLGKT+ ++L++ K K+
Sbjct: 136 TPDGFLVDLMPHQKAGLCWLLWRESQPHSGGILGGDMGLGKTLSMISLIVHQKAARKTRK 195
Query: 971 KT-TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVS 1029
+AP +++ W+ E G + + K
Sbjct: 196 DAGDDAIAPESLVHHWEAEIARRLKQDLLSVLVYHGNRRHINPK---------------- 239
Query: 1030 YQTLASEFKKHWPLSWK-NGEHQPDVHAVDLKLMNQV-KSSDEYFSPFYRNDSEFYRVIL 1087
+ KKH L + EH P KL +V +D+ SP R + VIL
Sbjct: 240 ------DLKKHIELDYDLEDEHNPCS-----KLRPRVCPKADKNSSPLARIAWSY--VIL 286
Query: 1088 DEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNI 1124
DEA IKN+ Q ++A C IS+ RW LSGTPI NN+
Sbjct: 287 DEAHIIKNRNAQCSEAACKISAFSRWCLSGTPIHNNM 323
>At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1496
Score = 99.4 bits (246), Expect = 4e-20
Identities = 94/369 (25%), Positives = 157/369 (42%), Gaps = 61/369 (16%)
Query: 911 TPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAI 970
TP L ++Q +GL+WLV+ + G +LAD+MGLGKT+Q++A L A+ E K+
Sbjct: 578 TPELFKGTLKEYQMKGLQWLVNCYEQGLNG-ILADEMGLGKTIQAMAFL-AHLAEEKNIW 635
Query: 971 KTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGG-------ENNSSKFRSWKDLAEY 1023
LVVAP +VL W DE + GG N + R ++ A +
Sbjct: 636 GPFLVVAPASVLNNWADEISRFCPDLKTLP---YWGGLQERTILRKNINPKRMYRRDAGF 692
Query: 1024 DIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFY 1083
I++ SYQ L ++ K + W+
Sbjct: 693 HILITSYQLLVTDEKYFRRVKWQ------------------------------------- 715
Query: 1084 RVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEA 1143
++LDEAQ IK+ + K + + R L+GTPIQNN+ EL++L+ F+ ++
Sbjct: 716 YMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHD 775
Query: 1144 KFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHL 1203
+F+ + + +E Q + ++ +L+ MLRR K + +L K
Sbjct: 776 QFNEWFSKGIENHAEHGGTLNEHQ--LNRLHAILKPFMLRRVKKDVVS-----ELTTKTE 828
Query: 1204 KESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQ---ACLHSE 1260
KL + FYQA+ K++ ++ +S + Q + Q C H E
Sbjct: 829 VTVHCKLSSRQQAFYQAI--KNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPE 886
Query: 1261 LVKIGESNA 1269
L + E ++
Sbjct: 887 LFERNEGSS 895
Score = 77.0 bits (188), Expect = 2e-13
Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 1422 KSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSM 1481
K L +S K++ ++K++ N ++++F+Q T IL ++ +LR DGS
Sbjct: 1200 KLLTDSGKLQTLDILLKRLRAGN--HRVLLFAQMTKMLNILEDYMNYRK-YKYLRLDGSS 1256
Query: 1482 SSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCH 1541
+ R + F ++ V L+S +AG G+ LT A+ VI + WNP ++ QAMDR H
Sbjct: 1257 TIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAH 1316
Query: 1542 RISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKEL 1595
R+ Q ++ +VE++I+ ++K T+ L M ++ + LG ++
Sbjct: 1317 RLGQTKD---------ETVEEKILHRASQKNTVQQLVMTGGHVQGDDFLGAADV 1361
>7298962 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 965
Score = 99.4 bits (246), Expect = 4e-20
Identities = 53/187 (28%), Positives = 109/187 (57%), Gaps = 3/187 (1%)
Query: 1403 DKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEIL 1462
D++ + + +L N ++ ++ S K++M +D ++++ + T++K+++ SQ+ + I+
Sbjct: 765 DQLDSARALKLLNPQNPIFQFIRPSAKLKMVIDKLEELL-TGTNDKIIVTSQWVSYLAIV 823
Query: 1463 GHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVI 1522
++ +L L ++G +++ +R + F +N RV+L+S+ AG GL L ANH++
Sbjct: 824 RKRLQ-DLSWETLDFNGQLTAKEREIVLRDFNANNEKRVLLLSLTAGGVGLNLNVANHML 882
Query: 1523 LADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPT 1582
+ D WNP +E QA DR +R Q + +++R + + +VE RI LQ+ K + + + P
Sbjct: 883 IVDLHWNPQLERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEIAKVVL-PE 941
Query: 1583 QIREVNK 1589
+ EV K
Sbjct: 942 EGGEVTK 948
Score = 79.3 bits (194), Expect = 4e-14
Identities = 64/268 (23%), Positives = 112/268 (40%), Gaps = 53/268 (19%)
Query: 973 TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGG--ENNSSKFRSWKDLAEYDIVLVSY 1030
TLVV P++V+ W E G E FRS YD+V+ SY
Sbjct: 392 TLVVCPMSVMCQWAHEVASKVAQNAIRVLTFHGPNRHEIGIEAFRS------YDLVITSY 445
Query: 1031 QTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEA 1090
+ +E K++ G P F+ ++ RVILDEA
Sbjct: 446 NLVVNELKRY-------GNTSP------------------LFAVYWN------RVILDEA 474
Query: 1091 QNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIG 1150
I+N KT + C + + WAL+GTP+QN ++++L+RF+ +P + ++ ++
Sbjct: 475 HIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDVFALLRFVNVPNFQDLQQWKKNL- 533
Query: 1151 AVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKL 1210
+E +++ +++ +MLRRTK + LP ++ +L
Sbjct: 534 -------------NESMLGHRRLNFIIKPLMLRRTKQKLQASGDMPALPSLKIELICVQL 580
Query: 1211 EGDELEFYQALESKSRDKAKKMLESKQK 1238
E+ YQ L + S+ + L ++K
Sbjct: 581 SKTEMAVYQILSAISKKIFTQFLLQREK 608
Score = 60.5 bits (145), Expect = 2e-08
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 869 YKTRIDHSLRMTNIYNTADASSLRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLR 928
Y+ + +H+ + + SL+ L E ++ ++ + P L V LLKHQ+ L+
Sbjct: 180 YRQKANHTAAQFYQHKSNIIDSLKTLYEPIQP-RPAIDDLEKQPALLLVRLLKHQQSCLK 238
Query: 929 WLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANK 963
W+ E+ GG+LADDMGLGKT+ +AL++A++
Sbjct: 239 WMQFRERQKISGGILADDMGLGKTLSMIALILASE 273
>At5g44800 [R] KOG0383 Predicted helicase
Length = 2228
Score = 99.0 bits (245), Expect = 5e-20
Identities = 61/177 (34%), Positives = 99/177 (55%), Gaps = 7/177 (3%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLG-LNFLRYDGSMS 1482
+K S K+ + ++K + +++IFSQ T +IL ++ G F R DGS++
Sbjct: 986 IKASAKLTLLHSMLKVLHKEG--HRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVA 1043
Query: 1483 SSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
+ R A I F QD N V L+S +A G+ L A+ VI+ D +NP + QAM+R HR
Sbjct: 1044 VADRQAAIARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1103
Query: 1543 ISQEREVYVHRLLIKMSVEDRIVELQNKKKTL----VNLAMDPTQIREVNKLGRKEL 1595
I Q + + V+RL+++ SVE+RI++L KK L VN + + ++ + G +EL
Sbjct: 1104 IGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEFEDILRWGTEEL 1160
Score = 70.1 bits (170), Expect = 3e-11
Identities = 92/419 (21%), Positives = 167/419 (38%), Gaps = 78/419 (18%)
Query: 873 IDHSLRMTNIYNTADASSLRDLLEGLKEIETEVEGEDLT----PNELTVN-LLKHQRQGL 927
+ HS + ++++ + +L K T GE +T P EL L HQ + L
Sbjct: 627 LKHSSHLIDLFHQYEQKTLE---RNSKGNPTRERGEVVTLTEQPQELRGGALFAHQLEAL 683
Query: 928 RWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAVL----- 982
WL SK +LAD+MGLGKTV + A L + E A + LV+ P++ +
Sbjct: 684 NWLRRCWHKSKNV-ILADEMGLGKTVSASAFLSSLYFEFGVA-RPCLVLVPLSTMPNWLS 741
Query: 983 --RVWKDEXXXXXXXXXXXXXXIFGGGE---NNSSKFRSWKDLAEYDIVLVSYQTLASEF 1037
+W I E NS+ +++++L +Y+ + ++
Sbjct: 742 EFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTSYKFNVLLTTYEMVLADS 801
Query: 1038 KKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKK 1097
+ W+ +++DE +KN +
Sbjct: 802 SHLRGVPWEV-------------------------------------LVVDEGHRLKNSE 824
Query: 1098 TQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKK 1157
++ T S R L+GTP+QNNIGE+Y+L+ FL+ + + F ++
Sbjct: 825 SKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFE---------ER 875
Query: 1158 PYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEF 1217
+D +E+ +KK L+ MLRR K + +P K + +L + E+
Sbjct: 876 FHDLTSAEKVEELKK---LVAPHMLRRLKKDAMQ-----NIPPKTERMVPVELTSIQAEY 927
Query: 1218 YQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGESNAKSSKIIN 1276
Y+A+ +K+ ++L + K A S+ + C H L+ E + S + ++
Sbjct: 928 YRAMLTKN----YQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLH 982
>Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1026
Score = 98.2 bits (243), Expect = 9e-20
Identities = 61/190 (32%), Positives = 107/190 (56%), Gaps = 6/190 (3%)
Query: 1397 DLRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFT 1456
++ +++ V ++ R N + +D + +S K + I+ ++ +++V+FSQFT
Sbjct: 823 EVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKG--DRVVLFSQFT 880
Query: 1457 MFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLT 1516
M +IL +K + +LR DG S+R I+ F D + V L+S KAG G+ LT
Sbjct: 881 MMLDILEVLLKHHQH-RYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLT 939
Query: 1517 CANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVN 1576
AN VIL D NP+ ++QA DRCHR+ Q +EV V +L+ + ++E+ ++++ +K +
Sbjct: 940 SANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQK---LK 996
Query: 1577 LAMDPTQIRE 1586
L D T + E
Sbjct: 997 LEQDMTTVDE 1006
>CE23294 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 540
Score = 97.4 bits (241), Expect = 2e-19
Identities = 95/378 (25%), Positives = 159/378 (41%), Gaps = 72/378 (19%)
Query: 895 LEGLKEIETEVEGEDLTPNELTVN--LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKT 952
LE K+I+ E +D TPN + L+ HQ W++ E GG+L G GKT
Sbjct: 19 LEDKKDIKKE-PCQDATPNGFVADFRLMPHQEAARDWMIDREAQEPSGGILGLAHGQGKT 77
Query: 953 VQSLALLMANKPEPKSAIKT------TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGG 1006
+AL++ K + S K TL++ P ++ W DE +
Sbjct: 78 AIVIALILDQKIKCASNDKKFEQKSPTLIIVPKRIIYQWYDEFKDRLEENALSVYLYYDD 137
Query: 1007 GENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVK 1066
+ + K S +L +YD+VL +Y+ + + K + GE V +++ +K
Sbjct: 138 EFSEARKNISASELQKYDVVLTTYRNVPVKEKD------ETGEK------VSKQVLQNIK 185
Query: 1067 SSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGE 1126
+ R++LDEA NI++ T+ + A T++S RW ++ P QN+ +
Sbjct: 186 ---------------WTRIVLDEAHNIRDSNTKKSTAIATLASKNRWCVTAAPFQNSEWD 230
Query: 1127 LYSLIRFLRIPPYNKEAK--------------------------FHSDIGA---VLNTKK 1157
+ +LI FL P+ + K F+S I N KK
Sbjct: 231 ICNLILFLGNKPFGENVKGPEKTPENLKKLKESTMELFRGNNLVFNSIINTGELSANEKK 290
Query: 1158 PYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEF 1217
YD + +R KK Q L ML++ + PE+ LK++ +K +E +F
Sbjct: 291 AYDIIEDAHKRFCKKGQSLKLLAMLQQASIHFHN-----LAPEEPLKKAMDKFMDEEEKF 345
Query: 1218 YQALESKSRDKAKKMLES 1235
+ E KS + A+K E+
Sbjct: 346 KE--EEKSFNMAEKNFET 361
>CE03657 [R] KOG0383 Predicted helicase
Length = 1787
Score = 96.7 bits (239), Expect = 3e-19
Identities = 63/197 (31%), Positives = 102/197 (50%), Gaps = 16/197 (8%)
Query: 1412 RLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLG 1471
+LKNG +K + K + +++K+ D +++IFSQ TM +IL F G
Sbjct: 924 KLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGG--HRVLIFSQMTMMLDILEDFCDVE-G 980
Query: 1472 LNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVILADPFWNP 1530
+ R DGS++ QR I+ + + V L+S +AG G+ L A+ VI+ D WNP
Sbjct: 981 YKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNP 1040
Query: 1531 FVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNL------------A 1578
+ QA R HR+ Q+ +V ++R + K SVE+RI + KK L +L +
Sbjct: 1041 HNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKS 1100
Query: 1579 MDPTQIREVNKLGRKEL 1595
M T++ +V + G +EL
Sbjct: 1101 MSKTELDDVLRWGTEEL 1117
Score = 63.9 bits (154), Expect = 2e-09
Identities = 71/324 (21%), Positives = 135/324 (40%), Gaps = 74/324 (22%)
Query: 892 RDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGK 951
R+ ++ LK+ E + + +E NL +Q +G+ WL S+ +LAD+MGLGK
Sbjct: 593 REKIDILKKYEVQPD----FISETGGNLHPYQLEGINWLRHCW-SNGTDAILADEMGLGK 647
Query: 952 TVQSLALLMANKPEPKSAIKTTLVVAPVAVL-------RVWKDEXXXXXXXXXXXXXXIF 1004
TVQSL L E + L+ AP++ + +W + +
Sbjct: 648 TVQSLTFLYTLMKEGHTK-GPFLIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVI 706
Query: 1005 GG-----------GENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPD 1053
G SK ++ ++L ++ ++L SY+ +
Sbjct: 707 REHEFSFVDGAVRGGPKVSKIKTLENL-KFHVLLTSYECIN------------------- 746
Query: 1054 VHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRW 1113
+D +++ + ++ +++DEA +KN ++ K + +R
Sbjct: 747 ---MDKAILSSI---------------DWAALVVDEAHRLKNNQSTFFKNLREYNIQYRV 788
Query: 1114 ALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKV 1173
L+GTP+QNN+ EL+ L+ FL +N+ F + ++++ ++ ++K+
Sbjct: 789 LLTGTPLQNNLEELFHLLNFLAPDRFNQLESFTA------------EFSEISKEDQIEKL 836
Query: 1174 QVLLRAIMLRRTKTSQIDGKPILQ 1197
LL MLRR K + G P Q
Sbjct: 837 HNLLGPHMLRRLKADVLTGMPSKQ 860
>CE25143 [L] KOG0390 DNA repair protein SNF2 family
Length = 818
Score = 96.3 bits (238), Expect = 4e-19
Identities = 60/168 (35%), Positives = 90/168 (52%), Gaps = 12/168 (7%)
Query: 1434 LDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESF 1493
LD I VT TD+K V+ S +T + K G +F+R DGSMS QRS +++F
Sbjct: 552 LDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLR-GYDFVRLDGSMSIKQRSKIVDTF 610
Query: 1494 YQD-NNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVH 1552
+ L+S KAG GL L AN +++ DP WNP ++QAM R R Q++ +++
Sbjct: 611 NDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIY 670
Query: 1553 RLLIKMSVEDRIVELQNKKKTLVNLAMD----------PTQIREVNKL 1590
RLL S+E+++ + Q KK L + +D Q+RE+ KL
Sbjct: 671 RLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSSEQLRELFKL 718
>YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1468
Score = 95.9 bits (237), Expect = 5e-19
Identities = 55/147 (37%), Positives = 89/147 (60%), Gaps = 3/147 (2%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQ-DNNYRVMLISM 1506
+++IFSQ +ILG ++ G+NF R DG++ S+QR I+ F D+N V L+S
Sbjct: 713 RVLIFSQMVRMLDILGDYLSIK-GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 771
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+AG G+ L A+ V++ D WNP + QAM R HRI Q+ V V+RL+ K +VE+ ++E
Sbjct: 772 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 831
Query: 1567 LQNKKKTLVNLAMDPTQIREVNKLGRK 1593
+ +KK ++ A+ + + NK +K
Sbjct: 832 -RARKKMILEYAIISLGVTDGNKYTKK 857
>At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1048
Score = 95.9 bits (237), Expect = 5e-19
Identities = 46/132 (34%), Positives = 80/132 (59%), Gaps = 1/132 (0%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMK 1507
+ +IF+Q T ++L FI G ++R DGS +R ++ F + + ++S +
Sbjct: 678 RALIFTQMTKMLDVLEAFINL-YGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTR 736
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
+G G+ L A+ VI D WNP +++QA DRCHRI Q REV+++RL+ + ++E+ I++
Sbjct: 737 SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 796
Query: 1568 QNKKKTLVNLAM 1579
N+K+ L NL +
Sbjct: 797 ANQKRVLDNLVI 808
Score = 86.7 bits (213), Expect = 3e-16
Identities = 87/359 (24%), Positives = 146/359 (40%), Gaps = 72/359 (20%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P L +L ++Q GL WLV+M + K G+LAD+MGLGKT+ ++ALL A+ K
Sbjct: 114 PFLLKHSLREYQHIGLDWLVTMYEK-KLNGILADEMGLGKTIMTIALL-AHLACDKGIWG 171
Query: 972 TTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQ 1031
L+V P +V+ W+ E FG + K + W L + + + +Y+
Sbjct: 172 PHLIVVPTSVMLNWETE--FLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYR 229
Query: 1032 TLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQ 1091
+ + K WK +ILDEA
Sbjct: 230 LVIQDSKMFKRKKWK-------------------------------------YLILDEAH 252
Query: 1092 NIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFH----S 1147
IKN K+Q + +S R L+GTP+QN++ EL+SL+ FL + +F +
Sbjct: 253 LIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCN 312
Query: 1148 DIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESA 1207
I ++ ++ + + + ++ +LR +LRR K QLP KH
Sbjct: 313 PIAGMVEGQEKIN------KEVIDRLHNVLRPFLLRRLKRDVEK-----QLPSKH----- 356
Query: 1208 NKLEGDELEFYQALESKSRDKAKKMLESKQKQ-----GAYSSIXXXXXXXXQACLHSEL 1261
E + L + R+ + + S + Q G++ + + C H +L
Sbjct: 357 ------EHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMISIIMQLRKVCNHPDL 409
>HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 310
Score = 95.5 bits (236), Expect = 6e-19
Identities = 53/130 (40%), Positives = 75/130 (56%), Gaps = 1/130 (0%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMK 1507
K+++FSQ T +IL + NF R DGSMS S+R + SF D + L+S +
Sbjct: 54 KVLLFSQMTSMLDILMDYCHLR-DFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTR 112
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
AG G+ LT A+ VI+ D WNP + QA DRCHRI Q + V V+RL+ +++ +IVE
Sbjct: 113 AGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVER 172
Query: 1568 QNKKKTLVNL 1577
K+ L L
Sbjct: 173 AAAKRKLEKL 182
>Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 838
Score = 95.5 bits (236), Expect = 6e-19
Identities = 53/130 (40%), Positives = 75/130 (56%), Gaps = 1/130 (0%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMK 1507
K+++FSQ T +IL + NF R DGSMS S+R + SF D + L+S +
Sbjct: 617 KVLLFSQMTSMLDILMDYCHLR-DFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTR 675
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
AG G+ LT A+ VI+ D WNP + QA DRCHRI Q + V V+RL+ +++ +IVE
Sbjct: 676 AGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVER 735
Query: 1568 QNKKKTLVNL 1577
K+ L L
Sbjct: 736 AAAKRKLEKL 745
>Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 348
Score = 95.5 bits (236), Expect = 6e-19
Identities = 53/130 (40%), Positives = 75/130 (56%), Gaps = 1/130 (0%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMK 1507
K+++FSQ T +IL + NF R DGSMS S+R + SF D + L+S +
Sbjct: 127 KVLLFSQMTSMLDILMDYCHLR-DFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTR 185
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
AG G+ LT A+ VI+ D WNP + QA DRCHRI Q + V V+RL+ +++ +IVE
Sbjct: 186 AGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVER 245
Query: 1568 QNKKKTLVNL 1577
K+ L L
Sbjct: 246 AAAKRKLEKL 255
>Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family
Length = 808
Score = 95.5 bits (236), Expect = 6e-19
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 6/191 (3%)
Query: 1417 YTIDYKSL----KESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGL 1472
+ DY L KES K+++ ++ + + EK+V+ S +T IL K++ G
Sbjct: 525 FPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRH-GY 583
Query: 1473 NFLRYDGSMSSSQRSACIESFY-QDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPF 1531
+ R DG SQR ++ F Q +++ + L+S KAG GL L +H+IL D WNP
Sbjct: 584 AYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPA 643
Query: 1532 VEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLG 1591
+ QAM R R Q+ V+++RLL ++E++I + Q K+ L +D T+ E +
Sbjct: 644 TDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFS 703
Query: 1592 RKELGFLFGLN 1602
+EL LF L+
Sbjct: 704 VEELKNLFTLH 714
Score = 72.8 bits (177), Expect = 4e-12
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 50/228 (21%)
Query: 915 LTVNLLKHQRQGLRWL----VSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPE----P 966
L +L HQ++G+ +L + M + + G +LAD+MGLGKT+Q ++L+ + +
Sbjct: 190 LVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGG 249
Query: 967 KSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIV 1026
K IK TL+V P +++ WK E + + K + Y ++
Sbjct: 250 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTV-----DQDHKVEEFIKSIFYSVL 304
Query: 1027 LVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVI 1086
++SY+ L L+ ++Q+K + +F +I
Sbjct: 305 IISYEML-------------------------LRSLDQIK------------NIKFDLLI 327
Query: 1087 LDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFL 1134
DE +KN + A ++S R L+GTPIQN++ E ++LI F+
Sbjct: 328 CDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFV 375
>Hs4506397 [L] KOG0390 DNA repair protein SNF2 family
Length = 747
Score = 95.1 bits (235), Expect = 8e-19
Identities = 65/211 (30%), Positives = 109/211 (50%), Gaps = 9/211 (4%)
Query: 1380 ISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARL------KNGYTIDYKSLKESKKVEMC 1433
+S + +L + L YDK V E+ + GY+ + S K+ +
Sbjct: 442 MSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKM-LV 500
Query: 1434 LDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESF 1493
LD I VT S + +K+V+ S +T ++ + L ++R DG+MS +R+ +E F
Sbjct: 501 LDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYL-YVRLDGTMSIKKRAKVVERF 559
Query: 1494 YQDNNYR-VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVH 1552
++ V ++S KAG GL L AN +++ DP WNP +EQAM R R Q++ Y++
Sbjct: 560 NSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 619
Query: 1553 RLLIKMSVEDRIVELQNKKKTLVNLAMDPTQ 1583
RLL ++E++I + Q+ KK L + +D Q
Sbjct: 620 RLLSAGTIEEKIFQRQSHKKALSSCVVDEEQ 650
>At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1063
Score = 95.1 bits (235), Expect = 8e-19
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 4/180 (2%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT + + K+ + ++ K+ D D +++IFSQ T +IL ++ G + R
Sbjct: 471 YTTGDHLVTNAGKMVLLDKLLPKLKDR--DSRVLIFSQMTRLLDILEDYLMYR-GYQYCR 527
Query: 1477 YDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
DG+ +R A IE++ + + + V L+S +AG G+ L A+ VIL D WNP V+ Q
Sbjct: 528 IDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 587
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKEL 1595
A DR HRI Q++EV V R + ++E +++E KK L L + ++ E + + EL
Sbjct: 588 AQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKTVNKDEL 647
Score = 80.9 bits (198), Expect = 2e-14
Identities = 84/336 (25%), Positives = 144/336 (42%), Gaps = 64/336 (19%)
Query: 896 EGLKEIETEVEGEDLT-----PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLG 950
E LKE E + G T P + L +Q GL WL+ + ++ G +LAD+MGLG
Sbjct: 153 ECLKEEEGGIVGSGGTRLLTQPACIQGKLRDYQLAGLNWLIRLYENGING-ILADEMGLG 211
Query: 951 KTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENN 1010
KT+Q+++LL A E + +VVAP + L W +E G E
Sbjct: 212 KTLQTISLL-AYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVK--FLGNPEER 268
Query: 1011 SSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDE 1070
++DI + S++ E SW+
Sbjct: 269 RHIREELLVAGKFDICVTSFEMAIKEKTTLRRFSWRY----------------------- 305
Query: 1071 YFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSL 1130
+I+DEA IKN+ + +K S+ +R ++GTP+QNN+ EL++L
Sbjct: 306 --------------IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWAL 351
Query: 1131 IRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQI 1190
+ FL +P A+ + + ++++Q ++++ +LR +LRR K+
Sbjct: 352 LNFL-LPEVFSSAETFDEWFQI--------SGENDQQEVVQQLHKVLRPFLLRRLKSDVE 402
Query: 1191 DGKPILQLPEKH--LKESANKLEGDELEFYQALESK 1224
G P P+K LK +++ + ++Y+AL K
Sbjct: 403 KGLP----PKKETILKVGMSQM---QKQYYKALLQK 431
>7295868 [L] KOG0390 DNA repair protein SNF2 family
Length = 784
Score = 94.7 bits (234), Expect = 1e-18
Identities = 63/224 (28%), Positives = 112/224 (49%), Gaps = 7/224 (3%)
Query: 1369 VCRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKA--RLKNGYTIDYKSLKE 1426
V R + + E S + L L Y+K+ A +K +N +YK
Sbjct: 434 VRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPKDL 493
Query: 1427 SKKVE---MCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
+ ++ M LD + + ++K+V+ S +T ++ +K F+R DG+MS
Sbjct: 494 NPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRK-YGFVRLDGTMSI 552
Query: 1484 SQRSACIESFYQ-DNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
+RS ++ F +++ + ++S KAG GL L AN + + DP WNP +EQAM R R
Sbjct: 553 KKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWR 612
Query: 1543 ISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIRE 1586
Q++ Y++RL+ S+E++I++ Q KK+L + +D + E
Sbjct: 613 DGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAE 656
Score = 87.8 bits (216), Expect = 1e-16
Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 58/361 (16%)
Query: 915 LTVNLLK-HQRQGLRWL---VSMEKSSKRGGLLADDMGLGKTVQSLAL---LMANKPEPK 967
L N+L+ HQR+G+R++ V ++ + G ++AD+MGLGKT+Q + L L+ PE K
Sbjct: 151 LLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECK 210
Query: 968 SAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNS---SKFRSWKDLAEYD 1024
I +VV+P ++++ W+ E G EN +F
Sbjct: 211 PTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTP 270
Query: 1025 IVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYR 1084
++L+SY+T F+ + + K E
Sbjct: 271 VLLISYET----FRIYAEILCKY---------------------------------EVGM 293
Query: 1085 VILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAK 1144
VI DE +KN +A + + R LSGTPIQN++ E YSL+ F+ A
Sbjct: 294 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAV 353
Query: 1145 FHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAI---MLRRTKTSQIDGKPILQLPEK 1201
F + + + + D + ERQRA++K Q L+ + ++RR T+QI K LP K
Sbjct: 354 FKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRR--TNQILTK---YLPVK 408
Query: 1202 HLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSEL 1261
KL +LE Y D+ ++ L ++ + +++ + C H +L
Sbjct: 409 FEMVICAKLTAIQLELY--TNFLKSDQVRRSLADCNEKASLTAL-ADITTLKKICSHPDL 465
Query: 1262 V 1262
+
Sbjct: 466 I 466
>YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1867
Score = 94.0 bits (232), Expect = 2e-18
Identities = 86/364 (23%), Positives = 151/364 (40%), Gaps = 61/364 (16%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P + L K+Q+ G+ WL + K G +L DDMGLGKT+Q++ ++ +++ K +
Sbjct: 1265 PIAIKATLRKYQQDGVNWLAFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRKEDYE 1323
Query: 972 TT----------LVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLA 1021
T L++ P ++ W++E ++ GG R L+
Sbjct: 1324 KTRSVESRALPSLIICPPSLTGHWENE---FDQYAPFLKVVVYAGGPTVRLTLR--PQLS 1378
Query: 1022 EYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSE 1081
+ DI++ SY DV DL ++N+ +E
Sbjct: 1379 DADIIVTSY----------------------DVARNDLAVLNK---------------TE 1401
Query: 1082 FYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNK 1141
+ +LDE IKN +++ AKA I++ R L+GTPIQNN+ EL+SL FL
Sbjct: 1402 YNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGT 1461
Query: 1142 EAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAI---MLRRTKTSQIDGKPILQL 1198
E F + + + E++ + ++ L + + MLRR K + L
Sbjct: 1462 EKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLS-----DL 1516
Query: 1199 PEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLH 1258
P K +++ +L + + Y K ++ +K +E+ + I + C H
Sbjct: 1517 PPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNH 1576
Query: 1259 SELV 1262
LV
Sbjct: 1577 PALV 1580
Score = 80.5 bits (197), Expect = 2e-14
Identities = 43/138 (31%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 1445 TDEKLVIFSQFTMFFEILGH--FIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVM 1502
+ + +IF Q +++ + F K + ++R DGS+ R + F +D + +
Sbjct: 1645 SQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCL 1704
Query: 1503 LISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVED 1562
L++ K G GL LT A+ VI + WNP + QAMDR HRI Q++ V V+R++ K ++E+
Sbjct: 1705 LLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEE 1764
Query: 1563 RIVELQNKKKTLVNLAMD 1580
+I+ LQ K + + ++
Sbjct: 1765 KIMGLQKFKMNIASTVVN 1782
>SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1375
Score = 93.6 bits (231), Expect = 2e-18
Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 28/278 (10%)
Query: 1315 VCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLVCRKMN 1374
+C+ DI + +CGH C+ C E ++ ++ P N+ I
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAYYI--------G 1142
Query: 1375 NDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKES--KKVEM 1432
++ S Q F V N + L + D+ + I LKES K++
Sbjct: 1143 ESRDIYSRQEF--VTGFNKRDERLEILDDEAYRQ----------ISNMELKESFGSKIDT 1190
Query: 1433 CLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIES 1492
+ + + K+V+FSQ+ ++L + N G+ F+R+DG ++ C++
Sbjct: 1191 ISKHLLYLKHNELYPKVVVFSQWLDVLDVLHKSFEAN-GIVFIRFDGK----SKNTCLKR 1245
Query: 1493 FYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVH 1552
F ++ + +V+ + ++ +SGLTLT A HV + +P N +E QA+ R HRI Q R +V+
Sbjct: 1246 FKEERSLQVLTLHARSQSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVY 1305
Query: 1553 RLLIKMSVEDRIVELQ-NKKKTLVNLAMDPTQIREVNK 1589
+++ +VE I+ L K + L L +D + +N+
Sbjct: 1306 YYIVEDTVEGHILNLSLTKHEQLDKLGLDVPLVGNINR 1343
>SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 635
Score = 93.2 bits (230), Expect = 3e-18
Identities = 90/379 (23%), Positives = 150/379 (38%), Gaps = 59/379 (15%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLAL----------LMA 961
P ++ +L K+Q++G+ WL + K G +L DDMGLGKT+Q++ + L
Sbjct: 33 PVPISADLRKYQQEGVNWLAFLNKYELHG-ILCDDMGLGKTLQTICIVASDHYNRQKLFE 91
Query: 962 NKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLA 1021
PK A +L+V P + W+ E + G +K RS +
Sbjct: 92 ESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSA---YVGPPAERAKIRS--KMK 146
Query: 1022 EYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSE 1081
+ D+V+ SY ++ + + W
Sbjct: 147 KSDVVVTSYDICRNDVDELVKIDWNY---------------------------------- 172
Query: 1082 FYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNK 1141
+LDE IKN + + KA ++ S R LSGTPIQNN+ EL+SL FL
Sbjct: 173 ---CVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGT 229
Query: 1142 EAKFHSDIGAVLNTKKPYDYNDSERQR---AMKKVQVLLRAIMLRRTKTSQIDGKP--IL 1196
E F + + + ER+R A++ + + MLRR K + P I+
Sbjct: 230 EKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPPKII 289
Query: 1197 QLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQAC 1256
Q + + KL D + E D+ +K +++K+ + I + C
Sbjct: 290 QDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLC 349
Query: 1257 LHSELVKIGESNAKSSKII 1275
H L+ + E + K + I+
Sbjct: 350 NHPALI-LTEKHPKRNAIV 367
Score = 80.1 bits (196), Expect = 3e-14
Identities = 48/166 (28%), Positives = 93/166 (55%), Gaps = 11/166 (6%)
Query: 1440 VTDSNTDEKLVIFSQFTMFFEILGHFIKKNL------GLNFLRYDGSMSSSQRSACIESF 1493
+T++ ++ +++IF Q ++ ++K+L + ++R DGS+ ++R + F
Sbjct: 412 LTNAVSEHRVLIFCQLKDMLDM----VEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKF 467
Query: 1494 YQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHR 1553
D + V+L++ G GL LT A+ VI + WNP + QAMDR HRI Q++ V V+R
Sbjct: 468 NNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYR 527
Query: 1554 LLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLF 1599
L+ + +E++I+ LQ K + + ++ Q ++ +G ++ LF
Sbjct: 528 LITRGCLEEKIMGLQRFKMNVASTVVN-QQNAGLSSIGTDQILDLF 572
>CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1933
Score = 93.2 bits (230), Expect = 3e-18
Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMK 1507
+ +IF+Q + ++L F+ + G + R DG+ QR A +E F D ++S +
Sbjct: 1257 RCLIFTQMSKMLDVLQTFLSHH-GYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTR 1315
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
+G G+ LT A+ VI D WNP ++ QA DRCHRI Q R V ++RL+ + ++E+ I+
Sbjct: 1316 SGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRK 1375
Query: 1568 QNKKKTLVNLAMD 1580
+K+ L LA+D
Sbjct: 1376 ATQKRRLGELAID 1388
Score = 86.7 bits (213), Expect = 3e-16
Identities = 87/343 (25%), Positives = 145/343 (41%), Gaps = 54/343 (15%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAP 978
L ++Q GL W+V++ + + G +LAD+MGLGKT+Q+++LL A+ +S L+V P
Sbjct: 597 LREYQMVGLDWMVTLYEKNLNG-ILADEMGLGKTIQTISLL-AHMACSESIWGPHLIVVP 654
Query: 979 VAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFK 1038
+V+ W E FG + + K + W + + + SY+T+ + +
Sbjct: 655 TSVILNW--EMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTVTQDIR 712
Query: 1039 KHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKT 1098
+W+ +ILDEAQNIKN K+
Sbjct: 713 AFKQRAWQ-------------------------------------YLILDEAQNIKNWKS 735
Query: 1099 QAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKP 1158
Q +A + + R L+GTP+QN++ EL+SL+ FL ++ F L
Sbjct: 736 QRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGM-- 793
Query: 1159 YDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFY 1218
+ N + ++ +LR +LRR K +++ QLPEK E + + Y
Sbjct: 794 MEGNMEFNAPLIGRLHKVLRPFILRRLK-KEVE----KQLPEK--TEHIVNCSLSKRQRY 846
Query: 1219 QALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSEL 1261
+ SR K+ L K G S+ + C H L
Sbjct: 847 LYDDFMSRRSTKENL----KSGNMMSVLNIVMQLRKCCNHPNL 885
>At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1648
Score = 93.2 bits (230), Expect = 3e-18
Identities = 80/302 (26%), Positives = 133/302 (43%), Gaps = 41/302 (13%)
Query: 1310 DMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLV 1369
D CP+C E + M+ CGH C CF + ++ T + C +
Sbjct: 1325 DEACPICHEILRNQKMVF--QCGHSTCCNCFFAMTERKSVQETLQKW--------VMCPI 1374
Query: 1370 CRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKK 1429
CR+ + D I+Y D N + S + D +E ++ Y K
Sbjct: 1375 CRQ-HTDVRNIAYA--DDRRNSSSS------DQDHKDSEASLVVQGSY---------GTK 1416
Query: 1430 VEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS------ 1483
+E I + S+ K+++FS + ++L H N + +R G S
Sbjct: 1417 IEAVTRRILWIKSSDPQTKVLVFSSWNDVLDVLEHAFAAN-SITCIRMKGGRKSQTAISK 1475
Query: 1484 ---SQRSACIESFYQ--DNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMD 1538
S++ + +Q + + +V+L+ ++ G +GL L A HVIL +P NP E QA+
Sbjct: 1476 FKGSEKETQKTNSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVG 1535
Query: 1539 RCHRISQEREVYVHRLLIKMSVEDRIVEL-QNKKKTLVNLAMDPTQIREVNKLGRKELGF 1597
R HRI QE+ VHR L+ +VE+ I +L +NK L + + T+ ++ L K+L
Sbjct: 1536 RVHRIGQEKPTLVHRFLVSGTVEESIYKLNRNKNTNLSSFSSRNTKNQDQQFLTLKDLES 1595
Query: 1598 LF 1599
LF
Sbjct: 1596 LF 1597
Score = 73.2 bits (178), Expect = 3e-12
Identities = 74/302 (24%), Positives = 123/302 (40%), Gaps = 33/302 (10%)
Query: 973 TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEY---DIVLVS 1029
TL+V P +L W E I+ G N S D+ E DIVL +
Sbjct: 486 TLIVCPAPILPQWHSEITRHTRLGSLITC-IYEGVRNASLSEEPMIDITELLNADIVLTT 544
Query: 1030 YQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDE 1089
Y L + H D H D + K +P R ++R+ LDE
Sbjct: 545 YDVLKEDLT-----------HDFDRHDGDRHCLRFQKRYPVIPTPLTR--IFWWRICLDE 591
Query: 1090 AQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDI 1149
AQ +++ A + + + RW ++GTPIQ + +L+ L++FL+ P++ + I
Sbjct: 592 AQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRWWIEVI 651
Query: 1150 GAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANK 1209
+ PY+ D+ +AM+ + +M R +K D LQLP + S K
Sbjct: 652 ------RDPYERRDT---KAMEFTHKFFKQVMWRSSKVHVADE---LQLPPQEECVSWLK 699
Query: 1210 LEGDELEFYQALESKSRDKAKKMLESKQ----KQGAYSSIXXXXXXXXQACLHSELVKIG 1265
E FY A++++E+ + K+G SS A L + L+K+
Sbjct: 700 FSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLR 759
Query: 1266 ES 1267
++
Sbjct: 760 QA 761
>ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 883
Score = 92.8 bits (229), Expect = 4e-18
Identities = 46/156 (29%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
+ +S K+ + +++ K+ +L+++ Q T +++ ++ + G +LR DGS+ +
Sbjct: 722 ISDSGKLVVLDELLPKLKAEG--HRLLMYFQMTRMIDLIEDYLVRK-GYTYLRLDGSLKA 778
Query: 1484 SQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRI 1543
S R+ I + + + + L+S +AG G+ LT A+ V+ D WNP ++QAMDR HR+
Sbjct: 779 SARAEVIRDWQASDKF-IFLLSTRAGGLGINLTAADTVVFYDSDWNPTADQQAMDRAHRL 837
Query: 1544 SQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAM 1579
Q R+V V+RL+ + +VE++++E N+K + + +
Sbjct: 838 GQTRDVTVYRLITRGTVEEKVLESANRKDEIQKMVI 873
Score = 88.2 bits (217), Expect = 1e-16
Identities = 79/283 (27%), Positives = 128/283 (44%), Gaps = 54/283 (19%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P+ L L ++Q +GL WLVS+ G +LADDMGLGKTVQS++LL A+ E +
Sbjct: 268 PSILKCTLKEYQLRGLNWLVSLYDKGING-ILADDMGLGKTVQSISLL-AHLYETEEVPG 325
Query: 972 TTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQ 1031
LVV + L W E F G + + + K D+V+ +YQ
Sbjct: 326 PFLVVTISSTLDNWAQEFARFLPSFRVCR---FSGSPSERKELK--KRFKNSDVVITTYQ 380
Query: 1032 TLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQ 1091
T S D K++ ++K + +ILDEAQ
Sbjct: 381 TAVS----------------------DEKMLKKIK---------------WQYMILDEAQ 403
Query: 1092 NIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGA 1151
IK+ ++ K + + R L+GTPIQN++ EL++L+ F+ ++ +F
Sbjct: 404 AIKSSMSRRWKTLLSFKARNRLLLTGTPIQNSMQELWALLHFIMPTLFDSLNEFSDWFSK 463
Query: 1152 VLNT----KKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQI 1190
+ T KK D +++++++ +L+ MLRR K+ I
Sbjct: 464 EIETSAIMKKTVD------EKSLQRLHAILKPFMLRRHKSDVI 500
>CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1038
Score = 92.8 bits (229), Expect = 4e-18
Identities = 59/172 (34%), Positives = 93/172 (53%), Gaps = 3/172 (1%)
Query: 1409 QKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKK 1468
++ R + + ++ + +S K E LD++ D K++IFSQFT +IL ++
Sbjct: 734 ERFRCTSKFLLNEQLALKSGKCEQ-LDVMLPEIQKKGD-KVLIFSQFTSMLDILEVYLNI 791
Query: 1469 NLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFW 1528
G ++ R DG R I F + V L+S +AG G+ LT ANH+I+ D +
Sbjct: 792 R-GYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDF 850
Query: 1529 NPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMD 1580
NP+ ++QA DRCHR+ QE+ V+V RL+ K +VE ++ L KK L D
Sbjct: 851 NPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQLEKQVTD 902
Score = 73.9 bits (180), Expect = 2e-12
Identities = 89/346 (25%), Positives = 145/346 (41%), Gaps = 59/346 (17%)
Query: 908 EDLTPNELTVNLLK-------HQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLM 960
E T L + LLK +Q G++WL+ M +L D+MGLGKT+Q +A L
Sbjct: 376 ERCTEGPLQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNA-ILGDEMGLGKTIQIVAFLS 434
Query: 961 ANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDL 1020
K K+ L+V P + + W E F W
Sbjct: 435 YLKQIGKTG--PHLIVVPSSTIENWIGE-------------------------FHKWCP- 466
Query: 1021 AEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDS 1080
I L++Y E +KH K + DV ++ KS D+ F++N S
Sbjct: 467 ---SIQLLTYYGSQDE-RKHLRHRVKKQKDHIDVILTTYNMVTS-KSDDK---KFFKNFS 518
Query: 1081 EFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYN 1140
Y VI DE +KN ++ + + + L+GTP+QNN+ EL SL+ F+ +N
Sbjct: 519 LNY-VIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFN 577
Query: 1141 KEA-------KFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGK 1193
K + +G L+TK Y +Q +++ + +L+ +LRR K +
Sbjct: 578 KYCEDITHLLQHFKQLGPALDTKNKALY----QQDRIEEAKAILQPYILRRLKNQVLGSL 633
Query: 1194 PIL--QLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQ 1237
P Q+ E +K+ +L + +E Q E +S D ++ +Q
Sbjct: 634 PSKSEQIIEVEMKKPQKQLYDNIVEALQQSE-ESGDSYGSLMRLRQ 678
>Hs4557453 [R] KOG0383 Predicted helicase
Length = 1912
Score = 92.0 bits (227), Expect = 7e-18
Identities = 54/192 (28%), Positives = 100/192 (51%), Gaps = 4/192 (2%)
Query: 1405 MVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGH 1464
+ A + ++ NG ++ S K+ + ++K + + +++IFSQ T ++L
Sbjct: 1027 VAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGG--HRVLIFSQMTKMLDLLED 1084
Query: 1465 FIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRV-MLISMKAGNSGLTLTCANHVIL 1523
F++ G + R DG ++ + R I+ F + L+S +AG G+ L A+ VI+
Sbjct: 1085 FLEHE-GYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVII 1143
Query: 1524 ADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQ 1583
D WNP + QA R HRI Q ++V ++R + + SVE+RI ++ KK L +L + P
Sbjct: 1144 YDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGL 1203
Query: 1584 IREVNKLGRKEL 1595
+ + ++EL
Sbjct: 1204 GSKTGSMSKQEL 1215
>At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 2049
Score = 92.0 bits (227), Expect = 7e-18
Identities = 87/350 (24%), Positives = 147/350 (41%), Gaps = 60/350 (17%)
Query: 884 NTADASSLRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLL 943
N DA L LL+ + ++ L EL V L ++Q++G+ WL + K K G+L
Sbjct: 1415 NAEDAKFLEQLLDN-----SHIDDYKLC-TELKVQLRRYQQEGINWLGFL-KRFKLHGIL 1467
Query: 944 ADDMGLGKTVQSLALLMANKPEPKSA-----IKTTLVVAPVAVLRVWKDEXXXXXXXXXX 998
DDMGLGKT+Q+ A++ ++ E + + + +++V P ++ W E
Sbjct: 1468 CDDMGLGKTLQASAIVASDAAERRGSTDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLL 1527
Query: 999 XXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVD 1058
G ++ S + + +++++ SY
Sbjct: 1528 SVLQYVGSAQDRVSLREQFNN---HNVIITSYDV-------------------------- 1558
Query: 1059 LKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGT 1118
V+ +Y + F N ILDE IKN K++ A + + R LSGT
Sbjct: 1559 ------VRKDVDYLTQFSWN-----YCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGT 1607
Query: 1119 PIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLR 1178
PIQNNI EL+SL FL E +F + G L + + + + + ++ L +
Sbjct: 1608 PIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHK 1667
Query: 1179 AIM---LRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKS 1225
+M LRRTK + LPEK +++ L +L+ Y+ S
Sbjct: 1668 QVMPFLLRRTKEEVLS-----DLPEKIIQDRYCDLSPVQLKLYEQFSGSS 1712
Score = 76.3 bits (186), Expect = 4e-13
Identities = 42/146 (28%), Positives = 79/146 (53%), Gaps = 13/146 (8%)
Query: 1448 KLVIFSQFTMFFEILGH--FIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLIS 1505
+++IF+Q +I+ F + ++R DGS+ +R +++F D V+L++
Sbjct: 1825 RVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLT 1884
Query: 1506 MKAGNSGLTLTCANHVILADPFWNPFVEEQ-----------AMDRCHRISQEREVYVHRL 1554
G GL LT A+ ++ + WNP + Q AMDR HR+ Q+R V VHRL
Sbjct: 1885 THVGGLGLNLTSADTLVFMEHDWNPMRDHQFANIELNKLWQAMDRAHRLGQKRVVNVHRL 1944
Query: 1555 LIKMSVEDRIVELQNKKKTLVNLAMD 1580
+++ ++E++++ LQ K ++ N ++
Sbjct: 1945 IMRGTLEEKVMSLQKFKVSVANTVIN 1970
>7293795 [R] KOG0383 Predicted helicase
Length = 883
Score = 92.0 bits (227), Expect = 7e-18
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 1407 AEQKARLKNGYTIDYKSL-KESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHF 1465
A ++A + + SL K S K+++ ++K++ N ++++FSQ T +L HF
Sbjct: 564 AAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADN--HRVLLFSQMTKMLNVLEHF 621
Query: 1466 IKKNLGLNFLRYDGSMSSSQRSACIESFYQD-NNYRVMLISMKAGNSGLTLTCANHVILA 1524
++ G + R DGS+ R I+ F + + V L+S +AG G+ L A+ VI+
Sbjct: 622 LEGE-GYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIF 680
Query: 1525 DPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDP 1581
D WNP + QA R HR+ Q+++V ++R + SVE+RI+++ K L +L + P
Sbjct: 681 DSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRP 737
>Hs20533808 [R] KOG0383 Predicted helicase
Length = 1954
Score = 91.7 bits (226), Expect = 9e-18
Identities = 56/184 (30%), Positives = 96/184 (51%), Gaps = 4/184 (2%)
Query: 1413 LKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGL 1472
L NG +K S K+ + ++KK+ D +++IFSQ T ++L F++ G
Sbjct: 1009 LPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEG--HRVLIFSQMTKMLDLLEDFLEYE-GY 1065
Query: 1473 NFLRYDGSMSSSQRSACIESFYQDNNYRV-MLISMKAGNSGLTLTCANHVILADPFWNPF 1531
+ R DG ++ R I+ F + L+S +AG G+ L A+ VI+ D WNP
Sbjct: 1066 KYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPH 1125
Query: 1532 VEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLG 1591
+ QA R HRI Q ++V ++R + + SVE+RI ++ +K L +L + P + +
Sbjct: 1126 NDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMT 1185
Query: 1592 RKEL 1595
++EL
Sbjct: 1186 KQEL 1189
>At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1057
Score = 91.7 bits (226), Expect = 9e-18
Identities = 51/142 (35%), Positives = 82/142 (56%), Gaps = 2/142 (1%)
Query: 1446 DEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLI 1504
D +++IFSQ T +IL ++ G + R DG+ +R A IE++ + + + V L+
Sbjct: 506 DSRVLIFSQMTRLLDILEDYLMYR-GYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLL 564
Query: 1505 SMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRI 1564
S +AG G+ L A+ VIL D WNP V+ QA DR HRI Q++EV V R + ++E+++
Sbjct: 565 STRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKV 624
Query: 1565 VELQNKKKTLVNLAMDPTQIRE 1586
+E KK L L + ++ E
Sbjct: 625 IERAYKKLALDALVIQQGRLAE 646
Score = 82.0 bits (201), Expect = 7e-15
Identities = 85/349 (24%), Positives = 149/349 (42%), Gaps = 64/349 (18%)
Query: 896 EGLKEIETEVEGEDLT-----PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLG 950
E LKE E + G T P+ + + +Q GL WL+ + ++ G +LAD+MGLG
Sbjct: 161 EYLKEEEDGLTGSGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGING-ILADEMGLG 219
Query: 951 KTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENN 1010
KT+Q+++LL A E + +VVAP + L W +E G E
Sbjct: 220 KTLQTISLL-AYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVK--FLGNPEER 276
Query: 1011 SSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDE 1070
++DI + S++ E SW+
Sbjct: 277 RHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRY----------------------- 313
Query: 1071 YFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSL 1130
+I+DEA IKN+ + +K S+ +R ++GTP+QNN+ EL++L
Sbjct: 314 --------------IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWAL 359
Query: 1131 IRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQI 1190
+ FL +P A+ + + ++++Q ++++ +LR +LRR K+
Sbjct: 360 LNFL-LPEIFSSAETFDEWFQI--------SGENDQQEVVQQLHKVLRPFLLRRLKSDVE 410
Query: 1191 DGKPILQLPEKH--LKESANKLEGDELEFYQALESKSRDKAKKMLESKQ 1237
G P P+K LK +++ + ++Y+AL K + E K+
Sbjct: 411 KGLP----PKKETILKVGMSQM---QKQYYKALLQKDLEAVNAGGERKR 452
>At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 763
Score = 91.7 bits (226), Expect = 9e-18
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 1418 TIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRY 1477
T+ K + S K +++ + S +++IFSQ+T +IL + +G+ + R
Sbjct: 578 TLSDKHVMLSAKCRTLAELLPSMKKSG--HRVLIFSQWTSMLDIL-EWTLDVIGVTYRRL 634
Query: 1478 DGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAM 1537
DGS + R +++F D + L+S +AG GL LT A+ VI+ D +NP ++ QA
Sbjct: 635 DGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAE 694
Query: 1538 DRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTL 1574
DRCHRI Q + V + RL+ K +V++ I E+ +K L
Sbjct: 695 DRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVL 731
>Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1052
Score = 91.3 bits (225), Expect = 1e-17
Identities = 58/182 (31%), Positives = 98/182 (52%), Gaps = 6/182 (3%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT D + S K+ + ++ K+ + + +++IFSQ T +IL + + R
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLKEQGS--RVLIFSQMTRVLDILEDYCMWR-NYEYCR 528
Query: 1477 YDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
DG +R I ++ + N+ + V ++S +AG G+ L A+ VIL D WNP V+ Q
Sbjct: 529 LDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQI--REVNKLGRK 1593
AMDR HRI Q + V V R + +VE+RIVE K L ++ + ++ + +NK+G+
Sbjct: 589 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKD 648
Query: 1594 EL 1595
E+
Sbjct: 649 EM 650
Score = 85.5 bits (210), Expect = 6e-16
Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 66/292 (22%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALL-----MANKPEPKSAIKTT 973
L +Q +GL WL+S+ ++ G +LAD+MGLGKT+Q+++LL N P P
Sbjct: 180 LRDYQVRGLNWLISLYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPH------ 232
Query: 974 LVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTL 1033
+V+ P + L W E + G E ++ R E+D+ + SY+ L
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVC--LIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
Query: 1034 ASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNI 1093
E +W+ +++DEA I
Sbjct: 291 IKEKSVFKKFNWRY-------------------------------------LVIDEAHRI 313
Query: 1094 KNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVL 1153
KN+K++ ++ +T R L+GTP+QNN+ EL+SL+ FL +N F S
Sbjct: 314 KNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDS------ 367
Query: 1154 NTKKPYDYNDS-ERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLK 1204
+D N+ Q+ ++++ ++LR +LRR K P P+K +K
Sbjct: 368 ----WFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLP----PKKEVK 411
>ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 695
Score = 91.3 bits (225), Expect = 1e-17
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 6/194 (3%)
Query: 1403 DKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEIL 1462
D+ E +A G + Y + S K+++ +D++KK K+++FSQ +I+
Sbjct: 443 DEKNGEDEALELPGADVSYDLVSSSCKIKILVDLLKKWRSEGN--KVLVFSQTIRMLDII 500
Query: 1463 GHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVI 1522
++K +LR DG +S R ++ F +D + + L++ K G GL LT A+ ++
Sbjct: 501 ERCVRK---YTYLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLTGASRIV 557
Query: 1523 LADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTL-VNLAMDP 1581
+ DP WNP + QA +R R Q++ V ++R + K ++E+++ + Q K L + +P
Sbjct: 558 IYDPDWNPSTDTQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQKQIFKDLLGKKVLSNP 617
Query: 1582 TQIREVNKLGRKEL 1595
R NK EL
Sbjct: 618 RLSRFFNKSCINEL 631
Score = 87.4 bits (215), Expect = 2e-16
Identities = 103/395 (26%), Positives = 164/395 (41%), Gaps = 85/395 (21%)
Query: 896 EGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQS 955
E +K+ E EG + P L +L +Q+ G+RW++ + + K GG+LADDMGLGKT+Q
Sbjct: 129 EHIKKEGKECEGFSV-PGFLWSSLFPYQQDGVRWMLRLYRDEK-GGVLADDMGLGKTIQV 186
Query: 956 LALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFR 1015
+ L A + L++ P ++ W DE
Sbjct: 187 IVFLGALL--HSRVVSKALILCPATIVSQWMDE--------------------------- 217
Query: 1016 SWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPF 1075
WK Y V + + G D V L + K+ + F
Sbjct: 218 -WKRF--YPFVRIFF-----------------GFPNEDCEGVYLMSYEKFKAGVKNF--- 254
Query: 1076 YRNDSEFYRVIL-DEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFL 1134
+ V++ DE IKNK Q + S R+ LSGTPIQNN+GEL+S+ F+
Sbjct: 255 ------LWDVLILDEGHRIKNKNAQITLSVKKARSRGRFVLSGTPIQNNLGELWSIFDFV 308
Query: 1135 RIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMK---KVQVLLRAIMLRRTKTSQID 1191
F+ + V+ + ++ + ++A + ++ L+ +LRRTK SQ+
Sbjct: 309 NPGLLGSHTSFNEEFEEVIRRGGYRNASNLQVEKAYRHSLMLRSLIEPYILRRTK-SQVS 367
Query: 1192 GKPILQLPEKHLKESANKLEGDELEFY-QALESKSRDKAKKMLESKQKQGAYSSIXXXXX 1250
K LP K K L ++E Y + LESK K+L K +++
Sbjct: 368 HK----LPSKEDKIVFCSLTPAQIELYNRVLESK---HIMKVLTGK------ANLLSGIS 414
Query: 1251 XXXQACLHSELV---KIGES---NAKSSKIINGKD 1279
+ C H L+ K+G S ++S NG+D
Sbjct: 415 MLRKVCNHPRLLFPRKLGVSEDCEEEASDEKNGED 449
>ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1256
Score = 91.3 bits (225), Expect = 1e-17
Identities = 67/242 (27%), Positives = 123/242 (50%), Gaps = 12/242 (4%)
Query: 1364 NIPCLVCRKMNNDKEAISYQLFDQVNNLN--YSIDDLRLEYDKM----VAEQKAR---LK 1414
++P + R + + + +L+ +++ S+ D LEY K+ V ++ R L
Sbjct: 1009 DLPPKIIRDITVELGPVQEKLYREIDEKGGKESLGDAELEYGKVDQKNVGFKRTRDLFLA 1068
Query: 1415 NGYTIDYKSLKE-SKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLN 1473
+ +K E S KV+ DII + K++IF QF +++ I K
Sbjct: 1069 VSHIGHFKDSTEVSCKVKALEDIISLCGGEDLGSKILIFFQFKSTIDLVIKDIMKKYKFK 1128
Query: 1474 FLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVE 1533
+ R DGS+ S+ R+ E F +++ ++ + G GL LT A+ V++ + WNPF +
Sbjct: 1129 YSRLDGSVPSAARTKIAEEF-NTGTTQMLFLTTQVGGLGLNLTGADTVVMYEHDWNPFND 1187
Query: 1534 EQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRK 1593
QAMDR HRI Q+R V V R + + ++E++++ LQ+ K + N ++ Q ++ + K
Sbjct: 1188 LQAMDRAHRIGQKRTVNVFRFIARNTLEEKVMNLQSFKMFVAN-SLVSQQNADIETMDTK 1246
Query: 1594 EL 1595
+L
Sbjct: 1247 DL 1248
Score = 74.3 bits (181), Expect = 1e-12
Identities = 75/313 (23%), Positives = 131/313 (40%), Gaps = 72/313 (23%)
Query: 915 LTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTL 974
++V L +Q +G++WL + S G+LADDMGLGKT+Q L L + E + L
Sbjct: 793 ISVKLRDYQMEGVKWL-NFLYSFSLNGILADDMGLGKTLQVLTFLCS---EIYKTNRKVL 848
Query: 975 VVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLA 1034
V+ P ++ WK E +++ +D Y I++ SY+T
Sbjct: 849 VICPSSLTGHWKSEVKKFFPFV--------------AAEIYKREDRDTYSILISSYETFR 894
Query: 1035 SEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIK 1094
+++ W FY V++DE ++
Sbjct: 895 NDYLNFIEKDW------------------------------------FY-VVVDEGHVLR 917
Query: 1095 NKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLN 1154
NK+T I + + L+GTP+ N++ +L SL FL E ++ S LN
Sbjct: 918 NKQTILYSRMNMIRCSRKMVLTGTPVHNSVEDLISLFNFLMPNYIGPEKEYGS-----LN 972
Query: 1155 TKKPYDYNDSERQRAMKKVQVLLRAIM---LRRTKTSQIDGKPILQLPEKHLKESANKLE 1211
K +DSE ++ K++ +L R ++ LRR K + LP K +++ +L
Sbjct: 973 VK----MSDSEIEKTHKRLDLLHRKVLPFILRRLKIDVLK-----DLPPKIIRDITVELG 1023
Query: 1212 GDELEFYQALESK 1224
+ + Y+ ++ K
Sbjct: 1024 PVQEKLYREIDEK 1036
>At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 764
Score = 91.3 bits (225), Expect = 1e-17
Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 2/142 (1%)
Query: 1446 DEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQD-NNYRVMLI 1504
+ K++IFSQ+T +I+ ++ + G R DGS+ +R I+ F + ++ + L+
Sbjct: 540 NHKVLIFSQWTKLLDIMDYYFSEK-GFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLL 598
Query: 1505 SMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRI 1564
S +AG G+ LT A+ IL D WNP ++ QAMDRCHRI Q + V+V+RL S+E R+
Sbjct: 599 STRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRV 658
Query: 1565 VELQNKKKTLVNLAMDPTQIRE 1586
++ K L ++ + Q +
Sbjct: 659 LKRAYSKLKLEHVVIGQGQFHQ 680
Score = 83.2 bits (204), Expect = 3e-15
Identities = 78/300 (26%), Positives = 132/300 (44%), Gaps = 57/300 (19%)
Query: 898 LKEIETEVEGEDLTPNELTVNLLK-HQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSL 956
L E ET ++ ++ LT LK +Q +G++WL+S+ ++ G +LAD MGLGKT+Q++
Sbjct: 180 LTEEETVIKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNGLNG-ILADQMGLGKTIQTI 238
Query: 957 ALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRS 1016
L K LV+AP++ L W +E I+ G +N + R
Sbjct: 239 GFLSHLKGNGLDG--PYLVIAPLSTLSNWFNEIARFTPSINAI---IYHGDKNQRDELRR 293
Query: 1017 WKDLAE-----YDIVLVSYQTLASEFKK---HWPLSWKNGEHQPDVHAVDLKLMNQVKSS 1068
K + + + IV+ SY+ ++ K+ H+P WK
Sbjct: 294 -KHMPKTVGPKFPIVITSYEVAMNDAKRILRHYP--WKY--------------------- 329
Query: 1069 DEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELY 1128
V++DE +KN K + + + + L+GTP+QNN+ EL+
Sbjct: 330 ----------------VVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELW 373
Query: 1129 SLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRA--MKKVQVLLRAIMLRRTK 1186
SL+ F+ + +F S K + E++RA + K+ +LR +LRR K
Sbjct: 374 SLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMK 433
>At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 874
Score = 91.3 bits (225), Expect = 1e-17
Identities = 64/190 (33%), Positives = 103/190 (53%), Gaps = 8/190 (4%)
Query: 1422 KSLKESKKVEMC--LDIIKKVTDS--NTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRY 1477
KS + V+ C + ++K+ S + +K+++FS +IL F+ + G +F R
Sbjct: 528 KSFMDLSDVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRK-GYSFARL 586
Query: 1478 DGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAM 1537
DGS ++ R + ++ F + +V LIS KAG GL L AN V++ DP WNP + QA
Sbjct: 587 DGSTPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQ 646
Query: 1538 DRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMD---PTQIREVNKLGRKE 1594
DR R Q+R V V RLL S+E+ + Q K+ L N+A+ T+ E + ++
Sbjct: 647 DRSFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAVAGKMETRYFEGVQDCKEF 706
Query: 1595 LGFLFGLNSL 1604
G LFG+++L
Sbjct: 707 QGELFGISNL 716
Score = 76.6 bits (187), Expect = 3e-13
Identities = 71/291 (24%), Positives = 119/291 (40%), Gaps = 55/291 (18%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P + LL+HQR+G++++ ++ K++ GG+L DDMGLGKT+Q++A L A + A +
Sbjct: 144 PASINCRLLEHQREGVKFMYNLYKNN-HGGILGDDMGLGKTIQTIAFLAAVYGKDGDAGE 202
Query: 972 T---------TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAE 1022
+ L++ P +++ W+ E G N K
Sbjct: 203 SCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYH----GSNRDMILEKLK-ARG 257
Query: 1023 YDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEF 1082
++++ S+ T + ++W+
Sbjct: 258 VEVLVTSFDTFRIQGPVLSGINWE------------------------------------ 281
Query: 1083 YRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKE 1142
VI DEA +KN+K++ +AC I + R L+GT +QN I EL++L ++
Sbjct: 282 -IVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTR 340
Query: 1143 AKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQ---VLLRAIMLRRTKTSQI 1190
F L + + Q A K+ Q LLR MLRRTK I
Sbjct: 341 EHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETI 391
>At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1187
Score = 90.9 bits (224), Expect = 1e-17
Identities = 65/217 (29%), Positives = 108/217 (48%), Gaps = 6/217 (2%)
Query: 1383 QLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTD 1442
Q+FD N Y ID +R + + R + DY + + S K+++ +++K
Sbjct: 684 QIFDGNRNSLYGIDVMRKICNH--PDLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQ 741
Query: 1443 SNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVM 1502
++++FSQ +IL F+ N ++ R DG QR A I+ F + V
Sbjct: 742 QG--HRVLLFSQTQQMLDILESFLVAN-EYSYRRMDGLTPVKQRMALIDEFNNSEDMFVF 798
Query: 1503 LISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVED 1562
+++ K G G LT AN VI+ DP WNP + QA +R RI Q+++V V+RL+ + ++E+
Sbjct: 799 VLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEE 858
Query: 1563 RIVELQNKKKTLVN-LAMDPTQIREVNKLGRKELGFL 1598
++ Q K L N + +P Q R K+L L
Sbjct: 859 KVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFIL 895
Score = 68.6 bits (166), Expect = 8e-11
Identities = 73/299 (24%), Positives = 121/299 (40%), Gaps = 38/299 (12%)
Query: 904 EVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANK 963
++EG P + L +QR G++WL + + GG++ D+MGLGKT+Q L+ L
Sbjct: 370 QLEGGLNIPECIFRKLFDYQRVGVQWLWELH-CQRAGGIIGDEMGLGKTIQVLSFL--GS 426
Query: 964 PEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEY 1023
K ++++ PV +LR W+ E I +S + +E
Sbjct: 427 LHFSKMYKPSIIICPVTLLRQWRRE---AQKWYPDFHVEILHDSAQDSGHGKGQGKASES 483
Query: 1024 DIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDE-YFSPFYRN---- 1078
D Y + +S H P S KN + L+N+V +S+ Y
Sbjct: 484 D-----YDSESSVDSDHEPKS-KNTKKWD-------SLLNRVLNSESGLLITTYEQLRLQ 530
Query: 1079 -----DSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRF 1133
+ E+ +LDE I+N + C + + R ++G PIQN + EL+SL F
Sbjct: 531 GEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDF 590
Query: 1134 L------RIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTK 1186
+ +P + E +G N S R ++ L+ +LRR K
Sbjct: 591 VFPGKLGVLPVFEAEFSVPITVGGYANAS---PLQVSTAYRCAVVLRDLIMPYLLRRMK 646
>7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1027
Score = 90.9 bits (224), Expect = 1e-17
Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 6/182 (3%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT D + S K+ + ++ K+ + + +++IFSQ T +IL + N+ R
Sbjct: 420 YTTDTHLVYNSGKMAILDKLLPKLQEQGS--RVLIFSQMTRMLDILEDYCHWR-NYNYCR 476
Query: 1477 YDGSMSSSQRSACIESFYQDNNYRVM-LISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
DG R+ I+ F DN+ + + ++S +AG G+ L A+ VI+ D WNP ++ Q
Sbjct: 477 LDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQ 536
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQI--REVNKLGRK 1593
AMDR HRI Q+++V V RL+ + +VE++IVE K L + + ++ N+L +
Sbjct: 537 AMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKD 596
Query: 1594 EL 1595
E+
Sbjct: 597 EM 598
>Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1849
Score = 90.5 bits (223), Expect = 2e-17
Identities = 53/157 (33%), Positives = 89/157 (55%), Gaps = 3/157 (1%)
Query: 1448 KLVIFSQFTMFFEILGH-FIKKNL-GLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLIS 1505
+++IF Q +I+ H +K +L + +LR DGS+ QR + + F D + V+L++
Sbjct: 1646 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1705
Query: 1506 MKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIV 1565
G GL LT A+ V+ + WNP + QAMDR HRI Q+R V V+RL+ + ++E++I+
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 1566 ELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLFGLN 1602
LQ K + N + + + +G +L LF L+
Sbjct: 1766 GLQKFKMNIANTVIS-QENSSLQSMGTDQLLDLFTLD 1801
Score = 87.0 bits (214), Expect = 2e-16
Identities = 96/359 (26%), Positives = 151/359 (41%), Gaps = 82/359 (22%)
Query: 891 LRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLG 950
L LL+G K ++ P + L K+Q+ G+ WL + K K G+L DDMGLG
Sbjct: 1244 LEQLLDGKKLENYKI------PVPINAELRKYQQDGVNWLAFLNKY-KLHGILCDDMGLG 1296
Query: 951 KTVQSLALLMAN-----KPEPKSAIKT-----TLVVAPVAVLRVWKDEXXXXXXXXXXXX 1000
KT+QS+ +L + + +S + +LVV P + W DE
Sbjct: 1297 KTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEV----------- 1345
Query: 1001 XXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLK 1060
KF S + L N H ++
Sbjct: 1346 -----------GKFCSREYL--------------------------NPLHYTGPPTERIR 1368
Query: 1061 LMNQVKSSDEYFSPF--YRNDSEFYR------VILDEAQNIKNKKTQAAKACCTISSTFR 1112
L +QVK + + + RND +F+R ILDE IKN KT+ +KA +++ +R
Sbjct: 1369 LQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYR 1428
Query: 1113 WALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKK 1172
LSGTPIQNN+ EL+SL FL E +F + G + + + E++ +
Sbjct: 1429 IILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLA 1488
Query: 1173 VQVLLRAI---MLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDK 1228
+ L R + +LRR K + LP K +++ L +++ Y+ +KSR K
Sbjct: 1489 MDALHRQVLPFLLRRMKEDVLQ-----DLPPKIIQDYYCTLSPLQVQLYEDF-AKSRAK 1541
>YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1120
Score = 90.1 bits (222), Expect = 3e-17
Identities = 53/179 (29%), Positives = 99/179 (54%), Gaps = 4/179 (2%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT D + S K+ + ++K++ + + +++IFSQ + +IL + + R
Sbjct: 479 YTTDEHLIFNSGKMIILDKLLKRLKEKGS--RVLIFSQMSRLLDILEDYCYFR-DFEYCR 535
Query: 1477 YDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
DGS S +R I+ + + N+ + V L++ +AG G+ L A+ VIL D WNP + Q
Sbjct: 536 IDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQ 595
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKE 1594
AMDR HRI Q+++V+V+R + + ++E++++E +K L L + ++ LG +
Sbjct: 596 AMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSK 654
>YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1085
Score = 90.1 bits (222), Expect = 3e-17
Identities = 56/171 (32%), Positives = 93/171 (53%), Gaps = 8/171 (4%)
Query: 1420 DYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKN----LGLNFL 1475
DY K S K+++ ++ + K ++F+Q +IL FI LN+L
Sbjct: 643 DYGDPKRSGKMQVVKQLL--LLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYL 700
Query: 1476 RYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
R DG+ + R + ++ F + ++ V L++ + G G+ LT AN +I+ DP WNP + Q
Sbjct: 701 RMDGTTNIKGRQSLVDRF-NNESFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQ 759
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVN-LAMDPTQIR 1585
A +R RI Q+REV ++RL++ S+E++I Q K+ L N + DP Q R
Sbjct: 760 ARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKR 810
Score = 78.2 bits (191), Expect = 1e-13
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 27/261 (10%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P E+ L +Q+ ++WL + + + GG++ D+MGLGKT+Q +A + A S +
Sbjct: 290 PGEIYSLLFNYQKTCVQWLYELYQQNC-GGIIGDEMGLGKTIQVIAFIAALH---HSGLL 345
Query: 972 T--TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVS 1029
T L+V P V++ W +E G G + KF+ + E D+ +
Sbjct: 346 TGPVLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFK----MDENDLENLI 401
Query: 1030 YQTLASEFK-KHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFY-----RNDS--- 1080
+ S+F + W S + + + +D KL+++V + Y +D
Sbjct: 402 MNSKPSDFSYEDWKNSTRTKKALESSYHLD-KLIDKVVTDGHILITTYVGLRIHSDKLLK 460
Query: 1081 -EFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFL----- 1134
++ +LDE I+N ++ + C + + R LSGTPIQNN+ EL+SL F+
Sbjct: 461 VKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKL 520
Query: 1135 -RIPPYNKEAKFHSDIGAVLN 1154
+P + ++ +IG N
Sbjct: 521 GTLPVFQQQFVIPINIGGYAN 541
>7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1861
Score = 89.7 bits (221), Expect = 3e-17
Identities = 53/161 (32%), Positives = 91/161 (55%), Gaps = 3/161 (1%)
Query: 1441 TDSNTDEKLVIFSQFTMFFEILGH-FIKKNL-GLNFLRYDGSMSSSQRSACIESFYQDNN 1498
T+S + + +IF Q +I+ ++++L + +LR DGS+ +SQR + +F D +
Sbjct: 1646 TESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPS 1705
Query: 1499 YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKM 1558
V+L++ G GL LT A+ VI + WNP + QAMDR HRI Q++ V V+RL+ +
Sbjct: 1706 IDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRN 1765
Query: 1559 SVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLF 1599
S+E++I+ LQ K N + + + +G ++ LF
Sbjct: 1766 SLEEKIMGLQKFKILTANTVVS-AENASLQTMGTSQIFDLF 1805
Score = 83.2 bits (204), Expect = 3e-15
Identities = 90/365 (24%), Positives = 151/365 (40%), Gaps = 59/365 (16%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P ++V L +Q+ G+ WL + K + G +L DDMGLGKT+Q++ +L + ++A
Sbjct: 1281 PVPISVELRCYQQAGINWLWFLNKYNLHG-ILCDDMGLGKTLQTICILAGDHMHRQTANL 1339
Query: 972 T---TLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLA-EYDIVL 1027
+LV+ P + W E + G K RS D+ + ++V+
Sbjct: 1340 ANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRS--DIGTKCNLVV 1397
Query: 1028 VSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVIL 1087
SY T V+ ++FS + F +L
Sbjct: 1398 ASYDT--------------------------------VRKDIDFFSGIH-----FNYCVL 1420
Query: 1088 DEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHS 1147
DE IKN KT+++KA + + R LSGTPIQNN+ EL+SL FL E +F
Sbjct: 1421 DEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQ 1480
Query: 1148 DIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAI---MLRRTKTSQIDGKPILQLPEKHLK 1204
+ + + + E++ + ++ L R + +LRR K + LP K +
Sbjct: 1481 RFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLK-----DLPPKITQ 1535
Query: 1205 ESANKLEGDELEFYQALESKS-RDKAKKMLESK------QKQGAYSSIXXXXXXXXQACL 1257
+ +L +L Y+ +K +D K+ +S + A + I C
Sbjct: 1536 DLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCN 1595
Query: 1258 HSELV 1262
H +LV
Sbjct: 1596 HPKLV 1600
>YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 778
Score = 89.0 bits (219), Expect = 6e-17
Identities = 67/229 (29%), Positives = 108/229 (46%), Gaps = 12/229 (5%)
Query: 1372 KMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVE 1431
K N E + +L + + L ID L Y + + L+ LK S K++
Sbjct: 554 KKNLQMEISNKKLQNMMMQLRQIIDSTFLFYFPYLHPEDLTLET-------LLKTSGKLQ 606
Query: 1432 MCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIE 1491
+ +I + K++I+SQF +++ + N F R DGS+++ R +E
Sbjct: 607 ILQKLIPPLISEG--HKVLIYSQFVNMLDLIEDWCDLNSFATF-RIDGSVNNETRKDQLE 663
Query: 1492 SFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVY 1550
F + + + L+S +A G+ L A+ V+L D WNP V+ QAMDRCHRI QE V
Sbjct: 664 KFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVI 723
Query: 1551 VHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLF 1599
V+RL ++E I+ K+ L + + + + KL E GF F
Sbjct: 724 VYRLCCDNTIEHVILTRAANKRNLERMVIQMGKFNNLKKLALNE-GFFF 771
Score = 81.3 bits (199), Expect = 1e-14
Identities = 94/390 (24%), Positives = 163/390 (41%), Gaps = 74/390 (18%)
Query: 830 EQYANDDDLAVIGGKTI-----KNEEFVTYXXXXXXXXXXXXXNYKTRIDHSLRMTNIYN 884
EQ + DD+L+ + KT+ K EFV + + ++ N +
Sbjct: 110 EQKSLDDELSEMDTKTVSLKLKKLNEFVRQSQVYSSIIADTLLHRSNEVANANTKDNSNS 169
Query: 885 TADASSLRDLLEGLKEI----ETEVEGEDLT-----PNELTVN---LLK------HQRQG 926
+ S + K I + + + ED T P++ + LLK +Q +G
Sbjct: 170 DDEEHSSKKRKTKKKSITDFFKKQKKNEDTTTQNGAPDDAAIKQPRLLKNCILKPYQLEG 229
Query: 927 LRWLVSMEKSSKRGGLLADDMGLGKTVQSLALL-MANKPEPKSAIKTTLVVAPVAVLRVW 985
L WL+++ ++ G +LAD+MGLGKTVQS+ALL + + K LV AP++ L W
Sbjct: 230 LNWLITLYENGLNG-ILADEMGLGKTVQSIALLAFIYEMDTKGPF---LVTAPLSTLDNW 285
Query: 986 KDEXXXXXXXXXXXXXXIFGGGENNSSKFRS-WKDLAEYDIVLVSYQTLASEFKKHWPLS 1044
+E G + S+K ++ +K IV+ SY+ + + +
Sbjct: 286 MNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEIILRDTDLIMSQN 345
Query: 1045 WKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKAC 1104
WK +I+DE +KN + K
Sbjct: 346 WK-------------------------------------FLIVDEGHRLKNINCRLIKEL 368
Query: 1105 CTISSTFRWALSGTPIQNNIGELYSLIRFLR------IPPYNKEAKFHS-DIGAVLNTKK 1157
I+++ R L+GTP+QNN+ EL+SL+ F+ +NK F S ++G+ N++
Sbjct: 369 KKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEA 428
Query: 1158 PYD-YNDSERQRAMKKVQVLLRAIMLRRTK 1186
ND ++ + + +L+ +LRR K
Sbjct: 429 LNKLINDELQKNLISNLHTILKPFLLRRLK 458
>Hs4557451 [R] KOG0383 Predicted helicase
Length = 1944
Score = 89.0 bits (219), Expect = 6e-17
Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Query: 1405 MVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGH 1464
+ A + +L +G +K S K+ + +++K+ + +++IFSQ T ++L
Sbjct: 1037 VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQG--HRVLIFSQMTKMLDLLED 1094
Query: 1465 FIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRV-MLISMKAGNSGLTLTCANHVIL 1523
F+ G + R DG ++ + R I+ F + L+S +AG G+ L A+ VI+
Sbjct: 1095 FLDYE-GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVII 1153
Query: 1524 ADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQ 1583
D WNP + QA R HRI Q +V ++R + + SVE+RI ++ +K L +L + P
Sbjct: 1154 FDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGL 1213
Query: 1584 IREVNKLGRKEL 1595
+ + ++EL
Sbjct: 1214 GSKAGSMSKQEL 1225
>YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1129
Score = 88.6 bits (218), Expect = 7e-17
Identities = 88/330 (26%), Positives = 149/330 (44%), Gaps = 77/330 (23%)
Query: 911 TPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALL-----MANKPE 965
+P + L +Q QG+ WLVS+ K+ K G+LAD+MGLGKT+Q+++ L + P
Sbjct: 188 SPAYVNGQLRPYQIQGVNWLVSLHKN-KIAGILADEMGLGKTLQTISFLGYLRYIEKIPG 246
Query: 966 PKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLA-EYD 1024
P LV+AP + L W E I G + ++ K L ++D
Sbjct: 247 P------FLVIAPKSTLNNWLREINRWTPDVNAF---ILQGDKEERAELIQKKLLGCDFD 297
Query: 1025 IVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYR 1084
+V+ SY+ + E ++W EY
Sbjct: 298 VVIASYEIIIREKSPLKKINW------------------------EY------------- 320
Query: 1085 VILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAK 1144
+I+DEA IKN+++ ++ +S R ++GTP+QNN+ EL++L+ FL +P +A+
Sbjct: 321 IIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFL-LPDIFSDAQ 379
Query: 1145 FHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLK 1204
D + +T++ D + +K++ +L+ +LRR K+ D + L LP+K
Sbjct: 380 DFDDWFSSESTEEDQD-------KIVKQLHTVLQPFLLRRIKS---DVETSL-LPKK--- 425
Query: 1205 ESANKLEGDELEFYQALESKSRDKAKKMLE 1234
EL Y + S + KK+LE
Sbjct: 426 ---------ELNLYVGMSSMQKKWYKKILE 446
Score = 88.2 bits (217), Expect = 1e-16
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 7/182 (3%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT D + + K+++ ++KK+ + + +++IFSQ + +IL + + R
Sbjct: 491 YTTDEHLVYNAAKLQVLDKLLKKLKEEGS--RVLIFSQMSRLLDILEDYCYFR-NYEYCR 547
Query: 1477 YDGSMSSSQRSACIESFYQ-DNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
DGS + R I+ + D+ V L++ +AG G+ LT A+ V+L D WNP + Q
Sbjct: 548 IDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQ 607
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQI---REVNKLGR 1592
AMDR HRI Q+++V V RL+ SVE++I+E +K L L + + ++ NK
Sbjct: 608 AMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKKENKADS 667
Query: 1593 KE 1594
K+
Sbjct: 668 KD 669
>SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 973
Score = 88.6 bits (218), Expect = 7e-17
Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 25/266 (9%)
Query: 1334 CLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLVCRKMNNDKEAISYQLFDQVNNLN- 1392
C+ PY+ A+ PK + V L C+ ++A YQ F Q +++
Sbjct: 527 CMLRDLISPYLLRRMKLDVAADLPKKSEQV----LFCKLTPLQRKA--YQDFLQGSDMQK 580
Query: 1393 ---------YSIDDLR--LEYDKMVAEQKARLKNGYTI-DYKSLKESKKVEMCLDIIKKV 1440
Y ID LR + +V + K Y D + + K + L + KK
Sbjct: 581 ILNGKRQMLYGIDILRKICNHPDLVTREYLLHKEDYNYGDPEKSGKLKVIRALLTLWKK- 639
Query: 1441 TDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR 1500
+ ++FSQ +IL +K +++ R DGS S + R +++F ++ +
Sbjct: 640 ----QGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFD 695
Query: 1501 VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSV 1560
V L++ + G G+ LT A+ VIL DP WNP + QA +R R+ Q+++V V+RL+ ++
Sbjct: 696 VFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTI 755
Query: 1561 EDRIVELQNKKKTLVN-LAMDPTQIR 1585
E++I Q K+ L N + DP Q R
Sbjct: 756 EEKIYHRQIFKQFLTNKILKDPKQRR 781
>CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 971
Score = 88.6 bits (218), Expect = 7e-17
Identities = 56/181 (30%), Positives = 99/181 (53%), Gaps = 5/181 (2%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
+T D + S K+ + ++ K + + +++IFSQF+ ++L F + R
Sbjct: 386 FTTDQHLVDNSGKMVVLDKLLMKFKEQGS--RVLIFSQFSRMLDLLEDFCWWR-HYEYCR 442
Query: 1477 YDGSMSSSQRSACIESFYQ-DNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
DGS RS IE++ D+ + +++ +AG G+ L A+ VI+ D WNP + Q
Sbjct: 443 LDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQ 502
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNK-LGRKE 1594
AMDR HRI Q+++V V RL+ + +V++RI+E K L N+ + ++ E K LG+ +
Sbjct: 503 AMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGD 562
Query: 1595 L 1595
+
Sbjct: 563 M 563
>CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1785
Score = 88.2 bits (217), Expect = 1e-16
Identities = 50/154 (32%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 1421 YKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGS 1480
+ S+K+S KVEM + S T+ ++++F+Q ++ +F+ + G+ + G+
Sbjct: 514 FGSIKDSGKVEMTFKLFDDWFKSPTN-RVILFTQRRTVITMMEYFLAEK-GIKCVSLTGA 571
Query: 1481 MSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRC 1540
S++ R I+ F D + +V L++ +AG GL LTCAN VI+ DP WNP + QA +R
Sbjct: 572 DSAAARPKIIKKFEDDVSIKVFLMTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRI 631
Query: 1541 HRISQEREVYVHRLLIKMSVEDRIVELQNKKKTL 1574
+R+ Q +V ++RL+ ++ED Q +K+ L
Sbjct: 632 YRMGQTNDVAIYRLVSNGTIEDLKFFKQVQKENL 665
Score = 61.6 bits (148), Expect = 1e-08
Identities = 37/120 (30%), Positives = 64/120 (52%), Gaps = 6/120 (5%)
Query: 1085 VILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAK 1144
VILDE I+N+ T+ + A + +T R+ L+GTP QN + E + L+ F+ + A
Sbjct: 335 VILDEGHYIRNENTKCSIAMRKLMTTQRFILTGTPFQNRLSEFWKLVDFVHPGRLSDSAT 394
Query: 1145 FHSDIGAVLNTKKPYDYNDSERQRAMK---KVQVLLRAIMLRRTKTSQIDGKPILQLPEK 1201
FH + ++N + + +A + + + ++ ++LRR Q D K +LQLPEK
Sbjct: 395 FHRNFTHIINAGANLNCSPEAAAKAYECLVALHIAVKPLILRRL---QEDHKEVLQLPEK 451
>SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 852
Score = 87.8 bits (216), Expect = 1e-16
Identities = 45/140 (32%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Query: 1445 TDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQ-DNNYRVML 1503
TD+K+V+ S +T ++ + G LR DG+M+ ++R +++F + + V L
Sbjct: 626 TDDKIVLISNYTSTLDLFEQLCRAR-GYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFL 684
Query: 1504 ISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDR 1563
+S KAG G+ L AN +IL DP WNP ++QA+ R R Q+++ +V+R + ++E++
Sbjct: 685 LSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEK 744
Query: 1564 IVELQNKKKTLVNLAMDPTQ 1583
I + Q+ K++L + +D Q
Sbjct: 745 IFQRQSHKQSLSSCVVDEAQ 764
>Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1033
Score = 87.8 bits (216), Expect = 1e-16
Identities = 61/194 (31%), Positives = 101/194 (51%), Gaps = 18/194 (9%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT D + S K+ + ++ K+ + + +++IFSQ T +IL + G + R
Sbjct: 454 YTTDEHIVSNSGKMVVLDKLLAKLKEQGS--RVLIFSQMTRLLDILEDYCMWR-GYEYCR 510
Query: 1477 YDGSMSSSQRS------------ACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVIL 1523
DG +R IE+F N+ + + ++S +AG G+ L A+ VIL
Sbjct: 511 LDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVIL 570
Query: 1524 ADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQ 1583
D WNP V+ QAMDR HRI Q++ V V RL+ +VE+RIVE K L ++ + +
Sbjct: 571 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 630
Query: 1584 I--REVNKLGRKEL 1595
+ ++ NKL ++E+
Sbjct: 631 LIDQQSNKLAKEEM 644
Score = 61.2 bits (147), Expect = 1e-08
Identities = 68/290 (23%), Positives = 116/290 (39%), Gaps = 83/290 (28%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAP 978
L +Q +GL WL+S+ ++ G +LAD++ P P +V+ P
Sbjct: 183 LRDYQIRGLNWLISLYENGVNG-ILADEI----------------PGPH------MVLVP 219
Query: 979 VAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASE-- 1036
+ L W +E G + ++ R E+D+ + SY+ + E
Sbjct: 220 KSTLHNWMNEFKRWVPSLRVIC--FVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKS 277
Query: 1037 -FKK-HWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIK 1094
FKK HW +++DEA IK
Sbjct: 278 VFKKFHWRY-----------------------------------------LVIDEAHRIK 296
Query: 1095 NKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLN 1154
N+K++ ++ ST R L+GTP+QNN+ EL++L+ FL +N D + +
Sbjct: 297 NEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSA----DDFDSWFD 352
Query: 1155 TKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLK 1204
TK N Q+ ++++ +L+ +LRR KT P P+K +K
Sbjct: 353 TK-----NCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLP----PKKEIK 393
>Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1054
Score = 87.8 bits (216), Expect = 1e-16
Identities = 61/194 (31%), Positives = 101/194 (51%), Gaps = 18/194 (9%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT D + S K+ + ++ K+ + + +++IFSQ T +IL + G + R
Sbjct: 475 YTTDEHIVSNSGKMVVLDKLLAKLKEQGS--RVLIFSQMTRLLDILEDYCMWR-GYEYCR 531
Query: 1477 YDGSMSSSQRS------------ACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVIL 1523
DG +R IE+F N+ + + ++S +AG G+ L A+ VIL
Sbjct: 532 LDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVIL 591
Query: 1524 ADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQ 1583
D WNP V+ QAMDR HRI Q++ V V RL+ +VE+RIVE K L ++ + +
Sbjct: 592 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 651
Query: 1584 I--REVNKLGRKEL 1595
+ ++ NKL ++E+
Sbjct: 652 LIDQQSNKLAKEEM 665
Score = 85.5 bits (210), Expect = 6e-16
Identities = 79/295 (26%), Positives = 129/295 (42%), Gaps = 72/295 (24%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALL-----MANKPEPKSAIKTT 973
L +Q +GL WL+S+ ++ G +LAD+MGLGKT+Q++ALL N P P
Sbjct: 183 LRDYQIRGLNWLISLYENGVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPGPH------ 235
Query: 974 LVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTL 1033
+V+ P + L W +E G + ++ R E+D+ + SY+ +
Sbjct: 236 MVLVPKSTLHNWMNEFKRWVPSLRVIC--FVGDKDARAAFIRDEMMPGEWDVCVTSYEMV 293
Query: 1034 ASE---FKK-HWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDE 1089
E FKK HW +++DE
Sbjct: 294 IKEKSVFKKFHWRY-----------------------------------------LVIDE 312
Query: 1090 AQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDI 1149
A IKN+K++ ++ ST R L+GTP+QNN+ EL++L+ FL +N D
Sbjct: 313 AHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSA----DDF 368
Query: 1150 GAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLK 1204
+ +TK N Q+ ++++ +L+ +LRR KT P P+K +K
Sbjct: 369 DSWFDTK-----NCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLP----PKKEIK 414
>At4g31900 [R] KOG0383 Predicted helicase
Length = 1067
Score = 87.8 bits (216), Expect = 1e-16
Identities = 58/181 (32%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 1422 KSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEIL-GHFIKKNLGLNFLRYDGS 1480
K L+ S K+++ ++ K+ + +++I++QF +L +F KN N+ R DG
Sbjct: 408 KLLEASGKLQLLDKMMVKLKEQG--HRVLIYTQFQHTLYLLEDYFTFKNW--NYERIDGK 463
Query: 1481 MSSSQRSACIESFYQDNNYRV-MLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDR 1539
+S +R I+ F +N+ R L+S +AG G+ L A+ VI+ D WNP + QAM R
Sbjct: 464 ISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMAR 523
Query: 1540 CHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMD-----PTQIREVNKLGRKE 1594
HR+ Q +V ++RL+ K +VE+R++E+ K L +L + ++ ++ K G KE
Sbjct: 524 VHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQHLCQDELDDIIKYGSKE 583
Query: 1595 L 1595
L
Sbjct: 584 L 584
Score = 57.8 bits (138), Expect = 1e-07
Identities = 40/106 (37%), Positives = 58/106 (53%), Gaps = 4/106 (3%)
Query: 883 YNTADASSLRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLRWLVSMEKSSKRGGL 942
+ ++SS RD + E + DLTP LT L +Q +GL +L S K +
Sbjct: 189 FKDINSSSRRDKYVENERNREEFKQFDLTPEFLTGTLHTYQLEGLNFL-RYSWSKKTNVI 247
Query: 943 LADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDE 988
LAD+MGLGKT+QS+A L + E + LVVAP++ +R W+ E
Sbjct: 248 LADEMGLGKTIQSIAFLASLFEE---NLSPHLVVAPLSTIRNWERE 290
>YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1489
Score = 87.0 bits (214), Expect = 2e-16
Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
+ ES K+ +++ K+ +++I+ Q T +++ ++ N +R DGS
Sbjct: 1295 ITESAKLRKLDELLVKLKSEG--HRVLIYFQMTKMMDLMEEYLTYRQ-YNHIRLDGSSKL 1351
Query: 1484 SQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRI 1543
R + + + V L+S +AG G+ LT A+ VI D WNP ++ QAMDR HR+
Sbjct: 1352 EDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRL 1411
Query: 1544 SQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMD 1580
Q R+V V+RLL++ ++E+R+ + +K+ + + M+
Sbjct: 1412 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVME 1448
Score = 83.2 bits (204), Expect = 3e-15
Identities = 85/382 (22%), Positives = 159/382 (41%), Gaps = 62/382 (16%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P L L ++Q +GL WL ++ G +LAD+MGLGKTVQS+++L A+ E +
Sbjct: 699 PKILACTLKEYQLKGLNWLANLYDQGING-ILADEMGLGKTVQSISVL-AHLAENHNIWG 756
Query: 972 TTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDL--------AEY 1023
LVV P + L W +E + G N+ R + D A +
Sbjct: 757 PFLVVTPASTLHNWVNEISKFLPQFKILP---YWGNANDRKVLRKFWDRKNLRYNKNAPF 813
Query: 1024 DIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFY 1083
+++ SYQ + ++ + W+
Sbjct: 814 HVMVTSYQMVVTDANYLQKMKWQY------------------------------------ 837
Query: 1084 RVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEA 1143
+ILDEAQ IK+ ++ K + R L+GTPIQN++ EL++L+ F+ ++
Sbjct: 838 -MILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHD 896
Query: 1144 KFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTS-------QIDGKPIL 1196
+F+ + + + N Q+ ++++ ++L+ MLRR K + +I+ +
Sbjct: 897 EFNEWFSKDIESHA--EANTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLC 954
Query: 1197 QLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQAC 1256
L ++ K L+ Y A+E+ + + + S G+ ++ + C
Sbjct: 955 DLTQRQAK-LYQVLKSQISTNYDAIENAATNDSTS--NSASNSGSDQNLINAVMQFRKVC 1011
Query: 1257 LHSELVKIGESNAKSSKIINGK 1278
H +L + + ++ S GK
Sbjct: 1012 NHPDLFERADVDSPFSFTTFGK 1033
>CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1274
Score = 87.0 bits (214), Expect = 2e-16
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 23/207 (11%)
Query: 1408 EQKARLKNGYTID----YKS--LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEI 1461
E+++R+K +T + Y+ L+ K+ + L+I+ + T EK++IFSQ ++
Sbjct: 751 EKESRMKYDWTFELFEKYQEGVLENGYKIVISLEILDESTQIG--EKILIFSQNLTALDM 808
Query: 1462 LGHFIKKNL-------------GLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKA 1508
L +KK N+LR DG+ S + R I F + + LIS +A
Sbjct: 809 LEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADREKLINRFNSEPGLSLFLISTRA 868
Query: 1509 GNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQ 1568
G+ G+ L AN I+ D WNP + QA+ R +R Q+++ +V+RL++ S+E I Q
Sbjct: 869 GSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQQKKTFVYRLIMDNSMERSIFNRQ 928
Query: 1569 NKKKTLVNLAMDPTQIREVNKLGRKEL 1595
K L +D Q+ + +KEL
Sbjct: 929 ISKHGLQQRVVDDAQVDA--NISQKEL 953
Score = 54.3 bits (129), Expect = 2e-06
Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 42/308 (13%)
Query: 913 NELTVNLLKHQRQGLRWLVS--------MEKSSKRGGLLADDMGLGKTVQSLALLMANKP 964
+ LT L HQ G+R++ +KS G +LA MGLGKT+Q +
Sbjct: 250 SHLTHVLQPHQLGGIRFMYDNTIESLGEYKKSDGFGCILAHSMGLGKTIQVITFSEIFLR 309
Query: 965 EPKSAIKTTLVVAPVAVLRVWKDEXXX-----XXXXXXXXXXXIFGGGENNSSKFRSWKD 1019
K+ K LV+ P+ ++ W E +F G+ + +
Sbjct: 310 ATKA--KKVLVIVPINTIQNWYSEYDKWIPKFSDTGDRIRSFEVFLLGDGVKTFDQRVNL 367
Query: 1020 LAEYD----IVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAV----------DLKLMNQV 1065
+ ++D ++LV Y K P K G + ++ + D KL ++
Sbjct: 368 IEQWDQTGGVMLVGYDMFRLLIKMTLPKKQKKGRPKLNLSGISSGFSKDSSEDQKLRDEE 427
Query: 1066 KSSDEYFSPFYRNDSEFYR-------------VILDEAQNIKNKKTQAAKACCTISSTFR 1112
+ F+ R E Y V+ DE IKN + + I++ R
Sbjct: 428 LEFETGFTSGGRVRQEAYSLIRSALLEPGPDLVVCDEGHKIKNITAEISMTLGAINTKRR 487
Query: 1113 WALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKK 1172
L+G P+QNN+ E + +I F+R F + + D + + + A+++
Sbjct: 488 IVLTGYPLQNNLLEYFCMIDFVRPKYLGTRKSFIDRFEKPIKNGQCVDSSPDDVKIALQR 547
Query: 1173 VQVLLRAI 1180
VL+ +
Sbjct: 548 THVLVELV 555
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 86.7 bits (213), Expect = 3e-16
Identities = 49/128 (38%), Positives = 73/128 (56%), Gaps = 2/128 (1%)
Query: 1445 TDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQ-DNNYRVML 1503
T +++IF Q T +I+ F++ + + +LR DG S +RS + F D+ Y +
Sbjct: 1102 TGHRVLIFFQMTQIMDIMEDFLRY-INIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFI 1160
Query: 1504 ISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDR 1563
+S +AG GL L A+ VI+ D WNP + QA DR HRI Q+ EV + RL+ SVE+
Sbjct: 1161 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEV 1220
Query: 1564 IVELQNKK 1571
I+E KK
Sbjct: 1221 ILERAYKK 1228
Score = 80.5 bits (197), Expect = 2e-14
Identities = 82/344 (23%), Positives = 151/344 (43%), Gaps = 55/344 (15%)
Query: 883 YNTADASSLRDLLEGLKEIETEVEGEDLTPNELTVNLLK-HQRQGLRWLVSMEKSSKRGG 941
Y+ D +S D I+ +++ + P+ L LK +Q +GL+W+VS+ ++ G
Sbjct: 733 YDDDDDNSNVDYYNVAHRIKEDIKKQ---PSILVGGTLKDYQIKGLQWMVSLF-NNHLNG 788
Query: 942 LLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXX 1001
+LAD+MGLGKT+Q+++LL E K+ LV+ P++ L W E
Sbjct: 789 ILADEMGLGKTIQTISLL-TYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTIS- 846
Query: 1002 XIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKL 1061
F G N ++ E+D+VL +++ + E L
Sbjct: 847 --FKGSPNERKAKQAKIRAGEFDVVLTTFEYIIKE----------------------RAL 882
Query: 1062 MNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCT-ISSTFRWALSGTPI 1120
+++VK + +I+DE +KN +++ + T + +R L+GTP+
Sbjct: 883 LSKVK---------------WVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPL 927
Query: 1121 QNNIGELYSLIRFLRIPPYNKEAKFHSDIG---AVLNTKKPYDYNDSERQRAMKKVQVLL 1177
QNN+ EL++L+ F+ +N F A + + ++ E ++++ +L
Sbjct: 928 QNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVL 987
Query: 1178 RAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQAL 1221
R +LRR K +LP+K K K+ + YQ +
Sbjct: 988 RPFLLRRLKKDVEK-----ELPDKVEKVVKCKMSALQQIMYQQM 1026
>YLR247c [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1556
Score = 86.7 bits (213), Expect = 3e-16
Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 42/245 (17%)
Query: 941 GLLADDMGLGKTVQSLALLMANKPEPKSA--------------IKTTLVVAPVAVLRVWK 986
G+LA++MGLGKT++ L+L++ N+ + K + KTTL++ P A+L+ W
Sbjct: 387 GVLAEEMGLGKTIEILSLILLNRRKLKDSEATFIDDENRTITKTKTTLIICPNAILKQWL 446
Query: 987 DEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKD-----LAEYDIVLVSYQTLASEFKKHW 1041
+E G N K D L +YDI++ SY +A+E
Sbjct: 447 EEIELHANSLKWYTYR----GYNEIMKDCKTVDEAVQQLCQYDIIVTSYNIIATEVH--- 499
Query: 1042 PLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAA 1101
+ E + + LK +Y SP +FYR+ILDE Q +++ T +A
Sbjct: 500 -----HAEFNRSIRSRRLK-----SPKYDYSSPLAL--MQFYRIILDEVQMLRSSSTYSA 547
Query: 1102 KACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVL---NTKKP 1158
K + W +SGTPIQ NI ++ +L++ P+ E F + + N K
Sbjct: 548 KCTSLLHRIHTWGVSGTPIQ-NIYNFRMIMSYLKLHPFCDEVDFIRTLQEEIKLRNEAKD 606
Query: 1159 YDYND 1163
Y ND
Sbjct: 607 YTSND 611
Score = 69.7 bits (169), Expect = 4e-11
Identities = 63/270 (23%), Positives = 122/270 (44%), Gaps = 26/270 (9%)
Query: 1311 MTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLVC 1370
++C +C+ +++I +++ CGH C C ++ P KG S++
Sbjct: 1237 LSCSICLGEVEIGAII---KCGHYFCKSCILTWLRAHSKCPIC----KGFCSISEVYNFK 1289
Query: 1371 RKMNNDKEAISYQL-------FDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKS 1423
K + +K Q Q N+ SI E +K+ + + +
Sbjct: 1290 FKNSTEKREKEIQEPRREGADSSQDNSNENSIISNMSEVEKLFGNKYEQFHQINEVHQIH 1349
Query: 1424 LKES--KKVEMCLDIIK----KVTDSNTDE-KLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
+KES K++ + +I K N D +++++SQ T + +++G +K L +
Sbjct: 1350 IKESFGAKIDFVIKLISYLRLKSEQENADPPQVILYSQKTEYLKVIGKVLK----LYHIE 1405
Query: 1477 YDGSMSSSQR-SACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
+ +S++ I +F + + +L+++K +GL L A H+ L DP N E Q
Sbjct: 1406 HLACLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNLINAKHIFLLDPILNNSDELQ 1465
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIV 1565
AM R +RI Q+ E +V +I+ +VE+ I+
Sbjct: 1466 AMGRNNRIGQDEETFVWNFMIRNTVEENIL 1495
>At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1447
Score = 86.7 bits (213), Expect = 3e-16
Identities = 61/201 (30%), Positives = 103/201 (50%), Gaps = 21/201 (10%)
Query: 1420 DYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEIL-------------GHFI 1466
+YK S K+ + LDI+ D +K ++FSQ +++ G F
Sbjct: 1075 NYKVSDFSGKMILLLDILSMSAD--VGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFW 1132
Query: 1467 KKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVM--LISMKAGNSGLTLTCANHVILA 1524
KK G ++ R DG SS+R ++ F + +N RV LIS +AG+ G+ L AN VI+
Sbjct: 1133 KK--GKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIV 1190
Query: 1525 DPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQI 1584
D WNP + QA+ R R Q++ V+ +RL+ + ++E++I + Q K+ L +D Q+
Sbjct: 1191 DGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQV 1250
Query: 1585 REVNKLGRKELGFLFGLNSLD 1605
+ ++E+ LF + D
Sbjct: 1251 HRT--ISKEEMLHLFEFDDDD 1269
>Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1493
Score = 86.3 bits (212), Expect = 4e-16
Identities = 53/160 (33%), Positives = 88/160 (54%), Gaps = 5/160 (3%)
Query: 1447 EKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISM 1506
+++++FSQ +IL F++ +L+ DG+ + + R I + +D + V L++
Sbjct: 856 QRVLLFSQSRQMLDILEVFLRAQK-YTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTT 914
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+ G G+ LT AN V++ DP WNP + QA +R RI Q+++V V+RLL ++E++I
Sbjct: 915 RVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYH 974
Query: 1567 LQNKKKTLVNLAM-DPTQIREVNKLGRKELGFLFGLNSLD 1605
Q K+ L N + DP Q R +L LF L S D
Sbjct: 975 RQIFKQFLTNRVLKDPKQRRFFKS---NDLYELFTLTSPD 1011
Score = 78.2 bits (191), Expect = 1e-13
Identities = 100/421 (23%), Positives = 169/421 (39%), Gaps = 80/421 (19%)
Query: 869 YKTRIDHSLRMTNIYNTADASSLRDLLEGLKEIETEVEGEDLTPNELTVNLLKHQRQGLR 928
YK R LR N D L + +E + E + P L L K+Q+ G+R
Sbjct: 461 YKQR----LRRWNKLRLQDKEKRLKLEDDSEESDAEFDEGFKVPGFLFKKLFKYQQTGVR 516
Query: 929 WLVSMEKSSKRGGLLADDMGLGKTVQSLALLMA---NKPEPKSA------IKTTLVVAPV 979
WL + + GG+L D+MGLGKT+Q +A L +K + + + T++V P
Sbjct: 517 WLWELH-CQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPT 575
Query: 980 AVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKK 1039
V+ W E F +W V + ++T + KK
Sbjct: 576 TVMHQWVKE-------------------------FHTWWPPFR---VAILHETGSYTHKK 607
Query: 1040 HWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQ 1099
K H + + + ++ + S + +++ VILDE I+N
Sbjct: 608 E-----KLIRDVAHCHGILITSYSYIRLMQDDISRY-----DWHYVILDEGHKIRNPNAA 657
Query: 1100 AAKACCTISSTFRWALSGTPIQNNIGELYSLIRFL------RIPPYNKEAKFHSDIGAVL 1153
AC + R LSG+P+QNN+ EL+SL F+ +P + ++ +G
Sbjct: 658 VTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYS 717
Query: 1154 NTKKPYDYNDSERQRAMKKVQVL---LRAIMLRRTKTSQIDGKPILQLPEKHLKESANKL 1210
N + + + A K VL + +LRR K+ D K L LP+K+ + +L
Sbjct: 718 NA------SPVQVKTAYKCACVLRDTINPYLLRRMKS---DVKMSLSLPDKNEQVLFCRL 768
Query: 1211 EGDELEFYQ-ALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGESNA 1269
++ + YQ ++SK + ++L + + I + C H +L G N
Sbjct: 769 TDEQHKVYQNFVDSK---EVYRILNGEMQ------IFSGLIALRKICNHPDLFSGGPKNL 819
Query: 1270 K 1270
K
Sbjct: 820 K 820
>CE17716 [R] KOG0383 Predicted helicase
Length = 1829
Score = 86.3 bits (212), Expect = 4e-16
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 16/195 (8%)
Query: 1414 KNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLN 1473
KNG +K S K + +++K+ D +++IFSQ T +I+ + G
Sbjct: 912 KNGMYEGTALIKNSGKFVLLQKMLRKLKDGG--HRVLIFSQMTRMLDIMEDLCEYE-GYR 968
Query: 1474 FLRYDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVILADPFWNPFV 1532
+ R DGS+ R I+ + + + L+S +AG G+ L A+ VI+ D WNP
Sbjct: 969 YERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1028
Query: 1533 EEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNL------------AMD 1580
+ QA R HR+ Q+ +V ++R + K SVE++I + KK L +L M
Sbjct: 1029 DIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRAGLGGKEGKTMS 1088
Query: 1581 PTQIREVNKLGRKEL 1595
T++ +V + G +EL
Sbjct: 1089 KTELDDVLRWGTEEL 1103
Score = 67.8 bits (164), Expect = 1e-10
Identities = 72/282 (25%), Positives = 119/282 (41%), Gaps = 52/282 (18%)
Query: 922 HQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAV 981
+Q +GL WL S+ +LAD+MGLGKTVQSL L + E L+ AP++
Sbjct: 605 YQLEGLNWLRHCW-SNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCK-GPFLIAAPLST 662
Query: 982 LRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTL--ASEFKK 1039
+ W+ E W D +V+Y L A +
Sbjct: 663 IINWEREA-------------------------EQWCP----DFYVVTYVGLRDARVVLR 693
Query: 1040 HWPLSWKNGEHQPDVHAVDLKLMNQVK-----SSDEYFS--PFYRNDSEFYRVILDEAQN 1092
S+ G + A +K +K +S E + + E+ +++DEA
Sbjct: 694 EHEFSFVEGAVRSGPKASKMKTTENMKFHVLLTSYETINMDKTILSSIEWGALVVDEAHR 753
Query: 1093 IKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAV 1152
+KN ++ K + +R L+GTP+QNN+ EL+ L+ FL +N+ F +
Sbjct: 754 LKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTA----- 808
Query: 1153 LNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKP 1194
++N+ ++ ++K+ LL MLRR K + G P
Sbjct: 809 -------EFNEISKEDQIEKLHNLLGPHMLRRLKADVLTGMP 843
>7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 844
Score = 86.3 bits (212), Expect = 4e-16
Identities = 44/127 (34%), Positives = 78/127 (60%), Gaps = 1/127 (0%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMK 1507
++++FSQFTM +I+ +++ F R DG+ + + R I F D++ V L+S K
Sbjct: 670 RVLLFSQFTMMLDIVEEYLRIRK-FGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTK 728
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
AG G+ LT A+ ++ D +NP+ ++QA DRCHR+ Q+R V ++RL+ + ++E+ I+
Sbjct: 729 AGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMA 788
Query: 1568 QNKKKTL 1574
+K L
Sbjct: 789 AEEKLKL 795
Score = 77.4 bits (189), Expect = 2e-13
Identities = 95/358 (26%), Positives = 155/358 (42%), Gaps = 54/358 (15%)
Query: 873 IDHSLRMTNIYNTADA--SSLRDLLEGLKEIETEVEGEDLTPNELT--VNLLKHQRQGLR 928
++++ + N NT A S +++ L++ + G P L+ + L +Q GL
Sbjct: 239 LNYAQELINKQNTVAAILSKCNNMVSRLEKAISNGAGIVEQPKLLSSGLQLADYQIIGLN 298
Query: 929 WLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDE 988
WL M K + G+LAD+MGLGKT+Q +A L K S L+V P + L W+ E
Sbjct: 299 WLTVMHKQ-EMNGILADEMGLGKTIQVIAFLAYLKENGLSQA-AHLIVVPSSTLDNWEAE 356
Query: 989 XXXXXXXXXXXXXXIFGGGENNSSKFRSW--KD-LAEYDIVLVSYQTLASEFKKHWPLSW 1045
+ G ++ + R KD +D++L +Y + S ++
Sbjct: 357 ISRWCPELVVEK---YHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTPEE------ 407
Query: 1046 KNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACC 1105
+ M +V D VI DEA +KN TQ
Sbjct: 408 --------------RKMFRVCKLDY--------------VIFDEAHMLKNMTTQRYANLI 439
Query: 1106 TISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSE 1165
TI++ R L+GTP+QNN+ EL SL+ F+ +P + AK DI ++ K D + E
Sbjct: 440 TINARMRILLTGTPLQNNLLELISLLCFV-MPKF--FAKSIEDIKSLFAKKGKSDGDQDE 496
Query: 1166 ----RQRAMKKVQVLLRAIMLRRTKTSQIDGKP-ILQLPEKHLKESANKLEGDELEFY 1218
++ +++ + +++ +LRR K + P L L EK S K+ EL Y
Sbjct: 497 VSQFQETQIQRAKRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDY 554
>SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 104
Score = 85.9 bits (211), Expect = 5e-16
Identities = 37/76 (48%), Positives = 58/76 (75%)
Query: 1496 DNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLL 1555
D + V++IS+KAG GL LTCANHV + DP+W+ VE QA+DR HR+ QE+ V+V R +
Sbjct: 1 DPDVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYI 60
Query: 1556 IKMSVEDRIVELQNKK 1571
++ +VE+R++++Q +K
Sbjct: 61 VRDTVEERMLKIQERK 76
>ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1251
Score = 85.9 bits (211), Expect = 5e-16
Identities = 98/366 (26%), Positives = 161/366 (43%), Gaps = 62/366 (16%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALL--MANKPEPKSAIKTTLVV 976
L ++Q +GL WL++ K+ ++AD+MGLGKTVQS+ + + K + + + LVV
Sbjct: 302 LREYQLEGLNWLLN-RWYYKQSCIMADEMGLGKTVQSVTFINTLFTKYDYCAPV---LVV 357
Query: 977 APVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASE 1036
P++++ W+ E + EN + +AEY+ VL
Sbjct: 358 TPLSIIPHWEREFEAWTDLR------VLKYHENRPGRAL----IAEYEFVL--------- 398
Query: 1037 FKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNK 1096
K + + V + + V + E+ S F+ F I DEA +KN
Sbjct: 399 ---------KKNNLEIRLFDVLITTYDTVMAEQEHLSQFH-----FSVGIFDEAHRLKNA 444
Query: 1097 KTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTK 1156
K++AA T+ + LSGTP+QNNI EL+SL+ F+ + S + L
Sbjct: 445 KSKAATILRTLKFNHKVLLSGTPLQNNISELWSLLNFI-------DPMRFSSLPHFLGEF 497
Query: 1157 KPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELE 1216
K + ND E K+Q LLR +MLRR K D + + E+ + E A L +
Sbjct: 498 KMENINDVE------KLQGLLRPLMLRRMKE---DVEKSIPTKEETIIEVA--LTMIQKR 546
Query: 1217 FYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGESNAKSSKIIN 1276
FY+A+ K+ + L K+ A ++ + C+H L+K E S +
Sbjct: 547 FYRAILEKNIE----FLTKGGKESA-PNLLNVMMELRKCCIHPYLIKGAEEQILSGYLKK 601
Query: 1277 GKDFEK 1282
++ K
Sbjct: 602 KRERSK 607
Score = 75.5 bits (184), Expect = 6e-13
Identities = 47/139 (33%), Positives = 77/139 (54%), Gaps = 5/139 (3%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
++ S K+ + ++ K+ D + K++IFSQ T ++L ++ + R DG +
Sbjct: 645 IQSSGKLVLLDKLLGKLKDGH---KVLIFSQMTRCLDLLAEYLAYRK-YKYERIDGGART 700
Query: 1484 SQRSACIESFY-QDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
R A I+ F + ++ V L+S +AG G+ LT A+ VI+ D WNP + QA RCHR
Sbjct: 701 ENRQAAIDRFSDKTSDVFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDLQAQARCHR 760
Query: 1543 ISQEREVYVHRLLIKMSVE 1561
I Q EV V+RL+ + + E
Sbjct: 761 IGQTSEVKVYRLVTENTYE 779
>At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1132
Score = 85.5 bits (210), Expect = 6e-16
Identities = 85/319 (26%), Positives = 137/319 (42%), Gaps = 50/319 (15%)
Query: 874 DHSLRMTNIYNTADASSLRDLLEGLKEIETEVEG--EDLTPNELTVN---LLKHQRQGLR 928
D + +T N D++ DLLEG ++ + + E +T + L +Q +GL+
Sbjct: 386 DQDIDITESDNNDDSN---DLLEGQRQYNSAIHSIQEKVTEQPSLLEGGELRSYQLEGLQ 442
Query: 929 WLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDE 988
W+VS+ ++ G +LAD+MGLGKT+Q+++L+ A E K L+VAP AVL W +E
Sbjct: 443 WMVSLFNNNLNG-ILADEMGLGKTIQTISLI-AYLLENKGVPGPYLIVAPKAVLPNWVNE 500
Query: 989 XXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNG 1048
F +W I Y E K G
Sbjct: 501 -------------------------FATWVP----SIAAFLYDGRLEERKAIREKIAGEG 531
Query: 1049 EHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCT-I 1107
+ + DL + ++ + E+Y +I+DE +KN ++ AK T
Sbjct: 532 KFNVLITHYDLIMRDKA----------FLKKIEWYYMIVDEGHRLKNHESALAKTLLTGY 581
Query: 1108 SSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQ 1167
R L+GTPIQN++ EL+SL+ FL +N F A + D E
Sbjct: 582 RIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEEL 641
Query: 1168 RAMKKVQVLLRAIMLRRTK 1186
+ ++ ++R +LRR K
Sbjct: 642 LIIHRLHHVIRPFILRRKK 660
Score = 85.1 bits (209), Expect = 8e-16
Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
++ S K E+ ++ K+ + ++++FSQ T ++L ++ N +LR DG+ +
Sbjct: 739 VRASGKFELLDRLLPKLRKAG--HRILLFSQMTRLIDVLEIYLTLN-DYKYLRLDGTTKT 795
Query: 1484 SQRSACIESFYQ-DNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
QR ++ F + D+ Y + L+S +AG GL L A+ VI+ D WNP +++QA DR HR
Sbjct: 796 DQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHR 855
Query: 1543 ISQEREVYVHRLLIKMSVEDRIVELQNKK 1571
I Q++EV V L+ SVE+ I+E +K
Sbjct: 856 IGQKKEVRVFVLVSVGSVEEVILERAKQK 884
>YBR073w [L] KOG0390 DNA repair protein SNF2 family
Length = 958
Score = 85.1 bits (209), Expect = 8e-16
Identities = 50/177 (28%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 1410 KARLKNGYTID-YKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKK 1468
K+ +K+ + D Y S K+++ + +++ + T EK+V+ S +T +I+ + +
Sbjct: 645 KSHIKDTQSQDSYSRSLNSGKLKVLMTLLEGIR-KGTKEKVVVVSNYTQTLDIIENLMNM 703
Query: 1469 NLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFW 1528
G++ R DGS+ + QR + + SF ++ L+S K+G GL L + +IL D W
Sbjct: 704 -AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDW 762
Query: 1529 NPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIR 1585
NP V+ QAM R HR Q++ +++RL+ ++++I++ Q K +L + +++R
Sbjct: 763 NPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMR 819
>At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1053
Score = 85.1 bits (209), Expect = 8e-16
Identities = 45/131 (34%), Positives = 75/131 (56%), Gaps = 2/131 (1%)
Query: 1471 GLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNP 1530
G +FLR DG+ + R +E F + + + L++ + G GLTLT A+ VI+ DP WNP
Sbjct: 735 GYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNP 794
Query: 1531 FVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKL 1590
+ Q++DR +RI Q ++V V+RL+ +VE++I Q K L A + + ++
Sbjct: 795 STDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKE--QIRYF 852
Query: 1591 GRKELGFLFGL 1601
+++L LF L
Sbjct: 853 SQQDLRELFSL 863
Score = 82.8 bits (203), Expect = 4e-15
Identities = 65/216 (30%), Positives = 92/216 (42%), Gaps = 31/216 (14%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P ++ L HQR+GL WL S+ K GG+L DDMGLGKT+Q + L IK
Sbjct: 370 PGKIATMLYPHQREGLNWLWSLHTQGK-GGILGDDMGLGKTMQICSFLAG--LFHSKLIK 426
Query: 972 TTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQ 1031
LVVAP +L W E + G + ++ L I+L +Y
Sbjct: 427 RALVVAPKTLLPHWMKELATVGLSQMTRE---YYGTSTKAREYDLHHILQGKGILLTTYD 483
Query: 1032 TLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQ 1091
+ + K ++ D Y + +++ +ILDE
Sbjct: 484 IVRNNTK-------------------------ALQGDDHYTDEDDEDGNKWDYMILDEGH 518
Query: 1092 NIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGEL 1127
IKN TQ AK+ I S+ R +SGTPIQNN+ L
Sbjct: 519 LIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKAL 554
>CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1336
Score = 84.7 bits (208), Expect = 1e-15
Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 1427 SKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQR 1486
S K+E+ I+ K+ T ++++F Q T I+ F+ + +LR DGS +R
Sbjct: 682 SGKLELLSRILPKL--QATGHRVLMFFQMTSMMTIVEDFLAGGT-IQYLRLDGSTKPDER 738
Query: 1487 SACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQ 1545
A ++ F N+ Y + ++S +AG GL L A+ VI+ D WNP + QA DR HRI Q
Sbjct: 739 GALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQ 798
Query: 1546 EREVYVHRLLIKMSVEDRIV 1565
+ EV V RL+ SVE++I+
Sbjct: 799 KAEVRVFRLITANSVEEKIL 818
>SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1373
Score = 84.3 bits (207), Expect = 1e-15
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQ-DNNYRVMLISM 1506
+++IFSQ ILG ++ G N+ R DG++ +S R I+ F D+ V L+S
Sbjct: 722 RVLIFSQMVRMLNILGEYMSLR-GYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLST 780
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+AG G+ L A+ VI+ D WNP + QAM R HRI Q+ V V+R L K +VE+ I+E
Sbjct: 781 RAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILE 840
Query: 1567 LQNKKKTLVNLAMDPTQIREVNKLGRKE 1594
+ ++K ++ A+ + E +K + +
Sbjct: 841 -RARRKMILEYAIISLGVTEKSKNSKND 867
>At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1041
Score = 84.3 bits (207), Expect = 1e-15
Identities = 50/149 (33%), Positives = 87/149 (57%), Gaps = 4/149 (2%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
++ S K E+ ++ K+ + ++++FSQ T ++L ++ N +LR DGS +
Sbjct: 668 VRASGKFELLDRLLPKLKKAG--HRILLFSQMTRLIDLLEIYLSLN-DYMYLRLDGSTKT 724
Query: 1484 SQRSACIESFYQ-DNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
QR ++ F + D+ Y + L+S +AG GL L A+ +I+ D WNP +++QA DR HR
Sbjct: 725 DQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHR 784
Query: 1543 ISQEREVYVHRLLIKMSVEDRIVELQNKK 1571
I Q++EV V L+ S+E+ I+E +K
Sbjct: 785 IGQKKEVRVFVLVSIGSIEEVILERAKQK 813
Score = 79.3 bits (194), Expect = 4e-14
Identities = 73/301 (24%), Positives = 126/301 (41%), Gaps = 48/301 (15%)
Query: 893 DLLEGLKEIETEVEG--EDLTPNELTVN---LLKHQRQGLRWLVSMEKSSKRGGLLADDM 947
DLLEG ++ + E +T + L +Q +GL+W+VS+ + G +LAD+M
Sbjct: 332 DLLEGERQFNLAIHSIQEKVTKQPSLLQGGELRSYQLEGLQWMVSLYNNDYNG-ILADEM 390
Query: 948 GLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGG 1007
GLGKT+Q++AL+ A E K L++AP AVL W++E ++ G
Sbjct: 391 GLGKTIQTIALI-AYLLESKDLHGPHLILAPKAVLPNWENE---FALWAPSISAFLYDGS 446
Query: 1008 ENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKS 1067
+ ++ R+ ++++++ Y + + + W
Sbjct: 447 KEKRTEIRARIAGGKFNVLITHYDLIMRDKAFLKKIDWN--------------------- 485
Query: 1068 SDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCT-ISSTFRWALSGTPIQNNIGE 1126
+I+DE +KN + AK T R L+GTPIQN++ E
Sbjct: 486 ----------------YMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQE 529
Query: 1127 LYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTK 1186
L+SL+ FL +N F D E + ++ ++R +LRR K
Sbjct: 530 LWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKK 589
Query: 1187 T 1187
+
Sbjct: 590 S 590
>YGL163c [L] KOG0390 DNA repair protein SNF2 family
Length = 898
Score = 83.6 bits (205), Expect = 2e-15
Identities = 53/186 (28%), Positives = 99/186 (52%), Gaps = 11/186 (5%)
Query: 1396 DDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQF 1455
DDL L D + KAR D ++ K S K + + K+ + +D+K+V+ S +
Sbjct: 631 DDLELPDDYNMPGSKAR-------DVQT-KYSAKFSILERFLHKIK-TESDDKIVLISNY 681
Query: 1456 TMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLT 1514
T +++ + + +R DG+MS ++R ++ F + L+S KAG G+
Sbjct: 682 TQTLDLIEKMCRYK-HYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGIN 740
Query: 1515 LTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTL 1574
L AN +IL DP WNP ++QA+ R R Q+++ +++R + ++E++I + Q+ K +L
Sbjct: 741 LIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSL 800
Query: 1575 VNLAMD 1580
+ +D
Sbjct: 801 SSCVVD 806
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 83.2 bits (204), Expect = 3e-15
Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 58/321 (18%)
Query: 909 DLTPNELTVNLLK-HQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPK 967
D P+ L LK +Q +GL W+VS+ ++ G+LAD+MGLGKT+QS++L+ E K
Sbjct: 459 DKQPSILVGGTLKEYQLRGLEWMVSLY-NNHLNGILADEMGLGKTIQSISLI-TYLYEVK 516
Query: 968 SAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVL 1027
I LV+ P++ + W E I+ G N + + +D++L
Sbjct: 517 KDIGPFLVIVPLSTITNWTLE---FEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLL 573
Query: 1028 VSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVIL 1087
+Y+ + D L+++ ++ +I+
Sbjct: 574 TTYEYIIK----------------------DKSLLSK---------------HDWAHMII 596
Query: 1088 DEAQNIKNKKTQAAKACCTISSTF----RWALSGTPIQNNIGELYSLIRFLRIPPYNKEA 1143
DE +KN + +K TIS + R L+GTP+QNN+ EL++L+ F+ +N
Sbjct: 597 DEGHRMKNAQ---SKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAK 653
Query: 1144 KFHSDIG---AVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPE 1200
F A T++ + + E ++++ +LR +LRR K +++ LP+
Sbjct: 654 TFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLK-KEVE----KDLPD 708
Query: 1201 KHLKESANKLEGDELEFYQAL 1221
K K KL G + + YQ +
Sbjct: 709 KVEKVIKCKLSGLQQQLYQQM 729
Score = 82.4 bits (202), Expect = 5e-15
Identities = 46/125 (36%), Positives = 74/125 (58%), Gaps = 2/125 (1%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQ-DNNYRVMLISM 1506
++++F Q T +I+ F++ L ++R DGS + +R+ + +F D++Y L+S
Sbjct: 809 RVLMFFQMTQVMDIMEDFLRMK-DLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLST 867
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+AG GL L A+ VI+ D WNP + QA DR HRI Q+ EV + RL+ SVE+ I+E
Sbjct: 868 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILE 927
Query: 1567 LQNKK 1571
+K
Sbjct: 928 RAMQK 932
>ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 823
Score = 82.8 bits (203), Expect = 4e-15
Identities = 81/311 (26%), Positives = 140/311 (44%), Gaps = 57/311 (18%)
Query: 911 TPNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAI 970
+P + L +Q +GL WL++M ++S +LAD+MGLGKT+Q++A L + K
Sbjct: 45 SPRFVLYELRDYQIEGLNWLINMHENSINC-ILADEMGLGKTLQTIAFLGYIRYVKKER- 102
Query: 971 KTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSY 1030
K L++ P + L W+ E FR + + + S
Sbjct: 103 KRHLIILPKSTLANWRRE-------------------------FRKFMPNYKVRVFYSSR 137
Query: 1031 QTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEA 1090
+ + E ++ W ++ ++N VK S +++DEA
Sbjct: 138 KEMRREAEEIMSSRWDACLTTYEMCINARSILNTVKWS---------------YIVIDEA 182
Query: 1091 QNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIG 1150
IKN+ + +K S R ++GTP+QNN+ EL++L+ F+ +N KF S
Sbjct: 183 HRIKNEHSLLSKIVRIFSCDHRLLITGTPLQNNVHELWALLNFIVPEIFNDAEKFES--- 239
Query: 1151 AVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKL 1210
V+N D D E A+++++ +L+ LRR K ID + + LP K + +KL
Sbjct: 240 YVMN----IDEGDGE---AIRRIRSVLQLFFLRREK---IDVE--MSLPPKKIVNLYSKL 287
Query: 1211 EGDELEFYQAL 1221
+ E+Y+ L
Sbjct: 288 SPMQREWYRML 298
Score = 81.6 bits (200), Expect = 9e-15
Identities = 52/164 (31%), Positives = 92/164 (55%), Gaps = 4/164 (2%)
Query: 1417 YTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
YT D ++ S K+ + ++ + + +++IFSQ +M +IL + + R
Sbjct: 341 YTNDKHIIENSGKMIVLDKLLASLKAKGS--RVLIFSQMSMMLDILEDYAMFR-EYEYCR 397
Query: 1477 YDGSMSSSQRSACIESFYQDNNYRVM-LISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
DGS S R+ I+ F + + + + L++ +AG G+ L+ A+ VIL D WNP ++ Q
Sbjct: 398 IDGSTSYRDRTEAIDGFNAEGSEKFLFLLTTRAGGLGINLSTADTVILFDSDWNPQMDLQ 457
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAM 1579
A DR HRI Q+++V V RL+ + +VE+RIV +K L ++ +
Sbjct: 458 AQDRAHRIGQKKQVVVFRLISENTVEERIVYRSLQKLKLDDILL 501
>7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1883
Score = 82.8 bits (203), Expect = 4e-15
Identities = 55/172 (31%), Positives = 92/172 (52%), Gaps = 7/172 (4%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
LK S K+ + ++ ++ + T +++IFSQ ++L +++K F R DGS+
Sbjct: 832 LKGSGKLVLLDKLLCRLKE--TGHRVLIFSQMVRMLDVLADYLQKR-HFPFQRLDGSIKG 888
Query: 1484 SQRSACIESFYQDNNYRV-MLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
R ++ F + + L+S +AG G+ L A+ VI+ D WNP + QA R HR
Sbjct: 889 EMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHR 948
Query: 1543 ISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLA---MDPTQIREVNKLG 1591
I Q+ +V ++RL+ SVE++IVE +K L +L MD T ++K G
Sbjct: 949 IGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSG 1000
>CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1465
Score = 82.4 bits (202), Expect = 5e-15
Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 11/183 (6%)
Query: 1398 LRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTM 1457
L +YD + + + RL+ + LK S K+ + ++ ++ D +++IFSQ M
Sbjct: 688 LTRQYDHIYDDAQGRLQ-------QLLKSSGKLILLDKLLCRLKDKG--HRVLIFSQMVM 738
Query: 1458 FFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLTLT 1516
+IL +++ R DGSM + R ++ + + L+S +AG G+ L
Sbjct: 739 MLDILQEYLQLRR-FPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLA 797
Query: 1517 CANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVN 1576
A+ VI+ D WNP + QAM R HRI Q + V ++RL+ K SVE+ IVE +K L +
Sbjct: 798 TADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDH 857
Query: 1577 LAM 1579
L +
Sbjct: 858 LVI 860
>SPBP35G2.10 [R] KOG0383 Predicted helicase
Length = 1418
Score = 82.0 bits (201), Expect = 7e-15
Identities = 54/168 (32%), Positives = 97/168 (57%), Gaps = 9/168 (5%)
Query: 1417 YTIDYKSLKESKKVEMCLDII--KKVTDSNTDEKLVIFSQFTMFFEILGHFIK-KNLGLN 1473
Y + +SL+E+ + L ++ K +T + ++++FSQF +IL + + KN+
Sbjct: 859 YELAMRSLEEASCKFLILRLLVPKLITRGH---RILLFSQFIQQLDILEDWFEYKNIA-- 913
Query: 1474 FLRYDGSMSSSQRSACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFV 1532
+ R+DG+ S +R + I+SF N+ L+S +AG G+ L A+ VI+ DP +NP
Sbjct: 914 YARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLASADTVIILDPDFNPHQ 973
Query: 1533 EEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMD 1580
+ QA+ R HR Q+++V V L + SVE++I++ KK L +L ++
Sbjct: 974 DMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDHLIVE 1021
Score = 71.6 bits (174), Expect = 9e-12
Identities = 69/276 (25%), Positives = 119/276 (43%), Gaps = 50/276 (18%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAP 978
L+ +Q +GL WL + + +LAD+MGLGKTVQ ++ + K LV+ P
Sbjct: 556 LMPYQLKGLNWLY-LRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKCF--PVLVIVP 612
Query: 979 VAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFK 1038
A + W+ E + G E N S R ++ + + D VS L
Sbjct: 613 HATVANWERELKKWAPFLQIN---VLVGSEKNRSLVRDYRLINQKDPKHVSTHVLV---- 665
Query: 1039 KHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKT 1098
+S N E + + L+ + ++ +I+DE Q +KN ++
Sbjct: 666 ----ISASNVERE-------ISLLRKF---------------QWKVLIVDEGQRLKNDQS 699
Query: 1099 QAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKP 1158
++ S F+ L+GTP+QNN+ EL++L++FL N +K
Sbjct: 700 SLFYYLSSVKSDFKLLLTGTPLQNNVRELFNLLQFLNPMKIN-----------AAELEKR 748
Query: 1159 YDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKP 1194
Y D+E+ + ++ +L+ LRR K+ +D P
Sbjct: 749 YSIIDTEK---VTELHQILKPFFLRRVKSEVLDNFP 781
>Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1669
Score = 82.0 bits (201), Expect = 7e-15
Identities = 64/253 (25%), Positives = 109/253 (42%), Gaps = 74/253 (29%)
Query: 1313 CPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLVCRK 1372
CP+C Q+ + +CGHC C +C ++ + G++ +I C +CR+
Sbjct: 1473 CPICARQLG--KQWAVLTCGHCFCNECISIIIEQYSV---------GSHRSSIKCAICRQ 1521
Query: 1373 MNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKKVEM 1432
+ KE ISY + +KA + + ++ +
Sbjct: 1522 TTSHKE-ISY----------------------VFTSEKANQEEDIPVKWQDV-------- 1550
Query: 1433 CLDIIKK-VTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIE 1491
LDII K +TD+N + F+Q + ++NL
Sbjct: 1551 -LDIISKALTDNNME-----FAQISRV-----KTFQENLS-------------------- 1579
Query: 1492 SFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYV 1551
+F +D ++L+ + G++GLT+ A HV+L +P NP E QA+ R HRI Q + V
Sbjct: 1580 AFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIV 1639
Query: 1552 HRLLIKMSVEDRI 1564
HR LIK ++E+R+
Sbjct: 1640 HRFLIKATIEERM 1652
Score = 68.6 bits (166), Expect = 8e-11
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 965 EPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYD 1024
EP S + TL+++P ++ W DE G ++ F LAE D
Sbjct: 748 EPVST-RATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDG---FLQPHFLAEQD 803
Query: 1025 IVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYR 1084
IV+++Y L SE N P ++ D + + K SP E++R
Sbjct: 804 IVIITYDVLRSEL---------NYVDIPHSNSEDGRRLRNQKRYMAIPSPLVA--VEWWR 852
Query: 1085 VILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPY 1139
+ LDEAQ ++ +AA+ +S RW +SGTP+Q + +L+ L+ FL I PY
Sbjct: 853 ICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPY 907
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 82.0 bits (201), Expect = 7e-15
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 1425 KESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSS 1484
+ S K E+ I+ K+ +N K+++F Q T I+ + G +LR DG+ +
Sbjct: 1077 RASGKFELLDRILPKLRATN--HKVLLFCQMTSLMTIMEDYFAYR-GFKYLRLDGTTKAE 1133
Query: 1485 QRSACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRI 1543
R +++F + + Y + L+S +AG GL L A+ VI+ D WNP + QA DR HRI
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193
Query: 1544 SQEREVYVHRLLIKMSVEDRIV 1565
Q+ EV V RL SVE++I+
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKIL 1215
>Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2492
Score = 82.0 bits (201), Expect = 7e-15
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 1420 DYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIK------------ 1467
D + L+ S K+ + +I++ + +K+++FSQ + +++ F++
Sbjct: 2010 DAEVLEHSGKMVLLFEILRMAEEIG--DKVLVFSQSLISLDLIEDFLELASREKTEDKDK 2067
Query: 1468 ----KNLG-----LNFLRYDGSMSSSQRSACIESFYQDNNYR--VMLISMKAGNSGLTLT 1516
K G +++ R DGS ++ R E F + N R + +IS KAG+ G+ L
Sbjct: 2068 PLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLV 2127
Query: 1517 CANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVN 1576
AN VI+ D WNP + Q++ R +R Q + VYV+R L + ++ED+I + Q K++L
Sbjct: 2128 AANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSF 2187
Query: 1577 LAMDPTQI 1584
+D Q+
Sbjct: 2188 RVVDQQQV 2195
>Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2288
Score = 82.0 bits (201), Expect = 7e-15
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 1420 DYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIK------------ 1467
D + L+ S K+ + +I++ + +K+++FSQ + +++ F++
Sbjct: 1806 DAEVLEHSGKMVLLFEILRMAEEIG--DKVLVFSQSLISLDLIEDFLELASREKTEDKDK 1863
Query: 1468 ----KNLG-----LNFLRYDGSMSSSQRSACIESFYQDNNYR--VMLISMKAGNSGLTLT 1516
K G +++ R DGS ++ R E F + N R + +IS KAG+ G+ L
Sbjct: 1864 PLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLV 1923
Query: 1517 CANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVN 1576
AN VI+ D WNP + Q++ R +R Q + VYV+R L + ++ED+I + Q K++L
Sbjct: 1924 AANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSF 1983
Query: 1577 LAMDPTQI 1584
+D Q+
Sbjct: 1984 RVVDQQQV 1991
>Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2454
Score = 82.0 bits (201), Expect = 7e-15
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 1420 DYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIK------------ 1467
D + L+ S K+ + +I++ + +K+++FSQ + +++ F++
Sbjct: 1972 DAEVLEHSGKMVLLFEILRMAEEIG--DKVLVFSQSLISLDLIEDFLELASREKTEDKDK 2029
Query: 1468 ----KNLG-----LNFLRYDGSMSSSQRSACIESFYQDNNYR--VMLISMKAGNSGLTLT 1516
K G +++ R DGS ++ R E F + N R + +IS KAG+ G+ L
Sbjct: 2030 PLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLV 2089
Query: 1517 CANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVN 1576
AN VI+ D WNP + Q++ R +R Q + VYV+R L + ++ED+I + Q K++L
Sbjct: 2090 AANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSF 2149
Query: 1577 LAMDPTQI 1584
+D Q+
Sbjct: 2150 RVVDQQQV 2157
>At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1245
Score = 82.0 bits (201), Expect = 7e-15
Identities = 74/288 (25%), Positives = 126/288 (43%), Gaps = 50/288 (17%)
Query: 912 PNELTVNLLK-HQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAI 970
P+ L L+ +Q GL+W++S+ ++K G+LAD+MGLGKTVQ +AL+ A E K
Sbjct: 26 PSMLQAGTLRDYQLVGLQWMLSLY-NNKLNGILADEMGLGKTVQVMALI-AYLMEFKGNY 83
Query: 971 KTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSY 1030
L++ P AVL WK E + G ++ SK S ++++++ +Y
Sbjct: 84 GPHLIIVPNAVLVNWKSE---LHTWLPSVSCIYYVGTKDQRSKLFSQVKFEKFNVLVTTY 140
Query: 1031 QTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEA 1090
+ + + K + WK +I+DEA
Sbjct: 141 EFIMYDRSKLSKVDWK-------------------------------------YIIIDEA 163
Query: 1091 QNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIG 1150
Q +K++++ A+ R L+GTP+QN++ EL+SL+ L ++ FH
Sbjct: 164 QRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFA 223
Query: 1151 AVLNTKKPYDYNDSERQRAMKKVQV------LLRAIMLRRTKTSQIDG 1192
+ P + + KKV V +L MLRR + ++G
Sbjct: 224 QPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRR-RVEDVEG 270
Score = 67.0 bits (162), Expect = 2e-10
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 5/129 (3%)
Query: 1445 TDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQ-DNNYRVML 1503
T ++++FS T +IL +++ L + R DG+ S R + I F D + + L
Sbjct: 375 TGHRVLLFSTMTKLLDILEEYLQWRR-LVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFL 433
Query: 1504 ISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREV---YVHRLLIKMSV 1560
+S++A GL L A+ V++ DP NP EEQA+ R HRI Q REV Y+ ++ K+S
Sbjct: 434 LSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSS 493
Query: 1561 EDRIVELQN 1569
+ EL++
Sbjct: 494 HQKEDELRS 502
>At2g25170 [R] KOG0383 Predicted helicase
Length = 1359
Score = 82.0 bits (201), Expect = 7e-15
Identities = 54/216 (25%), Positives = 113/216 (52%), Gaps = 10/216 (4%)
Query: 1381 SYQLFDQVNNLNYSIDDLRLEYDKM-----VAEQKARLKNGYTIDYKSLKES-KKVEMCL 1434
+YQ+ + S++++ +E K+ + E + + +K L ES K+++
Sbjct: 542 NYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLLD 601
Query: 1435 DIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFY 1494
++ K+ + +++I++QF ++L + + R DG + ++R I+ F
Sbjct: 602 KMMVKLKEQG--HRVLIYTQFQHMLDLLEDYCTHKKW-QYERIDGKVGGAERQIRIDRFN 658
Query: 1495 QDNNYRV-MLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHR 1553
N+ + L+S +AG G+ L A+ VI+ D WNP + QAM R HR+ Q +V ++R
Sbjct: 659 AKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYR 718
Query: 1554 LLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNK 1589
L+ + ++E+R+++L KK L +L + + + +N+
Sbjct: 719 LINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQ 754
Score = 75.5 bits (184), Expect = 6e-13
Identities = 81/342 (23%), Positives = 147/342 (42%), Gaps = 43/342 (12%)
Query: 922 HQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAPVAV 981
+Q +GL +L S + +LAD+MGLGKT+QS+ALL + E + LV+AP++
Sbjct: 276 YQLEGLNFL-RFSWSKQTHVILADEMGLGKTIQSIALLASLFEEN---LIPHLVIAPLST 331
Query: 982 LRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHW 1041
LR W+ E FG + + + E++ L Q + KK
Sbjct: 332 LRNWEREFATWAPQMNVVMY--FGTAQARAV-------IREHEFYLSKDQKKIKK-KKSG 381
Query: 1042 PLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAA 1101
+S ++ + + + L + P ++ +I+DE +KNK ++
Sbjct: 382 QISSESKQKRIKFDVL-LTSYEMINLDSAVLKPI-----KWECMIVDEGHRLKNKDSKLF 435
Query: 1102 KACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDY 1161
+ SS R L+GTP+QNN+ EL+ L+ FL + +F ++
Sbjct: 436 SSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE------------EF 483
Query: 1162 NDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQAL 1221
D ++ + ++ +L +LRR K + P P+K L + L + E+Y+A+
Sbjct: 484 KDINQEEQISRLHKMLAPHLLRRVKKDVMKDMP----PKKELILRVD-LSSLQKEYYKAI 538
Query: 1222 ESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVK 1263
+++ K K GA S+ + C H +++
Sbjct: 539 FTRNYQVLTK------KGGAQISLNNIMMELRKVCCHPYMLE 574
>7295362 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1270
Score = 82.0 bits (201), Expect = 7e-15
Identities = 63/263 (23%), Positives = 110/263 (40%), Gaps = 64/263 (24%)
Query: 1310 DMTCPVCMEQMDIDSMLVLNSCGHCLCAQCFEPYVDNAKLEPTASFGPKGTNSVNIPCLV 1369
D CP+C Q D+ ++++ CGH +C C + S K + C +
Sbjct: 1034 DKPCPICQTQDDVRYVMMV--CGHFVCQHCLD------------SMRRKNGRAGVTKCPL 1079
Query: 1370 CRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKSLKESKK 1429
CR+ D +L Y K+ + + T K
Sbjct: 1080 CRQ-----------------------DSPQLYYSVRPGAHKSIIGDFST----------K 1106
Query: 1430 VEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSAC 1489
+ ++++ K+ N EK+++FSQ+ + + I + L LN +++ R+ C
Sbjct: 1107 ISSVVELVLKIKGENEQEKIIVFSQW----QAILIEIARALSLNGIQF--------RNKC 1154
Query: 1490 IESFYQD-----NNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRIS 1544
+ D +N +L+ + G+ GL L A HV L +P NP E QA+ R HR
Sbjct: 1155 TNKDFDDFKNPLSNVTCLLMPLSKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFG 1214
Query: 1545 QEREVYVHRLLIKMSVEDRIVEL 1567
Q+R VHR ++ ++E+ I+ L
Sbjct: 1215 QKRPTKVHRFIVNETIEENILSL 1237
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 81.6 bits (200), Expect = 9e-15
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 1415 NGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEIL-GHFIKKNLGLN 1473
NG + + S K E+ I+ K+ +N ++++F Q T I+ +F +N
Sbjct: 1033 NGVINGAELYRASGKFELLDRILPKLRATN--HRVLLFCQMTSLMTIMEDYFAFRNF--L 1088
Query: 1474 FLRYDGSMSSSQRSACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFV 1532
+LR DG+ S R+A ++ F + + Y + L+S +AG GL L A+ V++ D WNP
Sbjct: 1089 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1148
Query: 1533 EEQAMDRCHRISQEREVYVHRLLIKMSVEDRIV 1565
+ QA DR HRI Q+ EV V RL SVE++I+
Sbjct: 1149 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1181
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 81.6 bits (200), Expect = 9e-15
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 1415 NGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEIL-GHFIKKNLGLN 1473
NG + + S K E+ I+ K+ +N ++++F Q T I+ +F +N
Sbjct: 1033 NGVINGAELYRASGKFELLDRILPKLRATN--HRVLLFCQMTSLMTIMEDYFAFRNF--L 1088
Query: 1474 FLRYDGSMSSSQRSACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFV 1532
+LR DG+ S R+A ++ F + + Y + L+S +AG GL L A+ V++ D WNP
Sbjct: 1089 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1148
Query: 1533 EEQAMDRCHRISQEREVYVHRLLIKMSVEDRIV 1565
+ QA DR HRI Q+ EV V RL SVE++I+
Sbjct: 1149 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1181
>SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1388
Score = 80.9 bits (198), Expect = 2e-14
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 9/165 (5%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLISM 1506
+++IFSQ +ILG ++ G R DG++ ++ R I+ F N+ V L+S
Sbjct: 708 RVLIFSQMVRMLDILGDYLSLR-GYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLST 766
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+AG G+ L A+ VI+ D WNP + QAM R HRI Q+ V V+RLL K ++E+ ++E
Sbjct: 767 RAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLE 826
Query: 1567 LQNKKKTL----VNLAMDPTQIREVN-KLGRKELGFL--FGLNSL 1604
+K L ++L + Q N K +EL + FG +++
Sbjct: 827 RARRKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNM 871
>Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 954
Score = 80.9 bits (198), Expect = 2e-14
Identities = 53/184 (28%), Positives = 93/184 (49%), Gaps = 10/184 (5%)
Query: 1410 KARLKNGYTIDYKSLKESK---KVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFI 1466
K + K+ + + E+K +E LD+++ + EK ++F+ + + + +
Sbjct: 691 KQQQKDALILFFNRTAEAKIPSVIEYILDLLE-----SGREKFLVFAHHKVVLDAITQEL 745
Query: 1467 KKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADP 1526
++ + +R DGS SS++R + F + V ++S+ A N GLT + A+ V+ A+
Sbjct: 746 ERK-HVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAEL 804
Query: 1527 FWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL-QNKKKTLVNLAMDPTQIR 1585
FWNP V QA DR HRI Q V +H L+ K + +D + L Q K K L + T
Sbjct: 805 FWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAGLSETNFS 864
Query: 1586 EVNK 1589
E+ +
Sbjct: 865 EMTE 868
>At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1738
Score = 80.9 bits (198), Expect = 2e-14
Identities = 49/151 (32%), Positives = 79/151 (51%), Gaps = 7/151 (4%)
Query: 1445 TDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQD-NNYRVML 1503
T +++IFSQ +IL ++ G F R DGS + R ++ F ++ L
Sbjct: 968 TKHRVLIFSQMVRMLDILAEYLSLR-GFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFL 1026
Query: 1504 ISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDR 1563
+S +AG G+ L A+ V++ D WNP + QAM R HRI Q+ V ++R + SVE+
Sbjct: 1027 LSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEE 1086
Query: 1564 IVELQNKKKTLVNLAMDPTQIREVNKLGRKE 1594
I+E +K + +D I+++N GR E
Sbjct: 1087 ILERAKRK-----MVLDHLVIQKLNAEGRLE 1112
>Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1739
Score = 80.5 bits (197), Expect = 2e-14
Identities = 50/167 (29%), Positives = 88/167 (51%), Gaps = 4/167 (2%)
Query: 1414 KNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLN 1473
+NG I ++ S K+ + ++ ++ + +++IFSQ +IL ++
Sbjct: 777 ENGQEILLSLIRSSGKLILLDKLLTRLRERGN--RVLIFSQMVRMLDILAEYLTIK-HYP 833
Query: 1474 FLRYDGSMSSSQRSACIESFYQDNNYRV-MLISMKAGNSGLTLTCANHVILADPFWNPFV 1532
F R DGS+ R ++ F D + L+S +AG G+ L A+ V++ D WNP
Sbjct: 834 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 893
Query: 1533 EEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAM 1579
+ QA R HRI Q+++V ++RL+ K +VE+ I+E KK L +L +
Sbjct: 894 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVI 940
>Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 897
Score = 80.1 bits (196), Expect = 3e-14
Identities = 86/354 (24%), Positives = 151/354 (42%), Gaps = 67/354 (18%)
Query: 891 LRDLLEGLKEIETEVEGEDLTPNELT-VNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGL 949
LR EG E V+ +DL LT ++L +Q +G+ WL + + G +L D+MGL
Sbjct: 18 LRLHTEGRAEA-ARVQEQDLRQWGLTGIHLRSYQLEGVNWL-AQRFHCQNGCILGDEMGL 75
Query: 950 GKTVQSLALL--MANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGG 1007
GKT Q++AL +A + + L++ P++VL WK+E G
Sbjct: 76 GKTCQTIALFIYLAGRLNDEGPF---LILCPLSVLSNWKEEMQRFAPGLSCVTYA--GDK 130
Query: 1008 ENNSSKFRSWKDLAEYDIVLVSYQTLASE--FKKHWPLSWKNGEHQPDVHAVDLKLMNQV 1065
E + + K + + ++L +Y+ + F K +P S
Sbjct: 131 EERACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSV-------------------- 170
Query: 1066 KSSDEYFSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIG 1125
+++DEA +KN+ + K S F L+GTPIQN++
Sbjct: 171 -------------------LVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQ 211
Query: 1126 ELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQ-RAMKKVQVLLRAIMLRR 1184
ELYSL+ F+ ++KE ++G + Y D E++ + ++ LL+ +LRR
Sbjct: 212 ELYSLLSFVEPDLFSKE-----EVGDFIQR-----YQDIEKESESGNELHKLLQPFLLRR 261
Query: 1185 TKTSQIDGKPILQLPEKHLKESANKLEGDELEFYQALESKSRDKAKKMLESKQK 1238
K + +LP+K + + + ++Y+A+ K D + K K
Sbjct: 262 VK-----AEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVK 310
Score = 73.6 bits (179), Expect = 2e-12
Identities = 45/133 (33%), Positives = 74/133 (54%), Gaps = 2/133 (1%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMK 1507
++++FSQ T +IL ++ G ++ R DGS+ +R I++F Q + V L+S +
Sbjct: 365 RVLLFSQMTQMLDILQDYMDYR-GYSYERVDGSVRGEERHLAIKNFGQQPIF-VFLLSTR 422
Query: 1508 AGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL 1567
AG G+ LT A+ VI D +NP + QA R HRI Q + V V RL+ + +VE+ +
Sbjct: 423 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRK 482
Query: 1568 QNKKKTLVNLAMD 1580
K L N+ ++
Sbjct: 483 AASKLQLTNMIIE 495
>CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2957
Score = 80.1 bits (196), Expect = 3e-14
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Query: 1418 TIDYKSL-KESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLR 1476
T+ +K+L + S KV + ++ K+ K++IFSQ ++L F+ ++ F R
Sbjct: 1500 TLAHKALIQASGKVVLIEKLLPKLRKDG--HKVLIFSQMVKVLDLLEEFLI-SMSYPFER 1556
Query: 1477 YDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQ 1535
DG++ R A I+ F ++N+ R V L+ +AG G+ LT A+ VI+ D WNP + Q
Sbjct: 1557 IDGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQ 1616
Query: 1536 AMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPT 1582
A RCHRI Q++ V V+RL+ + E + + + K L + T
Sbjct: 1617 AQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQST 1663
>7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1311
Score = 80.1 bits (196), Expect = 3e-14
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 24/173 (13%)
Query: 1447 EKLVIFSQFTMFFEILGHFIK------KNL---------------GLNFLRYDGSMSSSQ 1485
+KL++FSQ +++ HF+ KN G ++ R DGS S Q
Sbjct: 915 DKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQ 974
Query: 1486 RSACIESFYQDNNYR--VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRI 1543
R A + F N R + LIS +AG G+ L AN V++ D WNP + Q++ R +R
Sbjct: 975 REAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRF 1034
Query: 1544 SQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQI-REVNKLGRKEL 1595
Q + Y++RL+ ++E ++ E Q K+ +D QI R N+ EL
Sbjct: 1035 GQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMEL 1087
>Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1709
Score = 79.7 bits (195), Expect = 3e-14
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRV-MLISM 1506
+++IFSQ +IL ++K F R DGS+ R ++ F + + L+S
Sbjct: 806 RVLIFSQMVRMLDILAEYLKYRQ-FPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLST 864
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+AG G+ L A+ V++ D WNP + QA R HRI Q+++V ++RL+ K SVE+ I+E
Sbjct: 865 RAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILE 924
Query: 1567 LQNKKKTLVNLAM 1579
KK L +L +
Sbjct: 925 RAKKKMVLDHLVI 937
Score = 57.0 bits (136), Expect = 2e-07
Identities = 78/360 (21%), Positives = 132/360 (36%), Gaps = 75/360 (20%)
Query: 917 VNLLKHQRQGLRWLVSMEKSSKRGG--LLADDMGLGKTVQSLALLMANKPEPKSAIKTTL 974
+ L +Q GL WL S +G +LAD+MGLGKT+Q+++ L E L
Sbjct: 479 LELRDYQLNGLNWLAH---SWCKGNSCILADEMGLGKTIQTISFLNYLFHE-HQLYGPFL 534
Query: 975 VVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRS--W----KDLAEYDIVLV 1028
+V P++ L W+ E ++ G N+ + R+ W +++I+L
Sbjct: 535 LVVPLSTLTSWQRE---IQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLT 591
Query: 1029 SYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILD 1088
+Y+ L + L+W + +D
Sbjct: 592 TYEILLKDKAFLGGLNWA-------------------------------------FIGVD 614
Query: 1089 EAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSD 1148
EA +KN + K S R ++GTP+QN++ EL+SL+ F+ ++ F +
Sbjct: 615 EAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEE 674
Query: 1149 IGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESAN 1208
G + Y Y ++ L +LRR K EK L
Sbjct: 675 HG----KGREYGYASLHKE---------LEPFLLRRVKKD----------VEKSLPAKVE 711
Query: 1209 KLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGESN 1268
++ E+ Q K SK +G+ S + C H L+K ++N
Sbjct: 712 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 771
>Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 293
Score = 79.7 bits (195), Expect = 3e-14
Identities = 45/156 (28%), Positives = 83/156 (52%), Gaps = 1/156 (0%)
Query: 1439 KVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNN 1498
K+ N K ++F+ + + +N ++R DGS+SSS+R + F +D +
Sbjct: 79 KMMLQNDSLKFLVFAHHLSMLQACTEAVIENK-TRYIRIDGSVSSSERIHLVNQFQKDPD 137
Query: 1499 YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKM 1558
RV ++S++A GLT T A+HV+ A+ +W+P +QA DR HRI Q V +H L+
Sbjct: 138 TRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANG 197
Query: 1559 SVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKE 1594
+++ + + N+K + ++ + + + G KE
Sbjct: 198 TLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKE 233
>ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 556
Score = 79.7 bits (195), Expect = 3e-14
Identities = 48/142 (33%), Positives = 81/142 (56%), Gaps = 4/142 (2%)
Query: 1448 KLVIFSQFTMFFEIL-GHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISM 1506
K V+F T E L G F ++N+ + +R DGS+ S+ R ++ F ++ V L+S+
Sbjct: 396 KFVVFCHHTEMMESLEGFFAERNVPM--IRIDGSVPSTSRHLLVKKFQENEEVMVALLSI 453
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRI-V 1565
A ++GLTLT V+ A+ +WNP V QA DR HRI Q+ V + L+ K ++++ +
Sbjct: 454 TACSTGLTLTAGRAVVFAELYWNPGVLLQAEDRIHRIGQKSSVDIIYLVAKGTIDEYVWP 513
Query: 1566 ELQNKKKTLVNLAMDPTQIREV 1587
+L +K L +L + Q++ V
Sbjct: 514 KLLSKLNVLESLGVGSNQLKNV 535
>At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1339
Score = 79.7 bits (195), Expect = 3e-14
Identities = 47/137 (34%), Positives = 77/137 (55%), Gaps = 4/137 (2%)
Query: 1429 KVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSA 1488
K+EM ++ K+ TD +++ FS T +++ ++ G +LR DG S R A
Sbjct: 1111 KLEMLDRMLPKL--KATDHRVLFFSTMTRLLDVMEDYLTLK-GYKYLRLDGQTSGGDRGA 1167
Query: 1489 CIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQER 1547
I+ F + + + + L+S++AG G+ L A+ VIL D WNP V+ QA R HRI Q++
Sbjct: 1168 LIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKK 1227
Query: 1548 EVYVHRLLIKMSVEDRI 1564
+V V R SVE+++
Sbjct: 1228 DVLVLRFETVNSVEEQV 1244
>7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 701
Score = 79.3 bits (194), Expect = 4e-14
Identities = 45/130 (34%), Positives = 76/130 (57%), Gaps = 4/130 (3%)
Query: 1447 EKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISM 1506
+K +IF+ + + + F+ L ++++R DG S RS +++F + ++ +V L+S+
Sbjct: 536 KKFIIFAHHRVMMDAISDFLS-GLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVALLSL 594
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIV- 1565
KA NSG+TLT A ++ A+ WNP QA R HRI Q + V + R LI + D I+
Sbjct: 595 KACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPV-ICRYLIAHNTADDIIW 653
Query: 1566 -ELQNKKKTL 1574
L+NK++ L
Sbjct: 654 NMLKNKQEVL 663
>At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 675
Score = 78.2 bits (191), Expect = 1e-13
Identities = 47/143 (32%), Positives = 74/143 (50%), Gaps = 3/143 (2%)
Query: 1429 KVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSA 1488
K+ LD ++ V ++ K ++F+ E L F+KK + +R DGS +S R A
Sbjct: 507 KIPAVLDYLENVIEAGC--KFLVFAHHQSMLEELHQFLKKKK-VGCIRIDGSTPASSRQA 563
Query: 1489 CIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQERE 1548
+ F + + ++S++A G+TLT A+ VI A+ W P QA DR HRI Q
Sbjct: 564 LVSDFQDKDEIKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSS 623
Query: 1549 VYVHRLLIKMSVEDRIVELQNKK 1571
V +H LL +V+D I ++ K
Sbjct: 624 VNIHYLLANDTVDDIIWDVVQSK 646
>HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 757
Score = 77.4 bits (189), Expect = 2e-13
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLISM 1506
K++IFSQ +IL ++ + + R DG + + R A I+ F + ++ R V L+
Sbjct: 24 KVLIFSQMVRCLDILEDYLIQRR-YTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCT 82
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+AG G+ LT A+ I+ D WNP + QA RCHRI Q + V V+RL+ + S E + +
Sbjct: 83 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFD 142
Query: 1567 LQNKKKTLVNLAMDPTQIREVNKLG 1591
K + L +D ++++N+ G
Sbjct: 143 -----KASLKLGLDKAVLQDINRKG 162
>Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1953
Score = 77.4 bits (189), Expect = 2e-13
Identities = 71/272 (26%), Positives = 129/272 (47%), Gaps = 52/272 (19%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAP 978
L ++Q +G+ WL+ +++ +LAD+MGLGKT+QS+A L + LV+AP
Sbjct: 183 LREYQLEGVNWLL-FNWYNRQNCILADEMGLGKTIQSIAFLQ--EVYNVGIHGPFLVIAP 239
Query: 979 VAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLAS-EF 1037
++ + W+ E F +W ++ +V + +LAS +
Sbjct: 240 LSTITNWERE-------------------------FNTWTEMN----TIVYHGSLASRQM 270
Query: 1038 KKHWPLSWKN--GEHQPDVHAVDLKLMN-QVKSSDEYFSPFYRNDSEFYRVILDEAQNIK 1094
+ + + K+ G P + D + ++ SD P R + E+ VI+DEA +K
Sbjct: 271 IQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSD---CPELR-EIEWRCVIIDEAHRLK 326
Query: 1095 NKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLN 1154
N+ + + + + L+GTP+QN + EL+SL+ FL + E++F D G
Sbjct: 327 NRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG---- 382
Query: 1155 TKKPYDYNDSERQRAMKKVQVLLRAIMLRRTK 1186
D + + ++K+Q +L+ +MLRR K
Sbjct: 383 --------DLKTEEQVQKLQAILKPMMLRRLK 406
Score = 73.6 bits (179), Expect = 2e-12
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLISM 1506
K++IFSQ +IL ++ + L + R DG + + R A I+ F + ++ R V L+
Sbjct: 523 KVLIFSQMVRCLDILEDYLIQRRYL-YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 581
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+AG G+ LT A+ I+ D WNP + QA RCHRI Q + V V+RL+ + S E + +
Sbjct: 582 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFD 641
Query: 1567 LQNKKKTLVNLAMDPTQIREVNKLG 1591
+ K L + R+ N G
Sbjct: 642 KASLKLGLDKAVLQSMSGRDGNITG 666
>Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2713
Score = 77.4 bits (189), Expect = 2e-13
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 1448 KLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLISM 1506
K++IFSQ +IL ++ + + R DG + + R A I+ F + ++ R V L+
Sbjct: 799 KVLIFSQMVRCLDILEDYLIQRR-YTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCT 857
Query: 1507 KAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVE 1566
+AG G+ LT A+ I+ D WNP + QA RCHRI Q + V V+RL+ + S E + +
Sbjct: 858 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFD 917
Query: 1567 LQNKKKTLVNLAMDPTQIREVNKLG 1591
K + L +D ++++N+ G
Sbjct: 918 -----KASLKLGLDKAVLQDINRKG 937
Score = 75.5 bits (184), Expect = 6e-13
Identities = 62/273 (22%), Positives = 122/273 (43%), Gaps = 54/273 (19%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAP 978
L ++Q +G+ WL+ +++ +LAD+MGLGKT+QS+ L ++ + L++AP
Sbjct: 459 LREYQLEGMNWLL-FNWYNRKNCILADEMGLGKTIQSITFL--SEIFLRGIHGPFLIIAP 515
Query: 979 VAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFK 1038
++ + W+ E FR+W E + ++ ++ +
Sbjct: 516 LSTITNWERE-------------------------FRTW---TEMNAIVYHGSQISRQMI 547
Query: 1039 KHWPLSWKNGEHQP-----DVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYRVILDEAQNI 1093
+ + + +++ + P H V + E + VI+DEA +
Sbjct: 548 QQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPEL------KKIHWSCVIIDEAHRL 601
Query: 1094 KNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVL 1153
KN+ + + ++ + L+GTP+QN++ EL+SL+ FL + E F + G
Sbjct: 602 KNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG--- 658
Query: 1154 NTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTK 1186
D + + +KK+Q +L+ +MLRR K
Sbjct: 659 ---------DLKTEEQVKKLQSILKPMMLRRLK 682
>CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 689
Score = 76.6 bits (187), Expect = 3e-13
Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 10/202 (4%)
Query: 1395 IDDL---RLEYDKMVAEQKARLKNGYTIDYKSLKES-KKVEMCLDIIKKVTDSNTD-EKL 1449
+DDL R +Y+K+ + ++ K+ +++ SL K +C I++ + K+
Sbjct: 439 MDDLQKARADYEKVNSMER---KHESLLEFYSLTGIVKAAAVCEHILENYFYPDAPPRKV 495
Query: 1450 VIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAG 1509
+IF+ + + + + K L +R DG S +R+A +SF D+N RV ++S+ A
Sbjct: 496 LIFAHHQIVLDTIQVEVNKRK-LGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAA 554
Query: 1510 NSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL-Q 1568
G+TLT A+ V+ A+ +NP QA DR HR+ Q+ V+V L+ K + +D + + Q
Sbjct: 555 GVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQ 614
Query: 1569 NKKKTLVNLAMDPTQIREVNKL 1590
K L +++ R +K+
Sbjct: 615 QKLDVLGQVSLSSDTFRTADKM 636
>CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 687
Score = 76.6 bits (187), Expect = 3e-13
Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 10/202 (4%)
Query: 1395 IDDL---RLEYDKMVAEQKARLKNGYTIDYKSLKES-KKVEMCLDIIKKVTDSNTD-EKL 1449
+DDL R +Y+K+ + ++ K+ +++ SL K +C I++ + K+
Sbjct: 437 MDDLQKARADYEKVNSMER---KHESLLEFYSLTGIVKAAAVCEHILENYFYPDAPPRKV 493
Query: 1450 VIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAG 1509
+IF+ + + + + K L +R DG S +R+A +SF D+N RV ++S+ A
Sbjct: 494 LIFAHHQIVLDTIQVEVNKRK-LGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAA 552
Query: 1510 NSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVEL-Q 1568
G+TLT A+ V+ A+ +NP QA DR HR+ Q+ V+V L+ K + +D + + Q
Sbjct: 553 GVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQ 612
Query: 1569 NKKKTLVNLAMDPTQIREVNKL 1590
K L +++ R +K+
Sbjct: 613 QKLDVLGQVSLSSDTFRTADKM 634
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 76.3 bits (186), Expect = 4e-13
Identities = 52/186 (27%), Positives = 91/186 (47%), Gaps = 29/186 (15%)
Query: 1427 SKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGL-------------- 1472
S K+ + ++IIKK + +KL++FSQ ++ ++ G
Sbjct: 946 SNKLILLVEIIKKCEEIG--DKLLVFSQSLESLTLIKRMLEYMAGTGQWFADGHEALNAE 1003
Query: 1473 -----------NFLRYDGSMSSSQRSACIESFYQDNNYR--VMLISMKAGNSGLTLTCAN 1519
+++ DGS+ S +R A SF N R +MLIS +AG+ G + AN
Sbjct: 1004 GEETWSWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAAN 1063
Query: 1520 HVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAM 1579
VI+ D WNP + Q++ R +R Q + VY++R + + ++E+RI + Q K++ +
Sbjct: 1064 RVIIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVV 1123
Query: 1580 DPTQIR 1585
D QI+
Sbjct: 1124 DEAQIQ 1129
Score = 59.3 bits (142), Expect = 5e-08
Identities = 65/285 (22%), Positives = 115/285 (39%), Gaps = 38/285 (13%)
Query: 913 NELTVNLLKHQRQGLRWLV-----SMEK--SSKRGGLLADDMGLGKTVQSLALLMANKPE 965
N L L HQ G++++ S+++ + GG+LA MGLGKT+Q + L
Sbjct: 457 NSLVRILKPHQAHGIQFMYDCAFESLDRLDTEGSGGILAHCMGLGKTLQVITFLHTVLMH 516
Query: 966 PK--SAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXI-------FGGGENNSSKFRS 1016
K K LVV P V+ W E I + E+ ++
Sbjct: 517 EKIGEKCKRVLVVVPKNVIINWFKEFQKWLVDNDEELDTIDVNELDSYKTIEDRRRALKA 576
Query: 1017 WKDLAEYDIVLVSYQ-----TLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEY 1071
W ++++ Y T+ + KK P KN + ++ + E
Sbjct: 577 WHSSKTPSVMIIGYDLFRILTVEDDPKKKKP---KNRNRR-------------LEKAKED 620
Query: 1072 FSPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLI 1131
F + +N V+ DEA +KN + +K I + R L+GTP+QNN+ E + ++
Sbjct: 621 FRKYLQNPGPDM-VVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLMEYHCMV 679
Query: 1132 RFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVL 1176
F++ + +F + ++N + D + E ++ VL
Sbjct: 680 NFVKPGLLGTKTEFANRFVNIINRGRTKDASPLEVSFMKRRCHVL 724
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 76.3 bits (186), Expect = 4e-13
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
++ + K+E+ I+ K+ T ++++F Q T I F+ +LR DGS
Sbjct: 846 MRVAGKLELLDRILPKL--KATGHRILMFFQMTSMMNIFEDFLNFRR-YTYLRLDGSTKP 902
Query: 1484 SQRSACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHR 1542
+R + F N+ + ++S +AG GL L A+ VI+ D WNP + QA DR HR
Sbjct: 903 DERGDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHR 962
Query: 1543 ISQEREVYVHRLLIKMSVEDRIV 1565
I Q++EV V RL+ SVE++I+
Sbjct: 963 IGQKKEVRVLRLITANSVEEKIL 985
>At3g19210 [L] KOG0390 DNA repair protein SNF2 family
Length = 688
Score = 76.3 bits (186), Expect = 4e-13
Identities = 43/131 (32%), Positives = 70/131 (52%), Gaps = 2/131 (1%)
Query: 1445 TDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VML 1503
TD+++V+ S +T ++ ++ FLR DGS + S+R + L
Sbjct: 446 TDDRIVLVSNYTQTLDLFAQLCRERR-YPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFL 504
Query: 1504 ISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDR 1563
+S KAG GL L AN ++L DP WNP ++QA R R Q++ VYV+R L ++E++
Sbjct: 505 LSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEK 564
Query: 1564 IVELQNKKKTL 1574
+ + Q K+ L
Sbjct: 565 VYQRQMSKEGL 575
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 75.9 bits (185), Expect = 5e-13
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 1427 SKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQR 1486
S K E+ I+ K+ S ++++F Q T I+ ++ +LR DGS + R
Sbjct: 735 SGKFELLDRILPKLFRSG--HRILMFFQMTQIMNIMEDYLHYRQW-RYLRLDGSTKADDR 791
Query: 1487 SACIESFYQDN-NYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQ 1545
S + F + L+S +AG GL L A+ VI+ D WNP + QA DR HRI Q
Sbjct: 792 SKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQ 851
Query: 1546 EREVYVHRLLIKMSVEDRIV 1565
+EV ++RL+ + SVE+ I+
Sbjct: 852 TKEVRIYRLITEKSVEENIL 871
>At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 861
Score = 75.9 bits (185), Expect = 5e-13
Identities = 59/194 (30%), Positives = 99/194 (50%), Gaps = 17/194 (8%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSS 1483
++ S K+ + ++K++ DS ++++FSQ T +IL F++ ++ R DGS+ +
Sbjct: 364 VQASGKLLVLDQLLKRLHDSG--HRVLLFSQMTSTLDILQDFMELRR-YSYERLDGSVRA 420
Query: 1484 SQRSACIESF-----------YQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFV 1532
+R A I++F +N V +IS +AG GL L A+ VI + WNP V
Sbjct: 421 EERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQV 480
Query: 1533 EEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLV-NLAMDPTQIREVNKLG 1591
++QA+ R HRI Q V L+ + SVE+ I+ +K L N+ D + +E + G
Sbjct: 481 DKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEEKEED--G 538
Query: 1592 RKELGFLFGLNSLD 1605
+FGL D
Sbjct: 539 GDLRSLVFGLQRFD 552
>At1g05480 [L] KOG0390 DNA repair protein SNF2 family
Length = 588
Score = 74.7 bits (182), Expect = 1e-12
Identities = 63/186 (33%), Positives = 92/186 (48%), Gaps = 28/186 (15%)
Query: 1399 RLEYDKMVAEQ--KARLKNGYTIDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFT 1456
RL D+ + Q K RL ++ + L E VE+C ++IK EK+++FSQ+
Sbjct: 355 RLSIDEALLAQLKKVRLDPNQSVKTRFLMEF--VELC-EVIK--------EKVLVFSQYI 403
Query: 1457 MFFE-ILGHFIKK---NLGLNFLRYDGSMSSSQRSACIESFYQDNNY-RVMLISMKAGNS 1511
+ I+ H + + N G L G + QR I F + +V L S KA +
Sbjct: 404 DPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSE 463
Query: 1512 GLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVE---------- 1561
G++L A+ VIL D WNP VE QA+ R +RI Q+R VY + L+ K + E
Sbjct: 464 GISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQK 523
Query: 1562 DRIVEL 1567
DRI EL
Sbjct: 524 DRISEL 529
>7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1638
Score = 74.7 bits (182), Expect = 1e-12
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 1427 SKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQR 1486
S K E+ I+ K+ +N ++++F Q T I+ ++ +LR DG+ + R
Sbjct: 1097 SGKFELLDRILPKLKATN--HRVLLFCQMTQCMTIIEDYLGWRQ-FGYLRLDGTTKAEDR 1153
Query: 1487 SACIESFY-QDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQ 1545
+ F + ++ V L+S +AG GL L A+ V++ D WNP + QA DR HRI Q
Sbjct: 1154 GELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQ 1213
Query: 1546 EREVYVHRLLIKMSVEDRIV 1565
EV V RL+ SVE+RI+
Sbjct: 1214 RNEVRVLRLMTVNSVEERIL 1233
>SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 768
Score = 74.3 bits (181), Expect = 1e-12
Identities = 58/237 (24%), Positives = 119/237 (49%), Gaps = 9/237 (3%)
Query: 1372 KMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLKNGYTIDYKS-LKESKKV 1430
K + D++ ++ +++ + S LR E + ++ + L++ + + ++ L S K+
Sbjct: 435 KSSVDQKGYYLKILTRLSKICNSTILLRNEKENFLSTE---LQDKHVFEQENMLLSSSKL 491
Query: 1431 EMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACI 1490
++ ++K +K VI SQ+ E++ F+ L + F + GS S+R +
Sbjct: 492 QILAALLKSF--QRGCQKAVIVSQYKETLELIELFLSI-LHVRFCKLLGSTPFSERDLIV 548
Query: 1491 ESFYQDN--NYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQERE 1548
+F + + V+L+S KAG GL LT + +I+ +P WNP + QA+ R +R Q+R
Sbjct: 549 HNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRP 608
Query: 1549 VYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIREVNKLGRKELGFLFGLNSLD 1605
V ++ L +++RI QN K+ L + +D ++ N +++ LF + +
Sbjct: 609 VCIYTFLSSGMLDERIFIRQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLFSYSKTE 665
>CE23323 [L] KOG0390 DNA repair protein SNF2 family
Length = 751
Score = 73.9 bits (180), Expect = 2e-12
Identities = 59/213 (27%), Positives = 103/213 (47%), Gaps = 13/213 (6%)
Query: 1369 VCRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMVAEQKARLK---NGYTIDYKSLK 1425
+C M D ++ + N+ +D+LR + +K A + + L +G + +K
Sbjct: 373 ICDYMTGDALSLIFFARQLANHPKLLLDNLREKTEKSKAHKHSPLLLAFDGAHMPRGGVK 432
Query: 1426 ESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQ 1485
ES K+ +D+IK E VI S + +++ + L LR DG
Sbjct: 433 ESGKLTALVDMIKCFR--LLQECTVIVSNYIETLDMIQQLCEY-LNFKVLRLDGKTQVPD 489
Query: 1486 RSACIESFYQDNNYR----VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCH 1541
R + +F N++R + L+S KAG GL L A+ ++L D WNP ++QAM R
Sbjct: 490 RQKLVRTF---NDHRDPSNIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIW 546
Query: 1542 RISQEREVYVHRLLIKMSVEDRIVELQNKKKTL 1574
R Q R +++RL+ ++E+++++ Q KK L
Sbjct: 547 RDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL 579
>Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1970
Score = 73.2 bits (178), Expect = 3e-12
Identities = 67/258 (25%), Positives = 118/258 (44%), Gaps = 26/258 (10%)
Query: 1347 AKLEPTASFGPKGTNSVNIPCLVCRKMNNDKEAISYQLFDQVNNLNYSIDDLRLEYDKMV 1406
A LE +F KG N+P L+ M K N Y I+ ++ +
Sbjct: 651 AILEKNFTFLSKGGGQANVPNLLNTMMELRKCC----------NHPYLINGA----EEKI 696
Query: 1407 AEQKARLKNGYTIDYK---SLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILG 1463
E+ N + D++ ++ + K+ + ++ K+ +++IFSQ +IL
Sbjct: 697 LEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGG--HRVLIFSQMVRCLDILE 754
Query: 1464 HFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYR-VMLISMKAGNSGLTLTCANHVI 1522
++ + + R DG + + R A I+ F + ++ R V L+ +AG G+ LT A+ I
Sbjct: 755 DYLIQRR-YPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCI 813
Query: 1523 LADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPT 1582
+ D WNP + QA RCHRI Q + V ++RL+ + S E + + + K L +
Sbjct: 814 IFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSM 873
Query: 1583 QIRE-----VNKLGRKEL 1595
RE V +L +KE+
Sbjct: 874 SGRENATNGVQQLSKKEI 891
Score = 72.0 bits (175), Expect = 7e-12
Identities = 67/270 (24%), Positives = 122/270 (44%), Gaps = 48/270 (17%)
Query: 919 LLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVAP 978
L ++Q +G+ WL+ + R +LAD+MGLGKT+QS+ L + K LV+AP
Sbjct: 399 LREYQLEGVNWLL-FNWYNMRNCILADEMGLGKTIQSITFLY--EIYLKGIHGPFLVIAP 455
Query: 979 VAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFK 1038
++ + W+ E FR+W +L ++V+ +
Sbjct: 456 LSTIPNWERE-------------------------FRTWTEL---NVVVYHGSQASRRTI 487
Query: 1039 KHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFS--PFYRNDSEFYRVILDEAQNIKNK 1096
+ + + +K + Q V K + + + + P RN + V++DEA +KN+
Sbjct: 488 QLYEMYFK--DPQGRVIKGSYKFHAIITTFEMILTDCPELRN-IPWRCVVIDEAHRLKNR 544
Query: 1097 KTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTK 1156
+ + + + L+GTP+QN + EL+SL+ FL + E F + G
Sbjct: 545 NCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG------ 598
Query: 1157 KPYDYNDSERQRAMKKVQVLLRAIMLRRTK 1186
D + + ++K+Q +L+ +MLRR K
Sbjct: 599 ------DLKTEEQVQKLQAILKPMMLRRLK 622
>CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1529
Score = 72.4 bits (176), Expect = 5e-12
Identities = 36/100 (36%), Positives = 58/100 (58%)
Query: 1472 LNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPF 1531
++ L DGS+ + R + F +D V++++ G GL LT A+ VI D WNP
Sbjct: 1349 VSHLVLDGSVPAGDRMKMVNRFNEDKTIDVLILTTHVGGVGLNLTGADTVIFLDHDWNPM 1408
Query: 1532 VEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKK 1571
+ QA+DR HR+ Q R V V+RL+ + +VE++++ L K
Sbjct: 1409 KDLQAIDRAHRLGQTRNVNVYRLITQGTVEEKVMSLAKFK 1448
Score = 65.9 bits (159), Expect = 5e-10
Identities = 90/409 (22%), Positives = 158/409 (38%), Gaps = 95/409 (23%)
Query: 916 TVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLV 975
T L ++Q +G+ W+ + G +LADDMGLGKT+Q++ +
Sbjct: 979 TSMLREYQLEGITWIRFLRTYGLHG-ILADDMGLGKTLQTMCSI---------------- 1021
Query: 976 VAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLAS 1035
L V +DE S+F ++V +TL
Sbjct: 1022 -----ALSVDRDEM----------------------SEFHRCS-------LIVCPRTLVD 1047
Query: 1036 EFKKHWPLSWKNGEHQPDVHAVDLKLMNQVK----SSDEYFSPFYRNDSEFYRVILDEAQ 1091
HW L W Q + +L + + + DE Y D + ++LDE
Sbjct: 1048 ----HWCLEWNRFFPQRVPASKNLTRCHGAEICVIAYDE-LKTAYMMDRVWNYIVLDEGH 1102
Query: 1092 NIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSD-IG 1150
++N K +A K + R LSGTP+QN+ +L+SL +L E +F S +
Sbjct: 1103 VMRNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFAWLMPGYLGSEKQFRSQFLK 1162
Query: 1151 AVLNTKKPYDYNDSERQ---RAMKKVQVLLRAIMLRRTKTSQIDGKPILQLPEKHLKESA 1207
++ + P N+++ + A+ ++ L+ ++RR KT + + +LPEK++++
Sbjct: 1163 KIMKCRLP-KANEADLKAGSAAISQLHKLVLPFVMRRLKT-----EVLKELPEKNVQDYE 1216
Query: 1208 NKLEGDELEFYQALESKSRDKAKKMLESKQKQGAYSSIXXXXXXXXQACLHSELVKIGES 1267
+L D+ E Y+ + D+ E + I +H L KIG
Sbjct: 1217 CELTEDQKEIYRFVV----DRCTSSQEDVGLSSLVTLITLRKLTDHTKLVHDTLAKIG-- 1270
Query: 1268 NAKSSKIINGKDFEKDWRPLYFVSKRMGQNQATLNAVNACLDDMTCPVC 1316
P Y +SK + + A+ L + C +C
Sbjct: 1271 -----------------APQYILSKALAAKSGKMEALKQLL--IECEIC 1300
>SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1063
Score = 70.9 bits (172), Expect = 2e-11
Identities = 60/241 (24%), Positives = 102/241 (41%), Gaps = 48/241 (19%)
Query: 912 PNELTVNLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIK 971
P L L ++Q +GL WL ++ + G +LAD+MGLGKTVQS++ +MA E +
Sbjct: 835 PKMLMCKLKEYQLKGLNWLANLYEQGING-ILADEMGLGKTVQSIS-VMAYLAETHNIWG 892
Query: 972 TTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSW-------KDLAEYD 1024
LV+AP + L W+ E +G ++ + W + + +
Sbjct: 893 PFLVIAPASTLHNWQQE--ITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFH 950
Query: 1025 IVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEFYR 1084
+V+ SYQ + + + + W+
Sbjct: 951 VVVTSYQLVVLDAQYFQSVKWQ-------------------------------------Y 973
Query: 1085 VILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAK 1144
+ILDEAQ IK+ + K+ R L+GTPIQN + EL++L+ F+ ++ +
Sbjct: 974 MILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNE 1033
Query: 1145 F 1145
F
Sbjct: 1034 F 1034
>At3g24340 [L] KOG0390 DNA repair protein SNF2 family
Length = 1132
Score = 70.9 bits (172), Expect = 2e-11
Identities = 45/167 (26%), Positives = 84/167 (49%), Gaps = 7/167 (4%)
Query: 1425 KESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNL----GLNFLRYDGS 1480
+E K + +D I+ EK++++SQ+ +++ + G L G
Sbjct: 924 EEGVKTKFLIDFIR--ISGTVKEKVLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGK 981
Query: 1481 MSSSQRSACIESFYQ-DNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDR 1539
+ R I++F + D+ +V+L S KA + G++L A+ V++ D WNP VE QA+ R
Sbjct: 982 VEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWNPSVESQAISR 1041
Query: 1540 CHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMDPTQIRE 1586
RI Q+R V+++ L++K + E Q++K + L T ++
Sbjct: 1042 AFRIGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSSTNEKD 1088
>7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1477
Score = 70.5 bits (171), Expect = 2e-11
Identities = 76/298 (25%), Positives = 124/298 (41%), Gaps = 70/298 (23%)
Query: 896 EGLKEIETEVEGE--DLTPNELTVNLLK-HQRQGLRWLVSMEKSSKRGGLLADDMGLGKT 952
E +++I+ E E DL ++ LK +Q +G+ WL ++ G+LAD+MGLGKT
Sbjct: 509 ESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGI-SGILADEMGLGKT 567
Query: 953 VQSLALLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSS 1012
VQS+A L A + V V+ W
Sbjct: 568 VQSIAFLC------HIAEHYGVFVPDFKVVPYWGSPAERKILRQFW------------DQ 609
Query: 1013 KFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYF 1072
K +D A + +V+ SYQ + S++K
Sbjct: 610 KHLHTRD-ASFHVVITSYQLVVSDYK---------------------------------- 634
Query: 1073 SPFYRNDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIR 1132
Y N ++ ++LDEAQ IK+ +Q K S R LSGTPIQN++ EL++L+
Sbjct: 635 ---YFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 691
Query: 1133 FLRIPPYNKEAKFH----SDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIMLRRTK 1186
F+ ++ +F+ DI + K D ++ + ++ ++L+ MLRR K
Sbjct: 692 FIMPTLFDSHDEFNEWFSKDIESHAENKTGID------EKQISRLHMILKPFMLRRIK 743
>At5g20420 [L] KOG0390 DNA repair protein SNF2 family
Length = 1261
Score = 70.1 bits (170), Expect = 3e-11
Identities = 46/143 (32%), Positives = 76/143 (52%), Gaps = 8/143 (5%)
Query: 1425 KESKKVEMCLDIIKKVTDSNTDEKLVIF----SQFTMFFEILGHFIKKNLGLNFLRYDGS 1480
K+ KV L++I +V EK++IF + MF E+ + + G L G
Sbjct: 1060 KKGSKVMFVLNLIFRVVKR---EKILIFCHNIAPIRMFTELFENIFRWQRGREILTLTGD 1116
Query: 1481 MSSSQRSACIESFYQDNN-YRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDR 1539
+ +R I+ F + N RV+L S+ A G++LT A+ VI+ D WNP +QA+ R
Sbjct: 1117 LELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIAR 1176
Query: 1540 CHRISQEREVYVHRLLIKMSVED 1562
R Q++ VYV++LL + ++E+
Sbjct: 1177 AFRPGQQKVVYVYQLLSRGTLEE 1199
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 68.9 bits (167), Expect = 6e-11
Identities = 61/245 (24%), Positives = 111/245 (44%), Gaps = 37/245 (15%)
Query: 918 NLLKHQRQGLRWLVSMEKSSKRGGLLADDMGLGKTVQSLALLMANKPEPKSAIKTTLVVA 977
+L +Q +GL WL + +LAD+MGLGKT+QSL + + LV+A
Sbjct: 2021 SLRPYQLEGLNWL-KFSWYNTHNCILADEMGLGKTIQSLTFV--HSVYEYGIRGPFLVIA 2077
Query: 978 PVAVLRVWKDEXXXXXXXXXXXXXXIFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEF 1037
P++ + W+ E F W D+ ++V+ + +
Sbjct: 2078 PLSTIPNWQRE-------------------------FEGWTDM---NVVVYHGSVTSKQM 2109
Query: 1038 KKHWPLSWKNGEHQPDVHAVDLKLMNQVKSSDEYFSPFYRNDSEF-YRV-ILDEAQNIKN 1095
+ + +K + + N + ++ E Y + F +R+ ++DEA +KN
Sbjct: 2110 IQDYEYYYKTESGKVLKEPIKF---NVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKN 2166
Query: 1096 KKTQAAKACCTISSTFRWALSGTPIQNNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNT 1155
+ + + ++ R LSGTP+QNNI EL+SL+ FL ++ + +F S+ G+ L T
Sbjct: 2167 RNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEFGS-LRT 2225
Query: 1156 KKPYD 1160
++ D
Sbjct: 2226 EEESD 2230
>Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1359
Score = 67.0 bits (162), Expect = 2e-10
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 21/176 (11%)
Query: 1424 LKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKN-------------- 1469
L+ S K+ + +I++ +K+++FSQ ++ F+ K
Sbjct: 609 LENSPKMVLLFHLIEESV--KLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQ 666
Query: 1470 ---LGLNFLRYDGSMSSSQRSACIESFYQDNNYR--VMLISMKAGNSGLTLTCANHVILA 1524
+++ R DGS + +R I F +N + L+S +AG G+ L AN V++
Sbjct: 667 KWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVF 726
Query: 1525 DPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTLVNLAMD 1580
D WNP + QA+ R +R Q++ Y++RL+ ++E +I + Q K+ + + +D
Sbjct: 727 DASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD 782
>At3g42670 [L] KOG0390 DNA repair protein SNF2 family
Length = 1256
Score = 67.0 bits (162), Expect = 2e-10
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Query: 1425 KESKKVEMCLDIIKKVTDSNTDEKLVIF----SQFTMFFEILGHFIKKNLGLNFLRYDGS 1480
K+ KV L+++ +V EK++IF + +F E+ + + G L G
Sbjct: 1054 KKGSKVMFVLNLVFRVVKR---EKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGD 1110
Query: 1481 MSSSQRSACIESFYQDNNY-RVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDR 1539
+ +R I+ F + RV+L S+ A G++LT A+ VI+ D WNP +QA+ R
Sbjct: 1111 LELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIAR 1170
Query: 1540 CHRISQEREVYVHRLLIKMSVED 1562
R Q++ VYV++LL + ++E+
Sbjct: 1171 AFRPGQQKVVYVYQLLSRGTLEE 1193
>At2g21450 [L] KOG0390 DNA repair protein SNF2 family
Length = 816
Score = 67.0 bits (162), Expect = 2e-10
Identities = 43/156 (27%), Positives = 80/156 (50%), Gaps = 6/156 (3%)
Query: 1423 SLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKK----NLGLNFLRYD 1478
++++ K++ L+++ +T EKL++FSQ+ + + L + LG
Sbjct: 615 NVRDGVKMKFFLNLLALC--ESTGEKLLVFSQYIVPIKTLERLMSSMKGWRLGKEMFTIT 672
Query: 1479 GSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMD 1538
G S+ QR +E F +V S+KA G++L A+ V++ D NP V +QA+
Sbjct: 673 GDSSNEQREWSMERFNNSLEAKVFFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAVA 732
Query: 1539 RCHRISQEREVYVHRLLIKMSVEDRIVELQNKKKTL 1574
R +R Q+R+VY ++L+ S E+ E +K+ +
Sbjct: 733 RAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMM 768
>Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 3124
Score = 66.2 bits (160), Expect = 4e-10
Identities = 40/150 (26%), Positives = 83/150 (54%), Gaps = 5/150 (3%)
Query: 1426 ESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQ 1485
+S K+E +++K+ +++I SQ + +IL F+ + L ++R D + SS Q
Sbjct: 1860 DSGKLEALAILLQKLKSEG--RRVLILSQMILMLDILEMFLNFHY-LTYVRIDENASSEQ 1916
Query: 1486 RSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQ 1545
R + SF +D ++S + +G+ L A+ V+ D NP ++ +A + C RI +
Sbjct: 1917 RQELMRSFNRDRRIFCAILSTHSRTTGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGR 1976
Query: 1546 EREVYVHRLLIKMSVEDRIVELQNKKKTLV 1575
++++++RL+ S+E+++ L+N K L+
Sbjct: 1977 CKDIHIYRLVSGNSIEEKL--LKNGTKDLI 2004
>Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 336
Score = 62.4 bits (150), Expect = 6e-09
Identities = 56/245 (22%), Positives = 110/245 (44%), Gaps = 53/245 (21%)
Query: 947 MGLGKTVQSLA----LLMANKPEPKSAIKTTLVVAPVAVLRVWKDEXXXXXXXXXXXXXX 1002
MGLGKT+QS+ +L+ P L++AP++ + W+ E
Sbjct: 1 MGLGKTIQSITFLYEILLTGIRGP------FLIIAPLSTIANWERE-------------- 40
Query: 1003 IFGGGENNSSKFRSWKDLAEYDIVLVSYQTLASEFKKHWPLSWKNGEHQPDVHAVDLKLM 1062
FR+W D+ ++V+ ++ + + + + +++ + + A + +
Sbjct: 41 -----------FRTWTDI---NVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAI 86
Query: 1063 NQVKSSDEYFSPFYR-NDSEFYRVILDEAQNIKNKKTQAAKACCTISSTFRWALSGTPIQ 1121
+ + + N E+ VI+DEA +KNK + + ++ + L+GTP+Q
Sbjct: 87 --ITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQ 144
Query: 1122 NNIGELYSLIRFLRIPPYNKEAKFHSDIGAVLNTKKPYDYNDSERQRAMKKVQVLLRAIM 1181
N + EL+SL+ FL + E+ F + G D E + ++K+Q +L+ +M
Sbjct: 145 NTVEELFSLLHFLEPLRFPSESTFMQEFG------------DLETEEQVQKLQAILKPMM 192
Query: 1182 LRRTK 1186
LRR K
Sbjct: 193 LRRLK 197
>At2g16390 [L] KOG0390 DNA repair protein SNF2 family
Length = 888
Score = 62.4 bits (150), Expect = 6e-09
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 1419 IDYKSLKESKKVEMCLDIIKKVTDSNTDEKLVIFSQFTM---FFEILGHFIKK-NLGLNF 1474
++ L E K + L++I + DS EKL++FSQ+ + F E L K LG
Sbjct: 685 VEKLDLNEGVKAKFFLNLIN-LCDS-AGEKLLVFSQYLIPLKFLERLAALAKGWKLGKEV 742
Query: 1475 LRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEE 1534
G+ SS QR +E+F + ++ S+KA G++L A+ +++ D NP V
Sbjct: 743 FVLTGNTSSEQREWSMETFNSSPDAKIFFGSIKACGEGISLVGASRILILDVPLNPSVTR 802
Query: 1535 QAMDRCHRISQEREVYVHRLLIKMSVED 1562
QA+ R R Q++ V+ +RL+ S E+
Sbjct: 803 QAIGRAFRPGQKKMVHAYRLIAGSSPEE 830
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 60.5 bits (145), Expect = 2e-08
Identities = 30/74 (40%), Positives = 44/74 (58%)
Query: 1501 VMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIKMSV 1560
+ ++S +AG GL L A+ VI+ D WNP + QA DR HRI Q +EV + RL+ + S+
Sbjct: 8 IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSI 67
Query: 1561 EDRIVELQNKKKTL 1574
E+ I+ K L
Sbjct: 68 EENILSRAQYKLDL 81
>At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 1178
Score = 56.2 bits (134), Expect = 4e-07
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 1438 KKVTDSNTDEKLVIFSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDN 1497
+++ + K+V+F+ + + FI G+ F+R DG+ R ++SF +
Sbjct: 534 EEIDGDRSSTKMVVFAHHHKVLDGIQEFICDK-GIGFVRIDGTTLPRDRQLAVQSFQFSS 592
Query: 1498 NYRVMLISMKAGNSGLTLTCANHVILADPFWNPFVEEQAMDRCHRISQEREVYVHRLLIK 1557
++ +I ++AG GL + A +V+ + P + QA DR HR Q V V+ K
Sbjct: 593 EVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAK 652
Query: 1558 MSVEDRIVELQNKKKTLVNLAMD 1580
++++ + NKK ++ D
Sbjct: 653 DTMDESNWQNLNKKLHRISSTTD 675
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,804,906
Number of Sequences: 60738
Number of extensions: 3658565
Number of successful extensions: 13529
Number of sequences better than 1.0e-05: 153
Number of HSP's better than 0.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12755
Number of HSP's gapped (non-prelim): 538
length of query: 1605
length of database: 30,389,216
effective HSP length: 120
effective length of query: 1485
effective length of database: 23,100,656
effective search space: 34304474160
effective search space used: 34304474160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)