ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1409 normal R KOG0118 General function prediction only FOG: RRM domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1409 494240 495859 540
(540 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR212w [R] KOG0118 FOG: RRM domain 317 4e-86
SPAC17A2.09c [R] KOG0118 FOG: RRM domain 136 9e-32
At5g19350 [R] KOG0118 FOG: RRM domain 117 6e-26
YHR086w [R] KOG0118 FOG: RRM domain 115 2e-25
At3g19130 [R] KOG0118 FOG: RRM domain 113 8e-25
At1g47500 [R] KOG0118 FOG: RRM domain 112 1e-24
At1g47490 [R] KOG0118 FOG: RRM domain 111 2e-24
At1g11650 [R] KOG0118 FOG: RRM domain 107 3e-23
At1g49600 [R] KOG0118 FOG: RRM domain 106 8e-23
At4g27000 [R] KOG0118 FOG: RRM domain 105 1e-22
At5g54900 [R] KOG0118 FOG: RRM domain 101 3e-21
Hs8923460 [R] KOG0118 FOG: RRM domain 91 3e-18
SPBC23E6.01c [R] KOG0118 FOG: RRM domain 84 5e-16
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 80 1e-14
7295704 [R] KOG0118 FOG: RRM domain 80 1e-14
Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 79 1e-14
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 75 3e-13
Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 74 7e-13
YNL016w [R] KOG0118 FOG: RRM domain 71 5e-12
At1g54080 [R] KOG0118 FOG: RRM domain 71 5e-12
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 70 1e-11
At3g14100 [R] KOG0118 FOG: RRM domain 70 1e-11
7291222 [R] KOG0151 Predicted splicing regulator contains RRM SW... 67 9e-11
CE06396 [R] KOG0118 FOG: RRM domain 66 2e-10
At1g17370 [R] KOG0118 FOG: RRM domain 65 3e-10
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 63 1e-09
7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 62 2e-09
At3g23830 [R] KOG0118 FOG: RRM domain 62 3e-09
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 61 4e-09
At3g53460 [R] KOG0118 FOG: RRM domain 60 6e-09
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 60 1e-08
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 59 2e-08
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 59 2e-08
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 59 2e-08
At5g51300 [A] KOG0119 Splicing factor 1/branch point binding pro... 59 2e-08
Hs20537092 [R] KOG0151 Predicted splicing regulator contains RRM... 57 9e-08
Hs4502847 [R] KOG0118 FOG: RRM domain 56 2e-07
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 55 2e-07
At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protei... 55 2e-07
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 55 3e-07
At5g06210 [R] KOG0118 FOG: RRM domain 55 3e-07
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 55 4e-07
At3g11400 [J] KOG0122 Translation initiation factor 3 subunit g ... 55 4e-07
SPBC18H10.04c [R] KOG0118 FOG: RRM domain 54 5e-07
At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 54 5e-07
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 54 5e-07
Hs9558733 [R] KOG0118 FOG: RRM domain 54 6e-07
At2g18510 [A] KOG0131 Splicing factor 3b subunit 4 54 6e-07
At3g26420 [R] KOG0118 FOG: RRM domain 54 8e-07
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 54 8e-07
At2g37220 [R] KOG0118 FOG: RRM domain 53 1e-06
At1g74230 [R] KOG0118 FOG: RRM domain 53 1e-06
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 52 2e-06
At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 52 2e-06
At1g60000 [R] KOG0118 FOG: RRM domain 52 2e-06
Hs14731277 [R] KOG0118 FOG: RRM domain 52 2e-06
CE28070 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 52 2e-06
CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 52 2e-06
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 52 3e-06
At3g08000 [R] KOG0118 FOG: RRM domain 52 3e-06
At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 52 3e-06
SPAC328.05 [R] KOG0118 FOG: RRM domain 51 4e-06
At5g25060 [R] KOG0151 Predicted splicing regulator contains RRM ... 51 4e-06
At4g39260 [R] KOG0118 FOG: RRM domain 51 4e-06
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 51 5e-06
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 51 5e-06
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 51 5e-06
Hs4503259 [R] KOG0118 FOG: RRM domain 51 5e-06
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 51 5e-06
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 51 5e-06
At5g50250 [R] KOG0118 FOG: RRM domain 51 5e-06
At5g61030 [R] KOG0118 FOG: RRM domain 50 7e-06
At5g04280 [R] KOG0118 FOG: RRM domain 50 7e-06
At4g13850 [R] KOG0118 FOG: RRM domain 50 7e-06
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 50 7e-06
Hs4759098 [R] KOG0118 FOG: RRM domain 50 9e-06
CE18507 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 50 9e-06
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 50 9e-06
At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 50 9e-06
At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfa... 50 9e-06
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 50 9e-06
7296727 [R] KOG0226 RNA-binding proteins 50 9e-06
>YBR212w [R] KOG0118 FOG: RRM domain
Length = 672
Score = 317 bits (811), Expect = 4e-86
Identities = 165/262 (62%), Positives = 193/262 (72%), Gaps = 21/262 (8%)
Query: 4 IPAPPTTTLQSSNELPRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPIN 63
IP PP++T+++S E PRTLWMGDLDP FDE I IW L K V VKLI++K N L+P +
Sbjct: 18 IPLPPSSTVETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCS 77
Query: 64 STSIPNNASSNA--------------------LEINGVSFIDPNKTNLHHAGYCFVEFES 103
STS NN +S + ING+SFIDP+ T LHHAGYCFVEFE+
Sbjct: 78 STSSSNNNTSEENAENQQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFET 137
Query: 104 FEDAQQALTLNATPIPNISCNTTASKRTNDDGKRKFRLNWANGATLHSTILPTPEFSLFV 163
+DA+ AL+LNATP+PN TT S+ TN KR FRLNWA+GATL S+I TPEFSLFV
Sbjct: 138 QKDAKFALSLNATPLPNFYSPTTNSQ-TNPTFKRTFRLNWASGATLQSSIPSTPEFSLFV 196
Query: 164 GDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNG 223
GDLSP ATEADLLSLFQT++ SVKTVRVMTDP+TG+SRCFGFVRF +E ERR ALIEM+G
Sbjct: 197 GDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSG 256
Query: 224 VQFQGRQLRVAYATPRNNVAQQ 245
FQGR LRVAYATPRNN+ Q
Sbjct: 257 KWFQGRALRVAYATPRNNMMLQ 278
Score = 110 bits (276), Expect = 4e-24
Identities = 52/82 (63%), Positives = 63/82 (76%)
Query: 435 NNAMNAGVSSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAE 494
+N N ++TTVFVGGL P E QL LFKPFG I +V+IP GK CGFVK+ +R++AE
Sbjct: 350 SNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAE 409
Query: 495 AAINGLQGFIIMGSPIRLSWGR 516
A+I GLQGFI+ GSPIRLSWGR
Sbjct: 410 ASIQGLQGFIVGGSPIRLSWGR 431
>SPAC17A2.09c [R] KOG0118 FOG: RRM domain
Length = 632
Score = 136 bits (342), Expect = 9e-32
Identities = 85/245 (34%), Positives = 129/245 (51%), Gaps = 52/245 (21%)
Query: 6 APPTTTLQS----SNELPRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVP 61
+P +T LQ +++ TLWMGDL+P D I +W SL + V VK+++SK
Sbjct: 67 SPSSTPLQDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSK------ 120
Query: 62 INSTSIPNNASSNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALT-LNATPIPN 120
ASS+ I+ YCFV+F S A++AL N T IP
Sbjct: 121 ---------ASSSETLIS----------------YCFVQFSSSAAAERALMKYNNTMIPG 155
Query: 121 ISCNTTASKRTNDDGKRKFRLNWANGATL--HSTILPTPEFSLFVGDLSPFATEADLLSL 178
C F+LNWA G + ++ + PEFS+FVGDL P ++DL
Sbjct: 156 AHCT--------------FKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMT 201
Query: 179 FQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATP 238
F++ Y S + +++ DP+TG SR +GFVRF++E E+++AL+ M G QGR LR++ A+P
Sbjct: 202 FRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP 261
Query: 239 RNNVA 243
++ +
Sbjct: 262 KSRAS 266
Score = 82.8 bits (203), Expect = 1e-15
Identities = 40/72 (55%), Positives = 53/72 (73%)
Query: 444 STTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQGF 503
+TTVFVGGL N++E L F+PFG I ++KIP GK CGFV+Y+E+ AE AIN +QG
Sbjct: 296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGA 355
Query: 504 IIMGSPIRLSWG 515
++ S IRL+WG
Sbjct: 356 LVGTSHIRLAWG 367
>At5g19350 [R] KOG0118 FOG: RRM domain
Length = 425
Score = 117 bits (292), Expect = 6e-26
Identities = 82/244 (33%), Positives = 116/244 (46%), Gaps = 51/244 (20%)
Query: 5 PAPPTTTLQSSNELP--RTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPI 62
P PP + L RTLW+GDL DE + S + G+ V VK+I++K
Sbjct: 7 PQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKI------ 60
Query: 63 NSTSIPNNASSNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPNI 121
T P GY F+EF S A++ L T N T +P
Sbjct: 61 --TGQPE-------------------------GYGFIEFISHAAAERTLQTYNGTQMPGT 93
Query: 122 SCNTTASKRTNDDGKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQT 181
FRLNWA+ + + P+ S+FVGDL+P T+ L F+
Sbjct: 94 ELT--------------FRLNWASFGS-GQKVDAGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 182 KYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNN 241
Y+SV+ +V+TDP TG S+ +GFV+FA E+ER A+ EMNG+ R +R++ ATP+ N
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 242 VAQQ 245
V Q
Sbjct: 199 VGVQ 202
Score = 55.8 bits (133), Expect = 2e-07
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 442 VSSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQ 501
V+ TT+ V L+ N+ E +L + F G + VKIP K G+V++ R AE A+ +Q
Sbjct: 234 VTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQ 293
Query: 502 GFIIMGSPIRLSWGR 516
G +I +R+SW +
Sbjct: 294 GQVIGQQAVRISWSK 308
>YHR086w [R] KOG0118 FOG: RRM domain
Length = 523
Score = 115 bits (287), Expect = 2e-25
Identities = 79/234 (33%), Positives = 114/234 (47%), Gaps = 44/234 (18%)
Query: 22 LWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNASSNALEINGV 81
L+MGDLDP +D+ + IW SLG++ IN + NN +N
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEA--------------NINVRMMWNNTLNNGSR---- 97
Query: 82 SFIDPNKTNLHHAGYCFVEFESFEDAQQALTLNATPIPNISCNTTASKRTNDDGKRKFRL 141
S + P ++ GYCFV+F S A AL N IPN +K +L
Sbjct: 98 SSMGPK----NNQGYCFVDFPSSTHAANALLKNGMLIPNFP-------------NKKLKL 140
Query: 142 NWANGATLHST-----ILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPI 196
NWA + +S + S+FVGDL+P TE+ L LF +Y S +++ D +
Sbjct: 141 NWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQV 200
Query: 197 TGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGN 250
TG S+ +GFV+F N E++ AL EM GV GR ++V + + QQH+SGN
Sbjct: 201 TGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQ----QQHVSGN 250
Score = 91.7 bits (226), Expect = 3e-18
Identities = 45/74 (60%), Positives = 56/74 (74%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQG 502
++TTVF+GGL+ + E +L F+PFGTI VKIP GK CGFV+Y +RL AEAAI G+QG
Sbjct: 311 NNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQG 370
Query: 503 FIIMGSPIRLSWGR 516
F I S +RLSWGR
Sbjct: 371 FPIANSRVRLSWGR 384
>At3g19130 [R] KOG0118 FOG: RRM domain
Length = 435
Score = 113 bits (282), Expect = 8e-25
Identities = 82/239 (34%), Positives = 112/239 (46%), Gaps = 49/239 (20%)
Query: 13 QSSNELPRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNAS 72
+ S + +TLW+GDL DE + S + G+ VK+I+
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIR------------------- 141
Query: 73 SNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALTLNATPIPNISCNTTASKRTN 132
NK GY FVEF S A++ L N + S N
Sbjct: 142 --------------NKLTSQSEGYGFVEFLSRAAAEEVLQ-----------NYSGSVMPN 176
Query: 133 DDGKRKFRLNWANGATLHSTILPT-PEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRV 191
D + FR+NWA+ +T + P+ S+FVGDLSP T+ L F +Y SVK+ +V
Sbjct: 177 SD--QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKV 234
Query: 192 MTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVA--QQHLS 248
+ D TG S+ +GFVRF +E ER AL EMNG RQ+RV ATP+ +A QQH S
Sbjct: 235 VIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSS 293
Score = 75.1 bits (183), Expect = 3e-13
Identities = 34/74 (45%), Positives = 50/74 (66%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQG 502
++ T+FVGG++P++ + L + F FG + VKIP GK CGFV++ +R AE AI L G
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG 378
Query: 503 FIIMGSPIRLSWGR 516
+I + +RLSWGR
Sbjct: 379 TVIGKNTVRLSWGR 392
>At1g47500 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 112 bits (281), Expect = 1e-24
Identities = 80/234 (34%), Positives = 112/234 (47%), Gaps = 51/234 (21%)
Query: 20 RTLWMGDLDPGFDELIIASIWQSLGKS--VKVKLIKSKTNALVPINSTSIPNNASSNALE 77
+T+W+GDL DE + S + S + V +K+I++K +N SS
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNK-------------HNGSSE--- 146
Query: 78 INGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALT-LNATPIPNISCNTTASKRTNDDGK 136
GY FVEFES + A + L N P+PN
Sbjct: 147 -----------------GYGFVEFESHDVADKVLQEFNGAPMPNTD-------------- 175
Query: 137 RKFRLNWANGATLHSTILPT-PEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDP 195
+ FRLNWA+ +T + P+ S+FVGDL+P ++A L F KY SVK +V+ D
Sbjct: 176 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDA 235
Query: 196 ITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSG 249
TG S+ +GFVRF +E ER A+ EMNGV+ R +R+ ATPR Q G
Sbjct: 236 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGG 289
Score = 72.8 bits (177), Expect = 1e-12
Identities = 35/73 (47%), Positives = 47/73 (63%)
Query: 444 STTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQGF 503
+TT+FVGGL+ ++ + L + F FG I VKIP GK CGFV++ R AE A+ L G
Sbjct: 305 NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT 364
Query: 504 IIMGSPIRLSWGR 516
+I +RLSWGR
Sbjct: 365 VIGKQTVRLSWGR 377
>At1g47490 [R] KOG0118 FOG: RRM domain
Length = 432
Score = 111 bits (278), Expect = 2e-24
Identities = 80/234 (34%), Positives = 109/234 (46%), Gaps = 51/234 (21%)
Query: 20 RTLWMGDLDPGFDELIIASIWQSLGKS--VKVKLIKSKTNALVPINSTSIPNNASSNALE 77
+T+W+GDL DE + S + S + V VK+I++K N L
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGL------------------ 142
Query: 78 INGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALT-LNATPIPNISCNTTASKRTNDDGK 136
GY FVEFES + A + L N T +PN
Sbjct: 143 ---------------SEGYGFVEFESHDVADKVLREFNGTTMPNTD-------------- 173
Query: 137 RKFRLNWANGATLHSTILPT-PEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDP 195
+ FRLNWA+ +T + P+ S+FVGDLSP ++ L F KY SVK +V+ D
Sbjct: 174 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA 233
Query: 196 ITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSG 249
TG S+ +GFVRF +E ER A+ EMNGV+ R +R+ ATPR Q G
Sbjct: 234 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGG 287
Score = 73.6 bits (179), Expect = 7e-13
Identities = 35/75 (46%), Positives = 48/75 (63%)
Query: 442 VSSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQ 501
+ +TT+FVGGL+ ++ + L + F FG I VKIP GK CGFV++ R AE A+ L
Sbjct: 301 IMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 360
Query: 502 GFIIMGSPIRLSWGR 516
G +I +RLSWGR
Sbjct: 361 GTVIGKQTVRLSWGR 375
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 107 bits (268), Expect = 3e-23
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 49/245 (20%)
Query: 2 PTIPAPPTTTLQSSNELPRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVP 61
P APP+ +++E+ RTLW+GDL DE + + G+ V K+I++K V
Sbjct: 45 PQAAAPPSVQPTTADEI-RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQV- 102
Query: 62 INSTSIPNNASSNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPN 120
GY F+EF S A++ L T N PIP+
Sbjct: 103 --------------------------------EGYGFIEFASHAAAERVLQTFNNAPIPS 130
Query: 121 ISCNTTASKRTNDDGKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQ 180
+ FRLNWA+ ++ +P++++FVGDL+ T+ LL F+
Sbjct: 131 FP-------------DQLFRLNWASLSSGDKRD-DSPDYTIFVGDLAADVTDYILLETFR 176
Query: 181 TKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRN 240
Y SVK +V+ D +TG ++ +GFVRF++E+E+ A+ EMNGV R +R+ A +
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Query: 241 NVAQQ 245
V Q
Sbjct: 237 GVTGQ 241
Score = 75.5 bits (184), Expect = 2e-13
Identities = 35/74 (47%), Positives = 52/74 (69%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQG 502
++TTVFVGGL+ ++ + L +F +G I VKIP GK+CGFV+++E+ AE A+ L G
Sbjct: 259 NNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNG 318
Query: 503 FIIMGSPIRLSWGR 516
+ G+ +RLSWGR
Sbjct: 319 VQLGGTTVRLSWGR 332
>At1g49600 [R] KOG0118 FOG: RRM domain
Length = 445
Score = 106 bits (265), Expect = 8e-23
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 49/233 (21%)
Query: 20 RTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNASSNALEIN 79
+TLW+GDL DE + + + + VK+I+
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIR-------------------------- 152
Query: 80 GVSFIDPNKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPNISCNTTASKRTNDDGKRK 138
NK GY FVEF S A++AL + + +PN ++
Sbjct: 153 -------NKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPN--------------AEQP 191
Query: 139 FRLNWANGATLHSTILPT-PEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPIT 197
FRLNWA+ +T P+ S+FVGDL+P ++A LL F +Y SVK +V+ D T
Sbjct: 192 FRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNT 251
Query: 198 GASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGN 250
G S+ +GFVRF +E ER A+ EMNG RQ+RV ATP+ A +G+
Sbjct: 252 GRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGS 304
Score = 78.6 bits (192), Expect = 2e-14
Identities = 39/83 (46%), Positives = 54/83 (64%), Gaps = 1/83 (1%)
Query: 435 NNAMNAGVSS-TTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEA 493
N +M+ G S+ +T+FVGGL+ ++ E L + F FG + VKIP GK CGFV++ R A
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSA 375
Query: 494 EAAINGLQGFIIMGSPIRLSWGR 516
E AI L G +I + +RLSWGR
Sbjct: 376 EEAIGNLNGTVIGKNTVRLSWGR 398
>At4g27000 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 105 bits (263), Expect = 1e-22
Identities = 74/245 (30%), Positives = 112/245 (45%), Gaps = 53/245 (21%)
Query: 20 RTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNASSNALEIN 79
R+LW+GDL P DE + +++ G++ K+I+
Sbjct: 80 RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIR-------------------------- 113
Query: 80 GVSFIDPNKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPNISCNTTASKRTNDDGKRK 138
NK N + GY F+EF + A++ L T N P+P+ ++
Sbjct: 114 -------NKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPS--------------SEQA 152
Query: 139 FRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITG 198
FRLNWA PE ++FVGDL+P T+ L F+ Y+SVK +V+ D TG
Sbjct: 153 FRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTG 212
Query: 199 ASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLS-----GNLGQ 253
S+ +GFVRFA+E+E+ A+ EMNG R +R A + + Q S GN G+
Sbjct: 213 RSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGE 272
Query: 254 QLHSN 258
+N
Sbjct: 273 SDPTN 277
Score = 73.2 bits (178), Expect = 1e-12
Identities = 36/81 (44%), Positives = 52/81 (63%)
Query: 436 NAMNAGVSSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEA 495
N+ + ++TT+FVG ++ ++ E L +F FG + VKIP GK+CGFV+Y R AE
Sbjct: 269 NSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQ 328
Query: 496 AINGLQGFIIMGSPIRLSWGR 516
A++ L G + G IRLSWGR
Sbjct: 329 ALSVLNGTQLGGQSIRLSWGR 349
>At5g54900 [R] KOG0118 FOG: RRM domain
Length = 390
Score = 101 bits (252), Expect = 3e-21
Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 49/228 (21%)
Query: 20 RTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNASSNALEIN 79
++LW+GDL DE I S++ G++ K+I+
Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIR-------------------------- 93
Query: 80 GVSFIDPNKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPNISCNTTASKRTNDDGKRK 138
NK GY F+EF S A++ L T N P+P+ ++
Sbjct: 94 -------NKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPST--------------EQT 132
Query: 139 FRLNWAN-GATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPIT 197
FRLNWA GA P+ ++FVGDL+P T+ L F+ Y SVK +V+ D T
Sbjct: 133 FRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTT 192
Query: 198 GASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQ 245
G S+ +GFVRFA+E E+ A+ EMNG R +R+ A +N + Q
Sbjct: 193 GRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Score = 82.4 bits (202), Expect = 2e-15
Identities = 41/86 (47%), Positives = 56/86 (64%), Gaps = 3/86 (3%)
Query: 434 NNNAMNAG---VSSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNER 490
N NAG ++TT+FVGGL+ N+ + +L +F FG + VKIPPGK+CGFV+Y +
Sbjct: 246 NTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANK 305
Query: 491 LEAEAAINGLQGFIIMGSPIRLSWGR 516
AE A++ L G + G IRLSWGR
Sbjct: 306 ASAEHALSVLNGTQLGGQSIRLSWGR 331
>Hs8923460 [R] KOG0118 FOG: RRM domain
Length = 287
Score = 91.3 bits (225), Expect = 3e-18
Identities = 71/222 (31%), Positives = 108/222 (47%), Gaps = 52/222 (23%)
Query: 21 TLWMGDLDPGFDELIIASIWQSLGKSV-KVKLIKSKTNALVPINSTSIPNNASSNALEIN 79
+LWMGDL+P DE I+ + ++G++V VK+I+++ T IP
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL--------TGIP----------- 44
Query: 80 GVSFIDPNKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPNISCNTTASKRTNDDGKRK 138
AGYCFVEF A++ L +N P+P T +KR
Sbjct: 45 --------------AGYCFVEFADLATAEKCLHKINGKPLPG----ATPAKR-------- 78
Query: 139 FRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITG 198
F+LN+A +PE+SLFVGDL+P + L F Y S + +V+ D TG
Sbjct: 79 FKLNYATYGKQPDN---SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TG 134
Query: 199 ASRCFGFVRFANETERRNALIEMNG-VQFQGRQLRVAYATPR 239
S+ +GFV+F +E E++ AL E G V + +R++ A P+
Sbjct: 135 VSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
>SPBC23E6.01c [R] KOG0118 FOG: RRM domain
Length = 255
Score = 84.0 bits (206), Expect = 5e-16
Identities = 43/77 (55%), Positives = 55/77 (70%)
Query: 440 AGVSSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAING 499
A +++TVFVGGL+ ++E +L LF+ FG I VKIPPGK CGFV++ R AE AIN
Sbjct: 80 ADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQ 139
Query: 500 LQGFIIMGSPIRLSWGR 516
LQG+ + S IRLSWGR
Sbjct: 140 LQGYPLGNSRIRLSWGR 156
Score = 50.4 bits (119), Expect = 7e-06
Identities = 24/49 (48%), Positives = 33/49 (66%)
Query: 192 MTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRN 240
MTDP T SR +GFVRF +E ++++AL EM G R +RV ATP++
Sbjct: 1 MTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS 49
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 79.7 bits (195), Expect = 1e-14
Identities = 64/243 (26%), Positives = 98/243 (39%), Gaps = 54/243 (22%)
Query: 19 PRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNASSNALEI 78
PRTL++G+L E++I ++ +G K+I T+
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-------------------- 47
Query: 79 NGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALT-LNATPIPNISCNTTASKRTNDDGKR 137
DP YCFVEF DA AL +N I +
Sbjct: 48 ------DP---------YCFVEFYEHRDAAAALAAMNGRKILG----------------K 76
Query: 138 KFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPIT 197
+ ++NWA + F +FVGDLSP T D+ S F + + RV+ D T
Sbjct: 77 EVKVNWATTPSSQKKDTSN-HFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMAT 134
Query: 198 GASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGNLGQQLHS 257
G S+ +GFV F N+ + NA++ M G GRQ+R +AT + + N Q
Sbjct: 135 GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 194
Query: 258 NII 260
+++
Sbjct: 195 DVV 197
>7295704 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 79.7 bits (195), Expect = 1e-14
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 24/171 (14%)
Query: 87 NKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPNISCNTTASKRTNDDGKRKFRLNWAN 145
NK AGYCFV F S + A A+ LN PIP + +FRLN A+
Sbjct: 25 NKYTGEPAGYCFVNFISDDHALDAMHKLNGKPIPGTNPIV------------RFRLNSAS 72
Query: 146 GATLHSTILP--TPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCF 203
+S LP EFS++VGDLS + L +F +K+ S+KT +V+ D + G S+ +
Sbjct: 73 ----NSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSL-GFSKGY 127
Query: 204 GFVRFANETERRNALIEMNG-VQFQGRQLRVAYATPRNNVAQQHLSGNLGQ 253
GFVRF E E+++AL +MNG + + +++ A P+ + L G +G+
Sbjct: 128 GFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK---PKSELGGAVGE 175
>Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 386
Score = 79.3 bits (194), Expect = 1e-14
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 51/250 (20%)
Query: 16 NELPRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNASSNA 75
+E+P+TL++G+L E +I ++ +G K+I
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN----------------- 45
Query: 76 LEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALT-LNATPIPN----ISCNTTASKR 130
DP YCFVEF A AL +N I ++ TT S +
Sbjct: 46 ---------DP---------YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQ 87
Query: 131 TNDDGKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVR 190
D + +T+ ST F +FVGDLSP T D+ + F + + R
Sbjct: 88 KKD----------TSSSTVVSTQRSQDHFHVFVGDLSPQITTEDIKAAF-APFGRISDAR 136
Query: 191 VMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGN 250
V+ D TG S+ +GFV F N+ + NA+ +M G GRQ+R +AT + + N
Sbjct: 137 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 196
Query: 251 LGQQLHSNII 260
Q + ++
Sbjct: 197 TKQLSYDEVV 206
Score = 52.4 bits (124), Expect = 2e-06
Identities = 24/74 (32%), Positives = 40/74 (53%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQG 502
S+ TV+ GG+ + E + + F PFG I ++++ P K FV++N A AI + G
Sbjct: 212 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
Query: 503 FIIMGSPIRLSWGR 516
I G ++ WG+
Sbjct: 272 TTIEGHVVKCYWGK 285
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 74.7 bits (182), Expect = 3e-13
Identities = 61/246 (24%), Positives = 97/246 (38%), Gaps = 54/246 (21%)
Query: 16 NELPRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNASSNA 75
+E+P+TL++G+L E +I ++ +G K+I
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN----------------- 45
Query: 76 LEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALT-LNATPIPNISCNTTASKRTNDD 134
DP YCFVEF A AL +N I
Sbjct: 46 ---------DP---------YCFVEFHEHRHAAAALAAMNGRKIMG-------------- 73
Query: 135 GKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTD 194
++ ++NWA + F +FVGDLSP T D+ + F + + RV+ D
Sbjct: 74 --KEVKVNWATTPSSQKKDTSN-HFHVFVGDLSPQITTEDIKAAF-APFGRISDARVVKD 129
Query: 195 PITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGNLGQQ 254
TG S+ +GFV F N+ + NA+ +M G GRQ+R +AT + + N Q
Sbjct: 130 MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL 189
Query: 255 LHSNII 260
+ ++
Sbjct: 190 SYDEVV 195
Score = 52.4 bits (124), Expect = 2e-06
Identities = 24/74 (32%), Positives = 40/74 (53%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQG 502
S+ TV+ GG+ + E + + F PFG I ++++ P K FV++N A AI + G
Sbjct: 201 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 260
Query: 503 FIIMGSPIRLSWGR 516
I G ++ WG+
Sbjct: 261 TTIEGHVVKCYWGK 274
>Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 265
Score = 73.6 bits (179), Expect = 7e-13
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 96 YCFVEFESFEDAQQALT-LNATPIPNISCNTTASKRTNDDGKRKFRLNWANGATLHSTIL 154
YCFVEF DA AL +N I ++ ++NWA +
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILG----------------KEVKVNWATTPSSQKKDT 54
Query: 155 PTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETER 214
F +FVGDLSP T D+ S F + + RV+ D TG S+ +GFV F N+ +
Sbjct: 55 SN-HFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 112
Query: 215 RNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGNLGQQLHSNII 260
NA++ M G GRQ+R +AT + + N Q +++
Sbjct: 113 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVV 158
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 70.9 bits (172), Expect = 5e-12
Identities = 66/239 (27%), Positives = 103/239 (42%), Gaps = 57/239 (23%)
Query: 4 IPAPPTTTLQSSNELPRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPIN 63
+PA T + +++ R L++G+LD E I+ +Q G +K++
Sbjct: 61 VPANAITGGRETSD--RVLYVGNLDKAITEDILKQYFQVGGPIANIKIM----------- 107
Query: 64 STSIPNNASSNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPNIS 122
ID N N++ Y FVE+ DA AL TLN I N
Sbjct: 108 --------------------IDKNNKNVN---YAFVEYHQSHDANIALQTLNGKQIEN-- 142
Query: 123 CNTTASKRTNDDGKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTK 182
++NWA + S+ F+LFVGDL+ + L + F+
Sbjct: 143 --------------NIVKINWAFQSQQSSS---DDTFNLFVGDLNVNVDDETLRNAFKD- 184
Query: 183 YNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNN 241
+ S + VM D TG+SR +GFV F ++ + +NA+ M G GR LR+ +A R+N
Sbjct: 185 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDN 243
Score = 51.2 bits (121), Expect = 4e-06
Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 445 TTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQGFI 504
TT ++G + E L LF+ FG I D K P K C F+KY+ +A I L F
Sbjct: 341 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFP 400
Query: 505 IMGSPIRLSWGR 516
G +R WG+
Sbjct: 401 FQGRNLRTGWGK 412
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 70.9 bits (172), Expect = 5e-12
Identities = 41/98 (41%), Positives = 54/98 (54%), Gaps = 3/98 (3%)
Query: 140 RLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGA 199
++NWA + F++FVGDLSP T+A L F +NS RVM D TG
Sbjct: 131 KVNWAYATGQREDT--SSHFNIFVGDLSPEVTDAALFDSFSA-FNSCSDARVMWDQKTGR 187
Query: 200 SRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYAT 237
SR FGFV F N+ + + A+ EMNG RQ+R +AT
Sbjct: 188 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225
Score = 50.4 bits (119), Expect = 7e-06
Identities = 32/85 (37%), Positives = 42/85 (48%), Gaps = 3/85 (3%)
Query: 434 NNNAMNAGVSSTTVFVGGLNPNINELQLFELFKPF--GTITDVKIPPGKQCGFVKYNERL 491
N +A TTV+VG L+P + +L L LF G I +V++ K GFV+YN
Sbjct: 258 NEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHD 317
Query: 492 EAEAAIN-GLQGFIIMGSPIRLSWG 515
EA AI G + IR SWG
Sbjct: 318 EAALAIQMGNAQPFLFSRQIRCSWG 342
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 69.7 bits (169), Expect = 1e-11
Identities = 65/227 (28%), Positives = 92/227 (39%), Gaps = 53/227 (23%)
Query: 12 LQSSNELPRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNA 71
L + ++ PRTL++G+LD E IA+++ +G K K+I +N
Sbjct: 38 LGNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSN-------------- 83
Query: 72 SSNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALTLNATPIPNISCNTTASKRT 131
DP Y FVEF A QAL T +KR
Sbjct: 84 -------------DP---------YAFVEFSDHGQASQALQ-------------TMNKRL 108
Query: 132 NDDGKRKFRLNWA-NGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVR 190
D R+ ++NWA S I T F +FVGDLS L FQ + V +
Sbjct: 109 LLD--REMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP-FGDVSDAK 165
Query: 191 VMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYAT 237
V+ D T S+ +GFV + E A+ +MNG R +R +AT
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWAT 212
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 69.7 bits (169), Expect = 1e-11
Identities = 42/111 (37%), Positives = 57/111 (50%), Gaps = 3/111 (2%)
Query: 140 RLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGA 199
++NWA + F++FVGDLSP T+A L F ++S RVM D TG
Sbjct: 127 KVNWAYATGQREDT--SSHFNIFVGDLSPEVTDATLYQSFSV-FSSCSDARVMWDQKTGR 183
Query: 200 SRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGN 250
SR FGFV F N+ + + A+ EMNG RQ+R +AT LS +
Sbjct: 184 SRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSD 234
>7291222 [R] KOG0151 Predicted splicing regulator contains RRM SWAP and RPR
domains
Length = 957
Score = 66.6 bits (161), Expect = 9e-11
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKI---------PPGKQCGFVKYNERLEA 493
++T +++G LNP I+E QL E+F +G + +KI G+ CGFV Y R +A
Sbjct: 213 NTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSRKDA 272
Query: 494 EAAINGLQGFIIMGSPIRLSWGR 516
E A+ L G IMG +RL WG+
Sbjct: 273 ERALKTLNGRYIMGYEMRLGWGK 295
>CE06396 [R] KOG0118 FOG: RRM domain
Length = 392
Score = 65.9 bits (159), Expect = 2e-10
Identities = 59/228 (25%), Positives = 97/228 (41%), Gaps = 57/228 (25%)
Query: 14 SSNELPRTLWMGDLDPGFDELIIASIWQSLGKS-VKVKLIKSKTNALVPINSTSIPNNAS 72
S N RTLW+GD+ + E ++ ++ G + KVK + K
Sbjct: 83 SGNNAQRTLWIGDVPTDWTEETLSQVFTECGHAPYKVKRVYVKDEL-------------- 128
Query: 73 SNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQAL-TLNATPIPNISCNTTASKRT 131
GYCF+EF +F++A+Q L LN IP
Sbjct: 129 ---------------------KGYCFIEFITFDEARQTLYDLNGNRIPGFK--------- 158
Query: 132 NDDGKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRV 191
+F L +AN + P EF+L V + +A+L +F KY S + ++
Sbjct: 159 ----DIRFNLCFAN-----DSYNPNSEFNLHVSSVPDDMADAELYRIFD-KYQSCRGAKM 208
Query: 192 MTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPR 239
+ G+S+ GFVRF N+T+++ AL+EM+ + G ++ + A R
Sbjct: 209 FRF-VDGSSKGSGFVRFGNQTDQQMALVEMHRTKVGGCRIILKLAGSR 255
>At1g17370 [R] KOG0118 FOG: RRM domain
Length = 419
Score = 64.7 bits (156), Expect = 3e-10
Identities = 38/98 (38%), Positives = 54/98 (54%), Gaps = 3/98 (3%)
Query: 140 RLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGA 199
++NWA + + F++FVGDLSP T+A L + F Y + RVM D TG
Sbjct: 122 KVNWAYASGQREDT--SSHFNIFVGDLSPEVTDAMLFTCFSV-YPTCSDARVMWDQKTGR 178
Query: 200 SRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYAT 237
SR FGFV F N+ + + A+ E+ G RQ+R +AT
Sbjct: 179 SRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT 216
>CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 85
Score = 62.8 bits (151), Expect = 1e-09
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 159 FSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNAL 218
FS++VG+ +PF T D L + ++ +V VR++ D TG R F FV F E + A+
Sbjct: 4 FSVYVGN-APFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 219 IEMNGVQFQGRQLRVAYATPRNN 241
+ NGV F GR LRV A RNN
Sbjct: 63 DQFNGVDFNGRALRVNLAQNRNN 85
>7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 464
Score = 62.0 bits (149), Expect = 2e-09
Identities = 51/219 (23%), Positives = 88/219 (39%), Gaps = 52/219 (23%)
Query: 19 PRTLWMGDLDPGFDELIIASIWQSLGKSVKVKLIKSKTNALVPINSTSIPNNASSNALEI 78
P+TL++G+LD E ++ +++ ++G K+I+ N
Sbjct: 6 PKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGN--------------------- 44
Query: 79 NGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALTLNATPIPNISCNTTASKRTNDDGKRK 138
DP Y F+E+ +++ A ALT +KR + ++
Sbjct: 45 ------DP---------YAFIEYSNYQAATTALT-------------AMNKRLFLE--KE 74
Query: 139 FRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITG 198
++NWA + +FVGDLSP L F + + R++ DP T
Sbjct: 75 IKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAF-APFGEISNCRIVRDPHTM 133
Query: 199 ASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYAT 237
S+ + FV F + E NA+ MNG R +R ++T
Sbjct: 134 KSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWST 172
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 61.6 bits (148), Expect = 3e-09
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
LFVG LS ++ L F T + V V+ D TG SR FGFV F+ E NA+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAF-TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 221 MNGVQFQGRQLRVAYATPRNNVAQQHLSGNLG 252
M+G + GRQ+RV AT R++ + G G
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSFGGGGG 127
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 61.2 bits (147), Expect = 4e-09
Identities = 50/154 (32%), Positives = 71/154 (45%), Gaps = 20/154 (12%)
Query: 86 PNKTNLHHAGYCFVEFESFEDAQQALTLNATPIPNISCNTTASKRTNDDGKRKFRLNWAN 145
P N GY F+EF SFEDA++AL SCN KR + + L
Sbjct: 515 PQNQNGKSKGYAFIEFASFEDAKEALN---------SCN----KREIEGRAIRLELQGPR 561
Query: 146 GATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGF 205
G+ P +LFV LS TE L F SV+ R++TD TG+S+ FGF
Sbjct: 562 GSP---NARSQPSKTLFVKGLSEDTTEETLKESFD---GSVRA-RIVTDRETGSSKGFGF 614
Query: 206 VRFANETERRNALIEMNGVQFQGRQLRVAYATPR 239
V F +E + + A M + G ++ + +A P+
Sbjct: 615 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
>At3g53460 [R] KOG0118 FOG: RRM domain
Length = 342
Score = 60.5 bits (145), Expect = 6e-09
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 156 TPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERR 215
+P+ LFVG+LS A L LF++ N V+ V V+ D +TG SR FGFV + E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGN-VEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 216 NALIEMNGVQFQGRQLRVAYATP 238
A + NG +F+GR LRV P
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPP 177
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 59.7 bits (143), Expect = 1e-08
Identities = 47/154 (30%), Positives = 79/154 (50%), Gaps = 22/154 (14%)
Query: 95 GYCFVEFESFEDAQQALT------LNATPIPNISCNTTASKRT-NDDGKRKFRLNWANGA 147
GY +V+FE+ A++A+ ++ PI +C+ + SK N+D +KF G
Sbjct: 210 GYGYVDFENKSYAEKAIQEMQGKEIDGRPI---NCDMSTSKPAGNNDRAKKF------GD 260
Query: 148 TLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVR 207
T P +LF+G+LS A + LF K+ V +VR+ T P T + FG+V+
Sbjct: 261 TPSE-----PSDTLFLGNLSFNADRDAIFELF-AKHGEVVSVRIPTHPETEQPKGFGYVQ 314
Query: 208 FANETERRNALIEMNGVQFQGRQLRVAYATPRNN 241
F+N + + AL + G R +R+ +++PR N
Sbjct: 315 FSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPN 348
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 58.9 bits (141), Expect = 2e-08
Identities = 47/161 (29%), Positives = 79/161 (48%), Gaps = 11/161 (6%)
Query: 95 GYCFVEFESFEDAQQALTLNATPIPN---ISCNTTASKRTNDDGKRKFRLNWANGATLHS 151
GY +V+FE+ E A+ A+ N T + ++ + + + N + R A
Sbjct: 305 GYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQR------AGNFG 358
Query: 152 TILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANE 211
L P ++FVG+LS ATE DL + F ++++R+ TDP +G + FG+V F ++
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTF-SD 416
Query: 212 TERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGNLG 252
+ +EMNG GR R+ ++TPR + G G
Sbjct: 417 IDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRGGFG 457
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 58.9 bits (141), Expect = 2e-08
Identities = 50/154 (32%), Positives = 71/154 (45%), Gaps = 23/154 (14%)
Query: 86 PNKTNLHHAGYCFVEFESFEDAQQALTLNATPIPNISCNTTASKRTNDDGKRKFRLNWAN 145
P N GY F+EF SFEDA++AL SCN KR + + L
Sbjct: 515 PQNQNGKSKGYAFIEFASFEDAKEALN---------SCN----KREIEGRAIRLELQGPR 561
Query: 146 GATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGF 205
G+ P +LFV LS TE L F SV+ R++TD TG+S+ FGF
Sbjct: 562 GS---PNARSQPSKTLFVKGLSEDTTEETLKESFD---GSVR-ARIVTDRETGSSKGFGF 614
Query: 206 VRFANETERRNALIEMNGVQFQGRQLRVAYATPR 239
V F +E + + A M + G ++ + +A P+
Sbjct: 615 VDFNSEEDAKEA---MEDGEIDGNKVTLDWAKPK 645
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 58.5 bits (140), Expect = 2e-08
Identities = 31/78 (39%), Positives = 45/78 (56%), Gaps = 1/78 (1%)
Query: 159 FSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNAL 218
FS++VG+ +PF T + L F + + VR++ D TG R F F+ FA E + A+
Sbjct: 5 FSVYVGN-APFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
Query: 219 IEMNGVQFQGRQLRVAYA 236
+MNG +F GR LRV A
Sbjct: 64 EQMNGAEFNGRPLRVNLA 81
>At5g51300 [A] KOG0119 Splicing factor 1/branch point binding protein (RRM
superfamily)
Length = 804
Score = 58.5 bits (140), Expect = 2e-08
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 142 NWANGATLHSTILPTP---------EFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVM 192
N NGA+ H + TP E +L++G L P + L++LF + + + +V+
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSS-FGEIVMAKVI 512
Query: 193 TDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYA 236
D +TG S+ +GFV++A+ A+ MNG +F+GR L V A
Sbjct: 513 KDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>Hs20537092 [R] KOG0151 Predicted splicing regulator contains RRM SWAP and RPR
domains
Length = 1029
Score = 56.6 bits (135), Expect = 9e-08
Identities = 29/83 (34%), Positives = 45/83 (53%), Gaps = 9/83 (10%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKI---------PPGKQCGFVKYNERLEA 493
S+T +++G +NP +NE L + F FG + VKI + CGFV + R +A
Sbjct: 272 STTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDA 331
Query: 494 EAAINGLQGFIIMGSPIRLSWGR 516
E A+ L G +IM ++L WG+
Sbjct: 332 ERALKNLNGKMIMSFEMKLGWGK 354
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 55.8 bits (133), Expect = 2e-07
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 154 LPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETE 213
+ + E LFVG LS E L +F +KY + V V+ D T SR FGFV F N +
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVF-SKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 214 RRNALIEMNGVQFQGRQLRVAYA-TPRNNVAQQHLSGNLG 252
++A++ MNG GRQ+RV A +N ++ + G+ G
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAG 99
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 55.5 bits (132), Expect = 2e-07
Identities = 31/78 (39%), Positives = 45/78 (56%), Gaps = 1/78 (1%)
Query: 159 FSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNAL 218
FS++VG++ TE ++ + F V VR++ D TG R F FV F+ E + A+
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAA-VGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 219 IEMNGVQFQGRQLRVAYA 236
++NGV F GR LRV YA
Sbjct: 65 EQLNGVAFNGRNLRVNYA 82
>At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
Length = 244
Score = 55.5 bits (132), Expect = 2e-07
Identities = 30/76 (39%), Positives = 42/76 (54%), Gaps = 1/76 (1%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
L++G LSP E L F + +N V RVMT+ +TG SR +GFV F +E +A+
Sbjct: 65 LYIGGLSPGTDEHSLKDAFSS-FNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 123
Query: 221 MNGVQFQGRQLRVAYA 236
MNG + G + V A
Sbjct: 124 MNGQELNGFNISVNVA 139
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 55.1 bits (131), Expect = 3e-07
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 95 GYCFVEFESFEDAQQALT-LNATPIPNISCNTT-ASKRTNDDGKRKFRLNWANGATLHST 152
GY FV F + ++A+ A+ +N I + T A+++ +++ + K +T
Sbjct: 69 GYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNST---- 124
Query: 153 ILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANET 212
S++VG++S T+ADL LF T Y + VR+ ++ + FVR+ +
Sbjct: 125 --KADNTSVYVGNISQQTTDADLRDLFST-YGDIAEVRIFK------TQRYAFVRYEKKE 175
Query: 213 ERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGNL 251
A++EMNG + G Q+R ++ + V LS L
Sbjct: 176 CATKAIMEMNGKEMAGNQVRCSWGRTQAVVINNQLSNAL 214
Score = 51.6 bits (122), Expect = 3e-06
Identities = 31/83 (37%), Positives = 44/83 (52%), Gaps = 1/83 (1%)
Query: 159 FSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNAL 218
F +FVGDLS + L S F TK+ V +V+ D T S+ +GFV F N+ NA+
Sbjct: 27 FHVFVGDLSKDVSNELLKSTF-TKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAI 85
Query: 219 IEMNGVQFQGRQLRVAYATPRNN 241
MNG R +R +A +N+
Sbjct: 86 AGMNGKWIGKRAVRTNWAARKNS 108
>At5g06210 [R] KOG0118 FOG: RRM domain
Length = 146
Score = 55.1 bits (131), Expect = 3e-07
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
LF+G LS TE L F +K V +++ D ++ S+ FGFV FA+ E + AL+E
Sbjct: 36 LFIGGLSFCTTEQGLSEAF-SKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 221 MNGVQFQGRQLRVAYATPRNNVAQQHLSGNLG 252
NG Q GR + V YA A+Q L G G
Sbjct: 95 FNGQQLNGRTIFVDYAK-----AKQSLGGGGG 121
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 54.7 bits (130), Expect = 4e-07
Identities = 51/151 (33%), Positives = 71/151 (46%), Gaps = 26/151 (17%)
Query: 95 GYCFVEFESFEDAQQALTLNATPIPNISCNTTASKRTNDDGKRK-----FRLNWANGATL 149
G+ FV FE+ E AQQA+ NT ND RK F+ A L
Sbjct: 139 GFGFVHFETHEAAQQAI------------NTMNGMLLND---RKVFVGHFKSRREREAEL 183
Query: 150 HSTILPTPEFS-LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRF 208
+ L EF+ ++V +L E L LF +++ + +V+VM D +G SRCFGFV F
Sbjct: 184 GARAL---EFTNIYVKNLPVDVDEQGLQDLF-SQFGKMLSVKVMRDN-SGHSRCFGFVNF 238
Query: 209 ANETERRNALIEMNGVQFQGRQLRVAYATPR 239
E + A++ MNG + GR L A R
Sbjct: 239 EKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>At3g11400 [J] KOG0122 Translation initiation factor 3 subunit g (eIF-3g)
Length = 294
Score = 54.7 bits (130), Expect = 4e-07
Identities = 33/82 (40%), Positives = 46/82 (55%), Gaps = 1/82 (1%)
Query: 158 EFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNA 217
E S+ V +LS E DL+ LF + +V V V D TG SR FGFV F + + + A
Sbjct: 212 ENSVRVTNLSEDTREPDLMELFHP-FGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270
Query: 218 LIEMNGVQFQGRQLRVAYATPR 239
+ ++NG + LRV +ATPR
Sbjct: 271 INKLNGYGYDNLILRVEWATPR 292
>SPBC18H10.04c [R] KOG0118 FOG: RRM domain
Length = 388
Score = 54.3 bits (129), Expect = 5e-07
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
Query: 112 TLNATPIP-----NISCNTTASKRTNDDGKRKFRLNWANGATLHSTILPT-PEFSLFVGD 165
T ATP N +T S R+ + +R+ + +G + +P+ P F+ VG+
Sbjct: 43 TYRATPSSADAGYNAPSSTFESVRSPPESRREGGMG--SGYQRDAIPIPSEPPFTAHVGN 100
Query: 166 LSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQ 225
LS TE DL F V ++R++ DP+T SR FG+V F + +A + ++G
Sbjct: 101 LSFDLTENDLGDFFG---EGVTSIRLVIDPLTERSRGFGYVEF-ETADTLSAALALSGED 156
Query: 226 FQGRQLRVAYATPRNNVAQQHLS 248
GR +R+ A PR + A++ S
Sbjct: 157 LMGRPVRITVAEPRRSFAREERS 179
>At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 453
Score = 54.3 bits (129), Expect = 5e-07
Identities = 28/91 (30%), Positives = 48/91 (51%), Gaps = 1/91 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
+LF+ ++ + +L + FQ + V + +V D TG S+CFGF+ + ++ +NA+
Sbjct: 355 NLFIYNIPREFEDQELAATFQP-FGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 413
Query: 220 EMNGVQFQGRQLRVAYATPRNNVAQQHLSGN 250
MNG Q G++L+V QQ S N
Sbjct: 414 TMNGCQLSGKKLKVQLKRDNGQQQQQQQSKN 444
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 54.3 bits (129), Expect = 5e-07
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 73 SNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALTLNATP---IPNISCNTTASK 129
S+ ++ V I NKT G ++EF+ E AL L+ +P + +T A K
Sbjct: 258 SSVGKVRDVRLITCNKTK-RFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEK 316
Query: 130 RTNDDGKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTV 189
RL N A T L+VG L TE L +F+ + + +
Sbjct: 317 N---------RLQ--NAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEP-FGKIDAI 364
Query: 190 RVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPR 239
+++ D TG S+ +GF+ + N + + AL ++NG + GR ++V T R
Sbjct: 365 QLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTER 414
>Hs9558733 [R] KOG0118 FOG: RRM domain
Length = 282
Score = 53.9 bits (128), Expect = 6e-07
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 155 PTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETER 214
P P L V LS + TE DL +F ++Y + V V+ D TG SR F FV F +
Sbjct: 115 PDPNTCLGVFGLSLYTTERDLREVF-SRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDS 173
Query: 215 RNALIEMNGVQFQGRQLRVAYA 236
+ A+ NG++ GR++RV Y+
Sbjct: 174 KEAMERANGMELDGRRIRVDYS 195
>At2g18510 [A] KOG0131 Splicing factor 3b subunit 4
Length = 363
Score = 53.9 bits (128), Expect = 6e-07
Identities = 48/164 (29%), Positives = 69/164 (41%), Gaps = 32/164 (19%)
Query: 89 TNLHHAGYCFVEFESFEDAQQA------LTLNATPIPNISCNTTASKRTNDDGKRKFRLN 142
TNLH Y F+E+ S EDA A + L+ PI R N + K L+
Sbjct: 62 TNLHQ-NYGFIEYRSEEDADYAIKVLNMIKLHGKPI-----------RVNKASQDKKSLD 109
Query: 143 WANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRC 202
GA +LF+G+L P E L F ++M DP TG SR
Sbjct: 110 --VGA------------NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRG 155
Query: 203 FGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQH 246
FGF+ + + A+ M G RQ+ V+YA ++ ++H
Sbjct: 156 FGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERH 199
>At3g26420 [R] KOG0118 FOG: RRM domain
Length = 245
Score = 53.5 bits (127), Expect = 8e-07
Identities = 30/97 (30%), Positives = 48/97 (48%), Gaps = 1/97 (1%)
Query: 157 PEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRN 216
PE+ F+G L+ ++ L F+ KY + +V+ D +G SR FGF+ F +
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFE-KYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 217 ALIEMNGVQFQGRQLRVAYATPRNNVAQQHLSGNLGQ 253
A+ MNG+ GR + V A P A + G+ G+
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGR 100
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 53.5 bits (127), Expect = 8e-07
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 112 TLNATPIPNISCNTTASKRTNDDGKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFAT 171
T NA + + N AS N++ N A ++ P P+ +L V L +
Sbjct: 64 TTNAA-VGQATANNAASNNNNNNNNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMS 122
Query: 172 EADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQL 231
+ ++ SLF + V++ +++ D +TG S +GFV + + + A+ +NG++ Q + +
Sbjct: 123 QDEIRSLF-VSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTI 181
Query: 232 RVAYATP 238
+V+ A P
Sbjct: 182 KVSIARP 188
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 53.1 bits (126), Expect = 1e-06
Identities = 33/81 (40%), Positives = 44/81 (53%), Gaps = 1/81 (1%)
Query: 158 EFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNA 217
+ LFVG+L A L LF++ N V+ V V+ D ITG SR FGFV ++ +E A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGN-VEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 218 LIEMNGVQFQGRQLRVAYATP 238
+ NG + GR LRV P
Sbjct: 149 AQQFNGYELDGRPLRVNAGPP 169
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 52.8 bits (125), Expect = 1e-06
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
+FVG +S E L F +KY V +++ D TG SR F FV F + E NA+ +
Sbjct: 36 IFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 221 MNGVQFQGRQLRVAYATPRNN 241
++G GR++RV YAT R +
Sbjct: 94 LDGQDLHGRRIRVNYATERGS 114
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 52.4 bits (124), Expect = 2e-06
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
SL+VGDLSP TE DL+ F V +V + + +TG S C+ ++ F + NA+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNV-PVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 220 EMNGVQFQGRQLRVAYA 236
+N +G+ +R+ ++
Sbjct: 81 RLNHSDLKGKAMRIMWS 97
>At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 292
Score = 52.4 bits (124), Expect = 2e-06
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 132 NDDGKRKFRLNWANGATLHSTILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRV 191
+D+G R+ L +G S + P +LFVG LS TE D L +KY +K +R+
Sbjct: 34 HDNGVRRALLYDPSG---DSKAVGDPYCTLFVGRLSHHTTE-DTLREVMSKYGRIKNLRL 89
Query: 192 MTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAY 235
+ +TGASR +GFV + E E A + + GR++ V Y
Sbjct: 90 VRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDY 133
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 52.4 bits (124), Expect = 2e-06
Identities = 52/183 (28%), Positives = 77/183 (41%), Gaps = 32/183 (17%)
Query: 66 SIPNNASSNALEINGVSFIDP-------NKTNLHHAGYCFVEFESFEDAQQALTLNATPI 118
++P N S L F +P N+ G+ FV + ED
Sbjct: 91 NLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVED------------ 138
Query: 119 PNISCNTTASKRTNDDGK----RKFRLNWANGATLHSTIL-PTPEFSLFVGDLSPFATEA 173
CN N DG R ++N+A+ + L P E LFVG+LS T
Sbjct: 139 ----CNIIID---NLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSE 191
Query: 174 DLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRV 233
L F+ + V RV+ D TG SR +GFV ++++ E AL ++G + +GR +RV
Sbjct: 192 SLAGAFR-ECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
Query: 234 AYA 236
A
Sbjct: 251 NLA 253
>Hs14731277 [R] KOG0118 FOG: RRM domain
Length = 295
Score = 52.0 bits (123), Expect = 2e-06
Identities = 38/127 (29%), Positives = 67/127 (51%), Gaps = 8/127 (6%)
Query: 125 TTASKRT-NDDGKRKFRLNWANGATLHSTILPTPEF---SLFVGDLSPFATEADLLSLFQ 180
+TA+ T N R+ ++ AT ILP + ++FVG + E ++ S F
Sbjct: 2 STANPETPNSTISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFF- 60
Query: 181 TKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRN 240
+Y SVK V+++TD TG S+ +GFV F N+ + + I + + F G++L++ A +
Sbjct: 61 ARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQK--IVESQINFHGKKLKLGPAIRKQ 117
Query: 241 NVAQQHL 247
N+ H+
Sbjct: 118 NLCAYHV 124
>CE28070 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 420
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/82 (31%), Positives = 43/82 (51%), Gaps = 1/82 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
+LF+ L ++DL++ F + + + +V D +T S+CFGFV + N NA+
Sbjct: 336 NLFIYHLPQDFGDSDLINTF-APFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 394
Query: 220 EMNGVQFQGRQLRVAYATPRNN 241
MNG Q ++L+V R N
Sbjct: 395 AMNGFQIGSKRLKVQLKVDRGN 416
>CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 584
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/82 (31%), Positives = 43/82 (51%), Gaps = 1/82 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
+LF+ L ++DL++ F + + + +V D +T S+CFGFV + N NA+
Sbjct: 500 NLFIYHLPQDFGDSDLINTF-APFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 558
Query: 220 EMNGVQFQGRQLRVAYATPRNN 241
MNG Q ++L+V R N
Sbjct: 559 AMNGFQIGSKRLKVQLKVDRGN 580
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 51.6 bits (122), Expect = 3e-06
Identities = 34/101 (33%), Positives = 56/101 (54%), Gaps = 3/101 (2%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
SL+VGDL P +EA L +F + SV ++RV D IT S + +V F + R A+
Sbjct: 39 SLYVGDLEPSVSEAHLYDIF-SPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 220 EMNGVQFQGRQLRVAYATPRNNVAQQHLSGNLG-QQLHSNI 259
++N +GR R+ + + R+ ++ SGN+ + LH +I
Sbjct: 98 QLNYTPIKGRLCRIMW-SQRDPSLRKKGSGNIFIKNLHPDI 137
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 51.6 bits (122), Expect = 3e-06
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 156 TPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERR 215
+P LF+G LS E L F + + V VR+ D +G SR FGFV FA E +
Sbjct: 38 SPSSKLFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 216 NALIEMNGVQFQGRQLRVAYATPR 239
+A M+G GR LR+++A R
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALER 120
>At1g07360 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 481
Score = 51.6 bits (122), Expect = 3e-06
Identities = 29/75 (38%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQG 502
S T++VGGLN I E + + F G I ++I K C FV Y R AE A L
Sbjct: 226 SIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSN 285
Query: 503 -FIIMGSPIRLSWGR 516
+I G ++L+WGR
Sbjct: 286 RLVINGQRLKLTWGR 300
>SPAC328.05 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 51.2 bits (121), Expect = 4e-06
Identities = 28/76 (36%), Positives = 49/76 (63%), Gaps = 2/76 (2%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
++VG+L ++ +LL LF T SV R+ +P TG S+ FG V+F NE + +++ +
Sbjct: 282 IYVGNLPWATSDRNLLDLF-TDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEK 339
Query: 221 MNGVQFQGRQLRVAYA 236
+NG ++ GR L+++YA
Sbjct: 340 LNGYRYGGRPLQLSYA 355
>At5g25060 [R] KOG0151 Predicted splicing regulator contains RRM SWAP and RPR
domains
Length = 944
Score = 51.2 bits (121), Expect = 4e-06
Identities = 26/82 (31%), Positives = 43/82 (51%), Gaps = 9/82 (10%)
Query: 444 STTVFVGGLNPNINELQLFELFKPFGTITDVKIP---------PGKQCGFVKYNERLEAE 494
+T ++VG L+P ++E L F FG I VKI + CGFV + R + +
Sbjct: 176 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 235
Query: 495 AAINGLQGFIIMGSPIRLSWGR 516
AA + +QG I+ +++ WG+
Sbjct: 236 AAKDEMQGIIVYEYELKIGWGK 257
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 51.2 bits (121), Expect = 4e-06
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 158 EFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNA 217
E+ FVG L+ + DL F +++ V +++ D +G SR FGFV F +E R+A
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 218 LIEMNGVQFQGRQLRVAYATPRNN 241
+ EMNG + GR + V A R +
Sbjct: 64 IEEMNGKELDGRVITVNEAQSRGS 87
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 50.8 bits (120), Expect = 5e-06
Identities = 30/80 (37%), Positives = 48/80 (59%), Gaps = 1/80 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
+LFV +L+ F T+ D L+ F + +K V+T+P TG +R +GFV F+ + + A
Sbjct: 6 TLFVRNLA-FQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 220 EMNGVQFQGRQLRVAYATPR 239
E+ + GR LR+ +ATPR
Sbjct: 65 ELKNKKLHGRILRLDFATPR 84
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 50.8 bits (120), Expect = 5e-06
Identities = 39/146 (26%), Positives = 63/146 (42%), Gaps = 12/146 (8%)
Query: 95 GYCFVEFESFEDAQQALTLNATPIPNISCNTTASK-RTNDDGKRKFRLNWANGATLHSTI 153
G +VEF + A+ L + + AS+ N L NG +
Sbjct: 174 GIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR--- 230
Query: 154 LPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETE 213
L+VG L TE L +F+ + + + +M D TG S+ +GF+ F++
Sbjct: 231 -------LYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 282
Query: 214 RRNALIEMNGVQFQGRQLRVAYATPR 239
R AL ++NG + GR +RV + T R
Sbjct: 283 ARRALEQLNGFELAGRPMRVGHVTER 308
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 50.8 bits (120), Expect = 5e-06
Identities = 25/83 (30%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
L+VG L TE L +F+ + ++++++M D TG S+ +GF+ F++ + AL +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 221 MNGVQFQGRQLRVAYATPRNNVA 243
+NG + GR ++V + T R + +
Sbjct: 311 LNGFELAGRPMKVGHVTERTDAS 333
>Hs4503259 [R] KOG0118 FOG: RRM domain
Length = 295
Score = 50.8 bits (120), Expect = 5e-06
Identities = 33/107 (30%), Positives = 59/107 (54%), Gaps = 7/107 (6%)
Query: 144 ANGATLHSTILPTPEF---SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGAS 200
++ AT ILP + ++FVG + E ++ S F +Y SVK V+++TD TG S
Sbjct: 22 SSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFF-ARYGSVKEVKIITDR-TGVS 79
Query: 201 RCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPRNNVAQQHL 247
+ +GFV F N+ + + I + + F G++L++ A + N+ H+
Sbjct: 80 KGYGFVSFFNDVDVQK--IVESQINFHGKKLKLGPAIRKQNLCAYHV 124
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 50.8 bits (120), Expect = 5e-06
Identities = 39/146 (26%), Positives = 63/146 (42%), Gaps = 12/146 (8%)
Query: 95 GYCFVEFESFEDAQQALTLNATPIPNISCNTTASK-RTNDDGKRKFRLNWANGATLHSTI 153
G +VEF + A+ L + + AS+ N L NG +
Sbjct: 192 GIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR--- 248
Query: 154 LPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETE 213
L+VG L TE L +F+ + + + +M D TG S+ +GF+ F++
Sbjct: 249 -------LYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 300
Query: 214 RRNALIEMNGVQFQGRQLRVAYATPR 239
R AL ++NG + GR +RV + T R
Sbjct: 301 ARRALEQLNGFELAGRPMRVGHVTER 326
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 50.8 bits (120), Expect = 5e-06
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
+L + L T+ ++ SLF T +++ +++ D +TG S +GFV + E + A+
Sbjct: 43 NLIINYLPQGMTQEEVRSLF-TSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 220 EMNGVQFQGRQLRVAYATPRNN 241
NG++ Q + ++V+YA P N+
Sbjct: 102 SFNGLRLQNKTIKVSYARPSND 123
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 50.8 bits (120), Expect = 5e-06
Identities = 28/81 (34%), Positives = 47/81 (57%), Gaps = 1/81 (1%)
Query: 159 FSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNAL 218
F ++VG+L P+ ++ L +++ V RV++D TG SR FGFV+ +NE E A+
Sbjct: 207 FRIYVGNL-PWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Query: 219 IEMNGVQFQGRQLRVAYATPR 239
++G +GR ++V A R
Sbjct: 266 AALDGQNLEGRAIKVNVAEER 286
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 50.4 bits (119), Expect = 7e-06
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
LF+G ++ E L F TKY V RV+ D TG SR FGFV F + +A+
Sbjct: 42 LFIGGMAYSMDEDSLREAF-TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 221 MNGVQFQGRQLRVAYATPRNN 241
++G GR ++V YA R +
Sbjct: 101 LDGRDLHGRVVKVNYANDRTS 121
>At5g04280 [R] KOG0118 FOG: RRM domain
Length = 310
Score = 50.4 bits (119), Expect = 7e-06
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
+FVG LSP T+ DL F +++ + ++M + TG SR FGF+ FA+ ++ E
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 221 MNGVQFQGRQLRVAYATPR 239
M+G F R + V A P+
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>At4g13850 [R] KOG0118 FOG: RRM domain
Length = 158
Score = 50.4 bits (119), Expect = 7e-06
Identities = 32/89 (35%), Positives = 45/89 (49%), Gaps = 1/89 (1%)
Query: 161 LFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIE 220
LF+G LS +A L F + V +V+ D TG SR FGFV F +E A+ E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 221 MNGVQFQGRQLRVAYATPRNNVAQQHLSG 249
M+G + GR +RV A R + + + G
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPRAYGGG 124
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 50.4 bits (119), Expect = 7e-06
Identities = 29/77 (37%), Positives = 42/77 (53%), Gaps = 1/77 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
SL+VGDL T++ L F T+ V +VRV D T S +G+V +A + AL
Sbjct: 46 SLYVGDLDATVTDSQLFEAF-TQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 220 EMNGVQFQGRQLRVAYA 236
E+N + GR +RV Y+
Sbjct: 105 ELNFMALNGRAIRVMYS 121
>Hs4759098 [R] KOG0118 FOG: RRM domain
Length = 288
Score = 50.1 bits (118), Expect = 9e-06
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 155 PTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETER 214
P P L V LS + TE DL +F +KY + V ++ D + SR F FV F N +
Sbjct: 114 PDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 172
Query: 215 RNALIEMNGVQFQGRQLRVAYA 236
+ A NG++ GR++RV ++
Sbjct: 173 KEAKERANGMELDGRRIRVDFS 194
>CE18507 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 459
Score = 50.1 bits (118), Expect = 9e-06
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 152 TILPTPEFSLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANE 211
T+L +LF+ L +A+L+ +F + + + +V D T S+CFGFV + N
Sbjct: 367 TVLGPDGCNLFIYHLPQEFGDAELIQMF-APFGHIVSAKVFVDRATNQSKCFGFVSYDNI 425
Query: 212 TERRNALIEMNGVQFQGRQLRVAYATPRN 240
+ A+ MNG Q ++L+V PRN
Sbjct: 426 HSSQAAITAMNGFQIGMKRLKVQLKRPRN 454
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 50.1 bits (118), Expect = 9e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
SL+VGDL T++ L F + +V TVRV D +T S +G+V F N + A+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFG-QMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 220 EMNGVQFQGRQLRVAYA 236
E+N + G+ +RV Y+
Sbjct: 96 ELNYIPLYGKPIRVMYS 112
>At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 492
Score = 50.1 bits (118), Expect = 9e-06
Identities = 26/82 (31%), Positives = 46/82 (55%), Gaps = 1/82 (1%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
+LF+ ++ + +L + FQ+ + V + +V D TG S+CFGFV + ++ +NA+
Sbjct: 350 NLFIYNIPREFGDQELAAAFQS-FGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408
Query: 220 EMNGVQFQGRQLRVAYATPRNN 241
MNG G++L+V NN
Sbjct: 409 MMNGRHLGGKKLKVQLKRDSNN 430
>At2g29580 [R] KOG0153 Predicted RNA-binding protein (RRM superfamily)
Length = 483
Score = 50.1 bits (118), Expect = 9e-06
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 443 SSTTVFVGGLNPNINELQLFELFKPFGTITDVKIPPGKQCGFVKYNERLEAEAAINGLQG 502
S T++VGGLN + E + + F G I ++I K C FV Y R AE A L
Sbjct: 226 SIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSN 285
Query: 503 -FIIMGSPIRLSWGR 516
++ G ++L+WGR
Sbjct: 286 RLVVNGQRLKLTWGR 300
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 50.1 bits (118), Expect = 9e-06
Identities = 30/92 (32%), Positives = 52/92 (55%), Gaps = 2/92 (2%)
Query: 160 SLFVGDLSPFATEADLLSLFQTKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALI 219
SL+VGDL T++ L F T+ V +VRV D T S +G+V ++N + A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYF-TEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 220 EMNGVQFQGRQLRVAYATPRNNVAQQHLSGNL 251
++N G+ +R+ Y++ R++ A++ GNL
Sbjct: 106 KLNYSYLNGKMIRITYSS-RDSSARRSGVGNL 136
>7296727 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 50.1 bits (118), Expect = 9e-06
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 13/179 (7%)
Query: 64 STSIPNNASSNALEINGVSFIDPNKTNLHHAGYCFVEFESFEDAQQALTLNATPIPNISC 123
S +P A++ +++IN VSF K + ++ + + A S
Sbjct: 109 SVHVPTVAAAPSIDINAVSFDVTQKLK---------KLKAEKSGPNPIAEEAIKAARASS 159
Query: 124 NTTASKRTNDDGKRKFRLNWANGATLHSTIL---PTPEFSLFVGDLSPFATEADLLSLFQ 180
+ + T K + + A G T L P +F +F GDL + L F
Sbjct: 160 ALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRIFCGDLGNDVNDEVLTRTFN 219
Query: 181 TKYNSVKTVRVMTDPITGASRCFGFVRFANETERRNALIEMNGVQFQGRQLRVAYATPR 239
K+ S + RV+ D TG S+ FGFV F + A+ EM+G R +++ +T R
Sbjct: 220 -KFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGSRPIKLRKSTWR 277
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,865,907
Number of Sequences: 60738
Number of extensions: 936735
Number of successful extensions: 4589
Number of sequences better than 1.0e-05: 82
Number of HSP's better than 0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 4207
Number of HSP's gapped (non-prelim): 315
length of query: 540
length of database: 30,389,216
effective HSP length: 111
effective length of query: 429
effective length of database: 23,647,298
effective search space: 10144690842
effective search space used: 10144690842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)