ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1468 good KL KOG4086 Replication, recombination and repair Transcriptional regulator SOH1 r_klactIII1468 good KL KOG4086 Transcription Transcriptional regulator SOH1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII1468 517720 517349 -124 
         (124 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL127c [KL] KOG4086 Transcriptional regulator SOH1                   172   9e-44
SPCP31B10.03c [KL] KOG4086 Transcriptional regulator SOH1              71   2e-13
ECU11g0360 [KL] KOG4086 Transcriptional regulator SOH1                 69   1e-12
At5g19910 [KL] KOG4086 Transcriptional regulator SOH1                  69   1e-12
7296835 [KL] KOG4086 Transcriptional regulator SOH1                    67   3e-12
CE09877 [KL] KOG4086 Transcriptional regulator SOH1                    67   5e-12
Hs7705592 [KL] KOG4086 Transcriptional regulator SOH1                  66   7e-12

>YGL127c [KL] KOG4086 Transcriptional regulator SOH1
          Length = 127

 Score =  172 bits (435), Expect = 9e-44
 Identities = 76/111 (68%), Positives = 91/111 (81%)

Query: 12  EEGELPTRFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIV 71
           ++  LPTRFE+ELEF+QSLANI YVTYLLTQ Q+W+ P FK YLKYLEYW  P Y+QCIV
Sbjct: 15  DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIV 74

Query: 72  YPNSLFVLKLLNTLFEGSTVNENGVLEGCEHVPRILQTQGTQWMNEMVERW 122
           YPN LF+LKLLN   E + VNE+G+LEG + +P+I+Q QG QWMNEMVERW
Sbjct: 75  YPNCLFILKLLNGFMESAIVNEDGLLEGLDELPKIIQLQGPQWMNEMVERW 125


>SPCP31B10.03c [KL] KOG4086 Transcriptional regulator SOH1
          Length = 139

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 18 TRFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLF 77
          +RFEIELEFVQ L+N P+    L Q + ++D  F +YL+Y+EYW EPEY + I+YP  L 
Sbjct: 15 SRFEIELEFVQMLSN-PWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFIIYPTCLH 73

Query: 78 VLKLL 82
          +L LL
Sbjct: 74 MLTLL 78


>ECU11g0360 [KL] KOG4086 Transcriptional regulator SOH1
          Length = 103

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 40/107 (37%), Positives = 60/107 (55%), Gaps = 7/107 (6%)

Query: 18  TRFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLF 77
           +RFE ELEFVQ L N  Y+ +L T+   ++  +F+ YL+YLEYW  PEY++ + YP  L 
Sbjct: 4   SRFERELEFVQLLCNPDYLRWL-TREGHFESEEFRSYLRYLEYWRSPEYSRFLTYPQCLA 62

Query: 78  VLKLLNTLFEGSTVNENGVLEGCEHVPRILQTQGTQWMNEMVERWRE 124
           VL+ LN      + N N +L        + + Q   W+N+  E W +
Sbjct: 63  VLEHLN------SENINDMLSDENFFLALGEQQYFIWLNKHKEGWNK 103


>At5g19910 [KL] KOG4086 Transcriptional regulator SOH1
          Length = 230

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 33/64 (51%), Positives = 45/64 (69%), Gaps = 1/64 (1%)

Query: 19 RFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLFV 78
          RF +ELEF+Q LAN  Y+ YL  Q + ++D  F  YLKYL+YW  PEY + I+YP+ L+ 
Sbjct: 31 RFLLELEFIQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYF 89

Query: 79 LKLL 82
          L+LL
Sbjct: 90 LELL 93


>7296835 [KL] KOG4086 Transcriptional regulator SOH1
          Length = 204

 Score = 67.4 bits (163), Expect = 3e-12
 Identities = 36/73 (49%), Positives = 49/73 (66%), Gaps = 2/73 (2%)

Query: 11 IEEGELPTR-FEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQC 69
          IE  EL  R ++IELEFVQ L+N  Y+ +L  Q   ++D  F  YLKYL+YW EP+YA+ 
Sbjct: 12 IESEELQKRRWQIELEFVQCLSNPNYLNFL-AQRGFFKDQSFINYLKYLQYWKEPDYAKY 70

Query: 70 IVYPNSLFVLKLL 82
          ++YP  L+ L LL
Sbjct: 71 LMYPMCLYFLDLL 83


>CE09877 [KL] KOG4086 Transcriptional regulator SOH1
          Length = 163

 Score = 66.6 bits (161), Expect = 5e-12
 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 18 TRFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLF 77
          TRFE+E EFVQ+LAN  Y+ +L  Q   +++  F  YLKYL YW +P+YA+C+ +P  L 
Sbjct: 9  TRFEVECEFVQALANPNYLNFL-AQRGYFKEEYFVNYLKYLLYWKDPQYARCLKFPQCLH 67

Query: 78 VLKLLNT 84
          +L+ L +
Sbjct: 68 MLEALQS 74


>Hs7705592 [KL] KOG4086 Transcriptional regulator SOH1
          Length = 131

 Score = 66.2 bits (160), Expect = 7e-12
 Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 19 RFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLFV 78
          RF++ELEFVQ LAN  Y+ +L  Q   ++D  F  YLKYL YW +PEYA+ + YP  L +
Sbjct: 17 RFQLELEFVQCLANPNYLNFL-AQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKYPQCLHM 75

Query: 79 LKLL 82
          L+LL
Sbjct: 76 LELL 79


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,666,586
Number of Sequences: 60738
Number of extensions: 298428
Number of successful extensions: 652
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 10
length of query: 124
length of database: 30,389,216
effective HSP length: 100
effective length of query: 24
effective length of database: 24,315,416
effective search space: 583569984
effective search space used: 583569984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)