ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1595 good T KOG3886 Signal transduction mechanisms GTP-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1595 564482 563586 -299
(299 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YML121w [T] KOG3886 GTP-binding protein 436 e-122
Hs8051629 [T] KOG3886 GTP-binding protein 261 7e-70
Hs5729999 [T] KOG3886 GTP-binding protein 261 9e-70
7299113 [T] KOG3886 GTP-binding protein 251 7e-67
SPBC337.13c [T] KOG3886 GTP-binding protein 249 4e-66
Hs8051627 [T] KOG3886 GTP-binding protein 246 2e-65
CE02361 [T] KOG3886 GTP-binding protein 233 3e-61
CE28471 [T] KOG3886 GTP-binding protein 85 1e-16
YGR163w [U] KOG3887 Predicted small GTPase involved in nuclear p... 64 2e-10
Hs11995472 [U] KOG3887 Predicted small GTPase involved in nuclea... 59 6e-09
Hs11034847 [U] KOG3887 Predicted small GTPase involved in nuclea... 55 2e-07
SPCC777.05 [U] KOG3887 Predicted small GTPase involved in nuclea... 53 6e-07
>YML121w [T] KOG3886 GTP-binding protein
Length = 310
Score = 436 bits (1121), Expect = e-122
Identities = 217/310 (70%), Positives = 252/310 (81%), Gaps = 11/310 (3%)
Query: 1 MSSNNRXXXXXXXXXXXXXXXXXXIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLW 60
MSSNNR IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLW
Sbjct: 1 MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLW 60
Query: 61 DCGGQDVFMENYFTQQKDHIFQMVQVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAK 120
DCGGQDVFMENYFT+QKDHIFQMVQVLIHVFDVES +VLKD++IF +ALKQL+KYSPDAK
Sbjct: 61 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 120
Query: 121 IFVLVHKMDLVQLDKRTELFDIMMRKLKQASAEYGFNDLVGFPTSIWDESLYKAWSQIVC 180
IFVL+HKMDLVQLDKR ELF IMM+ L + S+E+GF +L+GFPTSIWDESLYKAWSQIVC
Sbjct: 121 IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVC 180
Query: 181 SLIPNMNTYNNNLKRLKELMDAKEIVLFEKTTFLVISSSNTASGE-----------LLDP 229
SLIPNM+ + +NLK+ KE+M+A EI+LFE+TTFLVI SSN + LLDP
Sbjct: 181 SLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDP 240
Query: 230 KRFEKISNIMKNFKHSTTKLKSSFNTLVLSDLIYVTELSTNMMCFIVLNNNTYPKEFVLQ 289
KRFEKISNIMKNFK S TKLKS F TL+L++ IYV+ELS+NM+CFIVL + P+E VL+
Sbjct: 241 KRFEKISNIMKNFKQSCTKLKSGFKTLILNNNIYVSELSSNMVCFIVLKDMNIPQELVLE 300
Query: 290 NLHQAQTYFQ 299
N+ +A+ +FQ
Sbjct: 301 NIKKAKEFFQ 310
>Hs8051629 [T] KOG3886 GTP-binding protein
Length = 346
Score = 261 bits (668), Expect = 7e-70
Identities = 139/278 (50%), Positives = 190/278 (68%), Gaps = 8/278 (2%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMV 84
IIF+NY A DTRRLGATIDVEHSH+RFLGN+ LNLWDCGGQD FMENYFT Q+D+IF+ V
Sbjct: 59 IIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNV 118
Query: 85 QVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIMM 144
+VLI+VFDVES+++ KD+ + L+ + + SPDAKIF LVHKMDLVQ D+R +F
Sbjct: 119 EVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKERE 178
Query: 145 RKLKQASAEYGFNDLVGFPTSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRLKELMDAKE 204
L++ S + F TSIWDE+LYKAWS IV LIPN+ NL+ E+++A E
Sbjct: 179 EDLRRLSRPL---ECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADE 235
Query: 205 IVLFEKTTFLVISSSNTASGELLDPKRFEKISNIMKNFKHSTTKLKSSFNTLVLSD---L 261
++LFE+ TFLVI S+ E D RFEKISNI+K FK S +KL +SF ++ + +
Sbjct: 236 VLLFERATFLVI--SHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFA 293
Query: 262 IYVTELSTNMMCFIVLNNNTYPKEFVLQNLHQAQTYFQ 299
++ ++N +V+++ + P L N+ A+ +F+
Sbjct: 294 AFIDIFTSNTYVMVVVSDPSIPSAATLINIRNARKHFE 331
>Hs5729999 [T] KOG3886 GTP-binding protein
Length = 313
Score = 261 bits (667), Expect = 9e-70
Identities = 138/278 (49%), Positives = 190/278 (67%), Gaps = 8/278 (2%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMV 84
IIF+NY A DTRRLGATIDVEHSH+RFLGN+ LNLWDCGGQD FMENYFT Q+D+IF+ V
Sbjct: 26 IIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNV 85
Query: 85 QVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIMM 144
+VLI+VFDVES+++ KD+ + L+ + + SPDAKIF LVHKMDLVQ D+R +F
Sbjct: 86 EVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKERE 145
Query: 145 RKLKQASAEYGFNDLVGFPTSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRLKELMDAKE 204
L++ S + F TSIWDE+LYKAWS IV LIPN+ NL+ ++++A E
Sbjct: 146 EDLRRLSRPL---ECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADE 202
Query: 205 IVLFEKTTFLVISSSNTASGELLDPKRFEKISNIMKNFKHSTTKLKSSFNTLVLSD---L 261
++LFE+ TFLVI S+ E D RFEKISNI+K FK S +KL +SF ++ + +
Sbjct: 203 VLLFERATFLVI--SHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFA 260
Query: 262 IYVTELSTNMMCFIVLNNNTYPKEFVLQNLHQAQTYFQ 299
++ ++N +V+++ + P L N+ A+ +F+
Sbjct: 261 AFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFE 298
>7299113 [T] KOG3886 GTP-binding protein
Length = 311
Score = 251 bits (642), Expect = 7e-67
Identities = 132/278 (47%), Positives = 184/278 (65%), Gaps = 8/278 (2%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMV 84
IIF+NY A DT RLGATIDVEHSH+RFLGN+ LNLWDCGGQ+ FM+ YF QQ+D+IF+ V
Sbjct: 21 IIFANYIARDTTRLGATIDVEHSHVRFLGNLVLNLWDCGGQEGFMKQYFAQQRDNIFRNV 80
Query: 85 QVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIMM 144
+VLI+VFDVES+++ +D+ + L+ L + SP+AKIF LVHKMDLV R +F M
Sbjct: 81 EVLIYVFDVESQEIERDIHYYQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERM 140
Query: 145 RKLKQASAEYGFNDLVGFPTSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRLKELMDAKE 204
L + S ++ F TSIWDE+LYKAWS IV LIPN+ N++ +++A E
Sbjct: 141 EDLIKLSKP---GNVTCFRTSIWDETLYKAWSSIVTMLIPNVAALENSVTHFGNVIEADE 197
Query: 205 IVLFEKTTFLVISSSNTASGELLDPKRFEKISNIMKNFKHSTTKLKSSFNTLVLSD---L 261
++LFEK TFLVIS + D RFEK+SNI+K FK S +KL + F ++ + +
Sbjct: 198 VLLFEKATFLVISHCQSKKNR--DSHRFEKVSNIIKQFKLSCSKLGAKFQSMEVRNSAFA 255
Query: 262 IYVTELSTNMMCFIVLNNNTYPKEFVLQNLHQAQTYFQ 299
++ ++N +V+++ T P E L N+ A+ YF+
Sbjct: 256 AFIDTFTSNTYVMVVMSDPTLPSEATLVNIRNARKYFE 293
>SPBC337.13c [T] KOG3886 GTP-binding protein
Length = 308
Score = 249 bits (635), Expect = 4e-66
Identities = 129/278 (46%), Positives = 181/278 (64%), Gaps = 6/278 (2%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMV 84
I+FSNY A DTRRLGATID+EHSH+RFLGN+ LNLWDCGGQ+ FMENY + Q+DHIF+ V
Sbjct: 21 IVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEAFMENYLSAQRDHIFRNV 80
Query: 85 QVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIMM 144
QVLI+VFDVES++ +D+ F L+ SP A++F L+HKMDLVQ D R +F+
Sbjct: 81 QVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRDLVFEERK 140
Query: 145 RKLKQASAEYGFNDLVGFPTSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRLKELMDAKE 204
L + S + + TSIWDE+L+KAWS IV +LIPN T ++L+ + +A E
Sbjct: 141 AILLETSKDL---ETTCLATSIWDETLFKAWSAIVYTLIPNTPTLESHLREFAKAAEAAE 197
Query: 205 IVLFEKTTFLVISSSNTASGELLDPKRFEKISNIMKNFKHSTTKLKSSFNTLVL---SDL 261
++LFE+TTFLVISS ++ S D RFEKISNI+K FK S +K+++ F T L +
Sbjct: 198 VILFERTTFLVISSYSSESNPATDAHRFEKISNIVKQFKLSCSKMQAQFTTFELRGGNFS 257
Query: 262 IYVTELSTNMMCFIVLNNNTYPKEFVLQNLHQAQTYFQ 299
++ + + +V+ + L N+ A+ + +
Sbjct: 258 AFIVPYTEDTYILVVIADPEIESAVTLMNIQSARRFIE 295
>Hs8051627 [T] KOG3886 GTP-binding protein
Length = 374
Score = 246 bits (629), Expect = 2e-65
Identities = 139/306 (45%), Positives = 190/306 (61%), Gaps = 36/306 (11%)
Query: 25 IIFSNYSAFDTRRLGATI----------------------------DVEHSHLRFLGNMT 56
IIF+NY A DTRRLGATI DVEHSH+RFLGN+
Sbjct: 59 IIFANYIARDTRRLGATILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLV 118
Query: 57 LNLWDCGGQDVFMENYFTQQKDHIFQMVQVLIHVFDVESKDVLKDVDIFTRALKQLKKYS 116
LNLWDCGGQD FMENYFT Q+D+IF+ V+VLI+VFDVES+++ KD+ + L+ + + S
Sbjct: 119 LNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNS 178
Query: 117 PDAKIFVLVHKMDLVQLDKRTELFDIMMRKLKQASAEYGFNDLVGFPTSIWDESLYKAWS 176
PDAKIF LVHKMDLVQ D+R +F L++ S + F TSIWDE+LYKAWS
Sbjct: 179 PDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPL---ECSCFRTSIWDETLYKAWS 235
Query: 177 QIVCSLIPNMNTYNNNLKRLKELMDAKEIVLFEKTTFLVISSSNTASGELLDPKRFEKIS 236
IV LIPN+ NL+ E+++A E++LFE+ TFLVI S+ E D RFEKIS
Sbjct: 236 SIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVI--SHYQCKEQRDAHRFEKIS 293
Query: 237 NIMKNFKHSTTKLKSSFNTLVLSD---LIYVTELSTNMMCFIVLNNNTYPKEFVLQNLHQ 293
NI+K FK S +KL +SF ++ + + ++ ++N +V+++ + P L N+
Sbjct: 294 NIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVVSDPSIPSAATLINIRN 353
Query: 294 AQTYFQ 299
A+ +F+
Sbjct: 354 ARKHFE 359
>CE02361 [T] KOG3886 GTP-binding protein
Length = 312
Score = 233 bits (594), Expect = 3e-61
Identities = 124/286 (43%), Positives = 182/286 (63%), Gaps = 13/286 (4%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMV 84
IIF+NY A D RLG TI+VEH+H++FLGNM L+LWDCGGQ+ FMEN+ QKD IF+ V
Sbjct: 23 IIFANYIARDCSRLGPTIEVEHAHVKFLGNMVLHLWDCGGQESFMENFLVSQKDQIFKNV 82
Query: 85 QVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELF---D 141
QVLI+VFDVES++ KD+ + L+ L + SP+A++F L+HKMDL++ DKR E F +
Sbjct: 83 QVLIYVFDVESREFEKDLRYYQSCLEALLQNSPNAQVFCLIHKMDLIEEDKREETFKRRE 142
Query: 142 IMMRKLKQASAEYGFNDLVG-----FPTSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRL 196
+ + + +A N+ F +SIWDE+LYKAWS IV L+PN+ T + LK+
Sbjct: 143 ADVLRYSELAATPLQNERTNAVCQCFKSSIWDETLYKAWSAIVYHLVPNVGTMEDKLKKF 202
Query: 197 KELMDAKEIVLFEKTTFLVISSSNTASGELLDPKRFEKISNIMKNFKHSTTKLKSSFNTL 256
++DA E++LFE+ TFLVI ++ E DP RFEK+SNI+K FK S TK+ S +++
Sbjct: 203 GAILDADEVILFERATFLVI--AHAVLREHKDPHRFEKVSNIIKQFKLSCTKMGSKLDSI 260
Query: 257 VLSD---LIYVTELSTNMMCFIVLNNNTYPKEFVLQNLHQAQTYFQ 299
+ + ++ + N IV+ + + N+ A+ F+
Sbjct: 261 QVRNSQFSAFIDSFTQNTYVMIVIPDGNASAPMITMNVKNARKVFE 306
>CE28471 [T] KOG3886 GTP-binding protein
Length = 556
Score = 85.1 bits (209), Expect = 1e-16
Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 29/287 (10%)
Query: 27 FSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMVQV 86
F + FD L T D+ HS LR+ G + L + D GG +EN + F V
Sbjct: 283 FHDRRQFDN--LAPTGDITHSSLRYAG-IYLKMQDYGGTKEEIENQLRDETT-TFSNVDA 338
Query: 87 LIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIMMRK 146
++ FD D+ D D + +ALK L K+SP+AKIF+ + K DL+ +D+ D ++ +
Sbjct: 339 MLFFFDASVDDMSADFDHYQKALKLLLKHSPEAKIFIFLTKTDLLSVDE-----DKVITQ 393
Query: 147 LKQASAE------------YGFNDLVGF-PTSIWDESLYKAWSQIVCSLIPNMNTYNNNL 193
LK E N + + PT+++D + +KAWS + + + + L
Sbjct: 394 LKYVKTEVIKCNRTIMCCQIALNFKMKYLPTTVYDHTFFKAWSIVFQNTFKEPSHWKEKL 453
Query: 194 KRLKELMDAKEIVLFEKTTFLVISSSNTASGELLDPKRFEKISNIMKNFKHSTTKLKSSF 253
+ + E M+ + IVL + + +L+I++ ++D I + + T
Sbjct: 454 RAMGESMNMERIVLVQYSNYLIIANLQIGQMGMVDD------PEIGTKYLYPVTTDNDDV 507
Query: 254 NTLVLSD-LIYVTELSTNMMCFIVLNNNTYPKEFVLQNLHQAQTYFQ 299
+ + D +IY + N+M V +++ + + + YF+
Sbjct: 508 DAEQMFDRIIYFKRFTENLMLLCVAKDDSLAWCDMRNQMRAHKRYFE 554
>YGR163w [U] KOG3887 Predicted small GTPase involved in nuclear protein
import
Length = 341
Score = 64.3 bits (155), Expect = 2e-10
Identities = 50/198 (25%), Positives = 99/198 (49%), Gaps = 7/198 (3%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMV 84
++F N DT L +T + H L + L + + GQ + E + ++ +F+ V
Sbjct: 28 VVFHNMQPLDTLYLESTSNPSLEHFSTL--IDLAVMELPGQLNYFEPSYDSER--LFKSV 83
Query: 85 QVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIMM 144
L++V D + + + + ++ K +P I VL+HK+D + D + + +M
Sbjct: 84 GALVYVIDSQD-EYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIM 142
Query: 145 RKLKQASAEYGFNDL-VGFP-TSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRLKELMDA 202
++ + E G + + V F TSI+D S+Y+A+S+IV LIP ++ N L L +
Sbjct: 143 QRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKI 202
Query: 203 KEIVLFEKTTFLVISSSN 220
++ LF+ + + +S+ +
Sbjct: 203 EKAFLFDVNSKIYVSTDS 220
>Hs11995472 [U] KOG3887 Predicted small GTPase involved in nuclear protein
import
Length = 399
Score = 59.3 bits (142), Expect = 6e-09
Identities = 47/199 (23%), Positives = 92/199 (45%), Gaps = 5/199 (2%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMV 84
++F S +T L +T + + + +WD GQ F + F + IF+
Sbjct: 80 VVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM--IFRGT 137
Query: 85 QVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIMM 144
LI+V D + D ++ + + + K +PD V +HK+D + D + E +
Sbjct: 138 GALIYVIDAQD-DYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIH 196
Query: 145 RKLKQASAEYGFNDL--VGFPTSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRLKELMDA 202
++ A+ G L + TSI+D S+++A+S++V LIP + T N L
Sbjct: 197 QRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGI 256
Query: 203 KEIVLFEKTTFLVISSSNT 221
++ LF+ + + I++ ++
Sbjct: 257 EKAFLFDVVSKIYIATDSS 275
>Hs11034847 [U] KOG3887 Predicted small GTPase involved in nuclear protein
import
Length = 400
Score = 54.7 bits (130), Expect = 2e-07
Identities = 47/199 (23%), Positives = 90/199 (44%), Gaps = 5/199 (2%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTQQKDHIFQMV 84
++F S +T L +T + + + +WD GQ F + F + IF+
Sbjct: 81 VVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEM--IFRGT 138
Query: 85 QVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIMM 144
LI V D + D ++ + + + K + D V +HK+D + D + E +
Sbjct: 139 GALIFVIDSQD-DYMEALARLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIH 197
Query: 145 RKLKQASAEYGFND--LVGFPTSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRLKELMDA 202
++ A+ G L + TSI+D S+++A+S++V LIP + T N L
Sbjct: 198 QRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGI 257
Query: 203 KEIVLFEKTTFLVISSSNT 221
++ LF+ + + I++ +T
Sbjct: 258 EKAFLFDVVSKIYIATDST 276
>SPCC777.05 [U] KOG3887 Predicted small GTPase involved in nuclear protein
import
Length = 314
Score = 52.8 bits (125), Expect = 6e-07
Identities = 55/260 (21%), Positives = 122/260 (46%), Gaps = 19/260 (7%)
Query: 25 IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ-DVFMENYFTQQKDHIFQM 83
++F +T L +T + H+ + ++WD GQ DVF + + IF
Sbjct: 22 VVFYKMPPNETLFLESTSKLTQDHISSF--IDFSVWDFPGQVDVFDAAF---DFESIFTQ 76
Query: 84 VQVLIHVFDVESKDVLKDVDIFTRALKQLKKYSPDAKIFVLVHKMDLVQLDKRTELFDIM 143
V LI V D + D L + + ++ +P+ I V +HK+D + + + + +
Sbjct: 77 VGALIFVIDAQD-DYLDALARLHVTVARVVTINPNICIEVFIHKVDGLSDEFKIDTQRDI 135
Query: 144 MRKLKQASAEYGFNDL-VGFP-TSIWDESLYKAWSQIVCSLIPNMNTYNNNLKRLKELMD 201
++ + A+ G ++ + F TSI+D S+++A+S+++ LIP + T N L
Sbjct: 136 QQRTQDELADIGLENVPISFHLTSIFDHSIFEAFSRVIQKLIPQLPTLENLLNIFCSNSL 195
Query: 202 AKEIVLFEKTTFLVISSSNTASGELLDPKRFEKISNIMK------NFKHSTTKLKSSFNT 255
++ LF+ + + +++ ++ +D + +E S+ + + +++LK +
Sbjct: 196 VEKAYLFDVLSKIYVATDSSP----VDVQSYEICSDFIDVILDIGSIYGRSSQLKPGHSP 251
Query: 256 LVLSDLIYVTELSTNMMCFI 275
+L + V LS +++ F+
Sbjct: 252 EILDETSSVIRLSNDLVLFL 271
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,904,830
Number of Sequences: 60738
Number of extensions: 627947
Number of successful extensions: 1977
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1953
Number of HSP's gapped (non-prelim): 13
length of query: 299
length of database: 30,389,216
effective HSP length: 106
effective length of query: 193
effective length of database: 23,950,988
effective search space: 4622540684
effective search space used: 4622540684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)