ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII1676.1  suspect: Pn  R     KOG0619   General function prediction only                               FOG: Leucine rich repeat

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII1676.1 596456  596677 74   
         (74 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45770 [R] KOG0619 FOG: Leucine rich repeat                         28   2.3  
YHR023w [Z] KOG0161 Myosin class II heavy chain                        27   6.6  
ECU10g1120 [K] KOG2549 Transcription initiation factor TFIID sub...    27   6.6  
CE12998 [T] KOG3575 FOG: Hormone receptors                             27   6.6  
At1g52960 [D] KOG0987 DNA helicase PIF1/RRM3                           26   8.6  
7296451 [D] KOG0600 Cdc2-related protein kinase                        26   8.6  

>At5g45770 [R] KOG0619 FOG: Leucine rich repeat
          Length = 425

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 15/48 (31%), Positives = 24/48 (49%)

Query: 8   PSQRTSGLQLQNEVLVSGSNKKPTVKVTFKDKTELEADPSSMNFMELG 55
           PSQ+   L  +N+  V G N++ T  +  K++ E E   S+     LG
Sbjct: 355 PSQKEESLSGENDYDVEGGNEEKTENLKTKEEEEEEHKGSNKTLFGLG 402


>YHR023w [Z] KOG0161 Myosin class II heavy chain
          Length = 1928

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 15/45 (33%), Positives = 28/45 (61%), Gaps = 3/45 (6%)

Query: 9    SQRTSGLQLQNEVLVSGS--NKKPTVKVTFKDKT-ELEADPSSMN 50
            +Q+T  LQ+ N  L S +  NK+ T K+ + ++T +L+ + +S N
Sbjct: 1692 NQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRN 1736


>ECU10g1120 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
           (also component of histone acetyltransferase SAGA)
          Length = 356

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 13/42 (30%), Positives = 22/42 (51%)

Query: 19  NEVLVSGSNKKPTVKVTFKDKTELEADPSSMNFMELGNYFDR 60
           N +L+     K     T++++ EL++    M   ELG YFD+
Sbjct: 134 NPILLEKPVAKKDTLGTYQEEAELKSQNKHMLTKELGMYFDK 175


>CE12998 [T] KOG3575 FOG: Hormone receptors
          Length = 383

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 18/71 (25%), Positives = 30/71 (41%), Gaps = 6/71 (8%)

Query: 1   MFLSAIPPSQRTSGLQLQN------EVLVSGSNKKPTVKVTFKDKTELEADPSSMNFMEL 54
           M L A  PSQ  + + + N       +L  G+      K+T  +K  L   PS   FM++
Sbjct: 96  MILFANKPSQTRNFIDVSNLVARGLSILKHGAQSPLNQKLTSLEKMALAGSPSMKKFMKV 155

Query: 55  GNYFDRHSRKL 65
                ++  K+
Sbjct: 156 NEVTSKYVAKV 166


>At1g52960 [D] KOG0987 DNA helicase PIF1/RRM3
          Length = 996

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 3/41 (7%)

Query: 27  NKKP---TVKVTFKDKTELEADPSSMNFMELGNYFDRHSRK 64
           NKKP   T++   K   +   DP+ + F E+ N+F  +S++
Sbjct: 304 NKKPPSRTIRANAKKLPKAAPDPTKLLFEEIPNHFTWNSKE 344


>7296451 [D] KOG0600 Cdc2-related protein kinase
          Length = 1157

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 21/66 (31%), Positives = 30/66 (44%), Gaps = 2/66 (3%)

Query: 9   SQRTSGLQLQNEVLVSGSNKKPTVKVTFKDKTELEADPSSMNFMELGNYFDRHSRKLALK 68
           S+R S     +E   S S    +  +  K +  ++    +  F EL    DRH R+ ALK
Sbjct: 513 SRRRSPSSASSESSASRSRSPTSRDLKHKREEYIKKISETSLFAELVK--DRHKRQKALK 570

Query: 69  ESIESQ 74
           E IE Q
Sbjct: 571 EIIERQ 576


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.310    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,070,866
Number of Sequences: 60738
Number of extensions: 128247
Number of successful extensions: 304
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 6
length of query: 74
length of database: 30,389,216
effective HSP length: 50
effective length of query: 24
effective length of database: 27,352,316
effective search space: 656455584
effective search space used: 656455584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)