ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1742 suspect: LH R KOG1931 General function prediction only Putative transmembrane protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1742 617725 620922 1066
(1066 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR218c [R] KOG1931 Putative transmembrane protein 402 e-111
SPCC285.14 [R] KOG1931 Putative transmembrane protein 52 6e-06
>YMR218c [R] KOG1931 Putative transmembrane protein
Length = 1102
Score = 402 bits (1032), Expect = e-111
Identities = 286/1111 (25%), Positives = 534/1111 (47%), Gaps = 75/1111 (6%)
Query: 13 VQVSYFDPFHVFDGLRNEIEQRLPLTNLHWKSKGGALKTISSLNVKFISSTGEENSDDLV 72
V VSYFDPF +F+ LR E +Q LPL N+HWK+ G ++T++ L ++ I E
Sbjct: 10 VPVSYFDPFDLFESLRPEFQQILPLDNIHWKAFDGTVRTVNRLPIELIPEGRGEADKSND 69
Query: 73 LKPFINCVVISCESVEEYRSKIRPLIKNWLP-------SQGD-LYCANIVVLHSNKEVLD 124
+PFI ++++C S+++YR+K+RPL++ WLP S G+ + I++L++N EV+D
Sbjct: 70 EQPFIRFLIVNCISIDQYRAKVRPLVRQWLPNLESVSSSTGEKMIYKPIILLYANSEVVD 129
Query: 125 SNIFKSVSLIEKFNKDFPSLKTLETKTVYRSNDERETFWNGLINKLKHYLLEVFENRIES 184
SN+FKSVSL+EKF KDFP ++TLE ++VYRS ER+ FWN K+K +L +F+ R+
Sbjct: 130 SNLFKSVSLMEKFGKDFPHVQTLEVRSVYRSPKERQEFWNQFSQKIKASVLSIFQKRLTH 189
Query: 185 YSSA---LQREISPSKAVVLHENSLKMYLSFQLIEEASTEISRL-DELLNNHETFLLIAG 240
+ LQ+ + + ++ E ++Y+ F ++E+AS E+ ++ E+L + + G
Sbjct: 190 LQHSLANLQKGNNFEEQLLTREKLYELYVVFNILEDASLELQKIKKEILRRNMN--MPDG 247
Query: 241 DLRTPLFNQEEFAINSISTLISKDKITYFGVQKCILQAELELYMVSSNANNSERKLNAAF 300
L+ P F + S+ ++I + + F + K L L + +
Sbjct: 248 KLQVP-FESSSKSDESLGSIIIEGTLDKFQLHKYFFIRRLRLLKLEDQTLTAFVGAFQLI 306
Query: 301 HKFLSRLHVSFHSDKRWLQFKYSAYDEFINLTTFDDIKSDTWKLVLCDMKNE----QREC 356
F+ + + + R L+FK+ ++ F+++ + +LC++K E +R+
Sbjct: 307 KNFIESISIEYRKSVRLLEFKHYFITSMLSYFEFENVSNP----LLCEIKAELLMLKRDN 362
Query: 357 WIQLACSRMGYKIPLKDFRKEVTPEVNPSMEESFRTLGVFYENIIQKTKDLLKEYSSFTS 416
W+Q + GY++ K++ ++E+F VF EN + TK++L ++
Sbjct: 363 WVQGVMATSGYRLMDKNYPNSDVKYKFDLLKETFVDETVFQENFLTLTKEILSLFNKCEG 422
Query: 417 KRQRVMDWLSIEIAFLYFEQGDYSNCMLILQSSYDFYMESGWSVIGSWLLEYYIECIKNC 476
KRQR++D LSIEI LY++ Y + + S Y++Y ++ W+ IG +L+ +I+ + +C
Sbjct: 423 KRQRIVDILSIEIGLLYYQGKKYEEAVSLFLSCYEYYTQTNWNSIGLKILQVFIDSLSHC 482
Query: 477 PNITEIDVDGDLVPKSIVXXXXXXXXXXXXXXXPRK--WWXXXXXXXXXXXXXXXYPLDN 534
P + + +DG+ V S V K WW YPLD
Sbjct: 483 PKLDVLQIDGESVSASAVLTNAFLNILKLCKDNDSKEIWWKKFMDLQMKNNIHLMYPLDG 542
Query: 535 LFLVEITRKVFPVKPNSYGIDISFSKNFKLDDINISSITLLMKNYEDEFLPFKIADVILN 594
LF V + KV + N I+++ +DI+ ++ L +KN + + F +D +L
Sbjct: 543 LFEVTLNSKVHLARANVSAIEVNLKSYGFPEDISTKTMRLSLKNMGGDVIVFGASDFLLK 602
Query: 595 NDNCIYTLISNSVLWSTFELVALEVVIGSTVFKKEFDSFETEDSLKLQP---CQSFDAFK 651
L +++ F L++ E+++ F KEF E +D + P C+ ++ K
Sbjct: 603 KGENKLILECRDIMYGEFSLLSFEIIVEGITFVKEFP--ENQDEFIVVPEIYCK--ESTK 658
Query: 652 VTIEKSIEHICGKTYLRLKFENKEDIDEFTFSIHSTDQDDICFEGNDSSVTVA------- 704
V ++++ G+ L LK + ++ + Q +I GN ++ V+
Sbjct: 659 VLVKQAHNLNLGEYALELKSVQSDALESLQVEVEV--QKNI---GNMKNLPVSFSMDEIQ 713
Query: 705 SFGTFRVPFERKSA------LTTSFFIKTVLSFSKGNEQ--YIEKSVHEIDYNLPLDVSV 756
+ + PFE T+F + SF+K N+Q + E I L L VSV
Sbjct: 714 ARKRYNTPFENVRLEYYLLDQITAFDLIIKTSFTKKNDQGTFGETKKVRIQCYLQLSVSV 773
Query: 757 DDVYLNDRLVFDFSL-KSFANEAILIFGTGLETENTET-YSISEAESFAEPVLMNPAVKT 814
+D++ D F F L S E ++++ + L +T Y+I P L+
Sbjct: 774 EDIFKKDIFFFKFLLNSSVREEPVILYSSELSAPDTRNDYNIRGDYIATTPALITFDGNE 833
Query: 815 PYHVYFQILNKQGLFSPVDKFRFSVKYLRVQQYFGELVQK--IIPPKEQNIVDYNYWQNY 872
+ ++I F D F V+Y +++ + +I + + + W+ +
Sbjct: 834 SFINCYEITANNN-FDSKDIFNLKVRYNTLKEQLDCFITDAVLIEGDVEWFILFEKWKTF 892
Query: 873 ----IVPNLKLSDKAFESSRKVAIILEEPNILESLELIGSSAF------KVQXXXXXXXX 922
I+ LK AF+ +R + ++ ++ ++ I + K+
Sbjct: 893 WELEILKKLKYDYDAFKENRIIRLLKTSIDLNKTKSKIRNLCIEKAVLDKILICLNKVSR 952
Query: 923 XXGIPIDELPQFKTASMLHELVLPVNIPTLSLFYSVHFRQIDTNKE------LKAGVPSS 976
+ ++ ++ + +L +PV +P F+ V F Q++T+ + G S
Sbjct: 953 GIAVCNTDMDEYVRNLVPKQLTVPVQLPGFEQFFHVQFEQMETSHDALHDTIATIGNSLS 1012
Query: 977 FKIEITNLSGTWDLQESQENA-ILTIANNSDWIIGGKRRFELDTKRIDATVNLIPLRRGY 1035
+ + + NLSG W + I I ++++W+I G++R + KR + V+LIPL++GY
Sbjct: 1013 YTVIVENLSGQWGQDVIDDGGYIFEILSSNEWLIHGQKRCAIKEKRKEFEVHLIPLKKGY 1072
Query: 1036 LNYPSIELTGLNGERTGQMDYLASNDKLLIF 1066
LN+P +E+T +NG ++ ++D+ + + +LIF
Sbjct: 1073 LNFPRVEITNING-KSCRVDHSNAFESILIF 1102
>SPCC285.14 [R] KOG1931 Putative transmembrane protein
Length = 1150
Score = 51.6 bits (122), Expect = 6e-06
Identities = 29/94 (30%), Positives = 52/94 (54%), Gaps = 7/94 (7%)
Query: 15 VSYFDPFHVFDGLRNEIEQRLPLTNLHW-KSKGGALKTISSLNVKFISSTGEENSDD--- 70
V Y+DPF ++ + +IE ++PL NL W +S TI+SL+++F+ E +S D
Sbjct: 8 VQYYDPFDLWPSIATDIESKIPLRNLQWVESYQYKKHTITSLDLEFLPWLEEFSSQDTSK 67
Query: 71 ---LVLKPFINCVVISCESVEEYRSKIRPLIKNW 101
L+ P +N + + + E Y+++ +PL W
Sbjct: 68 DPTLLNIPLVNMLFLPEQDGEIYKTQHKPLATKW 101
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,091,687
Number of Sequences: 60738
Number of extensions: 2652828
Number of successful extensions: 6697
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6686
Number of HSP's gapped (non-prelim): 3
length of query: 1066
length of database: 30,389,216
effective HSP length: 117
effective length of query: 949
effective length of database: 23,282,870
effective search space: 22095443630
effective search space used: 22095443630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)