ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII1754  suspect: LH   A     KOG0106  RNA processing and modification                                Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII1754 624694  625584 297  
         (297 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61860 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7...    52   1e-06

>At3g61860 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
          superfamily)
          Length = 271

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 7  VHVSGFPAGTRANELAPQFENVGRLVRIDIPPLGRFKSIPYAFVEYESSHDAENAIRSCD 66
          V V  F   TR ++L   F+  GR+ R+D+          YAFV +E   DAE+AIR  D
Sbjct: 4  VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-------GYAFVYFEDERDAEDAIRKLD 56

Query: 67 GTPFEMNKSFSLRVQFARSKPRRDFGDSRDP 97
            PF   K   L V++A+ +  R  GD++ P
Sbjct: 57 NFPFGYEKR-RLSVEWAKGERGRPRGDAKAP 86


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,344,254
Number of Sequences: 60738
Number of extensions: 580117
Number of successful extensions: 1694
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1693
Number of HSP's gapped (non-prelim): 1
length of query: 297
length of database: 30,389,216
effective HSP length: 106
effective length of query: 191
effective length of database: 23,950,988
effective search space: 4574638708
effective search space used: 4574638708
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)