ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1888 good C KOG2536 Energy production and conversion MAM33, mitochondrial matrix glycoprotein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1888 674925 674149 -259
(259 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL070c [C] KOG2536 MAM33 mitochondrial matrix glycoprotein 208 7e-54
At5g02050 [C] KOG2536 MAM33 mitochondrial matrix glycoprotein 65 1e-10
SPBC776.07 [C] KOG2536 MAM33 mitochondrial matrix glycoprotein 56 4e-08
>YIL070c [C] KOG2536 MAM33 mitochondrial matrix glycoprotein
Length = 266
Score = 208 bits (529), Expect = 7e-54
Identities = 121/239 (50%), Positives = 145/239 (60%), Gaps = 15/239 (6%)
Query: 31 TFITSSRQLSYTATTFNQHTTKVAQVLNSEVELETSQQIVDLPEELAT-----FLSKYGF 85
T S R + A NQ T +V +L SE+++E LPE + FL+KY F
Sbjct: 31 TVANSKRCFTPAAIMRNQETQRVGDILQSELKIEKET----LPESTSLDSFNDFLNKYKF 86
Query: 86 EPVVQEGRNLAHI-RRQLNDETINVFFDVAQVANLP----VXXXXXXXXXXXXXXDFDSM 140
V G+N A I RR + ET++VFFDVAQ+ANLP + DFD++
Sbjct: 87 SLVETPGKNEAEIVRRTESGETVHVFFDVAQIANLPYNNAMDENTEQNEDGINEDDFDAL 146
Query: 141 SDNFANVNIVVVKNS-DNTAISFELLMNMQEGSFYVDSVTPYESAEDALNESAEAEIKRE 199
SDNFANVN+V+ K S A+SFELLMN+QEGSFYVDS TPY S + ALN+SAEAEI RE
Sbjct: 147 SDNFANVNVVISKESASEPAVSFELLMNLQEGSFYVDSATPYPSVDAALNQSAEAEITRE 206
Query: 200 LGYHGPPFSNXXXXXXXXXXXXXXXRGITTDLTSFISNYSEFKENNEYIQWLSKMKKFF 258
L YHGPPFSN RG+ +L SFIS YSEFKENNEYI WL KMKKFF
Sbjct: 207 LVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 265
>At5g02050 [C] KOG2536 MAM33 mitochondrial matrix glycoprotein
Length = 267
Score = 64.7 bits (156), Expect = 1e-10
Identities = 56/240 (23%), Positives = 96/240 (39%), Gaps = 18/240 (7%)
Query: 21 QVARNVIARPTFITSSRQLSYTATTFNQHTTKVAQVLNSEVELETSQQIVDLPEELATFL 80
Q+ R ++ + + S + + + TT +++ + V+ SE+E +++ + L
Sbjct: 44 QIRRGSVSSFSVSSFSTESAISKTTADEN---LVSVIESEIECAVAEEAPHDTDFLEDKP 100
Query: 81 SKYGFEPVVQEGRNLAHIRRQLNDETINVFFDVAQVANLPVXXXXXXXXXXXXXXDFDSM 140
+ FE + G + R+ DETI V +V VA+ D D
Sbjct: 101 EGFPFEIIDNSGERTVLLTRKFEDETIQV--EVDSVASYDDEDEEEEAEPNNEEDDEDQE 158
Query: 141 SDNFANVNIVV-VKNSDNTAISFELLMNMQEGSFYVDSVTPYESAEDALNESAEAEIKRE 199
S V +VV V+ D + F + S P E D+L+ +
Sbjct: 159 SSGKVRVPMVVSVQKGDGVCLEFGV------------SAYPDEIVIDSLSIKQPQGSDND 206
Query: 200 LGYHGPPFSNXXXXXXXXXXXXXXXRGITTDLTSFISNYSEFKENNEYIQWLSKMKKFFE 259
L Y GP F + RGI T+F+++Y K++ EY+QWL +K F E
Sbjct: 207 LAYEGPDFDDLDENLQKAFHRYLEIRGIKPSFTTFLADYVANKDSREYLQWLKDLKSFVE 266
>SPBC776.07 [C] KOG2536 MAM33 mitochondrial matrix glycoprotein
Length = 269
Score = 56.2 bits (134), Expect = 4e-08
Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 21/240 (8%)
Query: 30 PTFITSSRQLSYTATTFNQHTTKVAQVLNSEVELETSQQIVDLPEELATFLSKYGFEPVV 89
P +S R+ S+TA +K+ L+SE++ E +Q + E++ Y E V
Sbjct: 41 PFSFSSIRRSSHTA---GNPRSKLINALSSEIDYEKNQVL----SEISLPPVNYDIEDV- 92
Query: 90 QEGRNLAHIRRQLNDETINVFFDVAQVANLPV---XXXXXXXXXXXXXXDFDSMSDNFAN 146
+G + ++ + DE I + +V+Q V +S D F N
Sbjct: 93 -QGSAVVVLKAKHGDENIRITMNVSQDVTDAVPEEQDFTEFEDEQELQNQGESAEDEFPN 151
Query: 147 VNI-------VVVKNSDNTAISFELLMNMQEGSFYVDSVTPYESAEDALNESAEAEIKRE 199
++ + + N A+ FE + F ++++ + + ++S EAE KR
Sbjct: 152 EDLGRFQPCTIEISKPGNGALVFEA--TALDDGFDIENIYFSKDIDMLTSDSLEAEWKRR 209
Query: 200 LGYHGPPFSNXXXXXXXXXXXXXXXRGITTDLTSFISNYSEFKENNEYIQWLSKMKKFFE 259
Y GP F R I L+SFI ++ KE EYI WL +++F +
Sbjct: 210 KQYLGPSFKELDPELQDLFHSYLEERKIDESLSSFIVSFGLTKELKEYINWLESVRQFLK 269
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.130 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,550,548
Number of Sequences: 60738
Number of extensions: 374222
Number of successful extensions: 1128
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 3
length of query: 259
length of database: 30,389,216
effective HSP length: 104
effective length of query: 155
effective length of database: 24,072,464
effective search space: 3731231920
effective search space used: 3731231920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)