ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1907.1 good J KOG3424 Translation, ribosomal structure and biogenesis 40S ribosomal protein S24
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1907.1 681322 680966 -119
(119 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL069c [J] KOG3424 40S ribosomal protein S24 190 2e-49
YER074w [J] KOG3424 40S ribosomal protein S24 190 2e-49
SPBC17G9.07 [J] KOG3424 40S ribosomal protein S24 127 2e-30
SPAC17G6.06 [J] KOG3424 40S ribosomal protein S24 125 7e-30
At3g04920 [J] KOG3424 40S ribosomal protein S24 117 3e-27
At5g28060 [J] KOG3424 40S ribosomal protein S24 115 1e-26
Hs4506703 [J] KOG3424 40S ribosomal protein S24 108 9e-25
Hs14916501 [J] KOG3424 40S ribosomal protein S24 108 9e-25
CE29465 [J] KOG3424 40S ribosomal protein S24 108 9e-25
7291445 [J] KOG3424 40S ribosomal protein S24 106 6e-24
Hs18545227 [J] KOG3424 40S ribosomal protein S24 63 7e-11
Hs22060114 [J] KOG3424 40S ribosomal protein S24 59 8e-10
Hs20553180 [J] KOG3424 40S ribosomal protein S24 59 8e-10
Hs20537556_1 [J] KOG3424 40S ribosomal protein S24 59 1e-09
ECU10g1570i [J] KOG3424 40S ribosomal protein S24 55 1e-08
Hs20471333_2 [J] KOG3424 40S ribosomal protein S24 44 5e-05
SPAC4A8.10 [R] KOG4372 Predicted alpha/beta hydrolase 28 2.0
SPCC622.12c [E] KOG2250 Glutamate/leucine/phenylalanine/valine d... 27 3.5
At1g61310 [T] KOG4658 Apoptotic ATPase 27 3.5
Hs16507208 [K] KOG2746 HMG-box transcription factor Capicua and ... 27 6.0
At1g61300 [T] KOG4658 Apoptotic ATPase 27 6.0
At1g61180 [T] KOG4658 Apoptotic ATPase 26 7.8
>YIL069c [J] KOG3424 40S ribosomal protein S24
Length = 135
Score = 190 bits (483), Expect = 2e-49
Identities = 97/119 (81%), Positives = 101/119 (84%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+LARKQFVVDVLHPNRANVSKDELREKLAE YKAEKDAVSVFGFRTQ+GGGKS GFGLVY
Sbjct: 17 LLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVY 76
Query: 61 NSVADAKKFEPAYRLVRYGLAEKVEKASXXXXXXXXXXXXXIFGTGKSIAKKAARRNAD 119
NSVA+AKKFEP YRLVRYGLAEKVEKAS IFGTGK +AKK ARRNAD
Sbjct: 77 NSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD 135
>YER074w [J] KOG3424 40S ribosomal protein S24
Length = 135
Score = 190 bits (483), Expect = 2e-49
Identities = 97/119 (81%), Positives = 101/119 (84%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+LARKQFVVDVLHPNRANVSKDELREKLAE YKAEKDAVSVFGFRTQ+GGGKS GFGLVY
Sbjct: 17 LLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVY 76
Query: 61 NSVADAKKFEPAYRLVRYGLAEKVEKASXXXXXXXXXXXXXIFGTGKSIAKKAARRNAD 119
NSVA+AKKFEP YRLVRYGLAEKVEKAS IFGTGK +AKK ARRNAD
Sbjct: 77 NSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRNAD 135
>SPBC17G9.07 [J] KOG3424 40S ribosomal protein S24
Length = 134
Score = 127 bits (319), Expect = 2e-30
Identities = 58/116 (50%), Positives = 80/116 (68%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+L RKQ VVD+LHP +AN+SK+E+REKLA+ YK + + V FG RT +GGG+STGF L+Y
Sbjct: 17 LLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRSTGFALIY 76
Query: 61 NSVADAKKFEPAYRLVRYGLAEKVEKASXXXXXXXXXXXXXIFGTGKSIAKKAARR 116
+S KKFEP YRLVR G AE ++K + +FGTGK +AK+ +++
Sbjct: 77 DSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRKSKQ 132
>SPAC17G6.06 [J] KOG3424 40S ribosomal protein S24
Length = 134
Score = 125 bits (315), Expect = 7e-30
Identities = 58/116 (50%), Positives = 79/116 (68%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+L RKQ VVD+LHP +AN+SK++LREKL + YK + AV FG RT YGGG++TGF L+Y
Sbjct: 17 LLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRTTGFALIY 76
Query: 61 NSVADAKKFEPAYRLVRYGLAEKVEKASXXXXXXXXXXXXXIFGTGKSIAKKAARR 116
+ V KKFEP YRLVR G AE ++K + +FGTGK +AK+ +++
Sbjct: 77 DDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRKSKQ 132
>At3g04920 [J] KOG3424 40S ribosomal protein S24
Length = 133
Score = 117 bits (292), Expect = 3e-27
Identities = 56/88 (63%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKA-EKDAVSVFGFRTQYGGGKSTGFGLV 59
+L+RKQFV+DVLHP RANVSK EL+EKLA Y+ + +A+ VF FRT +GGGKS+GFGL+
Sbjct: 18 LLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLI 77
Query: 60 YNSVADAKKFEPAYRLVRYGLAEKVEKA 87
Y++V AKKFEP YRL+R GL K+EK+
Sbjct: 78 YDTVESAKKFEPKYRLIRNGLDTKIEKS 105
>At5g28060 [J] KOG3424 40S ribosomal protein S24
Length = 133
Score = 115 bits (288), Expect = 1e-26
Identities = 55/88 (62%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKA-EKDAVSVFGFRTQYGGGKSTGFGLV 59
+LARKQFV+DVLHP RANVSK EL+EKLA Y+ + +A+ F FRT +GGGKS+G+GL+
Sbjct: 18 LLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLI 77
Query: 60 YNSVADAKKFEPAYRLVRYGLAEKVEKA 87
Y++V +AKKFEP YRL+R GL K+EK+
Sbjct: 78 YDTVENAKKFEPKYRLIRNGLDTKIEKS 105
>Hs4506703 [J] KOG3424 40S ribosomal protein S24
Length = 133
Score = 108 bits (271), Expect = 9e-25
Identities = 55/108 (50%), Positives = 72/108 (65%), Gaps = 1/108 (0%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+L RKQ V+DVLHP +A V K E+REKLA+ YK D + VFGFRT +GGGK+TGFG++Y
Sbjct: 17 LLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIY 76
Query: 61 NSVADAKKFEPAYRLVRYGLAEKVEKASXXXXXXXXXXXXXIFGTGKS 108
+S+ AKK EP +RL R+GL EK +K S + GT K+
Sbjct: 77 DSLDYAKKNEPKHRLARHGLYEK-KKTSRKQRKERKNRMKKVRGTAKA 123
>Hs14916501 [J] KOG3424 40S ribosomal protein S24
Length = 130
Score = 108 bits (271), Expect = 9e-25
Identities = 55/108 (50%), Positives = 72/108 (65%), Gaps = 1/108 (0%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+L RKQ V+DVLHP +A V K E+REKLA+ YK D + VFGFRT +GGGK+TGFG++Y
Sbjct: 17 LLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIY 76
Query: 61 NSVADAKKFEPAYRLVRYGLAEKVEKASXXXXXXXXXXXXXIFGTGKS 108
+S+ AKK EP +RL R+GL EK +K S + GT K+
Sbjct: 77 DSLDYAKKNEPKHRLARHGLYEK-KKTSRKQRKERKNRMKKVRGTAKA 123
>CE29465 [J] KOG3424 40S ribosomal protein S24
Length = 329
Score = 108 bits (271), Expect = 9e-25
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+L RKQ VV+V+HP R V K ++REK+A+ YK D V FGF ++ GGGKS GF LVY
Sbjct: 17 LLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIGGGKSKGFALVY 76
Query: 61 NSVADAKKFEPAYRLVRYGLAEKVEKASXXXXXXXXXXXXXIFGTGK---SIAKKAARRN 117
+++ AKKFEP YRLVR GLA KVEK + GT K S KK++R +
Sbjct: 77 DTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGTAKAKVSAGKKSSRLS 136
Query: 118 A 118
A
Sbjct: 137 A 137
>7291445 [J] KOG3424 40S ribosomal protein S24
Length = 131
Score = 106 bits (264), Expect = 6e-24
Identities = 50/83 (60%), Positives = 63/83 (75%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+LARKQ V DVLHP ++V+K E+REKLA YK D V FGFRT +GGG+STGF L+Y
Sbjct: 18 LLARKQMVCDVLHPGLSSVNKTEIREKLAAMYKVTPDVVFAFGFRTNFGGGRSTGFALIY 77
Query: 61 NSVADAKKFEPAYRLVRYGLAEK 83
+++ AKKFEP YRL R+GL E+
Sbjct: 78 DTLDFAKKFEPKYRLARHGLFEQ 100
>Hs18545227 [J] KOG3424 40S ribosomal protein S24
Length = 110
Score = 62.8 bits (151), Expect = 7e-11
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGL 58
+L RKQ V+D+L+ +A V K E+ EKL + YK D + VFGFRT +GGGK F L
Sbjct: 17 LLQRKQMVIDILNTGKATVPKTEILEKLVKIYKTTLDVIFVFGFRTYFGGGKIADFDL 74
>Hs22060114 [J] KOG3424 40S ribosomal protein S24
Length = 285
Score = 59.3 bits (142), Expect = 8e-10
Identities = 33/80 (41%), Positives = 44/80 (54%), Gaps = 15/80 (18%)
Query: 4 RKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVYNSV 63
R+Q V+DVLHP +A K +++EKLAE K +D +TGFG +Y S
Sbjct: 211 RQQMVIDVLHPRKATAPKTDIQEKLAEMDKTTQD---------------TTGFGTIYKSS 255
Query: 64 ADAKKFEPAYRLVRYGLAEK 83
AKK EP +RL R+ EK
Sbjct: 256 DYAKKNEPKHRLARHSPCEK 275
>Hs20553180 [J] KOG3424 40S ribosomal protein S24
Length = 327
Score = 59.3 bits (142), Expect = 8e-10
Identities = 33/80 (41%), Positives = 44/80 (54%), Gaps = 15/80 (18%)
Query: 4 RKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVYNSV 63
R+Q V+DVLHP +A K +++EKLAE K +D +TGFG +Y S
Sbjct: 253 RQQMVIDVLHPRKATAPKTDIQEKLAEMDKTTQD---------------TTGFGTIYKSS 297
Query: 64 ADAKKFEPAYRLVRYGLAEK 83
AKK EP +RL R+ EK
Sbjct: 298 DYAKKNEPKHRLARHSPCEK 317
>Hs20537556_1 [J] KOG3424 40S ribosomal protein S24
Length = 84
Score = 58.9 bits (141), Expect = 1e-09
Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Query: 8 VVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVYNSV 63
++DVLHP +A V K E+++KLA+ YK D + VF FRT GG GFG++Y+S+
Sbjct: 2 LIDVLHPGKATVPKTEIQKKLAKMYKTTLDVIFVFAFRTHAGG----GFGMIYDSL 53
>ECU10g1570i [J] KOG3424 40S ribosomal protein S24
Length = 126
Score = 55.5 bits (132), Expect = 1e-08
Identities = 35/117 (29%), Positives = 56/117 (46%), Gaps = 1/117 (0%)
Query: 1 MLARKQFVVDVLHPNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVY 60
+L+RK+ V HP SK+E+REK++E Y+ +KD V V + +YG ++T +Y
Sbjct: 10 LLSRKELDVVAYHPGMPIPSKEEIREKISELYQTKKDNVVVMDLKNRYGTHRTTLKAKIY 69
Query: 61 NSVADAKKFEPAYRLVRYGLAEKVEKASXXXXXXXXXXXXXIFGTGKSIAKKAARRN 117
+S+ E + +V ++ IFGT K KKA R+N
Sbjct: 70 SSIEVLSNIEKKH-IVAKLTGKEFHVTPRRVRKDERKKRYKIFGTLKRAMKKAERKN 125
>Hs20471333_2 [J] KOG3424 40S ribosomal protein S24
Length = 52
Score = 43.5 bits (101), Expect = 5e-05
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 46 TQYGGGKSTGFGLVYNSVADAKKFEPAYRLVRYGLAEKVEKAS 88
T GGGK+TGF ++Y+S+ AKK E +RL R+ L EK EK S
Sbjct: 1 THSGGGKTTGFDVIYDSLDYAKKNEAKHRLARHSLDEK-EKTS 42
>SPAC4A8.10 [R] KOG4372 Predicted alpha/beta hydrolase
Length = 723
Score = 28.1 bits (61), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Query: 3 ARKQFVVDVLHPNRANVSKDE--LREKLAEAYKAEKDAVSVFGFRTQY 48
++ +V + H +NV D L+EKL E+ K+ K+ V V GF Y
Sbjct: 240 SKNSHLVVLTHGMHSNVGADMEYLKEKLIESSKSVKELVVVRGFTGNY 287
>SPCC622.12c [E] KOG2250 Glutamate/leucine/phenylalanine/valine dehydrogenases
Length = 451
Score = 27.3 bits (59), Expect = 3.5
Identities = 16/45 (35%), Positives = 23/45 (50%)
Query: 23 ELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVYNSVADAK 67
E R K AE K ++ A+S G QY K G + S++D+K
Sbjct: 209 EHRTKGAETLKGKRVAISGSGNVAQYAALKCIQEGAIVKSISDSK 253
>At1g61310 [T] KOG4658 Apoptotic ATPase
Length = 925
Score = 27.3 bits (59), Expect = 3.5
Identities = 14/52 (26%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 14 PNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVYNSVAD 65
P + + ++E+ EK + +D V + G G GK+T F ++N A+
Sbjct: 151 PTQPTIGQEEMLEKAWN--RLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAE 200
>Hs16507208 [K] KOG2746 HMG-box transcription factor Capicua and related
proteins
Length = 1608
Score = 26.6 bits (57), Expect = 6.0
Identities = 21/61 (34%), Positives = 24/61 (38%), Gaps = 6/61 (9%)
Query: 33 KAEKDAVSVFGFRTQYG------GGKSTGFGLVYNSVADAKKFEPAYRLVRYGLAEKVEK 86
+AE G RT+ G GG G LVY+ A PA LV L V K
Sbjct: 696 RAEASPNDTAGARTEMGTGSRVPGGSPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGK 755
Query: 87 A 87
A
Sbjct: 756 A 756
>At1g61300 [T] KOG4658 Apoptotic ATPase
Length = 763
Score = 26.6 bits (57), Expect = 6.0
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 14 PNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVYNSVADAKKFEPAY 73
P + + ++E+ EK + +D V + G G GK+T F ++N A K +
Sbjct: 38 PTQPTIGQEEMLEKAWN--RLMEDRVGIMGLHGMGGVGKTTLFKKIHNKFA---KMSSRF 92
Query: 74 RLVRYGLAEKVEKAS 88
+V + + K K S
Sbjct: 93 DIVIWIVVSKGAKLS 107
>At1g61180 [T] KOG4658 Apoptotic ATPase
Length = 889
Score = 26.2 bits (56), Expect = 7.8
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 14 PNRANVSKDELREKLAEAYKAEKDAVSVFGFRTQYGGGKSTGFGLVYNSVAD 65
P + + ++++ EK + +D V + G G GK+T F ++N A+
Sbjct: 149 PTQPTIGQEDMLEKAWN--RLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAE 198
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,602,689
Number of Sequences: 60738
Number of extensions: 190015
Number of successful extensions: 581
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 23
length of query: 119
length of database: 30,389,216
effective HSP length: 95
effective length of query: 24
effective length of database: 24,619,106
effective search space: 590858544
effective search space used: 590858544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)