ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1963 good Z KOG3380 Cytoskeleton Actin-related protein Arp2/3 complex, subunit ARPC5
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1963 700674 700216 -153
(153 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL062c [Z] KOG3380 Actin-related protein Arp2/3 complex subunit... 224 3e-59
SPAC17G8.04c [Z] KOG3380 Actin-related protein Arp2/3 complex su... 69 2e-12
Hs13569956 [Z] KOG3380 Actin-related protein Arp2/3 complex subu... 68 4e-12
Hs5031593 [Z] KOG3380 Actin-related protein Arp2/3 complex subun... 67 7e-12
CE08785 [Z] KOG3380 Actin-related protein Arp2/3 complex subunit... 60 1e-09
CE18061 [Z] KOG3380 Actin-related protein Arp2/3 complex subunit... 57 1e-08
7295938 [Z] KOG3380 Actin-related protein Arp2/3 complex subunit... 49 2e-06
>YIL062c [Z] KOG3380 Actin-related protein Arp2/3 complex subunit ARPC5
Length = 154
Score = 224 bits (571), Expect = 3e-59
Identities = 104/151 (68%), Positives = 122/151 (79%)
Query: 3 DWRRIDIDAYDPESGRLTADDLKPPYSHTVSLQELQPTIQQLRSYTSSGDFAAAVELFTT 62
DWRRIDIDA+DPESGRLTA DL PPY TV+LQELQP + QLRS +SGD AV+L TT
Sbjct: 4 DWRRIDIDAFDPESGRLTAADLVPPYETTVTLQELQPRMNQLRSLATSGDSLGAVQLLTT 63
Query: 63 DPPYNADEQAKSQYFSGILEVLTQVRQVDIANIVKRLDRKQQDALIKYLYKGMSIPEGQK 122
DPPY+AD K QYF +LE LTQVRQ DI N++K L Q+D L+KYLYKGMS+P+GQK
Sbjct: 64 DPPYSADAPTKEQYFKSVLEALTQVRQADIGNVIKNLSDSQRDVLVKYLYKGMSVPQGQK 123
Query: 123 HGGILLAWFEKLTQVAGVNPIVHYLSDRRTV 153
GG+LLAW E++TQV+GV PIVHY+SDRRTV
Sbjct: 124 QGGVLLAWLERITQVSGVTPIVHYISDRRTV 154
>SPAC17G8.04c [Z] KOG3380 Actin-related protein Arp2/3 complex subunit ARPC5
Length = 152
Score = 69.3 bits (168), Expect = 2e-12
Identities = 40/152 (26%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 4 WRRIDIDAYDPESGRLTADDLKPPYSHTVSLQELQPTIQQL----RSYTSSGDFAAAVEL 59
+R +D+D+ LT D+ P + T +++Q + QL RS +G+ ++
Sbjct: 3 FRTLDVDSITEPV--LTEQDIFPIRNETA--EQVQAAVSQLIPQARSAIQTGNALQGLKT 58
Query: 60 FTTDPPYNAD-EQAKSQYFSGILEVLTQVRQVDIANIVKRLDRKQQDALIKYLYKGMSIP 118
+ PY D ++ ++QY + ++VL+ +R DI VK ++ D ++ ++Y+G++ P
Sbjct: 59 LLSYVPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANP 118
Query: 119 EGQKHGGILLAWFEKLTQVAGVNPIVHYLSDR 150
+ + +LL W EK+ +++G+ IV L+ R
Sbjct: 119 QAY-NSSVLLNWHEKVVEISGIGCIVRVLNSR 149
>Hs13569956 [Z] KOG3380 Actin-related protein Arp2/3 complex subunit ARPC5
Length = 153
Score = 68.2 bits (165), Expect = 4e-12
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 4 WRRIDIDAYDPESGRLTADDLKPPYSHTVSLQELQPTIQQLRSYTSSGDFAAAVELFTTD 63
+RR+DID +D D+ + + E P ++ GD A +
Sbjct: 10 FRRVDIDEFDENK---FVDEQEEA---AAAAAEPGPDPSEVDGLLRQGDMLRAFHAALRN 63
Query: 64 PPYNADEQAKSQYFSGI-LEVLTQVRQVDIANIVKRLDRKQQDALIKYLYKGMSIPEGQK 122
P N QA + G+ L+VLT + +I V+ LDR D L+KY+YKG P +
Sbjct: 64 SPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT-EN 122
Query: 123 HGGILLAWFEKLTQVAGVNPIVHYLSDRRTV 153
+LL W EK V G+ I+ L+ R+TV
Sbjct: 123 SSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
>Hs5031593 [Z] KOG3380 Actin-related protein Arp2/3 complex subunit ARPC5
Length = 151
Score = 67.4 bits (163), Expect = 7e-12
Identities = 48/151 (31%), Positives = 73/151 (47%), Gaps = 11/151 (7%)
Query: 4 WRRIDIDAYDPESGRLTADDLKPPYSHTVSLQELQPTIQQLRSYTSSGDFAAAVELFTTD 63
+R++D+D YD E+ + +D + P ++ S G+ AA++ +
Sbjct: 11 FRKVDVDEYD-ENKFVDEEDGGDG--------QAGPDEGEVDSCLRQGNMTAALQAALKN 61
Query: 64 PPYNADEQA-KSQYFSGILEVLTQVRQVDIANIVKRLDRKQQDALIKYLYKGMSIPEGQK 122
PP N QA K + S +L+VL + DI V+ LD+ D L+KY+YKG P
Sbjct: 62 PPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP-SDN 120
Query: 123 HGGILLAWFEKLTQVAGVNPIVHYLSDRRTV 153
+LL W EK GV IV L+ R+TV
Sbjct: 121 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
>CE08785 [Z] KOG3380 Actin-related protein Arp2/3 complex subunit ARPC5
Length = 146
Score = 60.1 bits (144), Expect = 1e-09
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 3 DWRRIDIDAYDPESGRLTADDLKPPYSHTVSLQELQ----PTIQQLRSYTSSGDFAAAVE 58
D+++ ++D + P +H +QE P +Q++R + S A++
Sbjct: 5 DYKKYNVDIFHP--------------AHFEDIQEESADCGPNVQEVRQFLESNRLEYALQ 50
Query: 59 LFTTDPPYNADEQA-KSQYFSGILEVLTQVRQVDIANIVKRLDRKQQDALIKYLYKGMSI 117
+PP+ EQ K++ + EV+ RQ DI V +L + D L+KY+YK M +
Sbjct: 51 SVLLNPPFGHSEQELKNRAVLLVAEVIHAFRQTDIEESVHKLSNENGDILMKYIYKAMQL 110
Query: 118 PEGQKHGGILLAWFEKLTQVAGVNPIVHYLSDRR 151
LL W +L G IV LS+R+
Sbjct: 111 CSDSATCLSLLLWHSQLVSKFGQGSIVRVLSNRQ 144
>CE18061 [Z] KOG3380 Actin-related protein Arp2/3 complex subunit ARPC5
Length = 152
Score = 56.6 bits (135), Expect = 1e-08
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Query: 4 WRRIDIDAYDPESGRLTADDLKPPYSHTVSLQELQPTIQQLRSYTSSGDFAAAVELFTTD 63
+R++D+D++DPE TV L P + ++ + SS A+
Sbjct: 10 YRKLDVDSFDPEQ--------YDENDETVDTPGLGPDERAVQGFLSSNRLEDALHAALLS 61
Query: 64 PPYNA-DEQAKSQYFSGILEVLTQVRQVDIANIVKRLDRKQQDALIKYLYKGMSIPEGQK 122
PP D+ K + + +VL + +I V++L ++ D L+KY+YK M I
Sbjct: 62 PPLKTKDQNVKDRATQLVTKVLQSFKNAEIEATVQKLSIEESDILMKYVYKSMEIGADAA 121
Query: 123 HGGILLAWFEKLTQVAGVNPIVHYLSDRR 151
LLAW +L G I+ S R+
Sbjct: 122 VCQSLLAWHAQLVAKFGHGAIMRVFSGRQ 150
>7295938 [Z] KOG3380 Actin-related protein Arp2/3 complex subunit ARPC5
Length = 151
Score = 49.3 bits (116), Expect = 2e-06
Identities = 41/148 (27%), Positives = 63/148 (41%), Gaps = 12/148 (8%)
Query: 4 WRRIDIDAYDPESGRLTADDLKPPYSHTVSLQELQPTIQQLRSYTSSGDFAAAVELFTTD 63
+R+ID+D Y+ ++ R DD V P ++ + + G A+ +
Sbjct: 10 FRKIDVDQYNEDNFR--EDD-------GVESAAAGPDESEITTLLTQGKSVEALLSALQN 60
Query: 64 PPYNADEQ-AKSQYFSGILEVLTQVRQVDIANIVKRLDRKQQ-DALIKYLYKGMSIPEGQ 121
P Q K + L VL ++ + + LD+ D L+KY+Y+G IP +
Sbjct: 61 APLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQNDLIDVLMKYIYRGFEIP-SE 119
Query: 122 KHGGILLAWFEKLTQVAGVNPIVHYLSD 149
G LL W EK GV IV LSD
Sbjct: 120 GSSGHLLQWHEKAFAKGGVGCIVRVLSD 147
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,330,104
Number of Sequences: 60738
Number of extensions: 348552
Number of successful extensions: 964
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 7
length of query: 153
length of database: 30,389,216
effective HSP length: 97
effective length of query: 56
effective length of database: 24,497,630
effective search space: 1371867280
effective search space used: 1371867280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)