ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII1978 check: MH A KOG0113 RNA processing and modification U1 small nuclear ribonucleoprotein (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII1978 705104 704202 -301
(301 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL061c [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM supe... 144 2e-34
SPAC19A8.13 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM ... 103 2e-22
Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 86 7e-17
Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM s... 86 7e-17
At3g50670 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 85 1e-16
CE01998 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM supe... 83 6e-16
7297205 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM supe... 79 8e-15
At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 62 8e-10
At5g61030 [R] KOG0118 FOG: RRM domain 60 5e-09
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 59 7e-09
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 59 1e-08
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 58 1e-08
CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 57 3e-08
Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 56 6e-08
Hs14719414 [R] KOG0118 FOG: RRM domain 55 1e-07
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 54 3e-07
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 54 4e-07
CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 54 4e-07
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 54 4e-07
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 53 5e-07
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 53 5e-07
At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 53 6e-07
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 53 6e-07
At1g74230 [R] KOG0118 FOG: RRM domain 53 6e-07
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 52 8e-07
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 52 8e-07
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 52 8e-07
Hs4503259 [R] KOG0118 FOG: RRM domain 52 1e-06
Hs14731277 [R] KOG0118 FOG: RRM domain 52 1e-06
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 51 2e-06
At4g39260 [R] KOG0118 FOG: RRM domain 51 2e-06
At3g26420 [R] KOG0118 FOG: RRM domain 51 2e-06
At3g23830 [R] KOG0118 FOG: RRM domain 51 2e-06
At3g08000 [R] KOG0118 FOG: RRM domain 51 2e-06
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 51 2e-06
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 51 2e-06
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 51 2e-06
At1g60000 [R] KOG0118 FOG: RRM domain 51 2e-06
Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 50 3e-06
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 50 3e-06
YNL110c [R] KOG4208 Nucleolar RNA-binding protein NIFK 50 4e-06
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 50 4e-06
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 50 4e-06
At2g21660 [R] KOG0118 FOG: RRM domain 50 4e-06
At1g11650 [R] KOG0118 FOG: RRM domain 50 4e-06
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 50 4e-06
7301511 [R] KOG0118 FOG: RRM domain 50 4e-06
YNL016w [R] KOG0118 FOG: RRM domain 50 5e-06
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 50 5e-06
CE24459 [R] KOG0226 RNA-binding proteins 50 5e-06
7303943 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superf... 50 5e-06
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 50 5e-06
7291799 [R] KOG0118 FOG: RRM domain 50 5e-06
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 49 7e-06
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 49 7e-06
At3g18610 [K] KOG4210 Nuclear localization sequence binding protein 49 7e-06
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 49 7e-06
At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein 49 7e-06
SPAC22E12.02 [R] KOG0226 RNA-binding proteins 49 9e-06
Hs4502847 [R] KOG0118 FOG: RRM domain 49 9e-06
Hs13123778 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 49 9e-06
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 49 9e-06
7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 49 9e-06
>YIL061c [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 300
Score = 144 bits (362), Expect = 2e-34
Identities = 86/222 (38%), Positives = 122/222 (54%), Gaps = 7/222 (3%)
Query: 15 HTLTKLPSSVSKLFTQG--XXXXXXXXXXXXNQNKKYALTGVSAVLQ-HVSEYKKATHPV 71
+ L+K P VS+LF + +TGV+ +L + Y +
Sbjct: 3 YNLSKYPDDVSRLFKPRPPLSYKRPTDYPYAKRQTNPNITGVANLLSTSLKHYMEEFPEG 62
Query: 72 SENQHLKVYDEAMNESHKEQEELMKKIQEWHPESDANIS-SDPYRTLFVGRLHYAVDEVE 130
S N HL+ Y++ K + L +++Q W+P D +I +DPYRT+F+GRL Y +DE+E
Sbjct: 63 SPNNHLQRYEDIKLSKIKNAQLLDRRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIE 122
Query: 131 LQKSFVKYGDIESCRIVRDQ-DGKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGRTSI 189
LQK FVK+G+IE RIV+D+ KS+GY F+ F SK F+E+GV +GI+I R I
Sbjct: 123 LQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICI 182
Query: 190 VDIERGRTVKFFKPXXXXXXXXXXXYQRKD--LVNKLTGAST 229
VDIERGRTVK+FKP Y +D L + AST
Sbjct: 183 VDIERGRTVKYFKPRRLGGGLGGRGYSNRDSRLPGRFASAST 224
>SPAC19A8.13 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 261
Score = 103 bits (258), Expect = 2e-22
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 9/156 (5%)
Query: 51 LTGVSAVLQHVSEYKKATHPVS--ENQHLKVYDEAMNESHKEQEELMKKIQEWHPESDAN 108
++G++ L++ + + HP E + L++ DE + ++E L I+ W P+ D +
Sbjct: 37 VSGIAKYLKYAQSHDQQYHPTESLEEKRLRLRDEKQKQ---QRERLRSMIKVWDPDHDRH 93
Query: 109 ISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQ-DGKSRGYGFVQFTSYED 167
+ DPY+T+F+ RL Y E ++++ F +YG IE R+VR++ GKS GY FV F D
Sbjct: 94 VIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERD 153
Query: 168 SKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKP 203
K ++ G+ + GR +VD+ERGRTVK + P
Sbjct: 154 LKVAYK---ASAGLMLNGRRIVVDVERGRTVKGWLP 186
>Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 614
Score = 85.9 bits (211), Expect = 7e-17
Identities = 47/162 (29%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
Query: 44 NQNKKYALTGVSAVLQHVSEYKKATHPV-SENQHLKVYDEAMNESHKEQEELMKKIQEWH 102
+ N+ Y G++ ++ + + A P +E + ++ + + + Q+E+ +++ W
Sbjct: 210 HHNQPYC--GIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD 267
Query: 103 PESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIV-RDQDGKSRGYGFVQ 161
P +D N D ++TLFV R++Y E +L++ F YG I+ +V + GK RGY F++
Sbjct: 268 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 327
Query: 162 FTSYEDSKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKP 203
+ D ++ G +I GR +VD+ERGRTVK ++P
Sbjct: 328 YEHERDMHSAYKH---ADGKKIDGRRVLVDVERGRTVKGWRP 366
>Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 437
Score = 85.9 bits (211), Expect = 7e-17
Identities = 47/162 (29%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
Query: 44 NQNKKYALTGVSAVLQHVSEYKKATHPV-SENQHLKVYDEAMNESHKEQEELMKKIQEWH 102
+ N+ Y G++ ++ + + A P +E + ++ + + + Q+E+ +++ W
Sbjct: 33 HHNQPYC--GIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWD 90
Query: 103 PESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIV-RDQDGKSRGYGFVQ 161
P +D N D ++TLFV R++Y E +L++ F YG I+ +V + GK RGY F++
Sbjct: 91 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 150
Query: 162 FTSYEDSKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKP 203
+ D ++ G +I GR +VD+ERGRTVK ++P
Sbjct: 151 YEHERDMHSAYKH---ADGKKIDGRRVLVDVERGRTVKGWRP 189
>At3g50670 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 427
Score = 84.7 bits (208), Expect = 1e-16
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Query: 89 KEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVR 148
K E+ + ++++ P +D N + DPY+TLFV RL+Y E ++++ F YG I+ +V
Sbjct: 112 KGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVT 171
Query: 149 DQ-DGKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKP 203
DQ K +GY F+++ D K +++ G +I GR +VD+ERGRTV ++P
Sbjct: 172 DQLTNKPKGYAFIEYMHTRDMKAAYKQ---ADGQKIDGRRVLVDVERGRTVPNWRP 224
>CE01998 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 328
Score = 82.8 bits (203), Expect = 6e-16
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 16/162 (9%)
Query: 47 KKYALTGVSAVLQHVSEYKKATHPVSENQHLKVYDEAMNESHKEQEELM-----KKIQEW 101
K+ +TGV+ +Q + K + + EA E ++++EL+ + I W
Sbjct: 35 KRAPMTGVAQYIQLFEDPKDTPAKIP----VVTKAEAKEEKRRQKDELLAYKVEQGIATW 90
Query: 102 HPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQ 161
+P + S DPYRTLF +Y E +L++ F YG I+ +V D+ GK RGY F++
Sbjct: 91 NPAENPRASEDPYRTLF----NYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIE 146
Query: 162 FTSYEDSKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKP 203
++ + +++ GI++ G+ +VD ERGRT K + P
Sbjct: 147 YSDKAEMHTAYKK---ADGIKVDGKRLVVDYERGRTQKTWLP 185
>7297205 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 448
Score = 79.0 bits (193), Expect = 8e-15
Identities = 53/213 (24%), Positives = 96/213 (44%), Gaps = 7/213 (3%)
Query: 44 NQNKKYALTGVSAVLQHVSEYKKATHPVS-ENQHLKVYDEAMNESHKEQEELMKKIQEWH 102
++ K GV+ + + K P + E + ++ ++ + +L ++I W
Sbjct: 30 HEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWD 89
Query: 103 PESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQ 161
P N + DP+RTLF+ R++Y E +L++ F YG I+ ++ DQ+ GK +GY F++
Sbjct: 90 PTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIE 149
Query: 162 FTSYEDSKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKPXXXXXXXXXXXYQRKDLV 221
+ D ++ G +I + +VD+ER RTVK + P D+
Sbjct: 150 YEHERDMHAAYKH---ADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVN 206
Query: 222 NKLTGASTRPMHEHARRPIRRHDTFERRGPPQG 254
K +G R R + +R GP +G
Sbjct: 207 IKHSGREDNERERERYRLERERE--DREGPGRG 237
>At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 292
Score = 62.4 bits (150), Expect = 8e-10
Identities = 50/149 (33%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 101 WHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRD-QDGKSRGYGF 159
+ P D+ DPY TLFVGRL + E L++ KYG I++ R+VR G SRGYGF
Sbjct: 44 YDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGF 103
Query: 160 VQFTSYEDSKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKPXXXXXXXXXXXYQRKD 219
V+ YE K+ R I GR IVD R + + + P RK+
Sbjct: 104 VE---YETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGG----RKE 156
Query: 220 LVNKLTGASTRPMHEHARRPIRRHDTFER 248
G RP R P+R+ +R
Sbjct: 157 SGQLRFGGRDRPF----RAPLRKGSVSDR 181
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 59.7 bits (143), Expect = 5e-09
Identities = 31/82 (37%), Positives = 51/82 (61%), Gaps = 4/82 (4%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFREL 175
LF+G + Y++DE L+++F KYG++ R++ D++ G+SRG+GFV FTS E + + L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 176 GVRKGIEIMGRTSIVDIERGRT 197
G ++ GR V+ RT
Sbjct: 102 ---DGRDLHGRVVKVNYANDRT 120
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 59.3 bits (142), Expect = 7e-09
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 81 DEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGD 140
DE ++ EE KI + P D+N + T+FVGRL + VD+ L + F +YG
Sbjct: 235 DEKKRKAEPASEERPAKITK--PSQDSNETC----TVFVGRLSWNVDDQWLGQEFEEYGT 288
Query: 141 IESCRIVRD-QDGKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGRTSIVDIERGR 196
I R++ D Q G+S+GYG+V F + E +K G + EI GR +D+ R
Sbjct: 289 IVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTK---EIDGRMVNLDLSNPR 342
Score = 52.4 bits (124), Expect = 8e-07
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 111 SDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRD-QDGKSRGYGFVQFTSYEDSK 169
S+P T+FVG L + E +L +F GDI+S R+ D Q G+ +G+G+V F+ + +K
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 170 QCFRELGVRKGIEIMGRTSIVDIERGRT 197
+C G I GR +D RT
Sbjct: 422 KCVE----MNGHFIAGRPCRLDFSTPRT 445
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 58.5 bits (140), Expect = 1e-08
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 108 NISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQ-DGKSRGYGFVQFTSYE 166
N DP L V L + + E++ FV +G++ESC+++RD+ G+S GYGFV + E
Sbjct: 103 NNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQE 162
Query: 167 DSKQCFRELGVRKGIEIMGRTSIVDIER 194
D+++ L G+ + +T V I R
Sbjct: 163 DAEKAINAL---NGLRLQNKTIKVSIAR 187
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 58.2 bits (139), Expect = 1e-08
Identities = 34/118 (28%), Positives = 64/118 (53%), Gaps = 9/118 (7%)
Query: 65 KKATHPVSENQHL--KVYDEAMNESHKEQEELMKKIQEWHPESDANISSDPYR--TLFVG 120
+KA +++ ++ K+Y + H+ +EEL K+ ++ E + Y+ LF+
Sbjct: 315 QKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEK-----MNKYQGVNLFIK 369
Query: 121 RLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRELGVR 178
L VD+ L+ F +G I S +I+ D+ GKS+G+GFV +T+ E++ + E+ R
Sbjct: 370 NLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQR 427
>CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 584
Score = 57.0 bits (136), Expect = 3e-08
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 115 RTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTS 164
R LF+G+L +E L++ F K+G IE C ++RDQDGKSRG FV FT+
Sbjct: 142 RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTN 191
>Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 246
Score = 56.2 bits (134), Expect = 6e-08
Identities = 40/139 (28%), Positives = 64/139 (45%), Gaps = 8/139 (5%)
Query: 109 ISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRD-QDGKSRGYGFVQFTSYED 167
+ DP TLFV RL+ E +L++ F +YGDI R+VRD G S+GY F++ Y++
Sbjct: 45 VIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIE---YKE 101
Query: 168 SKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKPXXXXXXXXXXXYQRKDLVNKLTGA 227
+ + G+ I VD E RT+K + P +K+ G
Sbjct: 102 ERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGG----KKESGQLRFGG 157
Query: 228 STRPMHEHARRPIRRHDTF 246
RP + P+ ++D +
Sbjct: 158 RDRPFRKPINLPVVKNDLY 176
>Hs14719414 [R] KOG0118 FOG: RRM domain
Length = 283
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRE 174
+FVG + + +E +L+K F +YG ++ +IV D+ G S+GYGFV F + ED+++ +E
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQE 92
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 72 SENQHLKVYDEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVEL 131
SE K+Y + ++ L K+ + + E A LFV L +VD+ +L
Sbjct: 282 SELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGV---NLFVKNLDDSVDDEKL 338
Query: 132 QKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRE 174
++ F YG I S +++R ++GKS+G+GFV F++ E++ + E
Sbjct: 339 EEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITE 381
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 53.5 bits (127), Expect = 4e-07
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 61 VSEYKKATHPVSENQHLKVYDEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVG 120
VS + T E+ + + E H Q +MKK + P NI FV
Sbjct: 52 VSSFAFVTFENEEDAERAIREYKHYELHNRQIRVMKKDER--PPETGNI--------FVK 101
Query: 121 RLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRELGVRKG 180
L +L +F +G+I SC++ GKS+GYGFVQF + +K+ + G
Sbjct: 102 NLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDG 161
Query: 181 IEIMGRTSIVDI 192
+ + G +V++
Sbjct: 162 LLLGGNRIVVEL 173
>CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 434
Score = 53.5 bits (127), Expect = 4e-07
Identities = 30/98 (30%), Positives = 54/98 (54%), Gaps = 8/98 (8%)
Query: 86 ESHKEQEELMKKIQ---EWHPESDANISSDPYRT----LFVGRLHYAVDEVELQKSFVKY 138
+SH +E L K++ + P S P + +FVG L +D +L+++FVK+
Sbjct: 96 QSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKF 155
Query: 139 GDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFREL 175
G++ +I+RD + K +GYGFV + ED+++ E+
Sbjct: 156 GEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 53.5 bits (127), Expect = 4e-07
Identities = 23/80 (28%), Positives = 44/80 (54%)
Query: 96 KKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSR 155
K I+ + D ++ +F+ L ++D L +F +G+I SC++ D G+S+
Sbjct: 105 KPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSK 164
Query: 156 GYGFVQFTSYEDSKQCFREL 175
GYGFVQ+ + E +++ +L
Sbjct: 165 GYGFVQYANEESAQKAIEKL 184
Score = 49.3 bits (116), Expect = 7e-06
Identities = 22/76 (28%), Positives = 43/76 (55%)
Query: 104 ESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFT 163
E D+ + + ++V L + + +L+ +F +YG I S +++D +GKS+G+GFV F
Sbjct: 204 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 263
Query: 164 SYEDSKQCFRELGVRK 179
+ +D+ + L K
Sbjct: 264 NADDAARAVESLNGHK 279
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 53.1 bits (126), Expect = 5e-07
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 110 SSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDS 168
S+ P R L+VG LH+ + E L+ F +G IES +++ D + G+S+GYGF+ F+ E +
Sbjct: 246 SAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 169 KQCFRELGVRKGIEIMGR 186
K+ +L G E+ GR
Sbjct: 305 KKALEQL---NGFELAGR 319
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 53.1 bits (126), Expect = 5e-07
Identities = 29/82 (35%), Positives = 47/82 (56%), Gaps = 4/82 (4%)
Query: 115 RTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFR 173
R++FVG + Y V E ++ F K G++ S ++V D++ GK +GYGF++F + ++ R
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 174 ELGVRKGIEIMGRTSIVDIERG 195
L G E+ GR VD G
Sbjct: 78 NL---NGYELSGRILRVDSAAG 96
>At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 52.8 bits (125), Expect = 6e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 115 RTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRD-QDGKSRGYGFVQFTSYEDSKQCFR 173
R L+VG LH+ + E++L++ F +G +E ++ D + G+ +G+GF+QF E SK
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAA-- 322
Query: 174 ELGVRKGIEIMGRT 187
++ + +EI GRT
Sbjct: 323 QIALNGKLEIAGRT 336
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 52.8 bits (125), Expect = 6e-07
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 96 KKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSR 155
K I+ + D++ LFV L +VD L ++F G I SC++ D G+SR
Sbjct: 115 KMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSR 174
Query: 156 GYGFVQFTSYEDSKQCFREL 175
GYGFVQF + + +K +L
Sbjct: 175 GYGFVQFDTEDSAKNAIEKL 194
Score = 50.4 bits (119), Expect = 3e-06
Identities = 25/66 (37%), Positives = 39/66 (58%)
Query: 114 YRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFR 173
+ ++V L A + EL+ +F +YG I S ++RD DGKSR +GFV F + ED+ +
Sbjct: 224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVE 283
Query: 174 ELGVRK 179
L +K
Sbjct: 284 ALNGKK 289
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 52.8 bits (125), Expect = 6e-07
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFR 173
+FVG + Y+ DE L+++F KYG++ +I+ D++ G+SRG+ FV FTS E++ +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 52.4 bits (124), Expect = 8e-07
Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 81 DEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGD 140
+E+ ++ K ++ ++ +E + N ++ T+FVGRL +++D+ L+K F G
Sbjct: 134 EESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGG 193
Query: 141 IESCRIVRDQ-DGKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGRTSIVDIERGR 196
+ R++ ++ +SRGYG+V F + +++ +E+ +G EI GR D+ +
Sbjct: 194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM---QGKEIDGRPINCDMSTSK 247
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 52.4 bits (124), Expect = 8e-07
Identities = 30/94 (31%), Positives = 52/94 (54%), Gaps = 4/94 (4%)
Query: 82 EAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDI 141
+A +S +E E K Q +D + S+ L+V L +V + +L++ F +G I
Sbjct: 298 KAQKKSERETELKQKFEQSLKEAADKSQGSN----LYVKNLDESVTDDKLREHFAPFGTI 353
Query: 142 ESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFREL 175
SC+++RD G SRG GFV F++ E++ + E+
Sbjct: 354 TSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEM 387
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 52.4 bits (124), Expect = 8e-07
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 88 HKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIV 147
H + E+ ++Q P + P R L+VG LH+ + E L+ F +G I++ +++
Sbjct: 311 HTQAEK--NRLQNAAPAFQPKSHTGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDAIQLI 367
Query: 148 RDQD-GKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGR 186
D + G+S+GYGF+ + + +D+K+ +L G E+ GR
Sbjct: 368 MDTETGRSKGYGFITYHNADDAKKALEQL---NGFELAGR 404
>Hs4503259 [R] KOG0118 FOG: RRM domain
Length = 295
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/67 (35%), Positives = 40/67 (58%), Gaps = 9/67 (13%)
Query: 116 TLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFREL 175
T+FVG + +DE E++ F +YG ++ +I+ D+ G S+GYGFV F F ++
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF---------FNDV 91
Query: 176 GVRKGIE 182
V+K +E
Sbjct: 92 DVQKIVE 98
>Hs14731277 [R] KOG0118 FOG: RRM domain
Length = 295
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/67 (35%), Positives = 40/67 (58%), Gaps = 9/67 (13%)
Query: 116 TLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFREL 175
T+FVG + +DE E++ F +YG ++ +I+ D+ G S+GYGFV F F ++
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF---------FNDV 91
Query: 176 GVRKGIE 182
V+K +E
Sbjct: 92 DVQKIVE 98
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/87 (27%), Positives = 48/87 (54%), Gaps = 3/87 (3%)
Query: 104 ESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFT 163
E++ + + +++ VD+ L++ F ++G S +++RD +GKS+G+GFV +
Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYE 239
Query: 164 SYEDSKQCFRELGVRKGIEIMGRTSIV 190
+ED+ + E+ G EI G+ V
Sbjct: 240 KHEDANKAVEEM---NGKEISGKIIFV 263
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 51.2 bits (121), Expect = 2e-06
Identities = 27/80 (33%), Positives = 48/80 (59%), Gaps = 4/80 (5%)
Query: 118 FVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFRELG 176
FVG L +A ++ +LQ++F ++GD+ +I+ D++ G+SRG+GFV F + + E+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM- 67
Query: 177 VRKGIEIMGRTSIVDIERGR 196
G E+ GR V+ + R
Sbjct: 68 --NGKELDGRVITVNEAQSR 85
>At3g26420 [R] KOG0118 FOG: RRM domain
Length = 245
Score = 51.2 bits (121), Expect = 2e-06
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 109 ISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQ-DGKSRGYGFVQFTSYED 167
+S DP F+G L + + L+ +F KYG + ++V D+ G+SRG+GF+ F ++
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITF---DE 57
Query: 168 SKQCFRELGVRKGIEIMGRTSIVD 191
K + G+++ GRT VD
Sbjct: 58 KKAMDEAIAAMNGMDLDGRTITVD 81
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFREL 175
LFVG L + D+ L+++F +G++ ++ D++ G+SRG+GFV F+ + + +E+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 176 GVRKGIEIMGRTSIVDIERGRT 197
G E+ GR V++ R+
Sbjct: 97 ---DGKELNGRQIRVNLATERS 115
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 103 PESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQ-DGKSRGYGFVQ 161
P+ + S+ P LF+G L ++VDE L+ +F +G++ RI D+ G+SRG+GFV
Sbjct: 29 PQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVD 88
Query: 162 FTSYEDS 168
F D+
Sbjct: 89 FAEEGDA 95
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 114 YRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFR 173
+ ++V L + + EL+K+F KYGDI S +++DQ G SR +GFV F S E +
Sbjct: 224 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 283
Query: 174 EL-GVRKGIEIM 184
++ G+ G +++
Sbjct: 284 KMNGISLGEDVL 295
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/105 (25%), Positives = 59/105 (55%), Gaps = 4/105 (3%)
Query: 71 VSENQHLKVYDEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVE 130
+S + + A +S +E EEL +K ++ E + L++ L +V++ +
Sbjct: 288 ISLGEDVLYVGRAQKKSDRE-EELRRKFEQ---ERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 131 LQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFREL 175
L++ F +YG++ SC+++ + G SRG+GFV +++ E++ +E+
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 50.8 bits (120), Expect = 2e-06
Identities = 20/62 (32%), Positives = 42/62 (67%)
Query: 114 YRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFR 173
+ +FV + +D+ +L++ F +YG ES +++RD GKS+G+GFV++ ++E +++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVL 257
Query: 174 EL 175
+L
Sbjct: 258 DL 259
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQF 162
+FV L +V LQ F K+G+I SC++ +DGKSRGYGFVQF
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQF 159
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFREL 175
LFVG L + V L +F + GD+ R+V D D G+SRGYGFV ++S + + L
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 176 GVRKGIEIMGRTSIVDIERGR 196
G E+ GR V++ +G+
Sbjct: 239 ---DGFELEGRAIRVNLAQGK 256
>Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 759
Score = 50.4 bits (119), Expect = 3e-06
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 78 KVYDEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVK 137
K+ ++ + E E KK P++ +D L + L + E +L+ F +
Sbjct: 81 KLRNKTKEKGKNENSECPKK----EPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQ 136
Query: 138 YGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGRTSIVD 191
+G + I R DGK RG+GFVQF + ++ + + + ++ EI GRT VD
Sbjct: 137 FGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMK---EIKGRTVAVD 187
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 50.4 bits (119), Expect = 3e-06
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 73 ENQHLKVYDEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQ 132
E LK++ + + EL KK ++ E L+V L VD+ L+
Sbjct: 278 EGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV---NLYVKNLDETVDDDGLK 334
Query: 133 KSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFREL 175
K F YG+I S +++ D++G+S+G+GFV F E++ E+
Sbjct: 335 KQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEM 377
>YNL110c [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 220
Score = 50.1 bits (118), Expect = 4e-06
Identities = 29/97 (29%), Positives = 49/97 (49%), Gaps = 1/97 (1%)
Query: 73 ENQHLKVYDEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQ 132
E + L D+ + +HK + KK D + ++V RL + E EL
Sbjct: 49 EIEGLAASDDEQSGTHKIKRLNPKKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELS 108
Query: 133 KSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDS 168
K F ++GD++ R+ R++ G SR YGF++F + ED+
Sbjct: 109 KYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDA 145
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 50.1 bits (118), Expect = 4e-06
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFREL 175
L+VG LH+ + E L+ F +G I++ +++D D G+S+GYGF+ F+ E +++ +L
Sbjct: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
Query: 176 GVRKGIEIMGR 186
G E+ GR
Sbjct: 291 ---NGFELAGR 298
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 50.1 bits (118), Expect = 4e-06
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFREL 175
L+VG LH+ + E L+ F +G I++ +++D D G+S+GYGF+ F+ E +++ +L
Sbjct: 249 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 308
Query: 176 GVRKGIEIMGR 186
G E+ GR
Sbjct: 309 ---NGFELAGR 316
>At2g21660 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 50.1 bits (118), Expect = 4e-06
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 110 SSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDS 168
S D FVG L +A D+ L+ +F +YGD+ +I+ D++ G+SRG+GFV F +D
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF---KDE 59
Query: 169 KQCFRELGVRKGIEIMGRTSIVDIERGR 196
K + G ++ GR+ V+ + R
Sbjct: 60 KAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 50.1 bits (118), Expect = 4e-06
Identities = 27/73 (36%), Positives = 44/73 (59%), Gaps = 6/73 (8%)
Query: 99 QEWHPESDANIS-----SDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRD-QDG 152
Q W+P++ A S +D RTL++G L Y +DE L F G++ S +++R+ Q G
Sbjct: 41 QMWNPQAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTG 100
Query: 153 KSRGYGFVQFTSY 165
+ GYGF++F S+
Sbjct: 101 QVEGYGFIEFASH 113
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 50.1 bits (118), Expect = 4e-06
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 79 VYDEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKY 138
+Y + + Q+EL +K +E + ++ L+V L +D+ L+ +F Y
Sbjct: 254 LYVARAQKKAERQQELKRKFEELKQKRHESVFGV---NLYVKNLDDTIDDDRLRIAFSPY 310
Query: 139 GDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRELGVR 178
G+I S +++ D++G+S+G+GFV F + ++ EL R
Sbjct: 311 GNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGR 350
>7301511 [R] KOG0118 FOG: RRM domain
Length = 471
Score = 50.1 bits (118), Expect = 4e-06
Identities = 43/175 (24%), Positives = 83/175 (46%), Gaps = 17/175 (9%)
Query: 103 PESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQ-DGKSRGYGFVQ 161
PE ++ ++ + LFVG L DE L++ F+++G++ S +++ D+ GK RG+ FV+
Sbjct: 111 PERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVE 170
Query: 162 FTSYED-SKQCFRELGVRKGIEIMGRTSIVDIERGRTVKFFKPXXXXXXXXXXXYQRKDL 220
F Y+ K ++ K + + + SI ++++ +P Q++
Sbjct: 171 FDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQ---QPGGLANAIKPSLNQQQ-- 225
Query: 221 VNKLTGASTRPMHEHARRPIRRHDTFERRGPPQGHSHSYQ---PTSPISSPASNF 272
+ G +P + + + P +F PPQ YQ P +P+S+P NF
Sbjct: 226 --QQQGGGQQPPNGNMQAP-----SFRPPVPPQQAMGPYQQQPPPAPMSAPPPNF 273
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 49.7 bits (117), Expect = 5e-06
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 89 KEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVR 148
K+ E + KI W +S + S D + LFVG L+ VD+ L+ +F + S ++
Sbjct: 138 KQIENNIVKIN-WAFQSQQSSSDDTFN-LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 195
Query: 149 D-QDGKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGR 186
D Q G SRGYGFV FTS +D++ + +G ++ GR
Sbjct: 196 DMQTGSSRGYGFVSFTSQDDAQNAMDSM---QGQDLNGR 231
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 49.7 bits (117), Expect = 5e-06
Identities = 34/95 (35%), Positives = 52/95 (53%), Gaps = 5/95 (5%)
Query: 82 EAMNESHKEQ-EELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGD 140
EA+N +K + E +++ P N S P +TLFV L E L++SF G
Sbjct: 538 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GS 595
Query: 141 IESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFRE 174
+ + RIV D++ G S+G+GFV F S ED+K+ +
Sbjct: 596 VRA-RIVTDRETGSSKGFGFVDFNSEEDAKEAMED 629
Score = 49.3 bits (116), Expect = 7e-06
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 115 RTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRE 174
+TL + L Y+ E LQ+ F K I ++ ++Q+GKS+GY F++F S+ED+K+
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNS 542
Query: 175 LGVRKGIEIMGRTSIVDIERGR 196
R EI GR ++++ R
Sbjct: 543 CNKR---EIEGRAIRLELQGPR 561
>CE24459 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 49.7 bits (117), Expect = 5e-06
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 49 YALTGVSAVLQHVSEYKKATHPVSENQHLKVYDEAMNESHKEQEELMKKI-----QEWHP 103
Y V+A+ Q + + + + + K + + KEQ+ K + Q W
Sbjct: 134 YETPAVNAIPQELLRTQALQSDI-DKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWED 192
Query: 104 ESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRD-QDGKSRGYGFVQF 162
S A + +R +F G L V + L K+F KY + ++VR+ + KS+GYGFV F
Sbjct: 193 PSLAEWDENDFR-VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSF 251
Query: 163 TSYEDSKQCFREL 175
ED + RE+
Sbjct: 252 RDSEDYVRAMREM 264
>7303943 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)
Length = 165
Score = 49.7 bits (117), Expect = 5e-06
Identities = 35/111 (31%), Positives = 50/111 (44%), Gaps = 9/111 (8%)
Query: 87 SHKEQEELMKKIQEWHPESDANISSDPYRT-----LFVGRLHYAVDEVELQKSFVKYGDI 141
S E + + E D + P R+ LFV +H E E+Q+ F YG+I
Sbjct: 40 SDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEI 99
Query: 142 ESCRIVRD-QDGKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGRTSIVD 191
++ + D + G S+GY V+ YE KQ G EIMG+T VD
Sbjct: 100 KNIHLNLDRRTGFSKGYALVE---YETHKQALAAKEALNGAEIMGQTIQVD 147
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 49.7 bits (117), Expect = 5e-06
Identities = 29/87 (33%), Positives = 48/87 (54%), Gaps = 4/87 (4%)
Query: 106 DANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTS 164
+ +I R++FVG + Y E +L++ F + G + S ++V D++ GK +G+GF ++
Sbjct: 7 EQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKD 66
Query: 165 YEDSKQCFRELGVRKGIEIMGRTSIVD 191
E + R L G EI GRT VD
Sbjct: 67 QETALSAMRNL---NGYEIGGRTLRVD 90
>7291799 [R] KOG0118 FOG: RRM domain
Length = 307
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 105 SDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTS 164
S N S D + +++ L ++D + +F +G+I +C + +D+DG SRGYGFV F S
Sbjct: 104 SGGNSSPDSGK-IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDS 162
Query: 165 YEDSKQCFREL 175
E ++ ++
Sbjct: 163 EEAARAAIEKV 173
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 49.3 bits (116), Expect = 7e-06
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 104 ESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFT 163
E++ + + +++ +D+ L+ F KYG S +++ D GKS+G+GFV F
Sbjct: 296 EAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 355
Query: 164 SYEDSKQCFRELGVR 178
S+E +K+ E+ R
Sbjct: 356 SHEAAKKAVEEMNGR 370
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 49.3 bits (116), Expect = 7e-06
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 115 RTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRE 174
+TL + L Y+ E LQ+ F K I ++ ++Q+GKS+GY F++F S+ED+K+
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNS 542
Query: 175 LGVRKGIEIMGRTSIVDIERGR 196
R EI GR ++++ R
Sbjct: 543 CNKR---EIEGRAIRLELQGPR 561
>At3g18610 [K] KOG4210 Nuclear localization sequence binding protein
Length = 636
Score = 49.3 bits (116), Expect = 7e-06
Identities = 29/112 (25%), Positives = 55/112 (48%), Gaps = 6/112 (5%)
Query: 86 ESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCR 145
+S E + +K P++ N + +TLF G L Y + +++ F + G++ R
Sbjct: 355 DSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVR 414
Query: 146 IVRDQDGKSRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGRTSIVDI--ERG 195
+ DG +GYG ++F S E++++ G ++GR +D+ ERG
Sbjct: 415 LSSFDDGSFKGYGHIEFASPEEAQKALE----MNGKLLLGRDVRLDLANERG 462
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 49.3 bits (116), Expect = 7e-06
Identities = 26/79 (32%), Positives = 48/79 (59%), Gaps = 3/79 (3%)
Query: 114 YRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFR 173
+ L+V L +++E L++ F YG I S +++ ++G+S+G+GFV F++ E+SKQ R
Sbjct: 303 WSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKR 362
Query: 174 ELGVRKGIEIMGRTSIVDI 192
L G + G+ +V +
Sbjct: 363 YL---NGFLVDGKPIVVRV 378
>At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein
Length = 849
Score = 49.3 bits (116), Expect = 7e-06
Identities = 27/94 (28%), Positives = 51/94 (53%), Gaps = 4/94 (4%)
Query: 81 DEAMNESHKEQEELMKKIQEWHPESDANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGD 140
+E +N +K E+ + I +D +I+ R +FV + + L+ +F YG+
Sbjct: 377 EELVNLIYKTAEKGSRLISAILESADRDIAQ---RNIFVRGFGWDTTQENLKTAFESYGE 433
Query: 141 IESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFR 173
IE C +V D+D G+ +GYGFV F + + +++ +
Sbjct: 434 IEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>SPAC22E12.02 [R] KOG0226 RNA-binding proteins
Length = 219
Score = 48.9 bits (115), Expect = 9e-06
Identities = 22/58 (37%), Positives = 37/58 (62%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRE 174
LFVG L V++ L ++F +Y + ++VRD++GK+RG+GFV F + + +RE
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 48.9 bits (115), Expect = 9e-06
Identities = 28/76 (36%), Positives = 43/76 (55%), Gaps = 4/76 (5%)
Query: 117 LFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQD-GKSRGYGFVQFTSYEDSKQCFREL 175
LFVG L + +E L++ F KYG I +V+D++ +SRG+GFV F + +D+K +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 176 GVRKGIEIMGRTSIVD 191
G + GR VD
Sbjct: 68 ---NGKSVDGRQIRVD 80
>Hs13123778 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 486
Score = 48.9 bits (115), Expect = 9e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 115 RTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSYEDSKQCFRE 174
R LFVG L+ E ++++ F +G+IE C I+R DG S+G FV+++S+ +++
Sbjct: 152 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINA 211
Query: 175 L 175
L
Sbjct: 212 L 212
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 48.9 bits (115), Expect = 9e-06
Identities = 26/80 (32%), Positives = 44/80 (54%), Gaps = 1/80 (1%)
Query: 106 DANISSDPYRTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTSY 165
D N + + ++V L + E EL+K+F K+G I S ++RDQ G SR +GFV F
Sbjct: 220 DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECT 279
Query: 166 EDSKQCFREL-GVRKGIEIM 184
E + ++ G+ G +++
Sbjct: 280 EAAASAVEKMNGISLGDDVL 299
>7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 1112
Score = 48.9 bits (115), Expect = 9e-06
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 115 RTLFVGRLHYAVDEVELQKSFVKYGDIESCRIVRDQDGKSRGYGFVQFTS 164
R LFVG L+ ++E +++K F +G IE C ++RDQ+G+S+G FV F +
Sbjct: 445 RKLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFAT 494
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,954,164
Number of Sequences: 60738
Number of extensions: 683439
Number of successful extensions: 3469
Number of sequences better than 1.0e-05: 63
Number of HSP's better than 0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3329
Number of HSP's gapped (non-prelim): 125
length of query: 301
length of database: 30,389,216
effective HSP length: 106
effective length of query: 195
effective length of database: 23,950,988
effective search space: 4670442660
effective search space used: 4670442660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)