ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2024 suspect: Pn K KOG4210 Transcription Nuclear localization sequence binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII2024 718728 717238 -497 
         (497 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR159c [K] KOG4210 Nuclear localization sequence binding protein      57   6e-08
At5g55660 [B] KOG2266 Chromatin-associated protein Dek and relat...    52   2e-06
CE24463 [B] KOG1911 Heterochromatin-associated protein HP1 and r...    51   5e-06
7295248 [S] KOG4023 Uncharacterized conserved protein                  51   5e-06

>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
          Length = 414

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 322 SQAPSEIKTDTISKKSEGSDKTKGVTETTRDDTKEPIKEIPSKDDDENSAPLSVGLSQET 381
           S++ SE  + + S  SE S  +   +E+  +  KE  K+  S   D +S         E 
Sbjct: 49  SESESESSSSSSSSDSESSSSSSSDSESEAETKKEESKDSSSSSSDSSS--------DEE 100

Query: 382 KEDGKEEVKPELSEQSTKGESKTPETKERDTEKVEDVQETQEAEKIEQQENGEETQEAEK 441
           +E+ KEE K E S++S+  +S +  + + ++EK E   + +++E  E++E+ E + + +K
Sbjct: 101 EEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQK 160

Query: 442 TNGSIE 447
              + E
Sbjct: 161 NEETEE 166


>At5g55660 [B] KOG2266 Chromatin-associated protein Dek and related proteins
           contains SAP DNA binding domain
          Length = 778

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 51/242 (21%), Positives = 110/242 (45%), Gaps = 24/242 (9%)

Query: 233 DEIVKFKTTGIAGQHVTRASSVPSLIVKTTEPETYG---KLKWTMLKDFIKSNCPELFEN 289
           DE+ K   T + G    +A+ + + I++ +  +  G   K K  + + F K N  +L E 
Sbjct: 380 DEVFKQLHTILFGGKRVKATQLKAHILRFSGYKWQGDEEKAKLKVKEKFEKINKEKLLEF 439

Query: 290 TSSFEFYVGVYESGELDVEIQLVQ-----GENEEVIVSQAPSEIKTDTISKKSE---GSD 341
              F+  V    + + D+  +LV+         +V+V++    +K     KKS    GS 
Sbjct: 440 CDLFDISVAKATTKKEDIVTKLVEFLEKPHATTDVLVNEKEKGVKRKRTPKKSSPAAGSS 499

Query: 342 KTKGVTET---TRDDTKEPIKEIPSKDDDENSAPLSVGLSQETKEDGKEEVKPELSEQST 398
            +K   ++   T + T+   K +   DD+           +E ++D +EE + E+ E+  
Sbjct: 500 SSKRSAKSQKKTEEATRTNKKSVAHSDDESE---------EEKEDDEEEEKEQEVEEEEE 550

Query: 399 KGESKTPETKERDTEKVEDVQETQEAEKIEQQENGEETQEAEKTNGSIEKYMVKATNYEA 458
           + E+  P+  E +  ++ + +E  E+E+ E +E  ++ +   +T+   ++   K+ + + 
Sbjct: 551 ENENGIPDKSEDEAPQLSESEENVESEE-ESEEETKKKKRGSRTSSDKKESAGKSRSKKT 609

Query: 459 VV 460
            V
Sbjct: 610 AV 611


>CE24463 [B] KOG1911 Heterochromatin-associated protein HP1 and related
           CHROMO domain proteins
          Length = 679

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 14/147 (9%)

Query: 313 QGENEEVIVSQAPSEIKTDTISKKSEGSDKTKGVTETTRDDTKEPIKEIPSKDDDE-NSA 371
           + +NEE  V ++P   K  T  +KS      K  +E + D+  E +++ P K+D     +
Sbjct: 535 ESDNEEEDVEESP---KKRTSPRKSSKKRAAKEESEESSDNEVEEVEDSPKKNDKTLRKS 591

Query: 372 PLSVGLSQETKEDGKEEVKPELSEQSTKGESKTPETKERDTEKVEDVQETQEAEKIEQQE 431
           P       E++E    E + E+ E+S K + KTP    + +   E+ +E+ +        
Sbjct: 592 PRKPAAKVESEESFGNEEEEEV-EESPKKKGKTPRKSSKKSAAKEESEESSD-------- 642

Query: 432 NGEETQEAEKTNGSIEKYMVKATNYEA 458
             EE ++AE+TNGS  +   K+   E+
Sbjct: 643 -DEEEEQAEETNGSHTESPTKSKTDES 668


>7295248 [S] KOG4023 Uncharacterized conserved protein
          Length = 476

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 42/145 (28%), Positives = 72/145 (48%), Gaps = 20/145 (13%)

Query: 313 QGENEEVIVSQAPSEIKTDTISKKSEGSDKTKGVTETTRDDTKEPIKEIPSKDDDE--NS 370
           +GE+E+    +  +E KT+T   +  G  KT+  T     +T+E  +E+ +K+  E  ++
Sbjct: 159 KGEDEDA--DEENAEQKTET---EESGDKKTEEKTTDAEGETQEKSEEVDTKEKSEVEST 213

Query: 371 APLSVGLSQETKEDGKEEVKPELSEQSTKGESKTPETKERDTEKVEDVQETQEAEKIEQQ 430
               VG S++ K+D  E+     SE     +  + + K+  TEK EDV++        + 
Sbjct: 214 KDDEVGKSEDVKDDEDEK-----SEIVKDDKENSQDVKDDKTEKSEDVKD--------KL 260

Query: 431 ENGEETQEAEKTNGSIEKYMVKATN 455
           E  EET E  +   + EK  V+ATN
Sbjct: 261 EGSEETAETSEDADTTEKPDVEATN 285


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.130    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,029,129
Number of Sequences: 60738
Number of extensions: 1091524
Number of successful extensions: 9290
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9188
Number of HSP's gapped (non-prelim): 40
length of query: 497
length of database: 30,389,216
effective HSP length: 111
effective length of query: 386
effective length of database: 23,647,298
effective search space: 9127857028
effective search space used: 9127857028
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)