ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII2052  suspect: LH   J     KOG1790  Translation, ribosomal structure and biogenesis                60s ribosomal protein L34

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII2052 727122 725566 -519 
         (519 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YER056c [J] KOG1790 60s ribosomal protein L34                         598   e-171

>YER056c [J] KOG1790 60s ribosomal protein L34
          Length = 533

 Score =  598 bits (1542), Expect = e-171
 Identities = 293/478 (61%), Positives = 348/478 (72%), Gaps = 1/478 (0%)

Query: 43  KLSWVDHLASKLHAETKGIEPITXXXXXXXXILNAASMWLSANLVIAAFSLGCIGTSVFG 102
           KLSW     + L+AETKG+EP+T        ILNAASMW SAN+VIA+++LG +G  VFG
Sbjct: 56  KLSWFHKFFASLNAETKGVEPVTEDEKTDDSILNAASMWFSANMVIASYALGALGPMVFG 115

Query: 103 LNFGEAVLVIVFFSFLGLLPVAFFSVFGAELGLRQLVLSRFLLGNVTARIFCFINIIACV 162
           LNFG++VLVI+FF+ +GL+ VAFFSVFGAELGLRQ++LSR+L+GNVTARIF  IN+IACV
Sbjct: 116 LNFGQSVLVIIFFNIMGLIFVAFFSVFGAELGLRQMILSRYLVGNVTARIFSLINVIACV 175

Query: 163 GWGAVNTIASASLLHIVNP-SGPDCPPWAGCLXXXXXXXXXXXXXYRVIHAYEKWSWVPN 221
           GWG VNT  SA LL++VN  SG  CP WAGCL             Y VIHAYEKWSWVPN
Sbjct: 176 GWGIVNTSVSAQLLNMVNEGSGHVCPIWAGCLIIIGGTVLVTFFGYSVIHAYEKWSWVPN 235

Query: 222 FAVFLVIIARLAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGWTTYASDYTVYMPRT 281
           FAVFLVIIA+L++                             A GWTTYA+DYTVYMP++
Sbjct: 236 FAVFLVIIAQLSRSGKFKGGEWVGGATTAGSVLSFGSSIFGFAAGWTTYAADYTVYMPKS 295

Query: 282 TNKKKVFAAIVLGLAFPLCFSMILGAAAVTGTRTNERWAELYDKYSVGGLCYAILIEDSL 341
           TNK K+F ++V GLAFPL F+MILGAA+      +  W   YDK ++GG+ YAIL+ +SL
Sbjct: 296 TNKYKIFFSLVAGLAFPLFFTMILGAASAMAALNDPTWKAYYDKNAMGGVIYAILVPNSL 355

Query: 342 WGFGSFCCVVLALSTISNNIPNMYSIALGTQALFEPLAKVPRVAWTIIGNLVTLAIAIPA 401
            GFG FCCV+LALSTI+NNIPNMY++AL  QAL+ PLAK+PRV WT+ GN  TL I+IPA
Sbjct: 356 NGFGQFCCVLLALSTIANNIPNMYTVALSAQALWAPLAKIPRVVWTMAGNAATLGISIPA 415

Query: 402 YYKFETFMTTFMDSIGYYLAIYSAIALSEHFIYRGGFKGYNVDDWDRWDKLPIGYAGTFA 461
            Y F+ FM  FMDSIGYYLAIY AI+ SEHF YR  F  YN+DDWD W+ LPIG AGT A
Sbjct: 416 TYYFDGFMENFMDSIGYYLAIYIAISCSEHFFYRRSFSAYNIDDWDNWEHLPIGIAGTAA 475

Query: 462 LFIGAFGVAFGMNQIYWQGQIGRLIGENGGDIGFELGAGFAFITYNIFRPLEKKYVGR 519
           L +GAFGVA GM Q YW G+IGRLIG+ GGDIGFELGA +AFI YNI RPLE KY GR
Sbjct: 476 LIVGAFGVALGMCQTYWVGEIGRLIGKYGGDIGFELGASWAFIIYNILRPLELKYFGR 533


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.326    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,884,991
Number of Sequences: 60738
Number of extensions: 955573
Number of successful extensions: 2432
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2429
Number of HSP's gapped (non-prelim): 1
length of query: 519
length of database: 30,389,216
effective HSP length: 111
effective length of query: 408
effective length of database: 23,647,298
effective search space: 9648097584
effective search space used: 9648097584
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)