ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2060 good R KOG1674 General function prediction only Cyclin
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2060 730225 728999 -409
(409 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER059w [R] KOG1674 Cyclin 248 2e-65
YIL050w [R] KOG1674 Cyclin 216 4e-56
SPBC20F10.10 [R] KOG1674 Cyclin 146 5e-35
At3g05330 [R] KOG1674 Cyclin 84 4e-16
At2g44740 [R] KOG1674 Cyclin 84 4e-16
At5g07450 [R] KOG1674 Cyclin 82 2e-15
At3g21870 [R] KOG1674 Cyclin 82 2e-15
At5g61650 [R] KOG1674 Cyclin 79 1e-14
At3g60550 [R] KOG1674 Cyclin 74 4e-13
At2g45080 [R] KOG1674 Cyclin 74 4e-13
At3g63120 [R] KOG1674 Cyclin 64 4e-10
YOL001w [R] KOG1674 Cyclin 59 2e-08
YGL134w [R] KOG1674 Cyclin 52 1e-06
>YER059w [R] KOG1674 Cyclin
Length = 420
Score = 248 bits (632), Expect = 2e-65
Identities = 147/278 (52%), Positives = 178/278 (63%), Gaps = 46/278 (16%)
Query: 166 STSQPDHHSNDETQHSLNNNNHHMDIATFPTYKLLDMLTGLLTKIIKSNDSLGST-PNF- 223
S++Q D + +T +S + ++IA FPT KLL MLT LLTKIIKSND +T P+
Sbjct: 141 SSTQEDKILDGDTSNSQVTPS--LNIAEFPTDKLLKMLTALLTKIIKSNDRTAATNPSLT 198
Query: 224 -ETSQGKNIPL-------MREILSFRGKQVPGITLKQYFQRIQKYCPTTNDVLLSLLVHF 275
E G+ + L + +L FRGK VP I L QYFQRIQKYCPTTNDV LSLLV+F
Sbjct: 199 QEIENGRCLALSDNEKKYLSPVLGFRGKHVPQIGLDQYFQRIQKYCPTTNDVFLSLLVYF 258
Query: 276 DRIAKKCNAI--------AQEYMVSVVSTPDKTTASLAHQSS------------------ 309
DRI+K+CN++ A+ S S+ DK S+
Sbjct: 259 DRISKRCNSVTTTPKTNTAKHESPSNESSLDKANRGADKMSACNSNENNENDDSDDENTG 318
Query: 310 --------PQLFVMDSHNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHLEL 361
PQ+FVMDSHNIHRLIIA ITVSTKF+SDFFYSNSRY+RVGGISLQELNHLEL
Sbjct: 319 VQRDSRAHPQMFVMDSHNIHRLIIAGITVSTKFLSDFFYSNSRYSRVGGISLQELNHLEL 378
Query: 362 QFLILCDFRLIISVEELQRYADLLYKFWDKEKHLYQSV 399
QFL+LCDF L+ISV ELQRYADLLY+FW+ K Q++
Sbjct: 379 QFLVLCDFELLISVNELQRYADLLYRFWNNAKAQSQAL 416
>YIL050w [R] KOG1674 Cyclin
Length = 285
Score = 216 bits (551), Expect = 4e-56
Identities = 120/245 (48%), Positives = 159/245 (63%), Gaps = 29/245 (11%)
Query: 148 PVKAVSELRIDDEQTGSSSTSQPDHHSNDETQHSLNNNNHHMDIATFPTYKLLDMLTGLL 207
PV+AV + + +T S D +N++T + N IA FPT +L+ M++ LL
Sbjct: 70 PVQAVKKSLESEAKTHSL-----DEETNEQTDVKILN------IADFPTDELILMISALL 118
Query: 208 TKIIKSNDSLGSTPNFETSQGKNIPLMREILSFRGKQVPGITLKQYFQRIQKYCPTTNDV 267
+II +ND + S L+ IL+F GK VP I + QY +RIQKYCPTTND+
Sbjct: 119 NRIITANDETTDVSQ-QVSDETEDELLTPILAFYGKNVPEIAVVQYLERIQKYCPTTNDI 177
Query: 268 LLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDKTTASLAHQSSPQLFVMDSHNIHRLIIAA 327
LSLLV+FDRI+K ++ + + QLFVMDS NIHRL+I
Sbjct: 178 FLSLLVYFDRISKNYGHSSER-----------------NGCAKQLFVMDSGNIHRLLITG 220
Query: 328 ITVSTKFISDFFYSNSRYARVGGISLQELNHLELQFLILCDFRLIISVEELQRYADLLYK 387
+T+ TKF+SDFFYSNSRYA+VGGISLQELNHLELQFLILCDF+L++SVEE+Q+YA+LLYK
Sbjct: 221 VTICTKFLSDFFYSNSRYAKVGGISLQELNHLELQFLILCDFKLLVSVEEMQKYANLLYK 280
Query: 388 FWDKE 392
FW+ +
Sbjct: 281 FWNDQ 285
>SPBC20F10.10 [R] KOG1674 Cyclin
Length = 243
Score = 146 bits (369), Expect = 5e-35
Identities = 81/219 (36%), Positives = 119/219 (53%), Gaps = 27/219 (12%)
Query: 178 TQHSLNNNNHHMDIATFPTYKLLDMLTGLLTKIIKSNDSLGSTPNFETSQGKNIPLMREI 237
++ + + + H+++++F KLL+M++ L+++ + NDS + L
Sbjct: 10 SKDNTDEDEEHLELSSFNQEKLLEMISVFLSRLTRLNDSKQEATESDQIPLSPTSLKNPC 69
Query: 238 LSFRGKQVPGITLKQYFQRIQKYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTP 297
L F K VP I+++ Y RI KYCP TNDV LS+L++ DRI
Sbjct: 70 LIFSAKNVPSISIQAYLTRILKYCPATNDVFLSVLIYLDRIV------------------ 111
Query: 298 DKTTASLAHQSSPQLFVMDSHNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELN 357
H +F+ +S NIHR +IA T ++KF SD FY+NSRYA+VGGI L ELN
Sbjct: 112 --------HHFHFTVFI-NSFNIHRFLIAGFTAASKFFSDVFYTNSRYAKVGGIPLHELN 162
Query: 358 HLELQFLILCDFRLIISVEELQRYADLLYKFWDKEKHLY 396
HLEL F + DF L IS+E+LQ Y DLL ++ + Y
Sbjct: 163 HLELSFFVFNDFNLFISLEDLQAYGDLLLSWYRQNGQNY 201
>At3g05330 [R] KOG1674 Cyclin
Length = 588
Score = 84.0 bits (206), Expect = 4e-16
Identities = 50/182 (27%), Positives = 90/182 (48%), Gaps = 26/182 (14%)
Query: 208 TKIIKSNDSLGSTPNFETSQGKNIPLMR--EILSFRGKQVPGITLKQYFQRIQKYCPTTN 265
T++ + L + F S + MR EI F G + P +++ +Y +RI +Y
Sbjct: 407 TRVCNKSQKLSTAAKFRRSFSPSRLAMRADEITMFHGSKAPSLSIYRYTERIHRYA---- 462
Query: 266 DVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDKTTASLAHQSSPQLFVMDSHNIHRLII 325
+ + C A Y++ + P+ T+ + + S N+HRL+I
Sbjct: 463 -----------QCSPVCFVAAFAYILRYLQRPEATSTARR---------LTSLNVHRLLI 502
Query: 326 AAITVSTKFISDFFYSNSRYARVGGISLQELNHLELQFLILCDFRLIISVEELQRYADLL 385
++ V+ KF+ Y+N+ YA++GG+S +E+N LE FL+ DFRL I+ E +++ +L
Sbjct: 503 TSLLVAAKFLERQCYNNAYYAKIGGVSTEEMNRLERTFLVDVDFRLYITTETFEKHCLML 562
Query: 386 YK 387
K
Sbjct: 563 QK 564
>At2g44740 [R] KOG1674 Cyclin
Length = 202
Score = 84.0 bits (206), Expect = 4e-16
Identities = 62/214 (28%), Positives = 99/214 (45%), Gaps = 45/214 (21%)
Query: 198 KLLDMLTGLLTKIIKSNDSLGSTPNFETSQGKNIPLMREILSFRGKQVPGITLKQYFQRI 257
KL+ L+ LL ++ +SND +Q + + + F G P IT++ Y +RI
Sbjct: 12 KLIAFLSSLLERVAESNDLTRRV----ATQSQRVSV------FHGLSRPTITIQSYLERI 61
Query: 258 QKYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDKTTASLAHQSSPQLFVMDS 317
KY + + V+ DR + P L + +S
Sbjct: 62 FKYANCSPSCFVVAYVYLDRFTHR---------------------------QPSLPI-NS 93
Query: 318 HNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHLELQFLILCDFRLIISVEE 377
N+HRL+I ++ V+ KF+ D +Y+N+ YA+VGGIS +E+N LEL FL F L ++
Sbjct: 94 FNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNT 153
Query: 378 LQRYADLLYKFWDKEKHLYQSVS---QPTNSSLI 408
Y + + KE L Q +S P++ SLI
Sbjct: 154 FNAY----FSYLQKEMTLLQPLSLVVVPSSRSLI 183
>At5g07450 [R] KOG1674 Cyclin
Length = 216
Score = 81.6 bits (200), Expect = 2e-15
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 38/189 (20%)
Query: 199 LLDMLTGLLTKIIKSNDSLGSTPNFETSQGKNIPLMREILSFRGKQVPGITLKQYFQRIQ 258
++ ++ LL ++ ++ND L S P E + I +F P I+++ Y +RI
Sbjct: 23 VITAMSSLLQRVSETNDDL-SRPFREH---------KRISAFNAVTKPSISIRSYMERIF 72
Query: 259 KYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDKTTASLAHQSSPQLFVMDSH 318
KY ++ + ++ DR +K L +DS
Sbjct: 73 KYADCSDSCYIVAYIYLDRFIQK----------------------------QPLLPIDSS 104
Query: 319 NIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHLELQFLILCDFRLIISVEEL 378
N+HRLII ++ VS KF+ D Y+N+ YA+VGGI+ +E+N LEL FL F+L +++
Sbjct: 105 NVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTY 164
Query: 379 QRYADLLYK 387
Y L +
Sbjct: 165 NDYCSSLQR 173
>At3g21870 [R] KOG1674 Cyclin
Length = 210
Score = 81.6 bits (200), Expect = 2e-15
Identities = 62/218 (28%), Positives = 103/218 (46%), Gaps = 48/218 (22%)
Query: 196 TYKLLDMLTGLLTKIIKSNDSLGS-TPNFETSQGKNIPLMREILSFRGKQVPGITLKQYF 254
T ++L +++ ++ K++ N+ L T F GK++ +F G + P I++ +Y
Sbjct: 24 TPRVLTIISHVMEKLVARNEWLAKQTKGF----GKSLE------AFHGVRAPSISIAKYL 73
Query: 255 QRIQKYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDKTTASLAHQSSPQLFV 314
+RI KY + + V+ DR+A K H S +
Sbjct: 74 ERIYKYTKCSPACFVVGYVYIDRLAHK------------------------HPGS----L 105
Query: 315 MDSHNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHLELQFLILCDFRLIIS 374
+ S N+HRL++ + ++ K + D Y+N YARVGG+S +LN +EL+ L L DFR+ +S
Sbjct: 106 VVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVSNADLNKMELELLFLLDFRVTVS 165
Query: 375 VEELQRYADLLYKFWDKEKHLYQSVS-----QPTNSSL 407
+ Y L +KE L +VS QP SL
Sbjct: 166 FRVFESYCFHL----EKEMQLNDAVSSLKDIQPMQESL 199
>At5g61650 [R] KOG1674 Cyclin
Length = 219
Score = 79.0 bits (193), Expect = 1e-14
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 44/190 (23%)
Query: 199 LLDMLTGLLTKIIKSNDSLGSTPNFETSQGKNIPLMREILSFRGKQVPGITLKQYFQRIQ 258
+L ++ LL ++ ++ND+L ++ SF G P I+++ Y +RI
Sbjct: 25 VLTAMSYLLQRVSETNDNLSQK--------------QKPSSFTGVTKPSISIRSYLERIF 70
Query: 259 KYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDKTTASLAHQSSPQLFV-MDS 317
+Y + + ++ DR KK Q F+ ++S
Sbjct: 71 EYANCSYSCYIVAYIYLDRFVKK-----------------------------QPFLPINS 101
Query: 318 HNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHLELQFLILCDFRLIISVEE 377
N+HRLII ++ VS KF+ D Y+N YA+VGGIS +E+N LEL FL F L ++V
Sbjct: 102 FNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGISREEMNMLELDFLFGIGFELNVTVST 161
Query: 378 LQRYADLLYK 387
Y L +
Sbjct: 162 FNNYCCFLQR 171
>At3g60550 [R] KOG1674 Cyclin
Length = 230
Score = 73.9 bits (180), Expect = 4e-13
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 42/218 (19%)
Query: 164 SSSTSQPDHHSNDETQHSLNNNNHHMDIATFPTYKLLDMLTGLLTKIIKSNDSLGSTPNF 223
+S T P +D +S NN+ T ++ +L+ L+ + + N+ +
Sbjct: 5 NSLTISPRKLRSDLYSYSYQNNSK--------TPLVISVLSSLIDRTLTRNERISRRALP 56
Query: 224 ETSQGKNIPLMREILSFRGKQVPGITLKQYFQRIQKYCPTTNDVLLSLLVHFDRIAKKCN 283
+ G + F +++P +T++ Y RI +Y V + V+ DR
Sbjct: 57 SSGAGGKTQI------FDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFC---- 106
Query: 284 AIAQEYMVSVVSTPDKTTASLAHQSSPQLFVMDSHNIHRLIIAAITVSTKFISDFFYSNS 343
Q++P F + N+HRL+I I +++K++ D Y NS
Sbjct: 107 -----------------------QTNPG-FRISLTNVHRLLITTIMIASKYVEDLNYRNS 142
Query: 344 RYARVGGISLQELNHLELQFLILCDFRLIISVEELQRY 381
+A+VGG+ ++LN LEL+FL L F+L ++V + Y
Sbjct: 143 YFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESY 180
>At2g45080 [R] KOG1674 Cyclin
Length = 222
Score = 73.9 bits (180), Expect = 4e-13
Identities = 40/142 (28%), Positives = 71/142 (49%), Gaps = 28/142 (19%)
Query: 240 FRGKQVPGITLKQYFQRIQKYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDK 299
F +++P +T++ Y +RI +Y V + V+ DR +
Sbjct: 61 FDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQ------------------- 101
Query: 300 TTASLAHQSSPQLFVMDSHNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHL 359
+ Q F + N+HRL+I I +++K++ D Y NS +A+VGG+ ++LN+L
Sbjct: 102 ---------NNQGFRISLTNVHRLLITTIMIASKYVEDMNYKNSYFAKVGGLETEDLNNL 152
Query: 360 ELQFLILCDFRLIISVEELQRY 381
EL+FL L F+L ++V + Y
Sbjct: 153 ELEFLFLMGFKLHVNVSVFESY 174
>At3g63120 [R] KOG1674 Cyclin
Length = 221
Score = 63.9 bits (154), Expect = 4e-10
Identities = 38/148 (25%), Positives = 64/148 (42%), Gaps = 29/148 (19%)
Query: 240 FRGKQVPGITLKQYFQRIQKYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDK 299
F G+ P I++ Y RI KY + + ++ D K A+ +
Sbjct: 65 FDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRALLKPL---------- 114
Query: 300 TTASLAHQSSPQLFVMDSHNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHL 359
N+HRLII + ++ K D +++N+ YARVGG++ +ELN L
Sbjct: 115 -------------------NVHRLIITTVMLAAKVFDDRYFNNAYYARVGGVTTRELNRL 155
Query: 360 ELQFLILCDFRLIISVEELQRYADLLYK 387
E++ L DF+L + + + L K
Sbjct: 156 EMELLFTLDFKLQVDPQTFHTHCCQLEK 183
>YOL001w [R] KOG1674 Cyclin
Length = 293
Score = 58.5 bits (140), Expect = 2e-08
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 28/133 (21%)
Query: 240 FRGKQVPGITLKQYFQRIQKYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDK 299
+ K P I++ YF R+ K+ + VL++ L + D + PD
Sbjct: 67 YHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQ--------------TVYPD- 111
Query: 300 TTASLAHQSSPQLFVMDSHNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHL 359
F ++S HR ++ A TV+TK + D F +N+ YA+VGG+ ELN L
Sbjct: 112 -------------FTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNIL 158
Query: 360 ELQFLILCDFRLI 372
E FL ++R+I
Sbjct: 159 ENDFLKRVNYRII 171
>YGL134w [R] KOG1674 Cyclin
Length = 433
Score = 52.4 bits (124), Expect = 1e-06
Identities = 38/129 (29%), Positives = 61/129 (46%), Gaps = 6/129 (4%)
Query: 251 KQYFQRIQKYCPTTNDVLLSLLVHFDRIAKKCNAIAQEYMVSVVSTPDKTTASLAHQSSP 310
K+Y K PT LS RI KC Y+V+ +
Sbjct: 295 KEYSNFYMKSKPT-----LSSADFLKRIQDKCEYQPTVYLVATFLIDTLFLTRDGNNILQ 349
Query: 311 QLFVMDSHNIHRLIIAAITVSTKFISDFFYSNSRYARVGGISLQELNHLELQFLI-LCDF 369
+ +HR+IIAA+ +STK + DF +S+ +++V GIS + L LE+ LI +C+
Sbjct: 350 LKLNLQEKEVHRMIIAAVRLSTKLLEDFVHSHEYFSKVCGISKRLLTKLEVSLLICVCNT 409
Query: 370 RLIISVEEL 378
+L++S +L
Sbjct: 410 KLMVSNRKL 418
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,545,483
Number of Sequences: 60738
Number of extensions: 817014
Number of successful extensions: 2680
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2653
Number of HSP's gapped (non-prelim): 14
length of query: 409
length of database: 30,389,216
effective HSP length: 109
effective length of query: 300
effective length of database: 23,768,774
effective search space: 7130632200
effective search space used: 7130632200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)