ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2071.1 good J KOG1790 Translation, ribosomal structure and biogenesis 60s ribosomal protein L34
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2071.1 733532 733819 96
(96 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL052c [J] KOG1790 60s ribosomal protein L34 129 7e-31
YER056c-a [J] KOG1790 60s ribosomal protein L34 129 9e-31
SPAC23A1.08c [J] KOG1790 60s ribosomal protein L34 110 3e-25
SPCC1322.15 [J] KOG1790 60s ribosomal protein L34 106 5e-24
CE26911 [J] KOG1790 60s ribosomal protein L34 86 1e-17
At1g69620 [J] KOG1790 60s ribosomal protein L34 83 6e-17
At1g26880 [J] KOG1790 60s ribosomal protein L34 83 6e-17
At3g28900 [J] KOG1790 60s ribosomal protein L34 79 1e-15
7299171 [J] KOG1790 60s ribosomal protein L34 72 1e-13
7301438_1 [J] KOG1790 60s ribosomal protein L34 72 2e-13
Hs16117787 [J] KOG1790 60s ribosomal protein L34 71 3e-13
Hs18570634 [J] KOG1790 60s ribosomal protein L34 66 9e-12
Hs17483374 [R] KOG1721 FOG: Zn-finger 62 2e-10
Hs17483362 [J] KOG1790 60s ribosomal protein L34 62 2e-10
Hs20556223 [J] KOG1790 60s ribosomal protein L34 56 7e-09
ECU03g0710 [J] KOG1790 60s ribosomal protein L34 45 1e-05
7297848 [K] KOG1074 Transcriptional repressor SALM 30 0.44
Hs22042308 [J] KOG1790 60s ribosomal protein L34 29 1.3
CE23702 [T] KOG4721 Serine/threonine protein kinase contains leu... 28 1.7
7304169 [N] KOG4242 Predicted myosin-I-binding protein 28 2.2
CE27279 [T] KOG0229 Phosphatidylinositol-4-phosphate 5-kinase 27 6.3
At4g12570 [O] KOG0940 Ubiquitin protein ligase RSP5/NEDD4 26 8.2
>YIL052c [J] KOG1790 60s ribosomal protein L34
Length = 121
Score = 129 bits (324), Expect = 7e-31
Identities = 63/76 (82%), Positives = 70/76 (91%)
Query: 1 MRSQHVKKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERI 60
+R+QHVKKLATRPKCGD G LQG+STLRPRQYATVS+T KTVSRAYGGS+ AN VKERI
Sbjct: 30 LRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERI 89
Query: 61 VRAFLIEEQKIVKRVI 76
VRAFLIEEQKIVK+V+
Sbjct: 90 VRAFLIEEQKIVKKVV 105
>YER056c-a [J] KOG1790 60s ribosomal protein L34
Length = 121
Score = 129 bits (323), Expect = 9e-31
Identities = 62/76 (81%), Positives = 70/76 (91%)
Query: 1 MRSQHVKKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERI 60
+R+QHVKKLATRPKCGD G LQG+STLRPRQYATVS+T KTVSRAYGGS+ AN VKERI
Sbjct: 30 LRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERI 89
Query: 61 VRAFLIEEQKIVKRVI 76
+RAFLIEEQKIVK+V+
Sbjct: 90 IRAFLIEEQKIVKKVV 105
>SPAC23A1.08c [J] KOG1790 60s ribosomal protein L34
Length = 112
Score = 110 bits (275), Expect = 3e-25
Identities = 53/74 (71%), Positives = 62/74 (83%)
Query: 1 MRSQHVKKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERI 60
+R H+KKL T P+CGDTGVPLQG+ LRPR++A +S KKTV RAYGG SANAVK+RI
Sbjct: 30 IRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNKKTVQRAYGGCLSANAVKDRI 89
Query: 61 VRAFLIEEQKIVKR 74
VRAFLIEEQKIVK+
Sbjct: 90 VRAFLIEEQKIVKQ 103
>SPCC1322.15 [J] KOG1790 60s ribosomal protein L34
Length = 111
Score = 106 bits (265), Expect = 5e-24
Identities = 51/74 (68%), Positives = 61/74 (81%)
Query: 1 MRSQHVKKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERI 60
+R H+KKL T P+CGDTGVPLQG+ LRPR++A +S +K V RAYGG SANAVK+RI
Sbjct: 30 IRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNQKKVQRAYGGCLSANAVKDRI 89
Query: 61 VRAFLIEEQKIVKR 74
VRAFLIEEQKIVK+
Sbjct: 90 VRAFLIEEQKIVKQ 103
>CE26911 [J] KOG1790 60s ribosomal protein L34
Length = 110
Score = 85.5 bits (210), Expect = 1e-17
Identities = 42/73 (57%), Positives = 52/73 (70%)
Query: 4 QHVKKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVRA 63
Q++KK PKC DTGV L G++ RP + R ++TV+RAYGG S NAVKERI RA
Sbjct: 33 QYIKKRGQIPKCRDTGVKLHGITPARPIALRLLKRNERTVTRAYGGCLSPNAVKERITRA 92
Query: 64 FLIEEQKIVKRVI 76
FL+EEQKIV +VI
Sbjct: 93 FLVEEQKIVNKVI 105
>At1g69620 [J] KOG1790 60s ribosomal protein L34
Length = 119
Score = 83.2 bits (204), Expect = 6e-17
Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 4 QHVKKLATRPKCGDTGVPLQGVSTLRPRQY--ATVSRTKKTVSRAYGGSKSANAVKERIV 61
Q KK A+ PKC TG +QG+ LRP +Y + +SR ++TV+RAYGG S +AV+ERI+
Sbjct: 33 QTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERII 92
Query: 62 RAFLIEEQKIVKRVI 76
RAFL+EEQKIVK+V+
Sbjct: 93 RAFLVEEQKIVKKVL 107
>At1g26880 [J] KOG1790 60s ribosomal protein L34
Length = 120
Score = 83.2 bits (204), Expect = 6e-17
Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 4 QHVKKLATRPKCGDTGVPLQGVSTLRPRQY--ATVSRTKKTVSRAYGGSKSANAVKERIV 61
Q KK A+ PKC TG +QG+ LRP +Y + +SR ++TV+RAYGG S +AV+ERI+
Sbjct: 33 QTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERII 92
Query: 62 RAFLIEEQKIVKRVI 76
RAFL+EEQKIVK+V+
Sbjct: 93 RAFLVEEQKIVKKVL 107
>At3g28900 [J] KOG1790 60s ribosomal protein L34
Length = 120
Score = 78.6 bits (192), Expect = 1e-15
Identities = 41/75 (54%), Positives = 55/75 (72%), Gaps = 2/75 (2%)
Query: 4 QHVKKLATRPKCGDTGVPLQGVSTLRPRQY--ATVSRTKKTVSRAYGGSKSANAVKERIV 61
Q K A+ PKC TG +QG+ LRP +Y + ++R ++TV+RAYGG S AV+ERIV
Sbjct: 33 QTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIV 92
Query: 62 RAFLIEEQKIVKRVI 76
RAFL+EEQKIVK+V+
Sbjct: 93 RAFLVEEQKIVKKVL 107
>7299171 [J] KOG1790 60s ribosomal protein L34
Length = 168
Score = 72.0 bits (175), Expect = 1e-13
Identities = 37/70 (52%), Positives = 48/70 (67%)
Query: 4 QHVKKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVRA 63
Q+VKK T P+CG L+G++ RP + +S+ KTVSR YGG + ++ERIVRA
Sbjct: 33 QYVKKNPTVPRCGQCKEKLKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRA 92
Query: 64 FLIEEQKIVK 73
FLIEEQKIVK
Sbjct: 93 FLIEEQKIVK 102
>7301438_1 [J] KOG1790 60s ribosomal protein L34
Length = 160
Score = 71.6 bits (174), Expect = 2e-13
Identities = 37/70 (52%), Positives = 47/70 (66%)
Query: 4 QHVKKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVRA 63
Q+VKK T P+CG L G++ RP + +S+ KTVSR YGG + ++ERIVRA
Sbjct: 33 QYVKKNPTVPRCGQCKEKLHGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRA 92
Query: 64 FLIEEQKIVK 73
FLIEEQKIVK
Sbjct: 93 FLIEEQKIVK 102
>Hs16117787 [J] KOG1790 60s ribosomal protein L34
Length = 117
Score = 70.9 bits (172), Expect = 3e-13
Identities = 39/74 (52%), Positives = 50/74 (66%), Gaps = 2/74 (2%)
Query: 5 HVKKLATRPK--CGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVR 62
+ KK+ PK CG L+GV +RP+ +S+TKK VSRAYGGS A V++RI R
Sbjct: 34 YTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKR 93
Query: 63 AFLIEEQKIVKRVI 76
AFLIEEQKIV +V+
Sbjct: 94 AFLIEEQKIVVKVL 107
>Hs18570634 [J] KOG1790 60s ribosomal protein L34
Length = 277
Score = 65.9 bits (159), Expect = 9e-12
Identities = 36/70 (51%), Positives = 47/70 (66%), Gaps = 2/70 (2%)
Query: 5 HVKKLATRPK--CGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVR 62
+ KK+ PK CG L+GV +RP+ +S+TKK VSRAYGGS A V++R+ R
Sbjct: 34 YTKKVGKAPKSACGVYPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKRVRDRVKR 93
Query: 63 AFLIEEQKIV 72
AFLI+EQKIV
Sbjct: 94 AFLIKEQKIV 103
>Hs17483374 [R] KOG1721 FOG: Zn-finger
Length = 580
Score = 61.6 bits (148), Expect = 2e-10
Identities = 34/67 (50%), Positives = 44/67 (64%)
Query: 10 ATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVRAFLIEEQ 69
A++ CG L+GV +R + +S+T K VSRAYGGS A V+ RI RAFLIEEQ
Sbjct: 495 ASKSACGMCPGRLRGVRAVRLKVLMKLSKTNKHVSRAYGGSMCAKCVRGRIKRAFLIEEQ 554
Query: 70 KIVKRVI 76
KIV +V+
Sbjct: 555 KIVVKVL 561
>Hs17483362 [J] KOG1790 60s ribosomal protein L34
Length = 117
Score = 61.6 bits (148), Expect = 2e-10
Identities = 35/74 (47%), Positives = 46/74 (61%), Gaps = 2/74 (2%)
Query: 5 HVKKLATRPKCGDTGVP--LQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVR 62
+ KK+ P+ P L+GV +RP+ +S+ KK VSRAYGGS A V+ RI R
Sbjct: 34 YTKKVGKAPRSASGMCPGRLRGVRAVRPKVLMKLSKRKKHVSRAYGGSMCAKCVRGRIKR 93
Query: 63 AFLIEEQKIVKRVI 76
AFLI EQKIV +V+
Sbjct: 94 AFLIGEQKIVVKVL 107
>Hs20556223 [J] KOG1790 60s ribosomal protein L34
Length = 131
Score = 56.2 bits (134), Expect = 7e-09
Identities = 34/74 (45%), Positives = 44/74 (58%), Gaps = 2/74 (2%)
Query: 5 HVKKLATRPK--CGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVR 62
+ KK+ PK CG L+GV +RP+ +S T+K V RA GG A V +RI
Sbjct: 48 YTKKVGKAPKSACGVCPGRLRGVLAVRPKVLMRLSNTRKHVRRACGGLMCAKCVCDRIKG 107
Query: 63 AFLIEEQKIVKRVI 76
AFLIEEQKIV +V+
Sbjct: 108 AFLIEEQKIVVKVL 121
>ECU03g0710 [J] KOG1790 60s ribosomal protein L34
Length = 110
Score = 45.4 bits (106), Expect = 1e-05
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 3 SQHVKKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVR 62
++ VKK + + +C + L ++ +RP +++ + + V+R YG + V+E+I+
Sbjct: 31 NRRVKKHSKKHRCHECNAILGSIARMRPAEFSRQKVSARRVNRPYGATTCGRCVREKIIS 90
Query: 63 AFLIEEQKIV 72
AFL E++IV
Sbjct: 91 AFLGNEERIV 100
>7297848 [K] KOG1074 Transcriptional repressor SALM
Length = 1267
Score = 30.4 bits (67), Expect = 0.44
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 4/38 (10%)
Query: 1 MRSQHVKKLAT----RPKCGDTGVPLQGVSTLRPRQYA 34
++S+H K+ AT RP+C D G P TL P +A
Sbjct: 891 LQSEHAKEPATGHAQRPQCSDAGSPYGAKLTLNPNLFA 928
>Hs22042308 [J] KOG1790 60s ribosomal protein L34
Length = 102
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 24 GVSTLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVRAFLIEEQKIVKRVI 76
G+S +RP+ + + +KT + A +++ AFLI+++KIV +V+
Sbjct: 4 GISAVRPK-VLMIGQYEKTCQQGLRCPMCAKCACDKLKGAFLIKKEKIVSKVL 55
>CE23702 [T] KOG4721 Serine/threonine protein kinase contains leucine zipper
domain
Length = 855
Score = 28.5 bits (62), Expect = 1.7
Identities = 14/32 (43%), Positives = 21/32 (64%)
Query: 31 RQYATVSRTKKTVSRAYGGSKSANAVKERIVR 62
R++A + TV+R +GG KSA A++E I R
Sbjct: 325 REFAKCIQYPSTVTRDHGGPKSAFAMEEEIQR 356
>7304169 [N] KOG4242 Predicted myosin-I-binding protein
Length = 1369
Score = 28.1 bits (61), Expect = 2.2
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 36 VSRTKKTVSRAYGGSKSANAVKERIVRA 63
V+ T+ T+S A GGS+SA+AV+ I A
Sbjct: 668 VAETQDTISLAKGGSESASAVQRLITDA 695
>CE27279 [T] KOG0229 Phosphatidylinositol-4-phosphate 5-kinase
Length = 401
Score = 26.6 bits (57), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 7 KKLATRPKCGDTGVPLQGVSTLRPRQYATVSRTKKTVSRA 46
K+ AT K G + +ST++P QYA R + VSRA
Sbjct: 362 KRSATAAKTVKYGSDAENISTVKPEQYA--KRLVEFVSRA 399
>At4g12570 [O] KOG0940 Ubiquitin protein ligase RSP5/NEDD4
Length = 873
Score = 26.2 bits (56), Expect = 8.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 26 STLRPRQYATVSRTKKTVSRAYGGSKSANAVKERIVRAF 64
ST P + T+ T+SR Y G + + E+IV F
Sbjct: 170 STEHPVAWQTIDDIMYTISRMYKGENLQSNINEKIVTFF 208
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.130 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,836,607
Number of Sequences: 60738
Number of extensions: 108199
Number of successful extensions: 312
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 22
length of query: 96
length of database: 30,389,216
effective HSP length: 72
effective length of query: 24
effective length of database: 26,016,080
effective search space: 624385920
effective search space used: 624385920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)