ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2242 good BK KOG2570 Chromatin structure and dynamics SWI/SNF transcription activation complex subunit
r_klactIII2242 good BK KOG2570 Transcription SWI/SNF transcription activation complex subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2242 792529 791147 -461
(461 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNR023w [BK] KOG2570 SWI/SNF transcription activation complex su... 336 4e-92
YCR052w [BK] KOG2570 SWI/SNF transcription activation complex su... 234 2e-61
Hs21264353 [BK] KOG2570 SWI/SNF transcription activation complex... 110 3e-24
SPAC23G3.10c [BK] KOG2570 SWI/SNF transcription activation compl... 108 1e-23
HsM4507087 [BK] KOG2570 SWI/SNF transcription activation complex... 108 2e-23
At5g14170 [BK] KOG2570 SWI/SNF transcription activation complex ... 104 3e-22
7292842 [BK] KOG2570 SWI/SNF transcription activation complex su... 104 3e-22
Hs20070148 [BK] KOG2570 SWI/SNF transcription activation complex... 102 9e-22
At3g01890 [BK] KOG2570 SWI/SNF transcription activation complex ... 96 1e-19
CE08311 [BK] KOG2570 SWI/SNF transcription activation complex su... 86 1e-16
Hs21264351 [BK] KOG2570 SWI/SNF transcription activation complex... 84 6e-16
Hs21264348 [BK] KOG2570 SWI/SNF transcription activation complex... 82 2e-15
CE01687 [BK] KOG2570 SWI/SNF transcription activation complex su... 81 3e-15
HsM4507085 [BK] KOG2570 SWI/SNF transcription activation complex... 80 6e-15
>YNR023w [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 566
Score = 336 bits (862), Expect = 4e-92
Identities = 205/530 (38%), Positives = 293/530 (54%), Gaps = 75/530 (14%)
Query: 5 QSGATVEHQQAQTVPVAQPTDMYIQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLH 64
Q A Q TVP + P+DM I +L +LIPEL +L ++EKR+D ++ + + +
Sbjct: 38 QDKANNASQITPTVPHSHPSDMVIPDHLAELIPELYSFQQLVDSEKRLDHFIHLRNLHMK 97
Query: 65 QNITQWTHSKYTDP--------ANNQFVRVFISNISENQPWQ--TNDET--MELDQASWT 112
+ + QW SK + N +F+R+FISN+SENQPWQ TN+E M L+ A+WT
Sbjct: 98 RMVAQWERSKLSQEFLYPHLNFPNVKFLRIFISNVSENQPWQMDTNNEADLMALENATWT 157
Query: 113 LRIEGRLLDNGKADDPNRPKFSSFIESVAIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSA 172
+RIEGRLLDN +A+DP R KFSSFIES+ +DFK P T+ PS
Sbjct: 158 MRIEGRLLDNVQANDPAREKFSSFIESIVVDFKNKENDNVPSTKFNAA-PEENATEGPSD 216
Query: 173 KK----------------------PKNEQTVFE------------------WHVDPNTPV 192
KK +N T+ E W DPN PV
Sbjct: 217 KKLNLNLPLQFSLPNGDNSTTTNTDQNNATMGEETAKKDMSSTTPKLESVKWQYDPNNPV 276
Query: 193 EFDGVDVSRKGTENVNCTITIQPKGYTGE-FLQYSPELSCIVGFSKGTFHEAIYSLYKYI 251
+FDG+D+ R G+ENV CTI+I K E F+ YSP+L+ I+G GT H+AI+S+YKYI
Sbjct: 277 DFDGLDIKRVGSENVECTISILRKSSPEEPFMSYSPQLTAIIGLKSGTSHDAIFSIYKYI 336
Query: 252 LLNSLLTNNDEAGPK------------------DSTNGEKVLVKMDASLAKLVSPERLAA 293
LN LLTN++ A D+ + + +VK+D L L+ +
Sbjct: 337 HLNELLTNDESAFENLMGNRNNHNSNTSTSKMLDAASSQVSIVKLDTQLITLLPSSLKES 396
Query: 294 GIVSLKLADLPSLVKD-HVKPIPPIRLDYTIRVDQSSTFGDLVFDMEVPKSTSVK--GDQ 350
++KL DL SL+ H+ P+ PI +DYT+RVD++ST+G+LV D+EVP ++K Q
Sbjct: 397 SPDTMKLTDLLSLINSTHLLPLQPIEIDYTVRVDKASTYGELVLDIEVPDVNALKFNNTQ 456
Query: 351 KLSKDELLLLNEYNTLSTAIEPQIXXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQ 410
+ S+ LNE I+P+I + S K+Y+FF K+++DPV L
Sbjct: 457 RESQIGAAELNENARELEQIKPKIALQDKEITSVLSNLHESNKRYRFFKKISEDPVKALN 516
Query: 411 DYMESSSQALKVLSGDAGFNEDTVRRSQFYQDNDSILFENIGVLLSSGRM 460
+ + S+S ALKVLSGD G+NED VRR+ FY++N+++L ENI V+LS+GRM
Sbjct: 517 ECIASTSNALKVLSGDEGYNEDMVRRANFYKENEAMLRENIEVILSNGRM 566
>YCR052w [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 483
Score = 234 bits (598), Expect = 2e-61
Identities = 171/504 (33%), Positives = 241/504 (46%), Gaps = 81/504 (16%)
Query: 14 QAQTVPVAQPTDMYIQPYLKK-LIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTH 72
Q VPV PTD YI YL + L L KL E + R+D+YL+R+++D N+ T
Sbjct: 4 QTNPVPVTYPTDAYIPTYLPDDKVSNLADLKKLIEMDSRLDLYLTRRRLDTSINLPTNTK 63
Query: 73 SKYTDPANNQFVRVFISNISENQPWQTNDETMELDQASWTLRIEGRLLD---NGKADDPN 129
+K P N + +R+++ N +E+ P + + + +WTLRIEG+LL NGK
Sbjct: 64 TK-DHPPNKEMLRIYVYNTTESSPRSDSGTPADSGKTTWTLRIEGKLLHESANGKHP--- 119
Query: 130 RPKFSSFIESVAIDFK---PVXXXXXXXXXXXMGDPLL-----------------EGTQE 169
FS F+E VA+DFK P+ + PL G E
Sbjct: 120 ---FSEFLEGVAVDFKRLKPLGMGKKRKRDSSLSLPLNLQQPEYNDQDSTMGDNDNGEDE 176
Query: 170 PSAKKPKNEQTV--FEWHVDPNTPVEFDGVDVSRKGTENVNCTITIQPKGYTGEFLQYSP 227
SA+ E+ V EW+ D N VEFDG+D+ R+G +N+ C+ITIQ +G G +QYSP
Sbjct: 177 DSAEAESREEIVDALEWNYDENNVVEFDGIDIKRQGKDNLRCSITIQLRGVDGGKVQYSP 236
Query: 228 ELSCIVGFSKGTFHEAIYSLYKYILLNSLL---------------------TNNDEAGPK 266
L+ ++G G+ ++A+YS+YKYIL+N+L N + AG
Sbjct: 237 NLATLIGMQTGSVNDAVYSIYKYILINNLFVTEQTEAQDGSNDAEDSSNENNNKNGAGDD 296
Query: 267 DSTNG-------EKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKDHVKPIPPIRL 319
D G E VK+D+ L K+ L L L ++ V V P+PPI L
Sbjct: 297 DGVEGSTPKDKPELGEVKLDSLLQKV-----LDTNAAHLPLMNVVQTVNKLVSPLPPIIL 351
Query: 320 DYTIRVDQSSTFGDLVFDMEVPKSTSVKGDQ-KLSKDELLLLNEYNTLSTAIEPQIXXXX 378
DYTI + + +T+G D++V Q L K+E E + TA +I
Sbjct: 352 DYTIDLSKDTTYGATTLDVDVSHILHQPQPQPNLQKEE-----ETDAEDTAKLREI---- 402
Query: 379 XXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAGFNEDTVRRSQ 438
NSSA+KYQFF +L+ P L Y+ SS Q VL GD FNED R S
Sbjct: 403 ---TKLALQLNSSAQKYQFFHELSLHPRETLTHYLWSSKQNELVLQGDQYFNEDAARTSD 459
Query: 439 FY--QDNDSILFENIGVLLSSGRM 460
Y +ND L NI +L S GR+
Sbjct: 460 IYSNNNNDRSLMGNISLLYSQGRL 483
>Hs21264353 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 470
Score = 110 bits (276), Expect = 3e-24
Identities = 112/451 (24%), Positives = 190/451 (41%), Gaps = 84/451 (18%)
Query: 2 SAAQSGATVEHQQAQTVPVA----------QPTDMYIQPYLKKLIPELDGLSKLQEAEKR 51
+A G + Q Q VP A + D + +++L+PE L E++
Sbjct: 59 AAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERK 118
Query: 52 IDIYLSRKKIDLHQNITQWTHSKYTDPANNQFVRVFISNISENQPWQTNDETMELDQASW 111
+D + RK++D+ + + + K + +R++ISN P + + E + ASW
Sbjct: 119 LDQTIMRKRVDIQEALKRPMKQK-------RKLRLYISNTFN--PAKPDAEDSDGSIASW 169
Query: 112 TLRIEGRLLDNGKADDPNRPK--FSSFIESVAIDFKPVXXXXXXXXXXXMGDPLLEGTQE 169
LR+EG+LLD DP++ K FSSF +S+ I+ D L G
Sbjct: 170 ELRVEGKLLD-----DPSKQKRKFSSFFKSLVIEL----------------DKDLYG--- 205
Query: 170 PSAKKPKNEQTVFEWHVDPNTPVEFDGVDVSRKGTENVNCTITIQPKGYTGEFLQYSPEL 229
P N + EWH P T E DG V R G +V CT+ + +F + P L
Sbjct: 206 -----PDNH--LVEWHRTPTTQ-ETDGFQVKRPGDLSVRCTLLLMLDYQPPQF-KLDPRL 256
Query: 230 SCIVGFSKGTFHEAIYSLYKYILLNSLLTNNDEAGPKDSTNGEKVLVKMDASLAKLVSPE 289
+ ++G + + +L++Y+ N L ++D K+ NG+K ++
Sbjct: 257 ARLLGLHTQSRSAIVQALWQYVKTNRLQDSHD----KEYINGDKYFQQI----------- 301
Query: 290 RLAAGIVSLKLADLPSLVKDHVKPIPPIRLDYTIRVDQSSTFGDLVFDMEVPKSTSVKGD 349
LK +++P + + P PI +++ I VD S +D++V +KG
Sbjct: 302 ---FDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQ 358
Query: 350 QKLSKDELLLLNEYNTLSTAIEPQIXXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPML 409
LSTA + +I N + F ++DP +
Sbjct: 359 MSSF-----------LLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV 407
Query: 410 QDYMESSSQALKVLSGDAGFNEDTVRRSQFY 440
QD + S S+ LKV++ AG N + RR++FY
Sbjct: 408 QDLLRSQSRDLKVMTDVAG-NPEEERRAEFY 437
>SPAC23G3.10c [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 425
Score = 108 bits (271), Expect = 1e-23
Identities = 100/427 (23%), Positives = 181/427 (41%), Gaps = 85/427 (19%)
Query: 32 LKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQFVRVFISNI 91
L + IPE + LQ+ E+++D + RK+ DL ++++ +H + +R++I +
Sbjct: 37 LLEKIPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSH-------KTRILRMYIHST 89
Query: 92 SENQPWQTNDETME--------LDQASWTLRIEGRLLDNGKADDPNR---PKFSSFIESV 140
NQ WQ E E L WTL IEGRLL N +D F++F +
Sbjct: 90 VANQSWQQKGENQENNSGDINSLPIPEWTLHIEGRLLVNPDDEDDKAFELAPFTNFFRKI 149
Query: 141 AIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVEFDGVDVS 200
AI L PS EW+ P+ +G+ V+
Sbjct: 150 AIQI------------------LRSDDLYPSG-------NYVEWNKLPDNSNTSNGITVT 184
Query: 201 RKGTENVNCTITIQPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYKYILLNSLLTNN 260
RKG ++V+ I + P+ + E + S + I+G +GT + + L++YI + L
Sbjct: 185 RKGDQSVDVKIMLYPEEHP-ERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRL---- 239
Query: 261 DEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKDHVKPIPPIRLD 320
EK L+ D +L L +R L +P L+ ++PI PI +
Sbjct: 240 -------QDMEEKRLINCDKALRDLFEADR-------LYFPRIPELMNRFLEPIDPIVIP 285
Query: 321 YTIRVDQSSTFGDLVFDMEV----PKSTSVKG--DQKLSKDELLLLNEYNTLSTAIEPQI 374
YTI V + + +FD+ + P+ + ++ +S+D++ +++ L+ I+
Sbjct: 286 YTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDD--KLTELIQ--- 340
Query: 375 XXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAGFNEDTV 434
S KY F K ++ P+ + +++ES S+ L+++ N
Sbjct: 341 ------------AITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEK 388
Query: 435 RRSQFYQ 441
R + +YQ
Sbjct: 389 RSADYYQ 395
>HsM4507087 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 469
Score = 108 bits (270), Expect = 2e-23
Identities = 112/447 (25%), Positives = 189/447 (42%), Gaps = 81/447 (18%)
Query: 3 AAQSGATVEHQQAQTVPVAQPT-------DMYIQPYLKKLIPELDGLSKLQEAEKRIDIY 55
A QS A + Q T P + D + +++L+PE L E+++D
Sbjct: 62 ARQSQAQSQGQPEPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 121
Query: 56 LSRKKIDLHQNITQWTHSKYTDPANNQFVRVFISNISENQPWQTNDETMELDQASWTLRI 115
+ RK +D+ + + + K + +R++ISN P +++ E + ASW LR+
Sbjct: 122 IMRKGVDIQEALKRPMKQK-------RKLRLYISNTFN--PAKSDAEDSDGSIASWELRV 172
Query: 116 EGRLLDNGKADDPNRPK--FSSFIESVAIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAK 173
EG+LLD DP++ K FSSF +S+ I+ D L G
Sbjct: 173 EGKLLD-----DPSKQKRKFSSFFKSLVIEL----------------DKDLYG------- 204
Query: 174 KPKNEQTVFEWHVDPNTPVEFDGVDVSRKGTENVNCTITIQPKGYTGEFLQYSPELSCIV 233
P N + EWH P T E DG V R G +V CT+ + +F + P L+ ++
Sbjct: 205 -PDNH--LVEWHRTPTTQ-ETDGFQVKRPGDLSVRCTLLLMLDYQPPQF-KLDPRLARLL 259
Query: 234 GFSKGTFHEAIYSLYKYILLNSLLTNNDEAGPKDSTNGEKVLVKMDASLAKLVSPERLAA 293
G + + +L++Y+ N L ++D K+ NG+K ++
Sbjct: 260 GLHTQSRSAIVQALWQYVKTNRLQDSHD----KEYINGDKYFQQI--------------F 301
Query: 294 GIVSLKLADLPSLVKDHVKPIPPIRLDYTIRVDQSSTFGDLVFDMEVPKSTSVKGDQKLS 353
LK +++P + + P PI +++ I VD S +D++V +KG
Sbjct: 302 DCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSF 361
Query: 354 KDELLLLNEYNTLSTAIEPQIXXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYM 413
LSTA + +I N + F ++DP +QD +
Sbjct: 362 -----------LLSTANQQEISPLDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLL 410
Query: 414 ESSSQALKVLSGDAGFNEDTVRRSQFY 440
S S+ LKV++ AG N + RR++FY
Sbjct: 411 RSQSRDLKVMTDVAG-NPEEERRAEFY 436
>At5g14170 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 534
Score = 104 bits (259), Expect = 3e-22
Identities = 99/422 (23%), Positives = 175/422 (41%), Gaps = 75/422 (17%)
Query: 28 IQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQFVRVF 87
+Q + ++PE ++L E E R+D L+RKK+D+ + + P + +R++
Sbjct: 152 LQERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKN-------PPCIQKTLRIY 204
Query: 88 ISNISENQPWQTNDETMELDQASWTLRIEGRLLDNGKADD---------PNRPKFSSFIE 138
+ N NQ T D +WTL+I GR+L++G D P PKFSSF +
Sbjct: 205 VFNSFANQN-NTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFK 263
Query: 139 SVAIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVEFDGVD 198
V + P+N ++E + +P +G +
Sbjct: 264 RVTVSLD-------------------------QRLYPENPLIIWE---NARSPAPQEGFE 295
Query: 199 VSRKGTENVNCTITIQPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYKYILLNSLLT 258
+ RKG + +I ++ Y E + S L ++G T I +++ Y+ L
Sbjct: 296 IKRKGNQEFAASIRLE-MNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQN 354
Query: 259 NNDEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKDHVKPIPPIR 318
ND + DA+L K+ E+L +VS K++ H+ P PPI
Sbjct: 355 PNDPS-----------FFNCDAALQKVFGEEKLKFTMVSQKISH-------HLSPPPPIH 396
Query: 319 LDYTIRVDQSSTFGDLVFDMEVPKSTSVKGDQKLSKDELLLLNEYNTLSTAIEPQIXXXX 378
L++ I++ ++ +D+ V ++ D + LL E N A + I
Sbjct: 397 LEHKIKLSGNNPAVSACYDVLVDVPFPIQRDL----NNLLANAEKNKEIEACDEAICAAI 452
Query: 379 XXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAGFNEDTVRRSQ 438
+ ++ FF ++ PV + +ES S+ LKV++G+A N + RRS
Sbjct: 453 RKI-------HEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSD 505
Query: 439 FY 440
F+
Sbjct: 506 FF 507
>7292842 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 515
Score = 104 bits (259), Expect = 3e-22
Identities = 108/412 (26%), Positives = 179/412 (43%), Gaps = 71/412 (17%)
Query: 32 LKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQFVRVFISNI 91
++ L+PE L E+++D + RK++D+ + + + K + +R+FISN
Sbjct: 139 VRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQK-------RKLRIFISNT 191
Query: 92 SENQPWQTNDETMELDQASWTLRIEGRLLDNGKADDPN---RPKFSSFIESVAIDFKPVX 148
TND E ASW LR+EGRLL++GK DPN + KFSSF +S+ I+
Sbjct: 192 FYPSKEPTNDGE-EGAVASWELRVEGRLLEDGKG-DPNTKIKRKFSSFFKSLVIEL---- 245
Query: 149 XXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVEFDGVDVSRKGTENVN 208
D L G P N + EWH +T E DG V R G NV
Sbjct: 246 ------------DKELYG--------PDNH--LVEWH-RTHTTQETDGFQVKRPGDRNVR 282
Query: 209 CTITIQPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYKYILLNSLLTNNDEAGPKDS 268
CTI + Y + P L+ ++G T I +L++YI + L +
Sbjct: 283 CTILLL-LDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAH-------- 333
Query: 269 TNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKDHVKPIPPIRLDYTIRVDQS 328
E+ + D L ++ S +R +K A++P + + P PI +++ I +
Sbjct: 334 ---EREYINCDKYLEQIFSCQR-------MKFAEIPQRLNPLLHPPDPIVINHFIE-SGA 382
Query: 329 STFGDLVFDMEVPKSTSVKGDQKLSKDELLLLNEYNTLSTAIEPQIXXXXXXXXXXXXXX 388
+D++V ++K +N + +STA + +I
Sbjct: 383 ENKQTACYDIDVEVDDTLKNQ----------MNSF-LMSTASQQEIQGLDTKIHETVDTI 431
Query: 389 NSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAGFNEDTVRRSQFY 440
N +FF AKDP + ++ S ++ LK+++ AG N + RR++FY
Sbjct: 432 NQMKTNREFFLSFAKDPQMFIHRWIISETRDLKLMTDVAG-NPEEERRAEFY 482
>Hs20070148 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 476
Score = 102 bits (255), Expect = 9e-22
Identities = 102/420 (24%), Positives = 179/420 (42%), Gaps = 71/420 (16%)
Query: 25 DMYIQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQFV 84
D + +++L+PE L E+++D + RK++D+ + + + K + +
Sbjct: 91 DKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQK-------RKL 143
Query: 85 RVFISNISENQPWQTNDETMELDQASWTLRIEGRLLDNGKADD----PNRPKFSSFIESV 140
R+FISN P +++ E E ASW LR+EGRLL++ + KFSSF +S+
Sbjct: 144 RIFISNTFN--PAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 201
Query: 141 AIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVEFDGVDVS 200
I+ D L G P N + EWH T E DG V
Sbjct: 202 VIEL----------------DKDLYG--------PDNH--LVEWHRTATTQ-ETDGFQVK 234
Query: 201 RKGTENVNCTITIQPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYKYILLNSLLTNN 260
R G NV CT+ + +F + P L+ ++G T I +L++YI + L +
Sbjct: 235 RPGDVNVRCTVLLMLDYQPPQF-KLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPH 293
Query: 261 DEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKDHVKPIPPIRLD 320
E+ V D L ++ +R+ K +++P + + P PI ++
Sbjct: 294 -----------EREFVICDKYLQQIFESQRM-------KFSEIPQRLHALLMPPEPIIIN 335
Query: 321 YTIRVDQSSTFGDLVFDMEVPKSTSVKGDQKLSKDELLLLNEYNTLSTAIEPQIXXXXXX 380
+ I VD + +D++V ++K +N + LSTA + +I
Sbjct: 336 HVISVDPNDQKKTACYDIDVEVDDTLKTQ----------MNSF-LLSTASQQEIATLDNK 384
Query: 381 XXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAGFNEDTVRRSQFY 440
N + +F A+DP + D+++S + LK ++ G N + RR++FY
Sbjct: 385 IHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVG-NPEEERRAEFY 443
>At3g01890 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 442
Score = 95.5 bits (236), Expect = 1e-19
Identities = 100/428 (23%), Positives = 175/428 (40%), Gaps = 86/428 (20%)
Query: 23 PTDMYIQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQ 82
P +Q + ++PE ++L E E R+D L RKK+D+ ++ P+ +
Sbjct: 87 PDKSSLQERVAAVLPESALYTQLLEFESRVDAALFRKKVDIQDSLKN-------PPSIQK 139
Query: 83 FVRVFISNISENQPWQTNDETMELDQASWTLRIEGRLLDNGKA------DDPNRPKFSSF 136
+R+++ N NQ D +WTLRI GR+LD +P PKFSSF
Sbjct: 140 TLRIYVFNTFSNQ-------IPGPDPPTWTLRIFGRVLDPDHTGGLVQNSNPLYPKFSSF 192
Query: 137 IESVAIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVEFDG 196
+++ I L+ + P E + EW D +P +G
Sbjct: 193 FKTLKIS--------------------LDQSLYP-------ENHLIEWKRD-RSPAPLEG 224
Query: 197 VDVSRKGTENVNCTITIQPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYKYILLNSL 256
++ R G + TI ++ Y E + SP L ++G T I +++ Y+ + L
Sbjct: 225 FEIKRIGCQEFAATILLE-MNYVPEKFKTSPALMQVLGIEVDTRPRIIAAIWHYVKVRKL 283
Query: 257 LTNNDEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKDHVKPIPP 316
ND + DA+L + E++ ++S K++ H+ P PP
Sbjct: 284 QNPNDPS-----------FFNCDAALHSVFGEEKMKFTMLSHKISQ-------HLSPPPP 325
Query: 317 IRLDYTIRVDQS----STFGDLVFDMEVPKSTSVKGDQKLSKDELLLLNEYNTLSTAIEP 372
I+L + I++ + S D++ D+ P T + LL E N A +
Sbjct: 326 IQLVHKIKLSGNNPAISACYDVLVDIPAPVQTELSN--------LLANPEKNKEIEACDE 377
Query: 373 QIXXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAGFNED 432
I + ++ FF ++ PV MES ++ LK+++G+A N +
Sbjct: 378 AICGAIRKI-------HEHRRRRAFFLGFSQSPVEFTNALMESQTKDLKLVAGEASRNAE 430
Query: 433 TVRRSQFY 440
RS+F+
Sbjct: 431 KEGRSEFF 438
>CE08311 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 525
Score = 85.9 bits (211), Expect = 1e-16
Identities = 105/440 (23%), Positives = 178/440 (39%), Gaps = 97/440 (22%)
Query: 12 HQQAQTVPVAQP-------TDMYIQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLH 64
H P A P D I P +++L P+ + L +E+++D LSRKK+D+
Sbjct: 115 HGPRMVAPPAAPLPKKKKYADKCIHPKIRELEPDAENYMALLASEQKLDSTLSRKKLDIQ 174
Query: 65 QNITQWTHSKYTDPANNQFVRVFISN--ISENQPWQTNDETMELDQASWTLRIEGRLLDN 122
+ + + + K + +R++IS+ I E QP + DE W LR+EGRLLD
Sbjct: 175 EALKRPSKVK-------KRLRIYISHTFIEEKQPEKDTDEA---SLPMWELRVEGRLLDE 224
Query: 123 --------GKADDPNRPKFSSFIESVAIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKK 174
G+ P R KFSSF +S+ I+ D + G
Sbjct: 225 QPPAPAIPGQRPVPKR-KFSSFFKSLVIEL----------------DKEMYGP------- 260
Query: 175 PKNEQTVFEWHVDPNTPVEFDGVDVSRKGTENVNCTITIQPKGYTGEFLQYSPELSCIVG 234
+Q + EWH P T E DG V R G V C I + + +F + P L+ ++G
Sbjct: 261 ---DQHLVEWHRTPQTN-ETDGFQVKRAGDRPVKCRILLLLDNHPAKF-KLHPRLAKVLG 315
Query: 235 FSKGTFHEAIYSLYKYILLNSLLTNNDEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAG 294
+ T + I +L++YI + L E+ ++ D L++ G
Sbjct: 316 IATETRPKIIEALWQYIKTHGL-----------QDPQERDIINCDTFLSQ-------CFG 357
Query: 295 IVSLKLADLPSLVKDHVKPIPPIRLDYTIR-----VDQSSTFGDLVFDMEVPKSTSVKGD 349
+ ++ ++P+ + ++ P+ ++ I+ +Q ST D+ +ME P VK
Sbjct: 358 VNRMRFMEVPNKLHQLLQQTDPLEFNHIIQRPKEGQEQVSTCYDIDVEMEDP----VKQF 413
Query: 350 QKLSKDELLLLNEYNTLSTAIEPQIXXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPML 409
L N+ TL I N + F+ + +P +
Sbjct: 414 MHTFVHSPGLANDIQTLDQKCYDII-----------EQINELKTRRDFYARFYTEPAEFI 462
Query: 410 QDYMESSSQALKV---LSGD 426
+ ++ S + LK LSGD
Sbjct: 463 KSWVMSQNSDLKTMNELSGD 482
>Hs21264351 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 475
Score = 83.6 bits (205), Expect = 6e-16
Identities = 104/432 (24%), Positives = 175/432 (40%), Gaps = 91/432 (21%)
Query: 25 DMYIQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQFV 84
D + +++L+PE L E+++D ++RK++++ + I + K + +
Sbjct: 86 DKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQK-------RKL 138
Query: 85 RVFISNISENQPWQ--------TNDETMELDQ-ASWTLRIEGRLLDNGKADDPNRP--KF 133
R++ISN + T T D+ ASW LR+EG+LL DDP++ KF
Sbjct: 139 RIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLL-----DDPSKQKRKF 193
Query: 134 SSFIESVAIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVE 193
SSF +S+ I+ D L G P N + EWH P T E
Sbjct: 194 SSFFKSLVIEL----------------DKELYG--------PDNH--LVEWHRMPTTQ-E 226
Query: 194 FDGVDVSRKGTENVNCTITI----QPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYK 249
DG V R G NV CT+ + QP Y + P L+ ++G T + +L+
Sbjct: 227 TDGFQVKRPGDLNVKCTLLLMLDHQPPQY-----KLDPRLARLLGVHTQTRAAIMQALWL 281
Query: 250 YILLNSLLTNNDEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKD 309
YI N L + E+ + + ++ S RL + +KLA L
Sbjct: 282 YIKHNQLQDGH-----------EREYINCNRYFRQIFSCGRLRFSEIPMKLAGL------ 324
Query: 310 HVKPIPPIRLDYTIRVDQSSTFGDLVFDMEVPKSTSVKGDQKLSKDELLLLNEYNTL-ST 368
++ PI +++ I VD + +D++V +K N L ST
Sbjct: 325 -LQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMS------------NFLAST 371
Query: 369 AIEPQIXXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAG 428
+ +I N + F + DP +Q+++ S + LK+++ G
Sbjct: 372 TNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIG 431
Query: 429 FNEDTVRRSQFY 440
N + RR+ FY
Sbjct: 432 -NPEEERRAAFY 442
>Hs21264348 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 435
Score = 81.6 bits (200), Expect = 2e-15
Identities = 81/327 (24%), Positives = 140/327 (42%), Gaps = 59/327 (18%)
Query: 25 DMYIQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQFV 84
D + +++L+PE L E+++D + RK++D+ + + + K + +
Sbjct: 91 DKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQK-------RKL 143
Query: 85 RVFISNISENQPWQTNDETMELDQASWTLRIEGRLLDNGKAD----DPNRPKFSSFIESV 140
R+FISN P +++ E E ASW LR+EGRLL++ + KFSSF +S+
Sbjct: 144 RIFISNTFN--PAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 201
Query: 141 AIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVEFDGVDVS 200
I+ D L G P N + EWH T E DG V
Sbjct: 202 VIEL----------------DKDLYG--------PDNH--LVEWHRTATTQ-ETDGFQVK 234
Query: 201 RKGTENVNCTITIQPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYKYILLNSLLTNN 260
R G NV CT+ + Y + P L+ ++G T I +L++YI + L +
Sbjct: 235 RPGDVNVRCTVLLM-LDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPH 293
Query: 261 DEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKDHVKPIPPIRLD 320
E+ V D L ++ +R +K +++P + + P PI ++
Sbjct: 294 -----------EREFVICDKYLQQIFESQR-------MKFSEIPQRLHALLMPPEPIIIN 335
Query: 321 YTIRVDQSSTFGDLVFDMEVPKSTSVK 347
+ I VD + +D++V ++K
Sbjct: 336 HVISVDPNDQKKTACYDIDVEVDDTLK 362
>CE01687 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 446
Score = 81.3 bits (199), Expect = 3e-15
Identities = 98/432 (22%), Positives = 170/432 (38%), Gaps = 80/432 (18%)
Query: 25 DMYIQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQFV 84
D IQP +++L+PE L E+++D ++RKKID+ + + + K + +
Sbjct: 56 DKLIQPKVRELVPESQAYMDLLAFEQKLDSTITRKKIDVQEALKRPQKIK-------KRL 108
Query: 85 RVFISN--ISENQPWQTNDETMELDQASWTLRIEGRLLDN--------GKADDPNRPKFS 134
R++IS+ I+ +P + D+ W LR+EGRLLD+ P R KFS
Sbjct: 109 RIYISHTFIAGKEPEKEGDDA---SVPMWELRVEGRLLDDMQHPTVGANPRPAPKR-KFS 164
Query: 135 SFIESVAIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVEF 194
SF +S+ I+ + P N + EWH P T E
Sbjct: 165 SFFKSLVIEL------------------------DKDIYGPDNH--LVEWHRTPQTN-ET 197
Query: 195 DGVDVSRKGTENVNCTITIQPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYKYILLN 254
DG V R G V CTI + Y + P L+ ++G + T I +L++YI +
Sbjct: 198 DGFQVKRPGDRPVKCTILLL-LDYQPMKFKLHPRLAKVLGIAAETRPRIIEALWQYIKTH 256
Query: 255 SLLTNNDEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKDHVKPI 314
L D +D+ N + L + G+ ++ ++P + ++
Sbjct: 257 KLQDPQD----RDTINNDLFLEQ--------------CFGVSKMRFMEIPQRLHQLLQQP 298
Query: 315 PPIRLDYTI-RVDQSSTFGDLVFDMEVPKSTSVKGDQKLSKDELLLLNEYNTLSTAIEPQ 373
P+ L++ I R D +D++V VK N+ L I
Sbjct: 299 DPLVLNHIIQRPDDGQDKTSACYDIDVELEDPVKQQMANFVHNQTNANDIQLLDQKIFDL 358
Query: 374 IXXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAGFNEDT 433
+ N + FF + + +P ++ ++ S + LK L+ +G E
Sbjct: 359 V-----------DQINEMKLRRDFFLRFSNEPSGFIKKWVVSQNSDLKTLTESSGDGESD 407
Query: 434 VRRSQFYQDNDS 445
R + Y D+
Sbjct: 408 -RYATTYSTTDT 418
>HsM4507085 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 475
Score = 80.1 bits (196), Expect = 6e-15
Identities = 101/432 (23%), Positives = 174/432 (39%), Gaps = 91/432 (21%)
Query: 25 DMYIQPYLKKLIPELDGLSKLQEAEKRIDIYLSRKKIDLHQNITQWTHSKYTDPANNQFV 84
D + +++L+PE L E+++D ++RK++++ + I + K + +
Sbjct: 86 DKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQK-------RKL 138
Query: 85 RVFISNISENQPWQ--------TNDETMELDQ-ASWTLRIEGRLLDNGKADDPNRPK--F 133
R++ISN + T T D+ ASW LR+EG+LLD DP++ K F
Sbjct: 139 RIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD-----DPSKQKRKF 193
Query: 134 SSFIESVAIDFKPVXXXXXXXXXXXMGDPLLEGTQEPSAKKPKNEQTVFEWHVDPNTPVE 193
SSF +S+ I+ D L G + + EW+ P T E
Sbjct: 194 SSFFKSLVIEL----------------DKELYGP----------DGHLVEWYWMPTTQ-E 226
Query: 194 FDGVDVSRKGTENVNCTITI----QPKGYTGEFLQYSPELSCIVGFSKGTFHEAIYSLYK 249
DG V R G NV CT+ + QP Y + P L+ ++G T + +L+
Sbjct: 227 TDGFQVKRPGDLNVKCTLLLMLDHQPPQY-----KLDPRLARLLGVHTQTRAAIMQALWL 281
Query: 250 YILLNSLLTNNDEAGPKDSTNGEKVLVKMDASLAKLVSPERLAAGIVSLKLADLPSLVKD 309
YI N L + E+ + + ++ S RL + +KLA L
Sbjct: 282 YIKHNQLQDGH-----------EREYINCNRYFRQIFSCGRLRFSEIPMKLAGL------ 324
Query: 310 HVKPIPPIRLDYTIRVDQSSTFGDLVFDMEVPKSTSVKGDQKLSKDELLLLNEYNTL-ST 368
++ PI +++ I VD + +D++V +K N L ST
Sbjct: 325 -LQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMS------------NFLAST 371
Query: 369 AIEPQIXXXXXXXXXXXXXXNSSAKKYQFFDKLAKDPVPMLQDYMESSSQALKVLSGDAG 428
+ +I N + F + DP +Q+++ S + LK+++ G
Sbjct: 372 TNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVTG 431
Query: 429 FNEDTVRRSQFY 440
N + RR+ FY
Sbjct: 432 -NPEEERRAAFY 442
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,637,055
Number of Sequences: 60738
Number of extensions: 1117900
Number of successful extensions: 2021
Number of sequences better than 1.0e-05: 14
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 21
length of query: 461
length of database: 30,389,216
effective HSP length: 110
effective length of query: 351
effective length of database: 23,708,036
effective search space: 8321520636
effective search space used: 8321520636
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)