ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2258 good L KOG3314 Replication, recombination and repair Ku70-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2258 796544 797284 247
(247 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNR020c [L] KOG3314 Ku70-binding protein 378 e-105
SPCC320.12 [D] KOG0580 Serine/threonine protein kinase 175 6e-44
Hs18579834 [L] KOG3314 Ku70-binding protein 113 2e-25
At3g03420 [L] KOG3314 Ku70-binding protein 113 3e-25
7298397 [L] KOG3314 Ku70-binding protein 89 6e-18
>YNR020c [L] KOG3314 Ku70-binding protein
Length = 270
Score = 378 bits (970), Expect = e-105
Identities = 166/224 (74%), Positives = 193/224 (86%), Gaps = 4/224 (1%)
Query: 24 SGFNWWRRTFQYKTGLGLTPEEETQYENDYKFVLQRKQCSKCYEYRDWLLNYSPTVIFMT 83
+GF WWRRT QYKTG+GLTPEE+T+YE+D K +K+C KCYEYRDW+L YSPTV FM
Sbjct: 51 AGFEWWRRTMQYKTGIGLTPEEKTRYEDDSKARELKKECLKCYEYRDWMLKYSPTVRFMV 110
Query: 84 QQIAKLNNKNTNADVFKFDESKIICDVCPDWKSGGFHPDLGILICQNRIKDKWHLEDTLA 143
Q I KLN + + KFD+SKIICD CPDWK GGFHP+LGIL+CQNR++DKWHLEDTL+
Sbjct: 111 QAITKLNKGSDS----KFDDSKIICDYCPDWKGGGFHPELGILLCQNRLRDKWHLEDTLS 166
Query: 144 HELVHYFDNLKWEVDWLNLRHHACSEIRASSLSGECRFFQEFARRGFNTGFKVDRGHQAC 203
HEL+HYFD+LKW++DWLNL+HHACSEIRASSLSGECRF++EF RRGF TGF V RGHQ C
Sbjct: 167 HELIHYFDDLKWQIDWLNLKHHACSEIRASSLSGECRFWEEFKRRGFRTGFHVARGHQDC 226
Query: 204 VKRRAAISVSGNPNCRDKEHAERVVDEVWDSCFNDTRPFDEIYR 247
V+RRA ISVSGNPNC+ KEHA ++VDEVWDSCF DTRPFDEIYR
Sbjct: 227 VRRRAIISVSGNPNCQSKEHAAKIVDEVWDSCFADTRPFDEIYR 270
>SPCC320.12 [D] KOG0580 Serine/threonine protein kinase
Length = 185
Score = 175 bits (443), Expect = 6e-44
Identities = 86/187 (45%), Positives = 119/187 (62%), Gaps = 11/187 (5%)
Query: 60 KQCSKCYEYRDWLLNYSPTVIFMTQQIAKLNNKNTNADVFKFDESKIICDVCPDWKSGGF 119
K+ C + L++ SP +IF+ + +LN + I C C +GG+
Sbjct: 10 KERKNCERVKRALMSQSPVIIFLKTALDRLN--------CNIEAKDISCQPCDAQSTGGY 61
Query: 120 HPDLGILICQNRIKDKWHLEDTLAHELVHYFDNLKWEVDWLNLRHHACSEIRASSLSGEC 179
P GI++C+NR+ K E+T+AHE++H FD+ ++EVDW NLRH ACSEIRASS+SGEC
Sbjct: 62 IPGKGIVLCENRLYTKKMAENTIAHEMIHMFDDHRFEVDWNNLRHQACSEIRASSMSGEC 121
Query: 180 RFFQEFARRGFNTGFKVDRGHQACVKRRAAISVSGNPNCRDKEHAERVVDEVWDSCFNDT 239
R+ +E T + HQ CVKRRA ISV GNPNC+ KE AE +V+EV++SCFND
Sbjct: 122 RWTKELRFGNIKT---FRKHHQECVKRRATISVQGNPNCKSKEQAEAIVEEVFNSCFNDF 178
Query: 240 RPFDEIY 246
RPF++IY
Sbjct: 179 RPFEKIY 185
>Hs18579834 [L] KOG3314 Ku70-binding protein
Length = 246
Score = 113 bits (283), Expect = 2e-25
Identities = 60/140 (42%), Positives = 84/140 (59%), Gaps = 7/140 (5%)
Query: 108 CDVCPDWKSGGFHPDLG-ILICQNRIKDKWHLEDTLAHELVHYFDNLKWEVDWL-NLRHH 165
C+ C SGGF I++CQN I ++ H+ + HEL+H FD+ + VDW N+RH
Sbjct: 88 CEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTHELIHAFDHCRAHVDWFTNIRHL 147
Query: 166 ACSEIRASSLSGECRFFQEFARRGFNTGFKVDRGHQACVKRRAAISVSGNPNCRDKEHAE 225
ACSE+RA++LSG+C E F F + + HQ CV+ RA +S+ N KE A+
Sbjct: 148 ACSEVRAANLSGDCSLVNEI----FRLHFGLKQHHQTCVRDRATLSILAVRNI-SKEVAK 202
Query: 226 RVVDEVWDSCFNDTRPFDEI 245
+ VDEV++SCFND PF I
Sbjct: 203 KAVDEVFESCFNDHEPFGRI 222
>At3g03420 [L] KOG3314 Ku70-binding protein
Length = 194
Score = 113 bits (282), Expect = 3e-25
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 16/170 (9%)
Query: 76 SPTVIFMTQQIAKLNNKNTNADVFKFDESKIICDVCPDWKSGGFHPDLGILICQNRIKDK 135
+P V F+ +Q+ K + ++ + VC +GG+ GI +C N + +
Sbjct: 36 NPIVKFLMEQMEKSG--------CRVGDNFVKAVVCTGPVAGGYTKGRGITVCSNYLTIQ 87
Query: 136 WHLEDTLAHELVHYFDNLKWE-VDWLNLRHHACSEIRASSLSGECRFFQEFARRGFNTGF 194
+ + HEL+H +D + + +DW N HHACSEIRA LSG+C F +E R GF
Sbjct: 88 DEVNQVVIHELIHAYDECRAKNLDWTNCAHHACSEIRAGHLSGDCHFKRELLR-----GF 142
Query: 195 KVDRGH-QACVKRRAAISVSGNPNCRDKEHAERVVDEVWDSCFNDTRPFD 243
RGH Q C+KRR S+ GNP C + A+ ++ VWD+C+NDT+PFD
Sbjct: 143 IKLRGHEQECIKRRVLKSLRGNPYCSEVA-AKDAMEAVWDTCYNDTKPFD 191
>7298397 [L] KOG3314 Ku70-binding protein
Length = 295
Score = 89.0 bits (219), Expect = 6e-18
Identities = 59/179 (32%), Positives = 88/179 (48%), Gaps = 11/179 (6%)
Query: 64 KCYEYRDWLLNYSPTVIFMTQQIAKLNNKNTNADVFKFDESKIICDVCPDWKSGGFHPDL 123
KC E W + P V M + L + D+ + I C+VC +GG+ P L
Sbjct: 88 KCEENVYWCVKNGPLVKLM---MGALKSSGCPIDLRRH----ISCEVCDPTVTGGYDPKL 140
Query: 124 G-ILICQNRIKDKWHLEDTLAHELVHYFDNLKWEVDWLNLRHHACSEIRASSLSGECRFF 182
I++CQN ++K + L HE++H FD ++D+ N+ H AC+EIRA++L+ C F
Sbjct: 141 NQIVVCQNMARNKSMVHGVLTHEMIHMFDYCNNDMDFRNVDHLACTEIRAANLA-HCSFL 199
Query: 183 QEFARRGFNTGFKVDRGHQACVKRRAAISVSGNPNCRDKEHAERVVDEVWDSCFNDTRP 241
+G + F V HQ CVK +A SV N K A V+ V+ C+ D P
Sbjct: 200 SAMF-QGDASPFNVKEAHQNCVKSKALASVLAVRNI-SKADAVAAVERVFPKCYADLEP 256
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.138 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,545,927
Number of Sequences: 60738
Number of extensions: 849462
Number of successful extensions: 2095
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2081
Number of HSP's gapped (non-prelim): 5
length of query: 247
length of database: 30,389,216
effective HSP length: 104
effective length of query: 143
effective length of database: 24,072,464
effective search space: 3442362352
effective search space used: 3442362352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)