ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2288 good A KOG1272 RNA processing and modification WD40-repeat-containing subunit of the 18S rRNA processing complex
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2288 805512 807185 558
(558 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER082c [A] KOG1272 WD40-repeat-containing subunit of the 18S rR... 777 0.0
SPAC959.03c [A] KOG1272 WD40-repeat-containing subunit of the 18... 441 e-123
Hs9954875 [A] KOG1272 WD40-repeat-containing subunit of the 18S ... 372 e-103
CE05741 [A] KOG1272 WD40-repeat-containing subunit of the 18S rR... 337 4e-92
At3g10530 [A] KOG1272 WD40-repeat-containing subunit of the 18S ... 330 3e-90
7290882 [A] KOG1272 WD40-repeat-containing subunit of the 18S rR... 300 3e-81
ECU05g1500 [A] KOG1272 WD40-repeat-containing subunit of the 18S... 285 1e-76
7302603 [R] KOG0289 mRNA splicing factor 57 1e-07
Hs7657381 [R] KOG0289 mRNA splicing factor 55 3e-07
At2g33340 [R] KOG0289 mRNA splicing factor 52 2e-06
>YER082c [A] KOG1272 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 554
Score = 777 bits (2006), Expect = 0.0
Identities = 377/555 (67%), Positives = 450/555 (80%), Gaps = 7/555 (1%)
Query: 4 KKGSKSQYSDLQRRDNQDKFERSNNDDDANGSHXXXXXXXXXXXXXXXXRIDQKYKEAVL 63
K G + Q ++ R+NQ+KFERS ++A +H +ID++YK+AV
Sbjct: 5 KNGHRRQ---IKERENQNKFERSTYTNNAKNNHTQTKDKKLRAGLK---KIDEQYKKAVS 58
Query: 64 STAATEYLLPEEHGYLEAEDEMEKTFKFTQAEIKHHVDASMANKALDLKLNDFGPYRVNY 123
S AAT+YLLPE +GYLE E+E+EKTFK Q+EIK VD S ANKALDL L +FGPY + Y
Sbjct: 59 SAAATDYLLPESNGYLEPENELEKTFKVQQSEIKSSVDVSTANKALDLSLKEFGPYHIKY 118
Query: 124 SRNGTHMLIAGRKGHVASLDWRKGELRGELNLGETVQAATYLQNEQFFAVAQKKYTFIYD 183
++NGTH+LI GRKGHVAS+DWRKG+LR EL L ET +ATYLQNEQ+FAVAQKKYTFIYD
Sbjct: 119 AKNGTHLLITGRKGHVASMDWRKGQLRAELFLNETCHSATYLQNEQYFAVAQKKYTFIYD 178
Query: 184 HEGVELHRLKQHIEVKHLEYLPYHYLLATAGQTGFLKYQDVSTGQLVSEIRTKLGPTTAM 243
HEG ELHRLKQHIE +HL++LPYHYLL TAG+TG+LKY DVSTGQLVSE+RTK GPT AM
Sbjct: 179 HEGTELHRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHDVSTGQLVSELRTKAGPTMAM 238
Query: 244 AQNPWNAVMHLGHSNGTVTLWSPSMPSPLVRLLSSRGSITGIAVDRQGYYMATTGSDKSL 303
AQNPWNAVMHLGHSNGTV+LWSPSMP PLV+LLS+RG + IA+DR GYYMATTG+D+S+
Sbjct: 239 AQNPWNAVMHLGHSNGTVSLWSPSMPEPLVKLLSARGPVNSIAIDRSGYYMATTGADRSM 298
Query: 304 KIWDIRNFKEVHSIENMPTPGTNVAISDTGLLAVSRGPHVTIWKDTLKSGKAARPYFTS- 362
KIWDIRNFK++HS+E++PTPGTNV+ISDTGLLA+SRGPHVT+WKD LK ++P F S
Sbjct: 299 KIWDIRNFKQLHSVESLPTPGTNVSISDTGLLALSRGPHVTLWKDALKLSGDSKPCFGSM 358
Query: 363 SGYKDRNTPYMSHLFAGNKIENFQFAPFEDLLGVGHQKGITNLIIPGAGEANYDALEANP 422
G RNTPYMSHLFAGNK+EN F PFEDLLGVGHQ GITNLI+PGAGEANYDALE NP
Sbjct: 359 GGNPHRNTPYMSHLFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANYDALELNP 418
Query: 423 YETSKQRQEQEVRSLLNKLPADSITLNPNTIGTVDSRASQVRLNAKDLAIISNAEQEKSK 482
+ET KQRQEQEVR+LLNKLPAD+ITL+PN+IG+VD R+S +RLNAKDLA + K+K
Sbjct: 419 FETKKQRQEQEVRTLLNKLPADTITLDPNSIGSVDKRSSTIRLNAKDLAQTTMDANNKAK 478
Query: 483 LNKDIPDARPDVKGKNSGLRAFLRKKTRNVVDERKLRVQRQLXXXXXXXXXXXXXXXGEL 542
N DIPD +PDVKGKNSGLR+FLRKKT+NV+DERKLRVQ+QL G +
Sbjct: 479 TNSDIPDVKPDVKGKNSGLRSFLRKKTQNVIDERKLRVQKQLDKEKNIRKRNHQIKQGLI 538
Query: 543 ADDHKDLVDEALSRF 557
++DHKD+++EALSRF
Sbjct: 539 SEDHKDVIEEALSRF 553
>SPAC959.03c [A] KOG1272 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 520
Score = 441 bits (1133), Expect = e-123
Identities = 222/472 (47%), Positives = 312/472 (66%), Gaps = 26/472 (5%)
Query: 53 RIDQKYKEAVLSTAATEYLLPEEHGYLEAEDEMEKTFKFTQAEIKHHVDASMANKALDLK 112
+I+++ + S A TE L + G LEAE +E+T+KF Q ++ +V A K+ L
Sbjct: 40 KIEERIENVESSLAKTEILHEDNPGLLEAEG-LERTYKFRQDQLAPNVALETATKSFSLD 98
Query: 113 LNDFGPYRVNYSRNGTHMLIAGRKGHVASLDWRKGELRGELNLGETVQAATYLQNEQFFA 172
L+ FG Y +Y+R+G +L+ GRKGH+++ DWR G+L EL+L ETV+ + N Q+FA
Sbjct: 99 LDKFGGYSFDYTRDGRMILLGGRKGHISAFDWRTGKLLTELHLRETVRDVKWFHNHQYFA 158
Query: 173 VAQKKYTFIYDHEGVELHRLKQHIEVKHLEYLPYHYLLATAGQTGFLKYQDVSTGQLVSE 232
VAQKKY ++YD+ G E+H LK+HIEV L++LPYH LL + G G+LKYQDVSTGQLV+E
Sbjct: 159 VAQKKYVYVYDNMGTEIHCLKRHIEVNALDFLPYHLLLTSIGNAGYLKYQDVSTGQLVAE 218
Query: 233 IRTKLGPTTAMAQNPWNAVMHLGHSNGTVTLWSPSMPSPLVRLLSSRGSITGIAVDRQGY 292
RT +G + + QNP NAV H+GH+NG VTLWSPS +PLV++L+ RG + +AV+R G
Sbjct: 219 HRTGMGASHVLHQNPHNAVEHVGHANGQVTLWSPSSTTPLVKMLTHRGPVRDLAVNRDGR 278
Query: 293 YMATTGSDKSLKIWDIRNFKEVHSIENMPTPGTNVAISDTGLLAVSRGPHVTIWKDTLKS 352
YM T G+D LK+WD+R +KE+HS PTP + +SD GLLAV GPH TIWKD L++
Sbjct: 279 YMVTAGADSLLKVWDLRTYKELHSYYT-PTPAQRLTLSDRGLLAVGWGPHATIWKDALRT 337
Query: 353 GKAARPYFTSSGYKDRNTPYMSHLFAGNKIENFQFAPFEDLLGVGHQKGITNLIIPGAGE 412
+N PYM+HL + + + + P+ED+LG+GH KG ++I+PG+GE
Sbjct: 338 --------------KQNFPYMNHLLPSSSVVDLHYCPYEDILGIGHAKGFESIIVPGSGE 383
Query: 413 ANYDALEANPYETSKQRQEQEVRSLLNKLPADSITLNPNTIGTVDSRASQVRLNAKDLAI 472
NYD+ E +P+ + KQRQE EVR LL KL + I+LN + IG VD A +R
Sbjct: 384 PNYDSYENDPFASRKQRQETEVRQLLEKLRPEMISLNADFIGNVDRAAPSLRK------- 436
Query: 473 ISNAEQEKSKLNKDIPDARPDVKGKNSGLRAFLRKKTRNVVDERKLRVQRQL 524
+ AE+EK K +P A+ +GKNS LR +LRK RNVVD+R+L+V++ L
Sbjct: 437 -AEAEEEKPPEEKWVPKAK--ARGKNSALRRYLRKHARNVVDQRRLKVEKSL 485
>Hs9954875 [A] KOG1272 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 610
Score = 372 bits (956), Expect = e-103
Identities = 204/469 (43%), Positives = 282/469 (59%), Gaps = 29/469 (6%)
Query: 59 KEAVLSTAATEYLLPEEHGYLEAEDEMEKTFKFTQAEIKHHVDASMANKALDLKLNDFGP 118
+E + A +E LL EE G+LE ED E T K QA+I VD + A K DL L FGP
Sbjct: 140 EETSIKAARSELLLAEEPGFLEGEDG-EDTAKICQADIVEAVDIASAAKHFDLNLRQFGP 198
Query: 119 YRVNYSRNGTHMLIAGRKGHVASLDWRKGELRGELNLGETVQAATYLQNEQFFAVAQKKY 178
YR+NYSR G H+ GR+GHVA+LDW +L E+N+ E V+ +L +E AVAQ ++
Sbjct: 199 YRLNYSRTGRHLAFGGRRGHVAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRW 258
Query: 179 TFIYDHEGVELHRLKQHIEVKHLEYLPYHYLLATAGQTGFLKYQDVSTGQLVSEIRTKLG 238
IYD++G+ELH +++ V LE+LP+H+LLATA +TGFL Y DVS G++V+ + + G
Sbjct: 259 LHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAG 318
Query: 239 PTTAMAQNPWNAVMHLGHSNGTVTLWSPSMPSPLVRLLSSRGSITGIAVDRQGYYMATTG 298
M+QNP+NAV+HLGHSNGTV+LWSP+M PL ++L RG + +AVD G YMAT+G
Sbjct: 319 RLDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSG 378
Query: 299 SDKSLKIWDIRNFKEVHSIENMPTPGTNVAISDTGLLAVSRGPHVTIWKDTLKSGKAARP 358
D LKI+D+R + S +P ++A S GLL G V IW GKA+ P
Sbjct: 379 LDHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVVNIWAG---QGKASPP 435
Query: 359 YFTSSGYKDRNTPYMSHLFAGNKIENFQFAPFEDLLGVGHQKGITNLIIPGAGEANYDAL 418
PY++H +G + QF PFED+LGVGH GIT++++PGAGE N+D L
Sbjct: 436 --------SLEQPYLTHRLSG-PVHGLQFCPFEDVLGVGHTGGITSMLVPGAGEPNFDGL 486
Query: 419 EANPYETSKQRQEQEVRSLLNKLPADSITLNPNTIGTVDSRASQVRLNAKDLAIISNAEQ 478
E+NPY + KQRQE EV++LL K+PA+ I L+P + VD +++ ++
Sbjct: 487 ESNPYRSRKQRQEWEVKALLEKVPAELICLDPRALAEVDV-----------ISLEQGKKE 535
Query: 479 EKSKLNKDIPDAR----PDVKGKNSGLRAFLRKKTRNVVDERKLRVQRQ 523
+ +L D P A+ P K K A L K+ R V+DE RQ
Sbjct: 536 QIERLGYD-PQAKAPFQPKPKQKGRSSTASLVKRKRKVMDEEHRDKVRQ 583
>CE05741 [A] KOG1272 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 580
Score = 337 bits (863), Expect = 4e-92
Identities = 181/474 (38%), Positives = 280/474 (58%), Gaps = 38/474 (8%)
Query: 57 KYKEAVLSTAATEYLLPEEHGYLEAEDEMEK-TFKFTQAEIKHHVDASMANKALDLKLND 115
K++ + +TA E L E G++ ++E T+ Q +I VD + A K +LKL
Sbjct: 109 KFQRRIEATAKAEKRLVENTGFVAPDEEDHSLTYSIRQKDIAESVDLAAATKHFELKLPR 168
Query: 116 FGPYRVNYSRNGTHMLIAGRKGHVASLDWRKGELRGELNLGETVQAATYLQNEQFFAVAQ 175
FGPY ++Y+ NG H++I GRKGH+A+LDW+ L E ++ E V +L E F AVAQ
Sbjct: 169 FGPYHIDYTDNGRHLVIGGRKGHLAALDWQTKHLHFEQSVMEKVSDVKFLHTENFIAVAQ 228
Query: 176 KKYTFIYDHEGVELHRLKQHIEVKHLEYLPYHYLLATAGQTGFLKYQDVSTGQLVSEIRT 235
K YT++YD+ G ELH LK + LE+LP+H+LL + + FL Y DVS G+ V+ T
Sbjct: 229 KNYTYVYDNLGTELHCLKTMYDTARLEFLPHHFLLVGSSRNSFLNYVDVSVGKQVASFAT 288
Query: 236 KLGPTTAMAQNPWNAVMHLGHSNGTVTLWSPSMPSPLVRLLSSRGSITGIAVDRQGYYMA 295
K G M QNP NA++H GH+NGTV+LWSP+ PLV++L+ ++ GIAVD QG YMA
Sbjct: 289 KSGTLDVMCQNPANAIIHTGHTNGTVSLWSPNSKEPLVKILTHLSAVKGIAVDDQGNYMA 348
Query: 296 TTGSDKSLKIWDIRNFKEVHSIENMPTPGTNVAISDTGLLAVSRGPHVTIWKDTLKSGKA 355
TTG D+ +IWD+R F+++H+ ++P +NVAIS +A + G HV +++ + +G
Sbjct: 349 TTGLDRKCRIWDVRMFRQLHAY-SLPFGVSNVAISQKMNVACAVGNHVQVFRG-MHNGTC 406
Query: 356 ARPYFTSSGYKDRNTPYMSHLFAGNKIENFQFAPFEDLLGVGHQKGITNLIIPGAGEANY 415
PY + G + + +F P+ED+LG+GH G T++++PGAG+ N
Sbjct: 407 KEPYLVHN--------------CGGVVTDLRFVPWEDVLGIGHAGGFTSMLVPGAGDPNV 452
Query: 416 DALEANPYETSKQRQEQEVRSLLNKLPADSITLNPNTIGTVDSRASQVRLNAKDLAIISN 475
D L +NPYET QR+E+E++ LL+K+ + I+LNP+ I V+ ++
Sbjct: 453 DTLRSNPYETKSQRKEREIKQLLDKIQPELISLNPDDINKVNE------------GLLEL 500
Query: 476 AEQEKSKLNKDIPDA-----RPDVKGKNSGLRAFLRKKTRNVVDERKLRVQRQL 524
E+E+ K+ P A R ++ K SG + RK N+V + ++R++R +
Sbjct: 501 EEEERKKILYIRPMAVQYTPRHKMRSKKSGWKMEARK---NIVKD-QIRMERNM 550
>At3g10530 [A] KOG1272 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 548
Score = 330 bits (847), Expect = 3e-90
Identities = 179/451 (39%), Positives = 269/451 (58%), Gaps = 20/451 (4%)
Query: 59 KEAVLSTAATEYLLPEEHGYLEAEDEMEKTFKFTQAEIKHHVDASMANKALDLKLNDFGP 118
K A + ++LLP E GYLE E +EKT++ Q +I + VD + D+ L DFGP
Sbjct: 74 KSAKAAAKIEKWLLPAEAGYLETEG-LEKTWRVKQTDIANEVDILSSRNQYDIVLPDFGP 132
Query: 119 YRVNYSRNGTHMLIAGRKGHVASLDWRKGELRGELNLGETVQAATYLQNEQFFAVAQKKY 178
Y+++++ +G HML GRKGH+A LD L E+ + ETV+ +L N+QFFA AQKKY
Sbjct: 133 YKLDFTASGRHMLAGGRKGHLALLDMMNMSLIKEIQVRETVRDVAFLHNDQFFAAAQKKY 192
Query: 179 TFIYDHEGVELHRLKQHIEVKHLEYLPYHYLLATAGQTGFLKYQDVSTGQLVSEIRTKLG 238
+IY +G ELH LK+ V L +L H+LLA+ +G L YQDV+ G +V+ IRT G
Sbjct: 193 AYIYGRDGTELHCLKERGPVARLRFLKNHFLLASVNMSGQLHYQDVTHGGMVASIRTGKG 252
Query: 239 PTTAMAQNPWNAVMHLGHSNGTVTLWSPSMPSPLVRLLSSRGSITGIAVDRQGYYMATTG 298
T M NP+N+V+ LGHS GTVT+W P+ +PLV++ G ++ +A G+ MAT+G
Sbjct: 253 RTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSG 312
Query: 299 SDKSLKIWDIRNFKEVHSIENMPTPGTNVAISDTGLLAVSRGPHVTIWKDTLKSGKAARP 358
++ +KIWD+R F+EV +I + ++ S GLLA G V I D
Sbjct: 313 KERKIKIWDLRKFEEVQTIHSF--HAKTLSFSQKGLLAAGTGSFVQILGD---------- 360
Query: 359 YFTSSGYKDRNTPYMSH-LFAGNKIENFQFAPFEDLLGVGHQKGITNLIIPGAGEANYDA 417
+S G T YM+H + G +IE F P+ED++G+GH G ++++IPG+GE N+D+
Sbjct: 361 --SSGGSSHNYTRYMNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDS 418
Query: 418 LEANPYETSKQRQEQEVRSLLNKLPADSITLNPNTIGTVDSRASQVRLNAKDLAIISNAE 477
ANP+ETSKQR+E+EV SLL+KLP ++I L+P+ IG + + + + ++ AE
Sbjct: 419 WVANPFETSKQRREKEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEI----EAE 474
Query: 478 QEKSKLNKDIPDARPDVKGKNSGLRAFLRKK 508
+E + + + KG+N + +KK
Sbjct: 475 KEVAIEAAKSTELKNKTKGRNKPSKRTKKKK 505
>7290882 [A] KOG1272 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 609
Score = 300 bits (769), Expect = 3e-81
Identities = 167/467 (35%), Positives = 257/467 (54%), Gaps = 14/467 (2%)
Query: 4 KKGSKSQYSDLQRRDNQDKFERSNNDDDANGSHXXXXXXXXXXXXXXXXRIDQKYKEAVL 63
K +K +L+ R ++ + D + G R + + A
Sbjct: 64 KAPAKPTKEELEARPKKNPIPKEILDKYSRGEQVQPKGVKTRHFKEQQTRKEVYLEYATE 123
Query: 64 STAATEYLLPEEHGYLEAEDEMEKTFKFTQAEIKHHVDASMANKALDLKLNDFGPYRVNY 123
A TE LL E G L+A DE E T +F Q++I +VD + K +L + +FGPYR+ Y
Sbjct: 124 QAARTELLLQETAGQLQA-DEGETTAEFRQSQIAENVDIQSSAKHFNLNM-EFGPYRMRY 181
Query: 124 SRNGTHMLIAGRKGHVASLDWRKGELRGELNLGETVQAATYLQNEQFFAVAQKKYTFIYD 183
++NG H+L+ G++GHVA+ DW L E N E+V+ +L +AVAQK + + YD
Sbjct: 182 TKNGRHLLLGGKRGHVAAFDWVTKRLHCEFNAMESVEDVQWLHVPTMYAVAQKSWVYFYD 241
Query: 184 HEGVELHRLKQHIEVKHLEYLPYHYLLATAGQTGFLKYQDVSTGQLVSEIRTKLGPTTAM 243
+G ELH +K+ V L++LPYH+LLA G+ + DVS G+LV T LG +
Sbjct: 242 KKGTELHCIKRLNRVNRLDFLPYHFLLAAGNSAGYASWLDVSIGELVGNFNTGLGDIRML 301
Query: 244 AQNPWNAVMHLGHSNGTVTLWSPSMPSPLVRLLSSRGSITGIAVDRQGYYMATTGSDKSL 303
NP N V+ +G G V++WSP + PL +LL +++ +AV+ +G Y+ T G D+++
Sbjct: 302 RHNPRNGVLCIGGGRGVVSMWSPKVREPLAKLLCHSTAMSALAVEPKGQYLVTAGLDRAV 361
Query: 304 KIWDIRNFKEVHSIEN--MPTPGTNVAISDTGLLAVSRGPHVTIWKDTLKSGKAARPYFT 361
K+WDIR + + + P + +S G+LA+S+G ++ + D L G
Sbjct: 362 KVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQGTYLETYSDLLSGG-------- 413
Query: 362 SSGYKDRNTPYMSHLFAGNKIENFQFAPFEDLLGVGHQKGITNLIIPGAGEANYDALEAN 421
SG R PY+ + +F P+ED+LGV KG +L++PG+GE N+DA+E N
Sbjct: 414 GSGDGTR-LPYIRQR-CDAFVHGLRFCPYEDVLGVSTAKGFQSLLVPGSGEPNFDAMEDN 471
Query: 422 PYETSKQRQEQEVRSLLNKLPADSITLNPNTIGTVDSRASQVRLNAK 468
PYETSKQR+E EV +LL K+P + ITL+P I VD+ Q +++AK
Sbjct: 472 PYETSKQRREHEVHALLEKIPPELITLDPQEITGVDAPTLQEKIDAK 518
>ECU05g1500 [A] KOG1272 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 435
Score = 285 bits (730), Expect = 1e-76
Identities = 150/381 (39%), Positives = 234/381 (61%), Gaps = 22/381 (5%)
Query: 71 LLPEEHGYLEAEDEMEKTFKFTQAEIKHHVDASMANKALDLKLNDFGPYRVNYSRNGTHM 130
L E GY+EA+ + EKT++ TQ +I+ HV +A +L + GP +SRNG +M
Sbjct: 30 LRTETCGYIEADSD-EKTYEVTQDKIRRHVSIKACEQAYNLSFEN-GPIYAKHSRNGAYM 87
Query: 131 LIAGRKGHVASLDWRKGELRGELNLGETVQAATYLQNEQFFAVAQKKYTFIYDHEGVELH 190
L+ KG++AS + + L+ E+++ E + ATYL NEQF AVAQK F+YD G+E+H
Sbjct: 88 LLRNSKGYLASFNTKSMNLQFEIDVNEKIYDATYLHNEQFIAVAQKNNVFVYDGNGIEMH 147
Query: 191 RLKQHIEVKHLEYLPYHYLLATAGQTGFLKYQDVSTGQLVSEIRTKLGPTTAMAQNPWNA 250
++++ V +EYLPYHYLL A GFL+YQD+STG++VS+I + T+M QNP NA
Sbjct: 148 CVRENSGVFKMEYLPYHYLLVAASDKGFLRYQDISTGKIVSQIYLRNREVTSMKQNPMNA 207
Query: 251 VMHLGHSNGTVTLWSPSMPSPLVRLLSSRGSITGIAVDRQGYYMATTGSDKSLKIWDIRN 310
++H G+ G V+LWSP+ L+++L + +++ I ++R G YM TTG D + +WD+RN
Sbjct: 208 IIHTGNVKGVVSLWSPNSKEYLMKILCHKSTVSSIEIERGGRYMITTGMDNRVNVWDLRN 267
Query: 311 -FKEVHSIENMPTPGTNVAISDTGLLAVSRGPHVTIWKDTLKS--GKAARPYFTSSGYKD 367
+K ++++ ++S +LA+S G +V IWKD + S G+A
Sbjct: 268 TYKHLNTLRTKHILSA-TSLSQKNMLALSYGDNVHIWKDFIDSNCGEAL----------- 315
Query: 368 RNTPYMSHLFAGNKIENFQFAPFEDLLGVGHQKGITNLIIPGAGEANYDALEANPYETSK 427
YM H G + + F ED+L +GH GI+N+I+PG G+ YD+ E +P+ + K
Sbjct: 316 ----YMKHK-TGMPVSSVDFCNHEDILCIGHLGGISNIIVPGCGDPVYDSYEDSPFMSRK 370
Query: 428 QRQEQEVRSLLNKLPADSITL 448
R+E+EVRSLL K+P + I++
Sbjct: 371 MRKEKEVRSLLEKIPYELISM 391
>7302603 [R] KOG0289 mRNA splicing factor
Length = 505
Score = 56.6 bits (135), Expect = 1e-07
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 208 YLLATAGQTGFLKYQDVSTGQLVSEI--RTKLGPTTAMAQNPWNAVMHLGHSNGTVTLWS 265
YLL+T+ + + D+ TG+L++++ ++G TTA +P + G + V +W
Sbjct: 321 YLLSTSSDKHWA-FSDIRTGRLLTKVIDTAEVGLTTAQF-HPDGLIFGTGTVDSQVKIWD 378
Query: 266 PSMPSPLVRLLSSRGSITGIAVDRQGYYMATTGSDKSLKIWDIRNFKEVHSIE 318
S + G I+ I+ GYY+AT D +K+WD+R K +I+
Sbjct: 379 LKEQSNVANFPGHTGPISAISFSENGYYLATAADDACVKLWDLRKLKNFKTIQ 431
>Hs7657381 [R] KOG0289 mRNA splicing factor
Length = 504
Score = 55.1 bits (131), Expect = 3e-07
Identities = 29/113 (25%), Positives = 57/113 (49%), Gaps = 3/113 (2%)
Query: 208 YLLATAGQTGFLKYQDVSTGQLVSEIRTKL-GPTTAMAQ-NPWNAVMHLGHSNGTVTLWS 265
YLL+++ + + D+ TG++++++ + G + AQ +P + G + + +W
Sbjct: 320 YLLSSSDDQ-YWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWD 378
Query: 266 PSMPSPLVRLLSSRGSITGIAVDRQGYYMATTGSDKSLKIWDIRNFKEVHSIE 318
+ + G IT IA GYY+AT D S+K+WD+R K +++
Sbjct: 379 LKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ 431
>At2g33340 [R] KOG0289 mRNA splicing factor
Length = 540
Score = 52.0 bits (123), Expect = 2e-06
Identities = 48/202 (23%), Positives = 87/202 (42%), Gaps = 24/202 (11%)
Query: 197 EVKHLEYLPYHYLLATAGQTGFLKYQDVSTGQLVSEIR--TKLGPTTAMAQNPWNAVMHL 254
+V+ + P + +A G + D+S+G ++++ +K TA A +P ++
Sbjct: 286 KVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGLILGT 345
Query: 255 GHSNGTVTLWSPSMPSPLVRLLSSRGSITGIAVDRQGYYMATTGSDKSLKIWD---IRNF 311
G S V +W + + + G +T I+ GY++AT D +++WD +RNF
Sbjct: 346 GTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED-GVRLWDLRKLRNF 404
Query: 312 K-----EVHSIENMPTPGTNVAISDTGLLAVSRGPHVTIWK------DTLKSGKAARPYF 360
K + +S+E P+ G+ + I+ + + W D +GKA F
Sbjct: 405 KSFLSADANSVEFDPS-GSYLGIAASDIKVYQTASVKAEWNLIKTLPDLSGTGKATCVKF 463
Query: 361 TSS------GYKDRNTPYMSHL 376
S G DRN Y+ L
Sbjct: 464 GSDAQYVAVGSMDRNYGYLVFL 485
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,507,963
Number of Sequences: 60738
Number of extensions: 1301728
Number of successful extensions: 4357
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4323
Number of HSP's gapped (non-prelim): 15
length of query: 558
length of database: 30,389,216
effective HSP length: 112
effective length of query: 446
effective length of database: 23,586,560
effective search space: 10519605760
effective search space used: 10519605760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)