ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2295 good O KOG2062 Posttranslational modification, protein turnover, chaperones 26S proteasome regulatory complex, subunit RPN2/PSMD1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2295 810178 807380 -933
(933 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL075c [O] KOG2062 26S proteasome regulatory complex subunit RP... 1117 0.0
SPBC17D11.07c [O] KOG2062 26S proteasome regulatory complex subu... 627 e-179
Hs4506225 [O] KOG2062 26S proteasome regulatory complex subunit ... 598 e-170
At1g04810 [O] KOG2062 26S proteasome regulatory complex subunit ... 597 e-170
At2g32730 [O] KOG2062 26S proteasome regulatory complex subunit ... 588 e-167
7301756 [O] KOG2062 26S proteasome regulatory complex subunit RP... 549 e-156
CE24810 [O] KOG2062 26S proteasome regulatory complex subunit RP... 360 4e-99
CE04049 [O] KOG2062 26S proteasome regulatory complex subunit RP... 216 2e-55
ECU02g0480 [O] KOG2062 26S proteasome regulatory complex subunit... 211 6e-54
SPBP19A11.03c [O] KOG2005 26S proteasome regulatory complex subu... 94 8e-19
Hs20149522 [O] KOG2005 26S proteasome regulatory complex subunit... 84 1e-15
At2g20580 [O] KOG2005 26S proteasome regulatory complex subunit ... 81 7e-15
YHR027c [O] KOG2005 26S proteasome regulatory complex subunit RP... 62 4e-09
>YIL075c [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 945
Score = 1117 bits (2888), Expect = 0.0
Identities = 562/942 (59%), Positives = 704/942 (74%), Gaps = 9/942 (0%)
Query: 1 MSVTSALPLLALLKESDNTVKTHALQSIKDVVDQQWSEISNDITEIEALYDDVSFPDRRL 60
MS+T+A PLLALL+E+ ++VKT+AL+SI +VVDQ WSEISN++ +IEALYDD +F DR +
Sbjct: 1 MSLTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREM 60
Query: 61 AAIVASKVYYNLGEYQLAVKYALAAGEYLNIDEQSQYVETIVSQSIEMYIEFASSNYESE 120
AA++ASKVYYNLGEY+ AVKYALAA + +IDE+SQ+VETIVS+SIEMY++ AS Y +
Sbjct: 61 AALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKD 120
Query: 121 PVE-----IDPHLVSIFERMLKKCVSSGEYKLALGIALESYRLDVVEKLLTS---QDTST 172
IDP L SIFERM++KC+ + E KLALGIALE YRLD++E L S QD+++
Sbjct: 121 EQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTS 180
Query: 173 NALKLCSYTLAVCTTALTNTRFKLSVLKKLYEIVMNMPAPDYFIISKIIVQLNDIEFAKE 232
+K+ +Y L + T +TN++F+ S+L+K ++ +MNMP DY ++K++V LND A +
Sbjct: 181 ENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQ 240
Query: 233 LFFKLNSTKSYDVSYQIAFDLVNSASQGLLKDLSNSLDANVYDPKLLEILSGIPTCDLQN 292
LF KL +S QIAFDLV+SASQ LL+ L L A YDP LL ILSG+PTCD N
Sbjct: 241 LFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDYYN 300
Query: 293 TFLFENKTIDKALLNKMKSSLDGKFSLFHTAVSVSNAFMHAGTTDDSFIRQNLQWLGKAQ 352
TFL NK ID LLNK KSSLDGKFSLFHTAVSV+N FMHAGTTD+SFI+ NL WLGKAQ
Sbjct: 301 TFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQ 360
Query: 353 NWAKFTATASLGVIHQGNLSDGRKIMEPYLPGNGSKSRYIKGGSLYGLGLIFAGYGKEST 412
NWAKFTATASLGVIH+GNL +G+K+M PYLPG+ + SR+IKGGSLYGLGLI+AG+G+++T
Sbjct: 361 NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTT 420
Query: 413 DYLKEQIQANSSSVGEEDVDVLLHGACLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXXXX 472
DYLK I NS + G+EDVDVLLHGA LGIGL+ MGS ++ V E LKEVLY DSA
Sbjct: 421 DYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEA 480
Query: 473 XXXXXXXXXXXXXNQTVIQDLLTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLL 532
I D+ TY++ETQHGNITR L++ LALINYG++ELADDLI K+L
Sbjct: 481 AALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKML 540
Query: 533 ASENALLRYGGAYTIALAHAGTGNNKAVKKLLHXXXXXXXXXXXXXXXXXLGFVLIREYT 592
AS+ +LLRYGGA+TIALA+AGTGNN AVK+LLH LGFVL+R+YT
Sbjct: 541 ASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT 600
Query: 593 TVPRIVELLSKSHNAHVRCGTAFALGVSCAGRGLQAAVDVLEPLLKDPVDYVRQAAMIAT 652
TVPRIV+LLSKSHNAHVRCGTAFALG++CAG+GLQ+A+DVL+PL KDPVD+VRQAAMIA
Sbjct: 601 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 660
Query: 653 SMILIQQTEKTNSKVKEVNEQFMSVIGNKHQEGLAKFGACIAQGIMNAGGRNVTIELENT 712
SMILIQQTEK N +V ++N+ F+SVI NKHQEGLAKFGAC+AQGIMNAGGRNVTI+LEN
Sbjct: 661 SMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENA 720
Query: 713 EMGTLNSRSIIGLMMFSQFWYWFPLSHFLSLSFTPTTLVGLRASDLAIPKFAFKCHTKEG 772
+ GTL+++S++GL+MFSQFWYWFPL+HFLSLSFTPTT++G+R SD AIPKF C+ KE
Sbjct: 721 DTGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKED 780
Query: 773 IFTYPRMYEEEVDKNIEKFAAAVLSTTXXXXXXXXXXXXXXX-XXXXXXDAXXXXXXXXX 831
F+YPRMYEE K +EK A AVLSTT
Sbjct: 781 AFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERE 840
Query: 832 XXXXXXXXXXXXXXXXXXXXYTTTSYDVENLTRVLPQQLKFISFAKDSRFVPVRKFRGNS 891
Y++ Y V+N+TR+LPQQ ++ISF KD RFVPVRKF+GN+
Sbjct: 841 TNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNN 900
Query: 892 GVIIVEDKTPEEPLELIKTVRQTKDIYAPLPSSFKVEDSLEF 933
GV+++ D+ P+EP+ LI+TVRQ KD+ APLP+ FKV+D+++F
Sbjct: 901 GVVVLRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDF 942
>SPBC17D11.07c [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 965
Score = 627 bits (1618), Expect = e-179
Identities = 361/939 (38%), Positives = 526/939 (55%), Gaps = 44/939 (4%)
Query: 3 VTSALPLLALLKESDNTVKTHALQSIKDVVDQQWSEISNDITEIEALYDDVSFPDRRLAA 62
+TSA L+ALL E + ++ HAL I + +DQ W EIS+D+T+IE +Y+D SFP+R LAA
Sbjct: 12 ITSAGGLMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVMYEDHSFPERELAA 71
Query: 63 IVASKVYYNLGEYQLAVKYALAAGEYLNIDEQSQYVETIVSQSIEMYIEFASSNYESEPV 122
+V SKVYY LGEY A+ +AL++G D+ S Y ET++ + I+M+I ++ Y++
Sbjct: 72 LVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFKCIDMFIHKSAELYKNPKA 131
Query: 123 E-IDPHLVSIFERMLKKCVSSGEYKLALGIALESYRLDVVEKLLTSQDTSTNALKLCSYT 181
+ +D L + E + +KC + E++ LGIA+E++RLD++E +L + D T+ L Y
Sbjct: 132 DPLDERLSGVVEGIFQKCYAKNEWRHVLGIAIEAHRLDIIEYILNA-DKETD---LKPYV 187
Query: 182 LAVCTTALTNTRFKLSVLKKLYEIVMNMPAPDYFIISKIIVQLNDIEFAKELFFKL---N 238
L + T + + F+ +L+ L + PDYF + K +V LND A +L KL N
Sbjct: 188 LELAMTVVLDIEFRNRLLRLLLSSFLTETEPDYFSVGKCVVHLNDASVAAKLLMKLSSQN 247
Query: 239 STKSYDVSYQIAFDLVNSASQGLLKDLSNSL----------DANVYDPK--------LLE 280
KS +YQ+AFDL +SA Q L + + L DAN K ++
Sbjct: 248 DDKSLLTAYQLAFDLEDSAPQEFLNSVMDLLPSPSVANSEEDANADSKKEDSSPCGYIIR 307
Query: 281 ILSGIPTCDLQNTFLFENKTIDKALLNKMKSSLDGKFSLFHTAVSVSNAFMHAGTTDDSF 340
ILSG T FL+ + D +LN+ K SL+ + S+FH AV+ +NAFM+ GT+ DSF
Sbjct: 308 ILSGEQTVKYDREFLYAHNNTDMLILNRTKDSLEARNSVFHNAVTFANAFMNFGTSSDSF 367
Query: 341 IRQNLQWLGKAQNWAKFTATASLGVIHQGNLSDGRKIMEPYLPGNG--SKSRYIKGGSLY 398
R NL WL KA NW+KFTATA+LGVIH+G + I+ PYLP S S Y +GG+ Y
Sbjct: 368 FRDNLSWLSKANNWSKFTATAALGVIHRGYYNQAMNILRPYLPEEDAPSSSTYSEGGAFY 427
Query: 399 GLGLIFAGYGKESTDYLKEQIQANSSSVGEEDVDVLLHGACLGIGLSGMGSDDVNVCEML 458
+GLI A +G+ T+YL+EQ++ +++ +G LGIGL+GM S D + E +
Sbjct: 428 AMGLIHANHGRGVTEYLREQLKHTED-------EIVQYGLLLGIGLTGMASRDETLYESV 480
Query: 459 KEVLYGDSAKXXXXXXXXXXXXXXXXXNQTVIQDLLTYAEETQHGNITRSLSIALALINY 518
K +L+ D+A + I ++L YA ETQH I R L I +ALI Y
Sbjct: 481 KTILFNDNAVAGSAAGISMGLIMLGTASSAAIDEMLQYAHETQHEKIIRGLGIGIALIVY 540
Query: 519 GKEELADDLIDKLLASENALLRYGGAYTIALAHAGTGNNKAVKKLLHXXXXXXXXXXXXX 578
G+++ AD +I +L + LRY G + ALA+ GT N+K V+ +LH
Sbjct: 541 GRQQEADGIIKELNNDLDPTLRYAGMFATALAYCGTSNSKIVRDVLHISVSDVNDDVRRA 600
Query: 579 XXXXLGFVLIREYTTVPRIVELLSKSHNAHVRCGTAFALGVSCAGRGLQAAVDVLEPLLK 638
LGF+ ++ + VELL S+N HVR G+A ALG++CA G AA+D+L L++
Sbjct: 601 AVCALGFICFKDPNALISTVELLVDSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVE 660
Query: 639 DPVDYVRQAAMIATSMILIQQTEKTNSKVKEVNEQFMSVIGNKHQEGLAKFGACIAQGIM 698
D D+VRQ AMIA +MIL Q ++ NSKV + + F VI KH++ LAK GA +AQGI+
Sbjct: 661 DATDFVRQGAMIAQAMILTQHNDQLNSKVSGIRKHFEQVINEKHEDALAKLGATLAQGII 720
Query: 699 NAGGRNVTIELENTEMGTLNSRSIIGLMMFSQFWYWFPLSHFLSLSFTPTTLVGLRASDL 758
+AGGRNVTI L+ T G+L +I+GL +F Q+WYWFPL+HF+SLSF+PT L+GL +L
Sbjct: 721 DAGGRNVTIALQ-TATGSLKLSAIVGLTVFLQYWYWFPLTHFMSLSFSPTALIGL-DKNL 778
Query: 759 AIPKFAFKCHTKEGIFTYPRMYEEEVDKNIEKFAAAVLSTTXXXXXXXXXXXXXXXXXXX 818
PKF+F + + +F YP + K ++K AVLSTT
Sbjct: 779 NAPKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRAEREKASKGS 838
Query: 819 XXDAXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXYTTTSYDVENLTRVLPQQLKFI 873
D S +EN TRV+P QL +I
Sbjct: 839 NDDEMKIDKKTTEEKEATPMEMDEEKSQDISINGNSKKEEPKSETLENFTRVVPAQLPYI 898
Query: 874 SFAKDSRFVPVRKFRGNSGVIIVEDKTPEEPLELIKTVR 912
SF + R+ PVRKF G GV+++ D+ ++ +LI+ R
Sbjct: 899 SFNLNGRYYPVRKFTG--GVLMLIDRESDKAPDLIELNR 935
>Hs4506225 [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 953
Score = 598 bits (1542), Expect = e-170
Identities = 349/961 (36%), Positives = 530/961 (54%), Gaps = 86/961 (8%)
Query: 3 VTSALPLLALLKESDNTVKTHALQSIKDVVDQQWSEISNDITEIEALYDDVSFPDRRLAA 62
+TSA +++LL E + +K AL + VV+ W+EIS + +IE LY+D F R+ AA
Sbjct: 2 ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61
Query: 63 IVASKVYYNLGEYQLAVKYALAAGEYLNIDEQSQYVETIVSQSIEMYIEFASSNY---ES 119
+VASKV+Y+LG ++ ++ YAL A + N+++ S+YVETI+++ I+ Y + N E
Sbjct: 62 LVASKVFYHLGAFEESLNYALGARDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121
Query: 120 EPVEIDPHLVSIFERMLKKCVSSGEYKLALGIALESYRLDVVEKLLTSQDTSTNALKLCS 179
E ID L I +M ++C+ +YK A+GIALE+ RLDV EK + S + + +
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILE---SNDVPGMLA 178
Query: 180 YTLAVCTTALTNTRFKLSVLKKLYEIVMNMPAPDYFIISKIIVQLNDIEFAKELFFKLNS 239
Y+L +C + + N +F+ VL+ L +I MN+ PD+ + + ++ L+D + ++ KL
Sbjct: 179 YSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK 238
Query: 240 TKSYDVSYQIAFDLVNSASQGLLKDLSNSL------------------------DANVYD 275
+ ++YQI FDL SASQ L + +L D++ +
Sbjct: 239 EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSME 298
Query: 276 P------------------------KLLEILSGIPTCDLQNTFLFENKTIDKALLNKMKS 311
K+++ILSG +L FL N D +L K
Sbjct: 299 TEEKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKD 358
Query: 312 SLDGKFSLFHTAVSVSNAFMHAGTTDDSFIRQNLQWLGKAQNWAKFTATASLGVIHQGNL 371
++ + S+ HTA ++N+FMH GTT D F+R NL+WL +A NWAKFTATASLGVIH+G+
Sbjct: 359 AV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHE 416
Query: 372 SDGRKIMEPYLPGNGSK-SRYIKGGSLYGLGLIFAGYGKESTDYLKEQIQANSSSVGEED 430
+ ++M YLP + S S Y +GG LY LGLI A +G + DYL Q++ S+
Sbjct: 417 KEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASN------ 470
Query: 431 VDVLLHGACLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXXXXXXXXXXXXXXXXXNQTVI 490
D++ HG LG+GL+ MG+ +V ++LK LY D A N I
Sbjct: 471 -DIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAI 529
Query: 491 QDLLTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLLASENALLRYGGAYTIALA 550
+D++ YA+ETQH I R L++ +AL+ YG+ E AD LI+ L ++ +LR G YT+A+A
Sbjct: 530 EDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMA 589
Query: 551 HAGTGNNKAVKKLLHXXXXXXXXXXXXXXXXXLGFVLIREYTTVPRIVELLSKSHNAHVR 610
+ G+GNNKA+++LLH LGF+L R P +V LLS+S+N HVR
Sbjct: 590 YCGSGNNKAIRRLLHVAVSDVNDDVRSAAVESLGFILFRTPEQCPSVVSLLSESYNPHVR 649
Query: 611 CGTAFALGVSCAGRGLQAAVDVLEPLLKDPVDYVRQAAMIATSMILIQQTEKTNSKVKEV 670
G A ALG+ CAG G + A+++LEP+ DPV+YVRQ A+IA+++I+IQQTE T KV +
Sbjct: 650 YGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQF 709
Query: 671 NEQFMSVIGNKHQEGLAKFGACIAQGIMNAGGRNVTIELENTEMGTLNSRSIIGLMMFSQ 730
+ + VI +KH + +AKFGA +AQGI++AGG NVTI L+ + G + S++G+++F+Q
Sbjct: 710 RQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQ-SRTGHTHMPSVVGVLVFTQ 768
Query: 731 FWYWFPLSHFLSLSFTPTTLVGLRASDLAIPKFAFKCHTKEGIFTYPRMYEEEVDKNIEK 790
FW+WFPLSHFLSL++TPT ++GL DL +PK +K + K F YP E +K EK
Sbjct: 769 FWFWFPLSHFLSLAYTPTCVIGLN-KDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEK 827
Query: 791 FAAAVLSTTXXXXXXXXXXXXXXXXXXXXXDAXXXXXXXXXXXXXXXXXXXXXXXXXXXX 850
+ AVLS T +A
Sbjct: 828 VSTAVLSITAKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQL---------- 877
Query: 851 XYTTTSYDVENLTRVLPQQLKFISFAKDSRFVPVRKFRGNSGVIIVEDKTPEEPLELIKT 910
++N RV+P QLK ++ + R+ P + G+II++D T E+ EL++
Sbjct: 878 --------LDNPARVMPAQLKVLTMPETCRYQPFKPL-SIGGIIILKD-TSEDIEELVEP 927
Query: 911 V 911
V
Sbjct: 928 V 928
>At1g04810 [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 1001
Score = 597 bits (1539), Expect = e-170
Identities = 351/961 (36%), Positives = 525/961 (54%), Gaps = 75/961 (7%)
Query: 3 VTSALPLLALLKESDNTVKTHALQSIKDVVDQQWSEISNDITEIEALYDDVSFPD--RRL 60
V+SA LLA+L E ++K HAL + +VDQ W EIS + IE+LY+D F R+L
Sbjct: 6 VSSAGGLLAMLNEPHPSLKLHALSYLIRLVDQFWPEISTSVPIIESLYEDEEFDQHQRQL 65
Query: 61 AAIVASKVYYNLGEYQLAVKYALAAGEYLNIDEQSQYVETIVSQSIEMYIEFASSNYES- 119
AA++ASKV+Y LGE ++ YAL AG ++ E S Y+ T++S++I+ Y S ES
Sbjct: 66 AALLASKVFYYLGELNDSLSYALGAGSLFDVSEDSDYIHTLLSKAIDEYAILRSKAVESS 125
Query: 120 EPVEIDPHLVSIFERMLKKCVSSGEYKLALGIALESYRLDVVEKLLTSQDTSTNALKLCS 179
E VEIDP LV+I ERML KC++ G+Y+ A+GIA+E RLD +E+ + S N S
Sbjct: 126 EVVEIDPRLVAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAIIK---SENVQGTLS 182
Query: 180 YTLAVCTTALTNTRFKLSVLKKLYEIVMNMPAPDYFIISKIIVQLNDIEFAKELFFKLNS 239
Y + V + + ++ VL+ L + + +PDY I + ++ L++ + + KL
Sbjct: 183 YCINVSHSFVNQREYRHEVLRLLVNVYQKLASPDYLSICQCLMFLDEPQGVASILEKLLR 242
Query: 240 TKSYD---VSYQIAFDLVNSASQGLLKDLSNSLDA------------------------- 271
+++ D +++QI+FDLV + Q L + + L A
Sbjct: 243 SENKDDALLAFQISFDLVQNEHQAFLMSVRDRLPAPKTRPVEAIQAVETSTAQNENTAGD 302
Query: 272 --------------------NVYDPKLLE---ILSGIPTCDLQNTFLFENKTIDKALLNK 308
VY +L + ILSG + L FL+ + D +L
Sbjct: 303 VQMADETPSQTIVHETDPVDAVYAERLTKAKGILSGETSIQLTLQFLYSHNKSDLLILKT 362
Query: 309 MKSSLDGKFSLFHTAVSVSNAFMHAGTTDDSFIRQNLQWLGKAQNWAKFTATASLGVIHQ 368
+K S++ + S+ H+A +NA MHAGTT D+F+R+NL WL +A NWAKF+ATA LGVIH+
Sbjct: 363 IKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHR 422
Query: 369 GNLSDGRKIMEPYLP---GNGSKSRYIKGGSLYGLGLIFAGYGKESTDYLKEQIQANSSS 425
G+L GR +M PYLP G S Y +GG+LY LGLI A +G+ +L++ +++ S
Sbjct: 423 GHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTS-- 480
Query: 426 VGEEDVDVLLHGACLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXXXXXXXXXXXXXXXXX 485
V+V+ HGACLG+GL+ +G+ D ++ + +K VLY DSA
Sbjct: 481 -----VEVIQHGACLGLGLAALGTADEDIYDDIKSVLYTDSAVAGEAAGISMGLLLVGTA 535
Query: 486 NQTVIQDLLTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLLASENALLRYGGAY 545
++L YA ETQH I R L++ +AL YG+EE AD LI+++ ++ ++RYGG Y
Sbjct: 536 TDKA-SEMLAYAHETQHEKIIRGLALGIALTVYGREEGADTLIEQMTRDQDPIIRYGGMY 594
Query: 546 TIALAHAGTGNNKAVKKLLHXXXXXXXXXXXXXXXXXLGFVLIREYTTVPRIVELLSKSH 605
+ALA++GT NNKA+++LLH LGFVL + PRIV LLS+S+
Sbjct: 595 ALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSDPEQTPRIVSLLSESY 654
Query: 606 NAHVRCGTAFALGVSCAGRGLQAAVDVLEPLLKDPVDYVRQAAMIATSMILIQQTEKTNS 665
N HVR G A A+G+SCAG GL A+ +LEPL D VD+VRQ A+IA +M+++Q +E ++S
Sbjct: 655 NPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDS 714
Query: 666 KVKEVNEQFMSVIGNKHQEGLAKFGACIAQGIMNAGGRNVTIE-LENTEMGTLNSRSIIG 724
+V Q +I +KH++ ++K GA +A GI++AGGRNVTI L T+ + ++IG
Sbjct: 715 RVGAFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKVT--AVIG 772
Query: 725 LMMFSQFWYWFPLSHFLSLSFTPTTLVGLRASDLAIPKFAFKCHTKEGIFTYPRMYEEEV 784
L +FSQFWYW+PL +F+SL+F+PT +GL DL +PKF F H K +F YP+
Sbjct: 773 LTVFSQFWYWYPLIYFISLAFSPTAFIGLN-YDLKVPKFEFMSHAKPSLFEYPKPTTVAT 831
Query: 785 DKNIEKFAAAVLSTTXXXXXXXXXXXXXXXXXXXXXDAXXXXXXXXXXXXXXXXXXXXXX 844
K AVLST+ +
Sbjct: 832 ANTAAKLPTAVLSTSAKAKAKAKKEAEQKAKAENSGNEAGKANAASDEKEAESMQVDSTA 891
Query: 845 XXXXXXXYTTTSYDV-ENLTRVLPQQLKFISFAKDSRFVPVRKFRGNSGVIIVEDKTPEE 903
++++ N RV+P Q K+I +DSR+VP++ SG +++ D P E
Sbjct: 892 TTVEKKVEPEATFEILVNPARVVPSQEKYIKLMEDSRYVPMK--LAPSGFVLLRDLRPHE 949
Query: 904 P 904
P
Sbjct: 950 P 950
>At2g32730 [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 1004
Score = 588 bits (1516), Expect = e-167
Identities = 351/968 (36%), Positives = 524/968 (53%), Gaps = 82/968 (8%)
Query: 3 VTSALPLLALLKESDNTVKTHALQSIKDVVDQQWSEISNDITEIEALYDDVSFP--DRRL 60
V+SA LLA+L E +K HAL ++ ++VDQ W EIS + IE+LY+D F R+L
Sbjct: 6 VSSAGGLLAMLNEPHPVLKLHALSNLNNLVDQFWPEISTSVPIIESLYEDEEFDLHQRQL 65
Query: 61 AAIVASKVYYNLGEYQLAVKYALAAGEYLNIDEQSQYVETIVSQSIEMYIEFASSNYES- 119
AA++ SKV+Y LGE ++ YAL AG ++ E S YV T+++++I+ Y S ES
Sbjct: 66 AALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLRSKAVESN 125
Query: 120 EPVEIDPHLVSIFERMLKKCVSSGEYKLALGIALESYRLDVVEKLLTSQDTSTNALKLCS 179
E V+IDP L +I ERML KC+S G+Y+ A+GIA+E RLD +E+ + D L S
Sbjct: 126 EMVDIDPRLEAIVERMLGKCISDGKYQQAMGIAIECRRLDKLEEAIIKSDNVQGTL---S 182
Query: 180 YTLAVCTTALTNTRFKLSVLKKLYEIVMNMPAPDYFIISKIIVQLNDIEFAKELFFKLNS 239
Y + V + + ++ VL L ++ +P+PDY I + ++ L++ + + KL
Sbjct: 183 YCINVSHSFVNRREYRHEVLSLLVKVYQKLPSPDYLSICQCLMFLDEPQGVASILEKLLR 242
Query: 240 TKSYD---VSYQIAFDLVNSASQGLLKDLSNSLDA------------------------- 271
+++ D ++ QIAFDLV + Q L + + L A
Sbjct: 243 SENKDDALLALQIAFDLVENEHQAFLLSVRDRLPAPKTRAVEATQAVETTIAPNENPSGD 302
Query: 272 -------------NVYDP----------KLLEILSGIPTCDLQNTFLFENKTIDKALLNK 308
+ DP K+ ILSG + L FL+ + D +L
Sbjct: 303 VQMADETPAQTIVHETDPVDATYAERLTKIKGILSGETSIQLTLQFLYSHNKSDLLILKT 362
Query: 309 MKSSLDGKFSLFHTAVSVSNAFMHAGTTDDSFIRQNLQWLGKAQNWAKFTATASLGVIHQ 368
+K S++ + S+ H+A +NA MHAGTT D+F+R+NL WL +A NWAKF+ATA LGVIH+
Sbjct: 363 IKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHR 422
Query: 369 GNLSDGRKIMEPYLP---GNGSKSRYIKGGSLYGLGLIFAGYGKESTDYLKEQIQANSSS 425
G+L GR +M PYLP G S Y +GG+LY LGLI A +G+ +L++ +++
Sbjct: 423 GHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRST--- 479
Query: 426 VGEEDVDVLLHGACLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXXXXXXXXXXXXXXXXX 485
+V+V+ HGACLG+GLS +G+ D + + +K VLY DSA
Sbjct: 480 ----NVEVIQHGACLGLGLSALGTADEEIYDDVKSVLYTDSAVAGEAAGISMGLLLVGTA 535
Query: 486 NQTVIQDLLTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLLASENALLRYGGAY 545
+ ++L YA ETQH I R L++ +AL YG+EE AD LI+++ ++ ++RYGG Y
Sbjct: 536 TEKA-SEMLAYAHETQHEKIIRGLALGIALTVYGREEGADTLIEQMTRDQDPIIRYGGMY 594
Query: 546 TIALAHAGTGNNKAVKKLLHXXXXXXXXXXXXXXXXXLGFVLIREYTTVPRIVELLSKSH 605
+ALA++GT NNKA+++LLH LGFVL + PRIV LLS+S+
Sbjct: 595 ALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSDPEQTPRIVSLLSESY 654
Query: 606 NAHVRCGTAFALGVSCAGRGLQAAVDVLEPLLKDPVDYVRQAAMIATSMILIQQTEKTNS 665
N HVR G A A+G+SCAG GL A+ +LEPL D VD+VRQ A+IA +M+++Q +E ++S
Sbjct: 655 NPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDS 714
Query: 666 KVKEVNEQFMSVIGNKHQEGLAKFGACIAQGIMNAGGRNVTIE-LENTEMGTLNSRSIIG 724
+V Q +I +KH++ ++K GA +A GI++AGGRNVTI L T+ + ++IG
Sbjct: 715 RVGVFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKVT--AVIG 772
Query: 725 LMMFSQFWYWFPLSHFLSLSFTPTTLVGLRASDLAIPKFAFKCHTKEGIFTYPRMYEEEV 784
L +FSQFWYW+PL +F+SL+F+PT +GL DL +PKF F H K +F YP+
Sbjct: 773 LAVFSQFWYWYPLIYFISLAFSPTAFIGLN-YDLKVPKFEFMSHAKPSLFEYPKPTTVPT 831
Query: 785 DKNIEKFAAAVLSTTXXXXXXXXXXXXXXXXXXXXX-------DAXXXXXXXXXXXXXXX 837
K AVLST+ ++
Sbjct: 832 ANTAVKLPTAVLSTSVKAKARAKKEAEQKAIAEKTSGPEKPVNESGSGKGKASTEKEGDS 891
Query: 838 XXXXXXXXXXXXXXYTTTSYDV-ENLTRVLPQQLKFISFAKDSRFVPVRKFRGNSGVIIV 896
++++ N RV+P Q K+I DSR+VPV+ SG +++
Sbjct: 892 MQVDSPAAVEKKAPEPEPAFEILVNPARVVPAQEKYIKLLDDSRYVPVK--LAPSGFVLL 949
Query: 897 EDKTPEEP 904
+D EP
Sbjct: 950 KDLREHEP 957
>7301756 [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 1020
Score = 549 bits (1414), Expect = e-156
Identities = 320/864 (37%), Positives = 490/864 (56%), Gaps = 81/864 (9%)
Query: 1 MSVTSALPLLALLKESDNTVKTHALQSIKDVVDQQWSEISNDITEIEALYDDVSFPDRRL 60
MS+TSA +++LL E +K AL+ + ++VD+ W EIS I +IE L++D SFP+ +L
Sbjct: 1 MSLTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPENKL 60
Query: 61 AAIVASKVYYNLGEYQLAVKYALAAGEYLNIDEQSQYVETIVSQSIEMYI----EFASSN 116
A +VASKV+Y+LG ++ A+ YAL AG+ +++ +++Y ETI+++ I+ YI EF +
Sbjct: 61 AGMVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAKCIDFYIAQRVEFIENP 120
Query: 117 YESEPVEIDPHLVSIFERMLKKCVSSGEYKLALGIALESYRLDVVEKLLTSQDTSTNALK 176
E+ V D L I RM+++C+ +++ ALGIALE+ R+D + + D L
Sbjct: 121 KEASVV--DERLEGIVNRMIQRCLDDNQFRQALGIALETRRMDTFKDAIMKSDDVRGML- 177
Query: 177 LCSYTLAVCTTALTNTRFKLSVLKKLYEIVMNMPAPDYFIISKIIVQLNDIEFAKELFFK 236
+Y V + + N F+ VL+ L + ++ PDY + + ++ L D E+
Sbjct: 178 --AYAYNVTMSLIQNRGFRNEVLRCLVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDN 235
Query: 237 LNSTK---SYDVSYQIAFDLVNSASQGLLKDLSNSLDANVYDPKLL-------------- 279
L + + ++YQIAFDL SA+Q L ++ L P L
Sbjct: 236 LTRSSVETNNLMAYQIAFDLYESATQEFLGNVLQHLKNTAPIPTALPSTFKPQGTTSEDG 295
Query: 280 ------------EILSGIPTCD-LQNTF--LFENKTIDKALLNKMKSSLDG--------- 315
+I P D ++ T L E + + + + K+ S L G
Sbjct: 296 AKSEGDKSKSDEDITEETPADDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSIDLQLQ 355
Query: 316 --------------------KFSLFHTAVSVSNAFMHAGTTDDSFIRQNLQWLGKAQNWA 355
+ S+ HTA ++NAFMH+GTT D F+R NL WL +A NWA
Sbjct: 356 FLIRSNHADLQVLRGTKEAVRVSICHTATVIANAFMHSGTTSDQFLRDNLDWLARATNWA 415
Query: 356 KFTATASLGVIHQGNLSDGRKIMEPYLPGN-GSKSRYIKGGSLYGLGLIFAGYGKESTDY 414
K TATASLGVIH+G+ D +M+ YLP G S Y +GG+LY LGLI A +G DY
Sbjct: 416 KLTATASLGVIHRGHEKDSLALMQSYLPKEAGPSSGYSEGGALYALGLIHANHGANIIDY 475
Query: 415 LKEQIQANSSSVGEEDVDVLLHGACLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXXXXXX 474
L +Q++ + + + HG CLG+GL+GMG+ ++ E LK LY D A
Sbjct: 476 LLQQLK-------DAQNENVRHGGCLGLGLAGMGTHRQDLYEQLKFNLYQDDAVTGEAAG 528
Query: 475 XXXXXXXXXXXNQTVIQDLLTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLLAS 534
N I+D+++YA+ETQH I R L++ ++L + + E AD L+ L +
Sbjct: 529 IAMGMVMLGSKNAQAIEDMVSYAQETQHEKILRGLAVGISLTMFSRLEEADPLVTSLSSD 588
Query: 535 ENALLRYGGAYTIALAHAGTGNNKAVKKLLHXXXXXXXXXXXXXXXXXLGFVLIREYTTV 594
++ +LR G YTIA+A+ GTG+NKA++KLLH +GF+L R
Sbjct: 589 KDPVLRRSGMYTIAMAYNGTGSNKAIRKLLHVAVSDVNDDVRRAAVTAIGFILFRSPEQC 648
Query: 595 PRIVELLSKSHNAHVRCGTAFALGVSCAGRGLQAAVDVLEPLLK-DPVDYVRQAAMIATS 653
P +V LL++S+N HVR G A ALG++CAG GL+ A+ +LEP++K DPV++VRQ A+IA++
Sbjct: 649 PSVVSLLAESYNPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPVNFVRQGALIASA 708
Query: 654 MILIQQTEKTNSKVKEVNEQFMSVIGNKHQEGLAKFGACIAQGIMNAGGRNVTIELENTE 713
MILIQ T+++ K + + VI NKH++ +AK+GA +AQGI++AGGRN T+ L+ +
Sbjct: 709 MILIQHTDQSCPKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLSLQ-SR 767
Query: 714 MGTLNSRSIIGLMMFSQFWYWFPLSHFLSLSFTPTTLVGLRASDLAIPKFAFKCHTKEGI 773
G N ++++G++ F+Q+WYWFPL+H LSL+FTPT ++GL SDL +PK +K K +
Sbjct: 768 TGHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLN-SDLKMPKMEYKSAAKPSL 826
Query: 774 FTYPRMYEEEVDKNIEKFAAAVLS 797
+ YP EE+ + EK A AVLS
Sbjct: 827 YAYPAPLEEKKSEEREKVATAVLS 850
>CE24810 [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 989
Score = 360 bits (925), Expect = 4e-99
Identities = 249/902 (27%), Positives = 417/902 (45%), Gaps = 62/902 (6%)
Query: 30 DVVDQQWSEISNDITEIEALYDDVSFPDRRLAAIVASKVYYNLGEYQLAVKYALAAGEY- 88
DV+ W E+++ + +E L D+ +FP+ AA++ SKVY+ L +Y+ A+++AL G++
Sbjct: 85 DVLVNTWFEVADALPAVEQLLDNNTFPEHSSAALLVSKVYFCLEQYERALEFALR-GDFN 143
Query: 89 ------LNIDEQSQYVETIVSQSIEMYIEFASSNYESEPVEIDPHLVSIFERMLKKCVSS 142
+ ++YV I+ +I+ Y + I L + +R++ + +
Sbjct: 144 VVPATRTGLGNDAEYVNKIIETAIDTY-----KTLSKQGSGIPQKLRDLIDRIVARNLDK 198
Query: 143 GEYKLALGIALESYRLDVVEKLLTSQD---TSTNALKLCSYTLAVCTTALTNTRFKLSVL 199
E + + E+ L ++++ +++ T N L TL + F+ V+
Sbjct: 199 REIWFVISLGFETTNLAMIDRAISAMPADLTIKNQTTLVE-TLNRVVNGAFDRSFRFQVI 257
Query: 200 KKLYEIVMNMPAPDYFIISKIIVQLNDIEFAKELFFKLNSTKSYDVSYQIAFDLVNSASQ 259
+ + + P+PD I + V ++ E A + L + +YQIAFDL +ASQ
Sbjct: 258 DTVIKTYLKCPSPDMSKICECYVLTDNAEAAADTITSLIAKSLSTRAYQIAFDLYETASQ 317
Query: 260 GLL-KDLSNSLDANVYDPKLLE----ILSGIPTCDLQNTFLFENKTIDKALLNKMKSSLD 314
G L + L + D K +E IL G T F + D L+ ++K ++
Sbjct: 318 GFLDRVLKRFQQQDARDEKSMEKIHSILKGHETVKAYLDFFVRHNHTDSVLMEEIKENI- 376
Query: 315 GKFSLFHTAVSVSNAFMHAGTTDDSFIRQNLQWLGKAQNWAKFTATASLGVIHQGNLSDG 374
+ + H A+ +SN M GTT D F+R NL W+ KA NW KF A ASLG+IH G S
Sbjct: 377 -RTASAHNALLISNGLMQYGTTCDDFLRNNLNWVSKATNWNKFNAVASLGLIHHGQESSA 435
Query: 375 RKIMEPYLPGNGSKSRYIK-GGSLYGLGLIFAGYGKESTDYLKEQIQANSSSVGEEDVDV 433
K++EPYLP + K GG++ GLI A +G + Q + + +
Sbjct: 436 MKVLEPYLPKESVEGFGFKEGGAMLAYGLIHAKHGDATAMSTLAQWLKTAEN------EP 489
Query: 434 LLHGACLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXXXXXXXXXXXXXXXXXNQTVIQDL 493
+ HGACLG G++G+GS V+ E ++EVL D A NQ V +L
Sbjct: 490 VRHGACLGFGVAGLGSSSVSNYEKVREVLQRDEAVSGESAGIAMGLIMAGHLNQEVFNEL 549
Query: 494 LTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLL-ASENALLRYGGAYTIALAHA 552
Y +TQH R + LA +G + A+ I + + A N +LR G +++A+A
Sbjct: 550 KQYTVDTQHDKTQRGIRTGLACAAFGLQGDAEPYIKEAIGAKSNPMLRSTGICMLSMAYA 609
Query: 553 GTGNNKAVKKLLHXXXXXXXXXXXXXXXXXLGFVLIREYTTVPRIVELLSKSHNAHVRCG 612
VK+ +GFVL ++ +T V +L++ N HVR G
Sbjct: 610 EPDLQMYVKRY---------------ATIGIGFVLSKDPSTCLSYVAMLTEHFNGHVRYG 654
Query: 613 TAFALGVSCAGRGLQAAVDVLEPLLKDPVDYVRQAAMIATSMILIQQTEKTNSKVKEVNE 672
A ALG++CAG G A+ ++EP++ D +VR+ A+++ ++I+ QQT+ T KV +
Sbjct: 655 AAMALGIACAGTGNMEAIALIEPMISDKEGFVRKGALLSLALIMCQQTDYTCPKVNGFRK 714
Query: 673 QFMSVIGNKHQEGLAKFGACIAQGIMNAGGRNVTIELENTEMGTLNSRSIIGLMMFSQFW 732
Q + IG K+++ L KFGA IAQG+++ GG+N + ++N++ + S++G+M F W
Sbjct: 715 QLLKKIGEKNEDSLVKFGAIIAQGLLDIGGQNAAVTMQNSDKQP-DMGSMVGMMCFLHGW 773
Query: 733 YWFPLSHFLSLSFTPTTLVGLRASDLAIPKFAFKCHTKEGIFTYPRMYEEEVDKNIEKFA 792
+W + F++L+ P+ LV + +L IP + CH F YP E + DK+++K
Sbjct: 774 FWHSMHFFIALAAKPSCLV-MMNENLKIPVLDYICHANSQKFAYPPRAESKKDKDVKKIE 832
Query: 793 AAVLSTTXXXXXXXXXXXXXXXXXXXXXDAXXXXXXXXXXXXXXXXXXX----------- 841
VLS T A
Sbjct: 833 TVVLSITGKKNASKKLIAEEKKRREAAASASSAAAAPSSSSTSGTAPAAEDEKMEVDQPG 892
Query: 842 XXXXXXXXXXYTTTSYDVENLTRVLPQQLKFISFAKDSRFVPVRKFRGNSGVIIVEDKTP 901
T + ++N RV+P Q + IS + + P++ G IIV D+
Sbjct: 893 KSKKEKAPEKDTKPLHRLQNPARVIPAQRQLISISDARAYSPMKPL--YKGGIIVADRVD 950
Query: 902 EE 903
+E
Sbjct: 951 KE 952
>CE04049 [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 615
Score = 216 bits (549), Expect = 2e-55
Identities = 151/540 (27%), Positives = 257/540 (46%), Gaps = 32/540 (5%)
Query: 30 DVVDQQWSEISNDITEIEALYDDVSFPDRRLAAIVASKVYYNLGEYQLAVKYALAAGEY- 88
DV+ W E+++ + +E L D+ +FP+ AA++ SKVY+ L +Y+ A+++AL G++
Sbjct: 85 DVLVNTWFEVADALPAVEQLLDNNTFPEHSSAALLVSKVYFCLEQYERALEFALR-GDFN 143
Query: 89 ------LNIDEQSQYVETIVSQSIEMYIEFASSNYESEPVEIDPHLVSIFERMLKKCVSS 142
+ ++YV I+ +I+ Y + I L + +R++ + +
Sbjct: 144 VVPATRTGLGNDAEYVNKIIETAIDTY-----KTLSKQGSGIPQKLRDLIDRIVARNLDK 198
Query: 143 GEYKLALGIALESYRLDVVEKLLTSQD---TSTNALKLCSYTLAVCTTALTNTRFKLSVL 199
E + + E+ L ++++ +++ T N L TL + F+ V+
Sbjct: 199 REIWFVISLGFETTNLAMIDRAISAMPADLTIKNQTTLVE-TLNRVVNGAFDRSFRFQVI 257
Query: 200 KKLYEIVMNMPAPDYFIISKIIVQLNDIEFAKELFFKLNSTKSYDVSYQIAFDLVNSASQ 259
+ + + P+PD I + V ++ E A + L + +YQIAFDL +ASQ
Sbjct: 258 DTVIKTYLKCPSPDMSKICECYVLTDNAEAAADTITSLIAKSLSTRAYQIAFDLYETASQ 317
Query: 260 GLL-KDLSNSLDANVYDPKLLE----ILSGIPTCDLQNTFLFENKTIDKALLNKMKSSLD 314
G L + L + D K +E IL G T F + D L+ ++K ++
Sbjct: 318 GFLDRVLKRFQQQDARDEKSMEKIHSILKGHETVKAYLDFFVRHNHTDSVLMEEIKENI- 376
Query: 315 GKFSLFHTAVSVSNAFMHAGTTDDSFIRQNLQWLGKAQNWAKFTATASLGVIHQGNLSDG 374
+ + H A+ +SN M GTT D F+R NL W+ KA NW KF A ASLG+IH G S
Sbjct: 377 -RTASAHNALLISNGLMQYGTTCDDFLRNNLNWVSKATNWNKFNAVASLGLIHHGQESSA 435
Query: 375 RKIMEPYLPGNGSKS-RYIKGGSLYGLGLIFAGYGKESTDYLKEQIQANSSSVGEEDVDV 433
K++EPYLP + + +GG++ GLI A +G + + + + + +
Sbjct: 436 MKVLEPYLPKESVEGFGFKEGGAMLAYGLIHAKHGDATA------MSTLAQWLKTAENEP 489
Query: 434 LLHGACLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXXXXXXXXXXXXXXXXXNQTVIQDL 493
+ HGACLG G++G+GS V+ E ++EVL D A NQ V +L
Sbjct: 490 VRHGACLGFGVAGLGSSSVSNYEKVREVLQRDEAVSGESAGIAMGLIMAGHLNQEVFNEL 549
Query: 494 LTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLL-ASENALLRYGGAYTIALAHA 552
Y +TQH R + LA +G + A+ I + + A N +LR G +++A+A
Sbjct: 550 KQYTVDTQHDKTQRGIRTGLACAAFGLQGDAEPYIKEAIGAKSNPMLRSTGICMLSMAYA 609
>ECU02g0480 [O] KOG2062 26S proteasome regulatory complex subunit RPN2/PSMD1
Length = 786
Score = 211 bits (536), Expect = 6e-54
Identities = 196/771 (25%), Positives = 342/771 (43%), Gaps = 88/771 (11%)
Query: 1 MSVTSALP-LLALLKESDNTVKTHALQSIKDVVDQQWSEISNDITEIEALYDDVSFPDRR 59
M LP + ALL++ ++ A+ I VD I +D+ I++ S
Sbjct: 1 MQTIRILPNIRALLRDGR---ESEAIDVINAHVDVVAPHIKDDLRYIKSSDPKTS----- 52
Query: 60 LAAIVASKVYYNLGEYQLAVKYALAAGEYLNIDEQSQYVETIVSQSIEMYIEFASSNYES 119
+ SK+Y+ L +YQ A++YAL AG+ L +D+ S Y +IV ++ S
Sbjct: 53 ---LCLSKIYFVLEDYQQAIEYALRAGDLL-VDDGSFYYTSIVYHMMD-----------S 97
Query: 120 EPVEIDPHLVSIFERMLKKCVSSGEYKLALGIALESYRL--DVVEKLLTSQDTSTNALKL 177
+ D + +++ + + ++++Y L + + K ++ + L L
Sbjct: 98 ADIGGDDRIRDFVLKVIG-AEDVDDSLIGYLFSIKAYGLLKEALVKYISDGNDCRRLLDL 156
Query: 178 CSYTLAVCTTALTNTRFKLSVLKKLYEIVMNM---PAPDYFIISKIIVQLNDIEFAKELF 234
L + + LK++Y ++ + P F + L D+E K L
Sbjct: 157 -----------LISLGEEEGCLKEIYGMLAEIGPGKKPFIFYVIDAYFYLEDVEKVKALI 205
Query: 235 FKLNSTKSYDVSYQIAFDLVNSASQGLLKDLSNSLDANVYDPKLLEILSGIPTCDLQNTF 294
+L + + Y +AF ++ S + V D +++ ILSG
Sbjct: 206 ERLVK-EDILLCYDVAFYTEDNYSP----------EIEVADQRVMSILSGE--------- 245
Query: 295 LFENKTIDKALLNKMKSSLDGKFSLFHTA---VSVSNAFMHAGTTDDSFIRQNLQWLGKA 351
F+ K + LL K +S S+ T + ++N+ M+ GT++D+ R N G++
Sbjct: 246 -FKKKILGAFLLEKNLTSFKFLESIARTRTHYLGLANSLMNLGTSNDTLYRNNADIFGQS 304
Query: 352 QNWAKFTATASLGVIHQGNLSDGRKIMEPYLPGNGSKSRYIKGGSLYGLGLIFAG-YGKE 410
WAKF+ AS+G+IH N S+ +I++ YLP S+ +GG+L LGLI AG + +E
Sbjct: 305 SEWAKFSEVASIGMIHLFN-SNPYEILKNYLPSEVSQK---EGGALMALGLIKAGTFSEE 360
Query: 411 STDYLKEQIQANSSSVGEEDVDVLLHGACLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXX 470
T+YL + + E L +G CLG+GL MGS + + LKE+ D
Sbjct: 361 DTEYLLYFLDTEDTLTPE-----LAYGVCLGLGLINMGSANREILNKLKELSKVDRTLLV 415
Query: 471 XXXXXXXXXXXXXXXNQTVIQDLLTYAEETQHGNITRSLSIALALINYGKEELADD---- 526
+ +++DL T A ET+ + R++ I+ +L+ EE+ D
Sbjct: 416 EASVYGMGMLGLNSWSVELLEDLRTIAGETEFERVKRAVGISFSLVLMFSEEMFYDECNA 475
Query: 527 -------LIDKLLASENALLRYGGAYTIALAHAGTGNNKAVKKLLHXXXXXXXXXXXXXX 579
I++LL +++++R G ++ A GTG + LL
Sbjct: 476 SNGDFKNYINELLYDKDSIMRANGVLSLGSAFVGTGRLGVISTLLPYINDGDDDVKRAAV 535
Query: 580 XXXLGFVLIREYTTVPRIVELLSKSHNAHVRCGTAFALGVSCAGRGLQAAVDVLEPLLKD 639
+G V + + +E LS++HN VR A LG+ +G G + ++LE L+ D
Sbjct: 536 IA-IGLVCCDDRDLLVGTLEPLSENHNFFVRAAVAVVLGLFLSGTGDKVCTNILEALMYD 594
Query: 640 PVDYVRQAAMIATSMILIQQTEKTNSKVKEVNEQFMSVIGNKHQEGLAKFGACIAQGIMN 699
VRQ+A I I +Q + K + E+ +I +K + G + GA + +G+
Sbjct: 595 TNSLVRQSACIGVGFITMQCNPELVPNYKRIIEKLNRLIVDKKESGAVELGAVLGRGLSE 654
Query: 700 AGGRNVTIELENTEMGTLNSRSIIGLMMFSQFWYWFPLSHFLSLSFTPTTL 750
GGRN+ + N G ++ I G ++F +WYW PL +SL PTT+
Sbjct: 655 GGGRNIVFSVRNMS-GITSADRIAGAVLFLHYWYWHPLISMVSLCALPTTV 704
>SPBP19A11.03c [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 891
Score = 94.4 bits (233), Expect = 8e-19
Identities = 109/465 (23%), Positives = 182/465 (38%), Gaps = 48/465 (10%)
Query: 328 NAFMHAGTTDDSFIR---QNLQWLGKAQNWAKFTATASLGVIHQGNLSDGRKIMEPYLPG 384
NA ++AG ++D I + W+ K + +ATAS+G++ N+ G +++ YL
Sbjct: 375 NALVNAGYSNDRLILVDDEKTSWIYKNKESGLISATASIGLLQLWNVDMGLSLLDKYLY- 433
Query: 385 NGSKSRYIKGGSLYGLGLIFAGYGKESTD---YLKEQIQANSSSVGEEDVDVLLHGACLG 441
S K G+L G+G+ E+ L E ++ S L A LG
Sbjct: 434 --SSEENTKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVK--------LRASAILG 483
Query: 442 IGLSGMGSDDVNVCEMLKEVLYGD------SAKXXXXXXXXXXXXXXXXXNQTVIQDLLT 495
+GL+ G++ ++ +ML ++ S T++Q L+
Sbjct: 484 LGLAYSGANREDLLDMLSPIVTDTDCPMQLSCLAALSLGLIFVGTCNGDVASTILQTLME 543
Query: 496 YAEETQHGNITRSLSIALALINYGKEELADDLIDKLLASENALLRYGGAYTIALAHAGTG 555
E Q+ R +++ LAL+ GK++LAD ++ L A E + R ++AGTG
Sbjct: 544 REESAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIARQAEILVDICSYAGTG 603
Query: 556 NNKAVKKLLHX-----XXXXXXXXXXXXXXXXLGFVLIREYTTVPRIVELLSKSHNAH-- 608
N ++KLLH LG I + + L H H
Sbjct: 604 NVLHIQKLLHICSEPPSDDAKESETTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYG 663
Query: 609 ---VRCGTAFALGVSCAGRGLQAAVDVLEPLLKDPVDYVRQAAMIATSMILIQQTEKTNS 665
+R ALG+ A D L D V A+ A ++ +N+
Sbjct: 664 EPSIRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLV---GAGTSNA 720
Query: 666 KVKEVNEQFMSVIGNKHQEGLAKFGACIAQGIMNAGGRNVTIELENTEMGTLNSRSIIGL 725
++ ++ Q S H+E A F IAQG++ G +T+ +TE L + GL
Sbjct: 721 RLAQLLRQLASYY---HKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQTAFAGL 777
Query: 726 M-----MFSQFWYWFPLSHFL----SLSFTPTTLVGLRASDLAIP 761
M M + SH+L +L+ P L+ L +P
Sbjct: 778 MTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLP 822
>Hs20149522 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 908
Score = 83.6 bits (205), Expect = 1e-15
Identities = 124/554 (22%), Positives = 229/554 (40%), Gaps = 77/554 (13%)
Query: 45 EIEALYDDVS-FPDRRLAAIVASKVYYNLGEYQLAVKYALAAGEYLNIDEQSQYVETIVS 103
+++ +Y++++ ++R AA + S + + + +KY L + +YV +
Sbjct: 105 KLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAG 164
Query: 104 QSIEMYIEFASSNYESEPVEIDPHLVSIFERMLKKCVSSGEYKLALGIALESYRLDVVEK 163
+ + + E ++E V+ +P L + E + + E++ A + +E ++D++EK
Sbjct: 165 EVAKEWQELD----DAEKVQREPLLTLVKEIVPYNMAHNAEHE-ACDLLMEIEQVDMLEK 219
Query: 164 LLTSQDTSTNAL-KLCSYTLAVCTTALTNT------RFKLSVLKKLYEIVMNMPAPDYFI 216
D NA K+C Y L C + R L V +K +
Sbjct: 220 -----DIDENAYAKVCLY-LTSCVNYVPEPENSALLRCALGVFRKFSRFPEAL------- 266
Query: 217 ISKIIVQLNDIEFAKELFFKLNSTKSYDVSYQIAFDLVNSASQGLLKDLSNSLDANVYDP 276
++ + LND+E +++F S K V Q+AF L G+ +LS D Y+
Sbjct: 267 --RLALMLNDMELVEDIF---TSCKDVVVQKQMAFML---GRHGVFLELSE--DVEEYED 316
Query: 277 KLLEILSGIPTCDLQNTFL--------FENKTIDKALLNKMKSSLDG------KFSLFHT 322
L EI+S + L + FL E K D ++++ G + +
Sbjct: 317 -LTEIMSNV---QLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNL 372
Query: 323 AVSVSNAFMHAGTTDDSFIRQN-LQWLGKAQNWAKFTATASLGVIHQGNLSDGRKIMEPY 381
A S N F++A D + + +WL K ++ +A ASLG+I ++ G ++ Y
Sbjct: 373 ASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKY 432
Query: 382 LPGNGSKSRYIKGGSLYGLGLIFAGYGKE---STDYLKEQIQANSSSVGEEDVDVLLHGA 438
L S YIK G+L G++ +G E + L + + NS++ + G+
Sbjct: 433 LY---SSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNT--------MRLGS 481
Query: 439 CLGIGLSGMGSDDVNVCEMLKEVLYGDSAKXXXXXXXXXXXXXXXXXNQ-------TVIQ 491
G+GL+ GS+ +V +L V+ GDS T++Q
Sbjct: 482 IFGLGLAYAGSNREDVLTLLLPVM-GDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 540
Query: 492 DLLTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLLASENALLRYGGAYTIALAH 551
++ +E R L + L L + GK E + ++ L + A+
Sbjct: 541 TIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAY 600
Query: 552 AGTGNNKAVKKLLH 565
AG+GN V++LLH
Sbjct: 601 AGSGNVLKVQQLLH 614
>At2g20580 [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 893
Score = 81.3 bits (199), Expect = 7e-15
Identities = 138/666 (20%), Positives = 260/666 (38%), Gaps = 72/666 (10%)
Query: 96 QYVETIVSQSIEMYIEFASSNYESEPVEIDPHLVSIFERMLKKCVSSGEYKLALGIALES 155
+YV + + + Y + +SE ID L+ + ++++ + A+ + ++
Sbjct: 153 EYVRNLAGEIAQEY-----TKRQSEEASIDD-LMELVQQIVAFHMKHNAETEAVDLLMDV 206
Query: 156 YRLDVVEKLLTSQDTSTNALKLCSYTLAVCTTALTNTRFKLSVLKKLYEIVMNMPAPDYF 215
LD LL TN + C+Y L L L VL Y I M +Y
Sbjct: 207 EDLD----LLLEHVDKTNFKRTCNY-LTSAARYLPGPDDML-VLDISYMIYMKFE--EYP 258
Query: 216 IISKIIVQLNDIEFAKELFFKLNST-KSYDVSYQIA-----FDL-----VNSASQGLLKD 264
+I + L++ ++ K++F K Y IA F+L + + L+D
Sbjct: 259 NALQIALFLDNTQYVKQVFTSCTDLLKKKQFCYMIARHGITFELDDEMVADDDDREALQD 318
Query: 265 LSNSL---DANVYDPKLLEILSGIPTCDLQNTFLFENKTIDKALLNKMKSSLDGKFSLFH 321
+ N+ + + + +E++ D+ L + + A ++ + +L
Sbjct: 319 IVNNTKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASSGASVDSARQNL-------- 370
Query: 322 TAVSVSNAFMHAG--------TTDDSFIRQNLQWLGKAQNWAKFTATASLGVIHQGNLSD 373
A + NAF++AG DS + WL K + K +A ASLG+I ++
Sbjct: 371 -AATFVNAFVNAGFGQDKLMTVPSDSTTGSSGNWLFKNKEHGKTSAAASLGMIQLWDVDS 429
Query: 374 GRKIMEPYLPGNGSKSRYIKGGSLYGLGLIFAGYGKESTDYLKEQIQANSSSVGEEDVDV 433
G ++ Y N + I G+L G+G++ G + L + +ED V
Sbjct: 430 GLSQLDKYFHSNDNP---IIAGALLGVGIVNCGIKNDCDPALA----LLGDYIDKEDSSV 482
Query: 434 LLHGACLGIGLSGMGS--DDVNVCEMLKEVLYGDSAKXXXXXXXXXXXXXXXXXN----- 486
+ GA +G+G+S GS D V + L +L A +
Sbjct: 483 RI-GAIMGLGISYAGSQNDQVLIRNKLSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEV 541
Query: 487 -QTVIQDLLTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLLASENALLRYGGAY 545
Q++I L+ +E +TR L + L L+ GK+E + + + +Y
Sbjct: 542 AQSIIFALMDRSEAELGDALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 601
Query: 546 TIALAHAGTGNNKAVKKLLHXXXXXXXXXXXXXXXXXLGFVLIREYTTVP-----RIVEL 600
++ A+AGTGN V+ LL LG ++ + R +E
Sbjct: 602 LLSCAYAGTGNVLKVQDLLAQCGEHLEKGDIHQGPAVLGLAMVAMSEELGVDMEIRSLER 661
Query: 601 LSKSHNAHVRCGTAFALGVSCAGRGLQAAVDVLEPLLKDPVDYVRQAAMIATSMILIQQT 660
+ + ++R ALG+ C +D L L D V +A+I+ +I
Sbjct: 662 MLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIISLGLI---GA 718
Query: 661 EKTNSKVKEVNEQFMSVIGNKHQEGLAKFGACIAQGIMNAGGRNVTIELENTEMGTLNSR 720
N+++ + S +++ F IAQG+++ G +T+ ++E L+
Sbjct: 719 GTNNARIAGMLRNLSSYY---YKDMSLLFCVRIAQGLVHMGKGLLTLSPFHSERFLLSPT 775
Query: 721 SIIGLM 726
++ G++
Sbjct: 776 ALAGIV 781
>YHR027c [O] KOG2005 26S proteasome regulatory complex subunit RPN1/PSMD2
Length = 993
Score = 62.0 bits (149), Expect = 4e-09
Identities = 64/272 (23%), Positives = 115/272 (41%), Gaps = 24/272 (8%)
Query: 310 KSSLDGKFSLFHTA----------VSVSNAFMHAGTTDDSFIRQNLQWLGKAQNWAKFTA 359
KS LD S+F +A S N F++ G +D I N W+ K + +A
Sbjct: 359 KSHLDNSKSVFSSAGLDSAQQNLASSFVNGFLNLGYCNDKLIVDNDNWVYKTKGDGMTSA 418
Query: 360 TASLGVIHQGNLSDGRKIMEPYLPGNGSKSRYIKGGSLYGLGLIFAGYGKESTDYLKEQI 419
AS+G I+Q NL DG + ++ YL + + +K G+L G+G+ +G + +
Sbjct: 419 VASIGSIYQWNL-DGLQQLDKYLYVDEPE---VKAGALLGIGISASGVHDGEVEPALLLL 474
Query: 420 QANSSSVGEEDVDVLLHGACLGIGLSGMGSDDVNVCEMLKEVLYG------DSAKXXXXX 473
Q V D + A LG+G++ GS + V +L + +A
Sbjct: 475 Q---DYVTNPDTKI-SSAAILGLGIAFAGSKNDEVLGLLLPIAASTDLPIETAAMASLAL 530
Query: 474 XXXXXXXXXXXXNQTVIQDLLTYAEETQHGNITRSLSIALALINYGKEELADDLIDKLLA 533
+++ + L + R L++AL ++ G+ E DD+++ + A
Sbjct: 531 AHVFVGTCNGDITTSIMDNFLERTAIELKTDWVRFLALALGILYMGQGEQVDDVLETISA 590
Query: 534 SENALLRYGGAYTIALAHAGTGNNKAVKKLLH 565
E+ + + A+ GTG+ ++ LLH
Sbjct: 591 IEHPMTSAIEVLVGSCAYTGTGDVLLIQDLLH 622
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,952,001
Number of Sequences: 60738
Number of extensions: 1874377
Number of successful extensions: 5191
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5085
Number of HSP's gapped (non-prelim): 27
length of query: 933
length of database: 30,389,216
effective HSP length: 116
effective length of query: 817
effective length of database: 23,343,608
effective search space: 19071727736
effective search space used: 19071727736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)