ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2368 good J KOG1462 Translation, ribosomal structure and biogenesis Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2368 832621 831140 -494
(494 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR260w [J] KOG1462 Translation initiation factor 2B gamma subun... 466 e-131
SPAC4D7.09 [J] KOG1462 Translation initiation factor 2B gamma su... 145 1e-34
Hs9966779 [J] KOG1462 Translation initiation factor 2B gamma sub... 108 2e-23
7303057 [J] KOG1462 Translation initiation factor 2B gamma subun... 76 1e-13
YDR211w [J] KOG1461 Translation initiation factor 2B epsilon sub... 61 4e-09
CE23548 [J] KOG1462 Translation initiation factor 2B gamma subun... 60 7e-09
SPAC8C9.15c [J] KOG1461 Translation initiation factor 2B epsilon... 59 1e-08
ECU05g1360 [J] KOG1462 Translation initiation factor 2B gamma su... 55 3e-07
>YOR260w [J] KOG1462 Translation initiation factor 2B gamma subunit
(eIF-2Bgamma/GCD1)
Length = 578
Score = 466 bits (1200), Expect = e-131
Identities = 252/525 (48%), Positives = 323/525 (61%), Gaps = 71/525 (13%)
Query: 1 MDFQAFIFCGRGAKLTPFSN-------------------------------------VRG 23
M QAF+FCG+G+ L PF+ ++
Sbjct: 1 MSIQAFVFCGKGSNLAPFTQPDFPFQTQNKDSTAATSGDKLNELVNSALDSTVINEFMQH 60
Query: 24 DTGVPKALLPVANRSMIEFVLDWCEQAQFKEVNLVIDASDADELEESLKKYREVRGHYFG 83
T +PKALLP+ NR MIE+VLDWC+QA FKE+++V + + +E L + +R F
Sbjct: 61 STRLPKALLPIGNRPMIEYVLDWCDQADFKEISVVAPVDEIELIESGLTSFLSLRKQQFE 120
Query: 84 LLSQSVG-SNHAHYLKKPSPINIIPSKCENTGECLKNELLDKITGDFVLLPCDFITDIPP 142
L+ +++ SNH+H+L+ P IN IPSK +TGE L+ ELL +I GDFV+LPCDF+TDIPP
Sbjct: 121 LIYKALSNSNHSHHLQDPKKINFIPSKANSTGESLQKELLPRINGDFVILPCDFVTDIPP 180
Query: 143 QVFLDQYLNKDPENLAMAVYYHNGFEN-IDKKHLK-----QFLTVYSENLESVSKPVLLD 196
QV +DQ+ N+D NLAM +YY N ++ IDKK + QF TVYSEN +S +P+LLD
Sbjct: 181 QVLVDQFRNRDDNNLAMTIYYKNSLDSSIDKKQQQKQKQQQFFTVYSENEDSERQPILLD 240
Query: 197 VYSKDDVDKTKYLQIRSQMLWRYPNSSVSTKLLNSFIYFCSHELVNLLK----------- 245
VYS+ DV KTKYLQIRS +LW YPN +VSTKLLNSFIYFCS EL LLK
Sbjct: 241 VYSQRDVTKTKYLQIRSHLLWNYPNLTVSTKLLNSFIYFCSFELCQLLKLGPQSMSRQAS 300
Query: 246 --------------DETEKGAGELDSDSEAVDSLATSFQNTSFLKGKKKLIKDPINCNKS 291
T+ D + ATS Q T F K K LI DPINCNKS
Sbjct: 301 FKDPFTGNQQQQNPPTTDDDEDRNHDDDDDYKPSATSIQPTYFKK-KNDLILDPINCNKS 359
Query: 292 LGKLFRDLSRRSWQHVKPRETIGIFVLPEIGLFIRSNSLSAYMESNRYVLKIK-QTAIQQ 350
L K+FRDLSRRSWQH KPRE IGIF+LP LFIR+N+L+AYM++NR+VLKIK QT +
Sbjct: 360 LSKVFRDLSRRSWQHSKPREPIGIFILPNETLFIRANNLNAYMDANRFVLKIKSQTMFTK 419
Query: 351 RTTDGSSAIGADSMVGNNCAILEKTNIKRSVLGDNCKVGKRCRIVGCVVLDNVEIDDETQ 410
S+AIGAD++V C I +N+K SVLG +G RCR+ G ++ V + DE
Sbjct: 420 NIQIQSAAIGADAIVDPKCQISAHSNVKMSVLGTQANIGSRCRVAGSLLFPGVHLGDEVI 479
Query: 411 LENVIIGRNAKIGKKSKLTNCYVEGSYIVNEKSTLKGETLTSIYI 455
LEN IIG AKIG K KL+NCY+EG Y+V K+ KGETL ++Y+
Sbjct: 480 LENCIIGPMAKIGSKCKLSNCYIEGHYVVEPKNNFKGETLANVYL 524
>SPAC4D7.09 [J] KOG1462 Translation initiation factor 2B gamma subunit
(eIF-2Bgamma/GCD1)
Length = 468
Score = 145 bits (366), Expect = 1e-34
Identities = 115/462 (24%), Positives = 208/462 (44%), Gaps = 47/462 (10%)
Query: 1 MDFQAFIFCGRGAKLTPFSNVRGDTGVPKALLPVANRSMIEFVLDWCEQAQFKEVNLVID 60
++FQA +F G G L P + G +PKALLP+ N+ M+ + L W E A F L+
Sbjct: 37 IEFQAVVFAGFGNSLYPLT---GSDALPKALLPIGNKPMLHYPLYWLEAAGFTSAILIC- 92
Query: 61 ASDADELEESLKKYREVRGHYFGLLSQSVGSNHAHYLKKPSPINIIPSKCEN---TGECL 117
E H L + +++ P+ ++ S + +
Sbjct: 93 -------------MEEAEAHINAWLRSGYEGHMRIHVEAPTILDDSKSSADALRAVSHLI 139
Query: 118 KNE--LLDKITGDFVLLPCDFITDIPPQVFLDQYLNKDPENLAMAVYYHNGFENIDKKHL 175
K++ L D DFV L CD I +PP LD++ +P A+AVY + +H+
Sbjct: 140 KSQKMLTDTHQNDFVCLSCDSIVGLPPIYGLDKFRLDNPS--ALAVYS----PVLKYEHI 193
Query: 176 -KQFLTVYSENLESVSKPVLLDVYSKDDVDKTKYLQIRSQMLWRYPNSSVSTKLLNSFIY 234
Q + ++ L + + +Y+K D R +LW++P +++T L ++ I+
Sbjct: 194 TSQSKEIDAKQLIGIEEKTSRLLYAKSSADVGSDFTFRMSLLWKHPRVTLNTNLSDAHIF 253
Query: 235 FCSHELVNLLKDETEKGAGELDSDSEAVDSLATSFQNTSFL--KGKKKLIKDPINCNKSL 292
H +++L++++ + D + L SF + ++ + P N +
Sbjct: 254 VFKHWVIDLIREKESISSIRGD----LIPYLVKCQYQKSFTVRENIQRFLSSPNNIDNYD 309
Query: 293 GKLFRDLSRRSWQHVKPRETIGIFVLPEIGLFIRSNSLSAYMESNRYVLKIK-QTAIQQR 351
G L S Q +K I + + + R+N+L Y E N+ + K+ + +
Sbjct: 310 GGL-------SSQEIK----INALIAKDGIICSRANNLPNYFELNKCIAKLTPEQRLVDV 358
Query: 352 TTDGSSAIGADSMVGNNCAILEKTNIKRSVLGDNCKVGKRCRIVGCVVLDNVEIDDETQL 411
T + +GAD MV I + +NIK+S++G NC +GK + +++DN+ ++D +L
Sbjct: 359 TVSERALVGADCMVNEGTTIKDNSNIKKSIIGKNCVIGKGVVVSNSILMDNIVVEDGVRL 418
Query: 412 ENVIIGRNAKIGKKSKLTNCYVEGSYIVNEKSTLKGETLTSI 453
E+ I+ A+IG KSKL C + + V +GE L +
Sbjct: 419 ESCIVASGAQIGAKSKLRECEIGVDHRVEAGRIARGERLVDM 460
>Hs9966779 [J] KOG1462 Translation initiation factor 2B gamma subunit
(eIF-2Bgamma/GCD1)
Length = 452
Score = 108 bits (270), Expect = 2e-23
Identities = 115/495 (23%), Positives = 211/495 (42%), Gaps = 97/495 (19%)
Query: 1 MDFQAFIFC-GRGAKLTPFSNVRGDTGVPKALLPVANRSMIEFVLDWCEQAQFKEVNLVI 59
M+FQA + G G+++T ++ +PK LLPV N+ +I + L+ E+ F+EV +V
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTS-----SIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVT 55
Query: 60 DASDADELEESLKKYREVRGHYFGLLSQSVGSNHAHYLKKPSPINIIPSKCE-NTGECLK 118
L K +K I IP + T + L+
Sbjct: 56 TRDVQKALCAEFK------------------------MKMKPDIVCIPDDADMGTADSLR 91
Query: 119 NELLDKITGDFVLLPCDFITDIPPQVFLDQYLNKDPENLAMAVYYHNGFENID------- 171
+ K+ D ++L CD ITD+ +D + D ++A+ G ++I+
Sbjct: 92 Y-IYPKLKTDVLVLSCDLITDVALHEVVDLFRAYDA---SLAMLMRKGQDSIEPVPGQKG 147
Query: 172 -KKHLKQFLTVYSENLESVSKPVLLDVYSKDDVDKTKYLQIRSQMLWRYPNSSVSTKLLN 230
KK ++Q + ++S K +L + ++ D + L I+ +L ++P T L++
Sbjct: 148 KKKAVEQRDFI---GVDSTGKRLL---FMANEADLDEELVIKGSILQKHPRIRFHTGLVD 201
Query: 231 SFIYFCSHELVNLLKDE-----------------------TEKGAGELDSDSEAVDSLAT 267
+ +Y +V+ L + +++G E + D + +
Sbjct: 202 AHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSASSQQGQEEKEEDLKKKE--LK 259
Query: 268 SFQNTSFLKGKKKLIKDPINC--NKSLGKLFRDLSR---RSWQHVKPRETIGIFVLPEIG 322
S SF+K L P + N G + DLSR R + H+ G
Sbjct: 260 SLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRCYVHIMKE-----------G 308
Query: 323 LFIRSNSLSAYMESNRYVLKIKQTAIQQRTTDGSSA-------IGADSMVGNNCAILEKT 375
L R ++L YME+NR V K+ + SSA +G DS++G I EK+
Sbjct: 309 LCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGPETQIGEKS 368
Query: 376 NIKRSVLGDNCKVGKRCRIVGCVVLDNVEIDDETQLENVIIGRNAKIGKKSKLTNCYVEG 435
+IKRSV+G +C + R I C+++++V +++ + ++ +I NA I K + + +C +
Sbjct: 369 SIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGS 428
Query: 436 SYIVNEKSTLKGETL 450
+ K+ E +
Sbjct: 429 GQRIEAKAKRVNEVI 443
>7303057 [J] KOG1462 Translation initiation factor 2B gamma subunit
(eIF-2Bgamma/GCD1)
Length = 455
Score = 76.3 bits (186), Expect = 1e-13
Identities = 105/479 (21%), Positives = 195/479 (39%), Gaps = 86/479 (17%)
Query: 2 DFQAFIFC-GRGAKLTPFSNVRGDTGVPKALLPVANRSMIEFVLDWCEQAQFKEVNLVID 60
+FQA +F GRG +L V GD PK LLPV +I + L+ +Q F EV +V+
Sbjct: 3 EFQAVVFAAGRGTRLP---EVLGDA--PKCLLPVGPYPLIWYPLNLLQQHNFTEVIVVVL 57
Query: 61 ASDADELEESLKKYREVRGHYFGLLSQSVGSNHAHYLKKPSPINIIPSKCE-NTGECLKN 119
+ E++ +L+ LK IPS + T + L+
Sbjct: 58 EQEKLEIQSALENTP---------------------LKLRLDYATIPSDGDFGTADSLRY 96
Query: 120 ELLDKITGDFVLLPCDFITDIPPQVFLDQYLNKDPENLAMAVYYHNGFENI------DKK 173
+ DKI DF+++ CD ++++ ++++ D LAM ++ +GFE+ K
Sbjct: 97 -IYDKIKSDFLVVSCDLVSNVSLYPLINKFREHDAA-LAMLLF-PSGFESDVVMPGPKSK 153
Query: 174 HL--KQFLTVYSENLESVSKPVLLDVYSKDDVDKTKYLQIRSQMLWRYPNSSVSTKLLNS 231
H + + +++ L V + D ++T L I+ +L V ++L+++
Sbjct: 154 HKPERDLIGIHAATQR------LAFVSAASDCEET--LNIQRHLLKNRGRLDVYSRLVDA 205
Query: 232 FIY------------------FCSHELVNLLKDETEKGAGELDSDSEAVDSLATSFQNTS 273
+Y F L +L+K + K + D+ + + T ++
Sbjct: 206 HVYVLKKWVIDYLRRKENISTFKGEFLPHLIKKQHSKRPPKTVQDTTSEVGVVTKNEDHV 265
Query: 274 FLKGKKKLIKDPINCNKSLGKLFRDLSRRSWQHVKPRETIGIFVLPEIGLFIRSNSLSAY 333
++ I LF +S H GI P + +R N+ ++
Sbjct: 266 LHYVGHTILDQKITQTS----LFNQSLSQSPYHGDIVRCYGIQA-PRDAIGVRVNNTLSF 320
Query: 334 MESNRYVLKIKQTAIQQR-----------TTDGSSAIGADSMVGNNCAILEKTNIKRSVL 382
+ NR + I ++ +T I AD N + EKT++ SV
Sbjct: 321 LAINRKLASIWNNLCGEKHPLISPGAVVKSTQTKEIIAAD-----NAKLSEKTSLNFSVF 375
Query: 383 GDNCKVGKRCRIVGCVVLDNVEIDDETQLENVIIGRNAKIGKKSKLTNCYVEGSYIVNE 441
G NC + + + +++ N +++ ++N IIG A++ S L NC + +Y+V E
Sbjct: 376 GPNCIISPKNIVANSLIMSNAIVEEGCNIDNCIIGHRAQVKSGSVLKNCIIGPNYVVEE 434
>YDR211w [J] KOG1461 Translation initiation factor 2B epsilon subunit
(eIF-2Bepsilon/GCD6)
Length = 712
Score = 60.8 bits (146), Expect = 4e-09
Identities = 100/451 (22%), Positives = 185/451 (40%), Gaps = 91/451 (20%)
Query: 28 PKALLPVANRSMIEFVLDWCEQAQFKEVNLVIDASDADELEESLKKYREVRGHYFGLLSQ 87
P+ LLP+AN +IE+ L++ +A EV L+ +S A+++ + ++
Sbjct: 48 PRCLLPLANVPLIEYTLEFLAKAGVHEVFLIC-SSHANQINDYIE--------------- 91
Query: 88 SVGSNHAHYLKKPSPINIIPS-KCENTGECLKNELLDK---ITGDFVLLPCDFITDIPPQ 143
++ + P I I S + TG+ +++ LD ITGDF+L+ D +T+I
Sbjct: 92 ---NSKWNLPWSPFKITTIMSPEARCTGDVMRD--LDNRGIITGDFILVSGDVLTNIDFS 146
Query: 144 VFLDQYLNKDPENLAMAVYYHNGFENIDKKHLKQFL----TVYSENLESVSKPVLLD--- 196
L+ +H DK H+ + Y + +LD
Sbjct: 147 KMLE---------------FHKKMHLQDKDHISTMCLSKASTYPKTRTIEPAAFVLDKST 191
Query: 197 ---VYSKD-----DVDKTKYLQIRSQMLWRYPNSSVSTKLLNSFIYFCSHELVNLLKDET 248
+Y +D +KT +QI ++L + L++ I C+ + + ++
Sbjct: 192 SRCIYYQDLPLPSSREKTS-IQIDPELLDNVDEFVIRNDLIDCRIDICTSHVPLIFQENF 250
Query: 249 EKGAGELDSDSEAVDSLATSFQNTSFLKGKKKLIKDPINCNKSLGKLFRDLSRR--SWQH 306
+ SL T F+KG +I I L + + R SWQ
Sbjct: 251 D------------YQSL-----RTDFVKG---VISSDILGKHIYAYLTDEYAVRVESWQT 290
Query: 307 VKP--RETIGIFVLPEIGLFIRSNSLS--AYMESNRYVLKIKQTAIQQRTTDGSSAIGAD 362
++ +G + P L + SN Y +R++ K K + Q S IG
Sbjct: 291 YDTISQDFLGRWCYP---LVLDSNIQDDQTYSYESRHIYKEKDVVLAQ-----SCKIGKC 342
Query: 363 SMVGNNCAILEKTNIKRSVLGDNCKVGKRCRIVGCVVLDNVEIDDETQLENVIIGRNAKI 422
+ +G+ I E T I+ SV+G NC++G+ RI + D+ I + + +++ +I NA +
Sbjct: 343 TAIGSGTKIGEGTKIENSVIGRNCQIGENIRIKNSFIWDDCIIGNNSIIDHSLIASNATL 402
Query: 423 GKKSKLTN-CYVEGSYIVNEKSTLKGETLTS 452
G +L + C + + +++ L T S
Sbjct: 403 GSNVRLNDGCIIGFNVKIDDNMDLDRNTKIS 433
>CE23548 [J] KOG1462 Translation initiation factor 2B gamma subunit
(eIF-2Bgamma/GCD1)
Length = 404
Score = 60.1 bits (144), Expect = 7e-09
Identities = 97/462 (20%), Positives = 169/462 (35%), Gaps = 84/462 (18%)
Query: 2 DFQAFIFCGRGAKLTPFSNVRGDTGVPKALLPVANRSMIEFVLDWCEQAQFKEVNLVIDA 61
+ Q + C G P V K LLPV M + L + ++ + +
Sbjct: 3 EMQGILLCSGGGTRMPVLTRH----VQKCLLPVVGVPMFLYPLSSLLRTGITDIKIFVRE 58
Query: 62 SDADELEESLKKYREVRGHYFGLLSQSVGSNHAHYLKKPSPINIIPSKCEN--TGECLKN 119
LE+ +KK + + K P+ I I E+ T + LKN
Sbjct: 59 VLQLTLEKEVKKSKLLE-------------------KYPAHIEYICVNQEDFGTADLLKN 99
Query: 120 ELLDKITGDFVLLPCDFITDIPPQVFLDQYLNKDPENLAMAVYYHNGFENIDKKHLKQFL 179
KIT D +++ CDFI+D +D + + +A+ K K
Sbjct: 100 HH-SKITKDALIVSCDFISDASLIPLVDFFRATNSTLVALIADTCVNAPAPGSKSKKPKA 158
Query: 180 TVYSENLESVSKPVLLDVYSKDDVDKTKYLQIRSQMLWRYPNSSVSTKLLNSFIYFCSHE 239
T +ES + L DD D ++ + L +P+ +++K + +Y H+
Sbjct: 159 TDVMAIVESTGQLAFL--CGDDDFDAPLVME---KSLKIFPSIKLTSKYNDCHVYAIRHK 213
Query: 240 -LVNLLKDETEKGAGELDSDSEAVDSLATSFQNTSFLKGKKKLIKDPINCNKSLGKLFRD 298
L+NL K S+ + S F P+ +K
Sbjct: 214 VLLNLSK-------------SKHISSFKADFV--------------PLLIDKQF------ 240
Query: 299 LSRRSWQHVKPRETIGIFV--LPEIGLFI--RSNSLSAYMESNRYVLKIKQTAIQQRTTD 354
+P I F LP F+ +N+L +Y E N+ + K ++ R
Sbjct: 241 ---------EPDSDIKCFAYRLPHENGFVTAHANTLGSYFEVNKAIQKSFTRLMEYRGNG 291
Query: 355 GSSAIGADSMVGNNCAILEKTNI------KRSVLGDNCKVGKRCRIVGCVVLDNVEIDDE 408
+ D + + I E I KRS + DNC++G++ ++ ++ V I +
Sbjct: 292 KNFNYKTDKIAAHESRIEESAEIDKDSVIKRSFISDNCRIGEKTKLKESIIAKGVVIGNG 351
Query: 409 TQLENVIIGRNAKIGKKSKLTNCYVEGSYIVNEKSTLKGETL 450
+ N II +IG+ + +TNC V V K ++ E +
Sbjct: 352 ASISNSIICDGVEIGENADVTNCIVAKDQKVPAKGKVQNEVV 393
>SPAC8C9.15c [J] KOG1461 Translation initiation factor 2B epsilon subunit
(eIF-2Bepsilon/GCD6)
Length = 678
Score = 59.3 bits (142), Expect = 1e-08
Identities = 86/418 (20%), Positives = 171/418 (40%), Gaps = 60/418 (14%)
Query: 28 PKALLPVANRSMIEFVLDWCEQAQFKEVNLVIDASDADELEESLKKYREVRGHYFGLLSQ 87
P+ LLP+AN +IE+ ++ A +EV V + A ++ E ++K + + L S
Sbjct: 39 PRCLLPLANTPLIEYTFEFLALAGVQEV-YVFCCAHAGQIREYIEKSK------WNLPSS 91
Query: 88 SVGSNHAHYLKKPSPINIIPSKCENTGECLKNELLDK--ITGDFVLLPCDFITDIPPQVF 145
N I+ + + G+ L+ EL K IT DF+L+ D ++++P
Sbjct: 92 PFSVN-----------TIVSRESLSVGDALR-ELDSKQLITSDFILVSGDVVSNVPLNEV 139
Query: 146 LDQYLNK--DPEN--LAMAVYYHNGFENIDKKHLKQFLTVYSENLESVSKPVLLDVYSKD 201
L ++ + D +N + M V + F + + + + V Y +
Sbjct: 140 LKEHRKRREDDKNAIMTMVVREASPFHRTRARTESSVFVIDKKTSQCVH-------YQAN 192
Query: 202 DVDKTKYLQIRSQMLWRYPNSSVSTKLLNSFIYFCSHELVNLLKDETEKGAGELDSDSEA 261
+ K Y+ + ++ + V L++ I CS+++ L + + D +
Sbjct: 193 ERGK-HYVSMDPEIFNEHEELEVRNDLIDCQIDICSNDVPALFTENFDYQ----DIRKDF 247
Query: 262 VDSLATSFQNTSFLKGKKKLIKDPINCNKSLGKLFRDLSRRSWQHVKPRETIGIFVLPEI 321
V + TS L GKK I+C+ + + ++ + +V P +
Sbjct: 248 VYGVLTSD-----LLGKK------IHCHVAKENYAARVRSLQTYDAISKDVLSRWVYPFV 296
Query: 322 GLFIRSNSLSAYMESNRYVLKIKQTAIQQRTTDGSSAIGADSMVGNNCAILEKTNIKRSV 381
SN L+ R+ + ++ + R S I A +++G + + + + ++
Sbjct: 297 P---DSNLLNQTFSYQRHQIYKEEDVVLAR----SCIIKARTLIGAYTKVGDASVVANTI 349
Query: 382 LGDNCKVGKRCRIVGCVVLDNVEIDDETQLENVIIGRNAKIGKKSKLTNCYVEGSYIV 439
+G NC +G C I + ++V I D ++ I+ + KIG NC +E IV
Sbjct: 350 IGRNCTIGSNCSIDSAFLWEDVVIGDNCRIGKAILANSVKIG-----NNCSIEDGAIV 402
>ECU05g1360 [J] KOG1462 Translation initiation factor 2B gamma subunit
(eIF-2Bgamma/GCD1)
Length = 372
Score = 54.7 bits (130), Expect = 3e-07
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 343 IKQTAIQQRTTDGSSAIGADSMVGNNCAILEKTNIKRSVLGDNCKVGKRCRIVGCVVLDN 402
IK + D S+ +G ++ GN + S++G C +G+ +I+ +V+DN
Sbjct: 270 IKDYVKKYNLKDLSNVVGDNTRTGNVLLL-------DSIIGSGCDIGEESKIISSIVMDN 322
Query: 403 VEIDDETQLENVIIGRNAKIGKKSKLTNCYVEGSYIVNE 441
V I + +E I+G A I S L NC V Y+ NE
Sbjct: 323 VSIGHGSHIEGSIVGMGATILDGSTLINCKVSPGYVFNE 361
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,505,152
Number of Sequences: 60738
Number of extensions: 1213365
Number of successful extensions: 3433
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3375
Number of HSP's gapped (non-prelim): 20
length of query: 494
length of database: 30,389,216
effective HSP length: 110
effective length of query: 384
effective length of database: 23,708,036
effective search space: 9103885824
effective search space used: 9103885824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)