ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2419 good A KOG3763 RNA processing and modification mRNA export factor TAP/MEX67
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2419 848068 846305 -588
(588 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL169c [A] KOG3763 mRNA export factor TAP/MEX67 681 0.0
SPBC1921.03c [A] KOG3763 mRNA export factor TAP/MEX67 230 4e-60
Hs13430854 [A] KOG3763 mRNA export factor TAP/MEX67 90 1e-17
Hs15487670 [A] KOG3763 mRNA export factor TAP/MEX67 86 1e-16
7292559 [A] KOG3763 mRNA export factor TAP/MEX67 67 6e-11
Hs15487668 [A] KOG3763 mRNA export factor TAP/MEX67 58 5e-08
Hs15487666 [A] KOG3763 mRNA export factor TAP/MEX67 58 5e-08
Hs15487662 [A] KOG3763 mRNA export factor TAP/MEX67 58 5e-08
Hs15487660 [A] KOG3763 mRNA export factor TAP/MEX67 58 5e-08
CE08180 [A] KOG3763 mRNA export factor TAP/MEX67 56 1e-07
7298820 [A] KOG3763 mRNA export factor TAP/MEX67 53 1e-06
>YPL169c [A] KOG3763 mRNA export factor TAP/MEX67
Length = 599
Score = 681 bits (1757), Expect = 0.0
Identities = 340/599 (56%), Positives = 451/599 (74%), Gaps = 15/599 (2%)
Query: 3 VSGFGNVNQIGALAQQNQLDNLVSVSIRGWTNATQQDLLNFISRKTRISVRNSVVQGDTI 62
+SGF NV I +AQQ N + +S+R W NAT DL+NFISR R++V ++ V+G +
Sbjct: 1 MSGFHNVGNINMMAQQQMQQNRIKISVRNWQNATMNDLINFISRNARVAVYDAHVEGPLV 60
Query: 63 VGYVTPQ-EADQLVKFSGYRFAGNSLKIHKAAGGNTNPNTNDTITVLRNVLLRRYNVQTR 121
+GYV + EA+ L+K++G RFAG++LK + T+DTI+ LR VLL+RY+ QT+
Sbjct: 61 IGYVNSKAEAESLMKWNGVRFAGSNLKFELLDNNGASAGTSDTISFLRGVLLKRYDPQTK 120
Query: 122 MLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKEPSMVVESINLSDNNLRDVNG 181
+L+LG L +DPEL+Q+G+ +++TQSKMFPAMMK+AS E S++VES+NL+DN L+D++
Sbjct: 121 LLNLGALHSDPELIQKGVF-SSISTQSKMFPAMMKLASTEKSLIVESVNLADNQLKDISA 179
Query: 182 VTTLAQTFPHLKNLCIANNSISRFHSLEVWKNKFKELRELLMMNNPITSDRLYRTEMLRI 241
++TLAQTFP+LKNLC+ANN I RF SLEVWKNKFK+LRELLM NNPIT+D+LYRTEMLR+
Sbjct: 180 ISTLAQTFPNLKNLCLANNQIFRFRSLEVWKNKFKDLRELLMTNNPITTDKLYRTEMLRL 239
Query: 242 FPKLVILDNVVVRDEQKLLSIYSLPVQQTQFFFEDNGLASSSTDFITNFLNLWDSNRMQL 301
FPKLV+LDNV+VRDEQKL ++YSLP++ QFFFE++ L SSTDF TNFLNLWD+NR QL
Sbjct: 240 FPKLVVLDNVIVRDEQKLQTVYSLPMKIQQFFFENDALGQSSTDFATNFLNLWDNNREQL 299
Query: 302 MGLYTPQSQFSLSVDSSVPAATVPNAQTTPTFGHYLPFSRNISKISSDKTIQERLRIGPE 361
+ LY+PQSQFS+SVDS++P +TV ++ TP FG+Y+ SRNISK+SS+K+IQ+RL IG E
Sbjct: 300 LNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLSIGQE 359
Query: 362 AIYEVFGSLPMTKHFLQEQPDAYSVQAWTFPQVQGFVITLHGHFDETAKPEIDKSKTSQG 421
+I +F +LP TKH LQEQP+ YS++ ++PQ+ GFVITLHG F+ET KPE++ +K +
Sbjct: 360 SINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGK 419
Query: 422 SSASRGRRYNHGFTSTPNIKLSQKSFDRTMVLVPSPNGSVIIASDSLTIRPFCDSAWSKP 481
++ + RRYNHG+ ST N KLS+KSFDRT V+VP N SVIIASD LT+R + AW
Sbjct: 420 NNYQKNRRYNHGYNSTSNNKLSKKSFDRTWVIVPM-NNSVIIASDLLTVRAYSTGAWKTA 478
Query: 482 ----PSPPHLQAQSVQHQPQMNVPLSQTP-------PNTSSIPGQIPGVLGSTP-LQFSP 529
PP QA + MN ++ P P SIPG G + P LQ P
Sbjct: 479 SIAIAQPPQQQASVLPQVASMNPNITTPPQPQPSVVPGGMSIPGAPQGAMVMAPTLQLPP 538
Query: 530 EVQAKLSPVQLELLQKLHLETKLNAEYTYMLAEQSLWNYDNAIQGFRNSANNLPREAFI 588
+VQ++L+PVQLELL KLHLETKLNAEYT+MLAEQS WNY+ AI+GF++S N +PREAF+
Sbjct: 539 DVQSRLNPVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSSMNGIPREAFV 597
>SPBC1921.03c [A] KOG3763 mRNA export factor TAP/MEX67
Length = 596
Score = 230 bits (587), Expect = 4e-60
Identities = 194/614 (31%), Positives = 281/614 (45%), Gaps = 109/614 (17%)
Query: 25 VSVSIRGWTNATQQDLLNFISRKTRISVRNSVVQGDTIVGYVTPQEADQLVKFSGYRFAG 84
+SV I G + ++ DL++F+ RK ++ + N ++ V Q+ +L +G FAG
Sbjct: 40 ISVVITGHSKGSEDDLISFVWRKVKVRLMNISYSPASVTAVVKSQDFSRLNGLNGAAFAG 99
Query: 85 NSLKIHKAAGGN------------------------------------TNP-NTNDTITV 107
+ L I + G + T P +TN+TI
Sbjct: 100 DHLAIRRVDGASNVTQDYRKAKTKRSFRSVSAPSLSALATQAQRNVSKTLPQSTNETIEK 159
Query: 108 LRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKEPSMVVE 167
LR L RY T+ LDLGNL DP L Q G+ + +T+SKMFPA+MKVAS V+
Sbjct: 160 LRQFLQTRYQPATKFLDLGNLQQDPLLKQMGILAE-ASTKSKMFPALMKVASLNFPDVI- 217
Query: 168 SINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSISRFHSLEVW--KNKFKELRELLMMN 225
S++LSDNNL+ V VTTLAQT+P L NL +ANN I+ L+ W K K EL+EL+++
Sbjct: 218 SVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVG 277
Query: 226 NPITSDRL-----YRTEMLRIFPKLVILDNVVVRDEQKLLSIYSLPVQQTQFFFEDNGLA 280
NPI + Y+ EM+ FPKL +LD + E + S ++P Q FF+
Sbjct: 278 NPIVTTFANRAMDYQREMVSRFPKLRLLDGNSINSE-IIASQSTVPFPVYQSFFDKVETE 336
Query: 281 SSSTDFITNFLNLWDSNRMQLMG-LYTPQSQFSLSVDSSVPAATVPNAQTTPTFGHYLPF 339
F+ F WD NR L+ LY+P + FS+S+++S T +G Y
Sbjct: 337 QIVNSFLAAFFKGWDENRSALVNQLYSPNATFSISLNASNVRTNFSQKTDTKKWGAYKMK 396
Query: 340 SRNISKISSDKTIQERLRIGPEAIYEVFGSLPMTKHFLQEQPDAYSVQAW--TFPQVQGF 397
SRN+ S K + RL G E I SLP T H L ++ + W P V
Sbjct: 397 SRNLLYSQSQKESKSRLFNGHEEISNAVKSLPATAHDLSDR-SQWVFDGWNLVLPSVGAA 455
Query: 398 V-ITLHGHFDETAKPEIDKSKTSQGSSASRGRRYNHGFTSTPNIKLSQKSFDRTMVLVPS 456
+ I +HG F+E P K +SFDRT++++P
Sbjct: 456 IKIVVHGQFEE------------------------------PQNKRLLRSFDRTLLILPG 485
Query: 457 PNGSVIIASDSLTIRPFCDS-AWSKPPSPPHLQAQSVQHQPQMNVPLSQTPPNTSSIPGQ 515
+ ++I +D L IR F S W L QS + S + P
Sbjct: 486 GSTGILIINDLLVIRSFAGSLGW--------LPGQSSVRTSNNAMSASASKP-------- 529
Query: 516 IPGVLGSTPLQFSPEVQAKLSPVQLELLQKLHLETKLNAEYTYMLAEQSLWNYDNAIQGF 575
S +Q PE QA L Q +++ K+ ET LN Y +M EQ+ W+Y++A+ F
Sbjct: 530 ------SDIVQPRPE-QAMLDTRQ-QIVLKIKAETGLNDYYAHMCCEQNNWDYNSALASF 581
Query: 576 --RNSANNLPREAF 587
S N +P EAF
Sbjct: 582 LELKSRNVIPAEAF 595
>Hs13430854 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 626
Score = 89.7 bits (221), Expect = 1e-17
Identities = 111/493 (22%), Positives = 196/493 (39%), Gaps = 98/493 (19%)
Query: 107 VLRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKEPSMVV 166
+L+ + +RYNV + LDL NL DP+L+ R + +N ++ M + + P ++
Sbjct: 216 MLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDI-DIILNRRNCMAATLKIIERNFPELL- 273
Query: 167 ESINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSISRFHSLEVWKNKFKELRELLMMNN 226
S+NL +N L ++G++ + + P +K L ++ N + + E+ K K +L EL + N
Sbjct: 274 -SLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE--SAWELGKVKGLKLEELWLEGN 330
Query: 227 PITS----DRLYRTEMLRIFPKLVILDNVVVRDEQKLLSIYSLPVQQTQFFFEDNGLASS 282
P+ S Y + + FPKL+ LD E I + +T ++N S
Sbjct: 331 PLCSTFSDQSAYVSAIRDCFPKLLRLDG----RELSAPVIVDIDSSETMKPCKENFTGSE 386
Query: 283 S-----TDFITNFLNLWDS-NRMQLMGLYTPQSQFSLSVDSSVPAATVPNAQTTPTFGHY 336
+ F+ + +++DS +R L+G Y ++ FSL++ P + Y
Sbjct: 387 TLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFD------PKDSAPSSLCKY 440
Query: 337 LPFSRNISKISSDKTIQERLRIGPEAIYEVFGSLPMTKHFLQEQPDAYSVQAWTFPQVQG 396
SRN+ + E LR I + +LP T+H L + V W + +
Sbjct: 441 FEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDL----SSILVDVWCQTE-RM 495
Query: 397 FVITLHGHFDETAKPEIDKSKTSQGSSASRGRRYNHGFTSTPNIKLSQKSFDRTMVLVPS 456
+++G F E SQGS +F RT + P
Sbjct: 496 LCFSVNGVFKEV-------EGQSQGSVL---------------------AFTRTFIATPG 527
Query: 457 PNGSVIIASDSLTIRPFCDSAWSKPPSPPHLQAQSVQHQPQMNVPLSQTPPNTSSIPGQI 516
+ S+ I +D L +R A + Q ++P+S
Sbjct: 528 SSSSLCIVNDELFVR----------------DASPQETQSAFSIPVS------------- 558
Query: 517 PGVLGSTPLQFSPEVQAKLSPVQLELLQKLHLETKLNAEYTYMLAEQSLWNYDNAIQGFR 576
S + LS Q E++Q ++ + E++ + + WNY A Q F
Sbjct: 559 ---------TLSSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFT 609
Query: 577 --NSANNLPREAF 587
+ +P EAF
Sbjct: 610 MLQTEGKIPAEAF 622
>Hs15487670 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 619
Score = 86.3 bits (212), Expect = 1e-16
Identities = 116/518 (22%), Positives = 212/518 (40%), Gaps = 102/518 (19%)
Query: 86 SLKIHKAAGGNT--NPNTNDTITVLRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKN 143
S+ I+ +A +T N + + L+ ++ +RY+ + LDL L +DP+LV + +
Sbjct: 188 SIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVV- 246
Query: 144 VNTQSKMFPAMMKVASKEPSMVVESINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSIS 203
+N +S M + + P ++ S+NLS+N L ++ ++++ Q P+LK L ++ N +
Sbjct: 247 LNRRSCMAATLRIIEENIPELL--SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 304
Query: 204 RFHSLEVWKNKFKELRELLMMNNPI----TSDRLYRTEMLRIFPKLVILDN-----VVVR 254
L+ K K +L EL + N + Y + + FPKL+ LD +
Sbjct: 305 SERELD--KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF 362
Query: 255 DEQKLLSIYSLPVQQTQFFFEDNGLASSSTDFITNFLNLWDS-NRMQLMGLYTPQSQFSL 313
D + + +LP + +F +N L S F+ + ++DS +R L+ Y + SL
Sbjct: 363 DVE---APTTLPPCKGSYFGTEN-LKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSL 418
Query: 314 SVDSSVPAATVPNAQTTPTFGHYLPFSRNISKISSDKTIQERLRIGPEA-IYEVFGSLPM 372
S+ +P + Y SRN+ K+ D T++ RL + LP
Sbjct: 419 SI------PFIPQNPARSSLAEYFKDSRNVKKL-KDPTLRFRLLKHTRLNVVAFLNELPK 471
Query: 373 TKHFLQEQPDAYSVQAWTFPQVQGFVITLHGHFDETAKPEIDKSKTSQGSSASRGRRYNH 432
T+H + S Q T +++G F E D
Sbjct: 472 TQHDVNSFVVDISAQTSTL-----LCFSVNGVFKEVDGKSRD------------------ 508
Query: 433 GFTSTPNIKLSQKSFDRTMVLVPSPNGSVIIASDSLTIRPFCDSAWSKPPSPPHLQAQSV 492
S ++F RT + VP+ N + I +D L +R + ++ +
Sbjct: 509 ----------SLRAFTRTFIAVPASNSGLCIVNDELFVR--------------NASSEEI 544
Query: 493 QHQPQMNVPLSQTPPNTSSIPGQIPGVLGSTPLQFSPEVQAKLSPVQLELLQKLHLETKL 552
Q M P P++S +P LSP Q E+LQ ++ +
Sbjct: 545 QRAFAMPAP----TPSSSPVP--------------------TLSPEQQEMLQAFSTQSGM 580
Query: 553 NAEYTYMLAEQSLWNYDNAIQGFRN--SANNLPREAFI 588
N E++ + + W+Y + Q F + + +P AF+
Sbjct: 581 NLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFM 618
>7292559 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 534
Score = 67.4 bits (163), Expect = 6e-11
Identities = 64/270 (23%), Positives = 118/270 (43%), Gaps = 22/270 (8%)
Query: 108 LRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKEPSMVVE 167
++ + +RYN+QT+ LDL DP+L Q P + Q+ M A+ + P + E
Sbjct: 106 MKVTMAKRYNIQTKALDLSRFHADPDLKQ-VFCP--LFRQNVMGAAIDIMCDNIPDL--E 160
Query: 168 SINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSISRFHSLEVWKNKFKELRELLMMNNP 227
++NL+DN++ + + + P+LK L + +N I L V +N + EL++ NNP
Sbjct: 161 ALNLNDNSISSMEAFKGVEKRLPNLKILYLGDNKIPSLAHLVVLRN--LSILELVLKNNP 218
Query: 228 ITSDRLYRTEMLRIFPKLVILDNVVVRDEQKLLSIYSLPVQQTQFFFEDNGLASSSTDFI 287
S + +R L+ + D LS ++ + D A F+
Sbjct: 219 CRSRYKDSQQFIRYTMDGETLEPQITFD----LSEQGRLLETKASYLCDVAGAEVVRQFL 274
Query: 288 TNFLNLWDS-NRMQLMGLYTPQSQFSLSVDSSVPAATVPNAQTTPTFGHYLPFSRNISK- 345
+ ++DS NR L+ Y ++ S+S +P+A + F+RN+ +
Sbjct: 275 DQYFRIFDSGNRQALLDAYHEKAMLSIS---------MPSASQAGRLNSFWKFNRNLRRL 325
Query: 346 ISSDKTIQERLRIGPEAIYEVFGSLPMTKH 375
++ ++ L+ G A P T+H
Sbjct: 326 LNGEENRTRNLKYGRLACVSTLDEWPKTQH 355
>Hs15487668 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 302
Score = 57.8 bits (138), Expect = 5e-08
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
Query: 107 VLRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKE-PSMV 165
+L+ + +RYNV + LDL NL DP+L+ R + + + A +K+ + P ++
Sbjct: 42 MLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDI--DIILNRRNCMAATLKITERNFPELL 99
Query: 166 VESINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSISRFHSLEVWKNKFKELRELLMMN 225
S+NL +N L ++G++ + + P +K L ++ N + + E+ K K +L EL +
Sbjct: 100 --SLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE--SAWELGKVKGLKLEELWLEG 155
Query: 226 NPITS----DRLYRTEMLRIFPKLVILD 249
NP+ S Y + + FPKL+ LD
Sbjct: 156 NPLCSTFSDQSAYVSAIRDCFPKLLRLD 183
>Hs15487666 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 305
Score = 57.8 bits (138), Expect = 5e-08
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
Query: 107 VLRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKE-PSMV 165
+L+ + +RYNV + LDL NL DP+L+ R + + + A +K+ + P ++
Sbjct: 42 MLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDI--DIILNRRNCMAATLKITERNFPELL 99
Query: 166 VESINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSISRFHSLEVWKNKFKELRELLMMN 225
S+NL +N L ++G++ + + P +K L ++ N + + E+ K K +L EL +
Sbjct: 100 --SLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE--SAWELGKVKGLKLEELWLEG 155
Query: 226 NPITS----DRLYRTEMLRIFPKLVILD 249
NP+ S Y + + FPKL+ LD
Sbjct: 156 NPLCSTFSDQSAYVSAIRDCFPKLLRLD 183
>Hs15487662 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 368
Score = 57.8 bits (138), Expect = 5e-08
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
Query: 107 VLRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKE-PSMV 165
+L+ + +RYNV + LDL NL DP+L+ R + + + A +K+ + P ++
Sbjct: 105 MLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDI--DIILNRRNCMAATLKITERNFPELL 162
Query: 166 VESINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSISRFHSLEVWKNKFKELRELLMMN 225
S+NL +N L ++G++ + + P +K L ++ N + + E+ K K +L EL +
Sbjct: 163 --SLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE--SAWELGKVKGLKLEELWLEG 218
Query: 226 NPITS----DRLYRTEMLRIFPKLVILD 249
NP+ S Y + + FPKL+ LD
Sbjct: 219 NPLCSTFSDQSAYVSAIRDCFPKLLRLD 246
>Hs15487660 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 397
Score = 57.8 bits (138), Expect = 5e-08
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
Query: 107 VLRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKE-PSMV 165
+L+ + +RYNV + LDL NL DP+L+ R + + + A +K+ + P ++
Sbjct: 105 MLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDI--DIILNRRNCMAATLKITERNFPELL 162
Query: 166 VESINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSISRFHSLEVWKNKFKELRELLMMN 225
S+NL +N L ++G++ + + P +K L ++ N + + E+ K K +L EL +
Sbjct: 163 --SLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLE--SAWELGKVKGLKLEELWLEG 218
Query: 226 NPITS----DRLYRTEMLRIFPKLVILD 249
NP+ S Y + + FPKL+ LD
Sbjct: 219 NPLCSTFSDQSAYVSAIRDCFPKLLRLD 246
>CE08180 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 628
Score = 56.2 bits (134), Expect = 1e-07
Identities = 110/538 (20%), Positives = 198/538 (36%), Gaps = 99/538 (18%)
Query: 83 AGNSLKIHKAAGGNTNPNTN-----------DTITVLRNVLLRRYNVQTRMLDLGNLFND 131
A N +HK +G T+ + I ++ V+ +R+N + R+LDL N D
Sbjct: 155 ANNRRVVHKESGTRVEFYTSKVPAPWMKLKREEIEIIHRVVDKRHNAENRVLDLSNFHED 214
Query: 132 PELVQRGMAPKNVNTQSKMFPAMMKVASKEPSMVVESINLSDNNLRDVNGVTTLAQTFPH 191
E + M N+ + M + + K ++V +++LS+N +R ++ + L
Sbjct: 215 EEFKAKDMM-MNLTKGNVMLTVLDHIDDKYGNIV--ALSLSNNRIRHLDYASALVSIAKF 271
Query: 192 LKNLCIANNSISRFHSLEVWKNKFKEL--RELLMMNNPI----TSDRLYRTEMLRIFPKL 245
+ L +++N IS LE KF L NP+ T Y + + + FP+
Sbjct: 272 VMELDLSHNHISTEKELE----KFAGLPVERFFFEGNPVVESFTQRAAYISYIHQSFPRC 327
Query: 246 VILDNVVVRDEQKLLSIYSLPVQQTQFF----FEDNGLASSSTDFITNFLNLWDS----- 296
+LD V V Q L+ L + F + + + F+T++ + +D
Sbjct: 328 NMLDGVEV---QPLVVGPDLDIHDAMPFRAGYYPNPQIRVLVEQFVTSYFDFYDGPDGQR 384
Query: 297 NRMQLMGLY-TPQSQFSLSVDSSVPAATVPNAQTTPTFGHYLPFSRNISKISS-DKTIQE 354
R L Y S FSL+++ + ++ F Y S N+ K +
Sbjct: 385 TRRNLHNAYDADASTFSLTIE-HLRGSSHARHHNDECFAQYAGVSHNVLKQERFARHRAS 443
Query: 355 RLRIGPEAIYEVFGSLPMTKHFLQEQPDAYSVQAW-TFPQVQGFVITLHGHFDETAKPEI 413
R G I LP + H D + V + + GF +
Sbjct: 444 RSARGAMDIAVALSKLPTSSH----MRDTFIVDVFLQSNDLLGFTV-------------- 485
Query: 414 DKSKTSQGSSASRGRRYNHGFTSTPNIKLSQKSFDRTMVLVPSPNGSVIIASDSLTIRPF 473
+G + T TP S F R+ ++ P N SV + SD L I
Sbjct: 486 ------------QGLFCDGDLTQTP----SPSFFSRSFLVSPRENDSVAVISDQLFI--- 526
Query: 474 CDSAWSKPPSPPHLQAQSVQHQPQMNVPLSQTPPNTSSIPGQIPGV----LGSTPLQFSP 529
S+ + Q+ N +++ Q+ V +G + F
Sbjct: 527 --------------TVASLDRLEKFKKLYDQSIANGAAVE-QVSAVQIAQIGVNGMGFD- 570
Query: 530 EVQAKLSPVQLELLQKLHLETKLNAEYTYMLAEQSLWNYDNAIQGFRNSANNLPREAF 587
A P++ E+++ + + + ++ WN+D A Q F +++P EAF
Sbjct: 571 --GAPALPIREEMIKAMCQFSGMIPPFSEKCLADCAWNFDFACQKFNEIKSSVPAEAF 626
>7298820 [A] KOG3763 mRNA export factor TAP/MEX67
Length = 487
Score = 53.1 bits (126), Expect = 1e-06
Identities = 43/163 (26%), Positives = 77/163 (46%), Gaps = 9/163 (5%)
Query: 108 LRNVLLRRYNVQTRMLDLGNLFNDPELVQRGMAPKNVNTQSKMFPAMMKVASKEPSMVVE 167
L VLL RY+ R LDL + D L A N S ++ + +E + E
Sbjct: 324 LTMVLLDRYDPVERSLDLTLFYKDKALCGEFFALAESNCMS----TVLGIVDREMPEL-E 378
Query: 168 SINLSDNNLRDVNGVTTLAQTFPHLKNLCIANNSISRFHSLEVWKNKFKELRELLMMNNP 227
+ L N+L ++ + + FP L ++ + +N I +SL +F L EL +++NP
Sbjct: 379 RLILDGNHLTNLWVFRKVERRFPRLHSISLKHNDIENIYSLR--NLQFLPLAELNLLDNP 436
Query: 228 ITSDRLYRTEMLRIFPKLVILDNVVVRDEQKLLSIYSLPVQQT 270
+ + Y E+L I+P L +L+ + V + ++ + +Q T
Sbjct: 437 LPAG--YEKEVLDIWPSLQVLNKIQVTPDPAMMQLVERVLQHT 477
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,128,049
Number of Sequences: 60738
Number of extensions: 1518491
Number of successful extensions: 5455
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5427
Number of HSP's gapped (non-prelim): 16
length of query: 588
length of database: 30,389,216
effective HSP length: 112
effective length of query: 476
effective length of database: 23,586,560
effective search space: 11227202560
effective search space used: 11227202560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)