ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII2461 good A KOG2749 RNA processing and modification mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1

Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII2461 861625  862935 437  
         (437 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   
Score E Sequences producing significant alignments: (bits) Value YOR250c [A] KOG2749 mRNA cleavage and polyadenylation factor IA/... 407 e-113 SPAC22H10.05c [A] KOG2749 mRNA cleavage and polyadenylation fact... 177 4e-44 At3g04680 [A] KOG2749 mRNA cleavage and polyadenylation factor I... 136 5e-32 At5g39930 [A] KOG2749 mRNA cleavage and polyadenylation factor I... 115 1e-25 Hs5803029 [A] KOG2749 mRNA cleavage and polyadenylation factor I... 114 3e-25 CE17941 [A] KOG2749 mRNA cleavage and polyadenylation factor IA/... 112 1e-24 7303312 [A] KOG2749 mRNA cleavage and polyadenylation factor IA/... 102 1e-21 >YOR250c [A] KOG2749 mRNA cleavage and polyadenylation factor IA/II complex subunit CLP1 Length = 445 Score = 407 bits (1046), Expect = e-113 Identities = 211/425 (49%), Positives = 293/425 (68%), Gaps = 12/425 (2%) Query: 18 LPQGHEWTVQVPAGSKLTVIVKYGIAEILGTELANDVPYTFQGVIVNIYAIERSMIEWKC 77 +P+G +W + + A KL V V GI EI GTELA D YTFQ IYA+E + + WKC Sbjct: 28 IPKGSDWQIDLKAEGKLIVKVNSGIVEIFGTELAVDDEYTFQNWKFPIYAVEETELLWKC 87 Query: 78 LEELEPKVSENKSYHA--YIYNLNFALERLRLSSFNGPRVLIVGNASTGKSSLAQMLCSY 135 +L K H YIYNL+F LE++R+S+F GPRV+IVG + TGK+SL++ LCSY Sbjct: 88 -PDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 146 Query: 136 ALKIRHYQPLLVNLNPQDGVFSLPGSITATPISELLDVESSIWGQSITTGATKLHNKQPL 195 ALK YQPL +NL+PQ +F++PG I+ATPIS++LD + WGQS+T+GAT LHNKQP+ Sbjct: 147 ALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPM 206 Query: 196 VKNYGLENIRDNRPLYLSTITQLASGVQQRLKNDPIVRRSGVIIDTPKLSHLDTEDWSEV 255 VKN+GLE I +N+ LYL I+QL V QRL DP VRRSG I+DTP +S LD E+ +E+ Sbjct: 207 VKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLD-ENLAEL 265 Query: 256 GHMIEQFDIN-AIVVCAESDDLAIELSEVFRTKIG--SIVRIPPPGSIIAIDDIMRRALQ 312 H+IE+ ++N +V+C+E+D L ++ + F ++G +I IP + A+DD+ +R+LQ Sbjct: 266 HHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQ 325 Query: 313 RVQIREYFYGTTETVLSPYTMGAGFEELTVFRPRNISEYGEDKKDVDLTVFDKIEVNSSN 372 R IREYFYG+ +T LSPY +G +E+LT+++P N+ + +V + + SN Sbjct: 326 RTSIREYFYGSLDTALSPYAIGVDYEDLTIWKPSNVFD-----NEVGRVELFPVTITPSN 380 Query: 373 LQHAIIAITNISRKESQDKLNTASIIGYGLITEVNDSKKKLRVLLPVPSRIPDRAMILTE 432 LQHAIIAIT R+ Q + + I+G+ LITEVN+ ++KLRVLLPVP R+P +AMILT Sbjct: 381 LQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTS 440 Query: 433 YRYLE 437 YRYLE Sbjct: 441 YRYLE 445 >SPAC22H10.05c [A] KOG2749 mRNA cleavage and polyadenylation factor IA/II complex subunit CLP1 Length = 456 Score = 177 bits (448), Expect = 4e-44 Identities = 140/457 (30%), Positives = 233/457 (50%), Gaps = 43/457 (9%) Query: 18 LPQGHEWTVQVPAGSKLTVIVKYGIAEILGTELANDVPYTFQGVIVNIYAIERSMIEWKC 77 +P+ EW +V + + + + G AE GTELA PY F V IY + +E + Sbjct: 6 IPKECEWRFEVDEPA-IQIRLVSGNAEYFGTELALGPPYHFTRVKGAIYTWQGCTLEVEG 64 Query: 78 LEELEPKVSENKSYHAYIYNLNFALERLRLSSFN---------GPRVLIVGNASTGKSSL 128 +E V+E Y+ NL+FALE LRL + N GP V ++G S GK+S+ Sbjct: 65 EPSVE-YVAEETPMSTYL-NLHFALEGLRLQAENAAANDESSYGPCVCLIGPRSCGKTSV 122 Query: 129 AQMLCSYALKIRHYQPLLVNLNPQDGVFSLPGSITATPISELLDVESSI-WGQSITTGAT 187 ++L SYALK + P+ VNL+P + +LPGSI+A + +LD++ + +G S +TG T Sbjct: 123 LKILESYALKQSRH-PICVNLDPTQPMLALPGSISAFHNATILDIQDADGFGASTSTGPT 181 Query: 188 KLHNKQPLVKNYGLENIRDNRPLYLSTITQLASGVQQRLKNDPIVRRSGVIIDTPKLSHL 247 + K PLV N+GL++ DN LY ++++LA V R+ R SG ++DT + Sbjct: 182 HVLAKVPLVYNFGLDSPLDNPKLYKLSLSRLALAVHSRMSQSKDARVSGCLVDTSSIQE- 240 Query: 248 DTEDWSEVGH-MIEQFDINAIVVCAESDDLAIELSEVFRTKIG-SIVRIPPPGSIIAIDD 305 + E + ++ H +I F IN I+V S+ L + + S+V++ G I ++ Sbjct: 241 NAEKYQDILHSIITDFRINIIIVLG-SERLYSSMKRKYADATWLSVVKVSSSGGCIDREE 299 Query: 306 IMRRALQRVQIREYFYGTTETVLSPYTMGAGFEELTVFRPRNISEYGEDKKDVDL----- 360 + Q I++YFYG LSP +M +L V+R SE G + L Sbjct: 300 EWIQQFQARCIKQYFYGDDRMPLSPLSMIVDSTQLVVYRVLEASESGPKSSVLPLGFEEE 359 Query: 361 -TVFDKIEVNSS-------------------NLQHAIIAITNISRKESQDKLNTASIIGY 400 T +K + N+S LQ++I+A++++ E + + + IIGY Sbjct: 360 NTQSEKQDGNTSLRLHGKGEFLERISTEAMTILQNSILAVSSVGEDEDEATVVDSCIIGY 419 Query: 401 GLITEVNDSKKKLRVLLPVPSRIPDRAMILTEYRYLE 437 +++V+D K ++ +L PVP ++P A+I+ ++ E Sbjct: 420 VFVSDVDDVKNRMTLLSPVPEQLPSNALIMGTCKWQE 456 >At3g04680 [A] KOG2749 mRNA cleavage and polyadenylation factor IA/II complex subunit CLP1 Length = 444 Score = 136 bits (343), Expect = 5e-32 Identities = 121/447 (27%), Positives = 219/447 (48%), Gaps = 43/447 (9%) Query: 10 SETTKTSSLPQGHEWTVQVPAGSKLTVIVKYGIAEILGTELANDVPYTFQGVI-VNIYAI 68 S K L + E ++V + L + V G AEI G+EL ++ TF + ++ Sbjct: 20 SANLKQVKLERESELRIEV-SEEPLRLRVVNGTAEIFGSELPPEIWRTFPPRMKFAVFTW 78 Query: 69 ERSMIEWKCLEELEPKVSENKSYHAYIYNLNFALERLRL----------SSFNGPRVLIV 118 + IE + E + E +YI N++ L+ R S GPRV++V Sbjct: 79 YGATIEMDGVTETDYTADETPMV-SYI-NVHAILDARRRFAKASTSNDPESSQGPRVIVV 136 Query: 119 GNASTGKSSLAQMLCSYALKIRHYQPLLVNLNPQDGVFSLPGSITATPISELLDVESSIW 178 G +GKS+L +ML S+A K + ++P V+L+ G ++PGSI A PI LD + Sbjct: 137 GPTDSGKSTLTKMLLSWAAK-QGWRPTFVDLDVGQGSITIPGSIAAAPIEMPLD---PVE 192 Query: 179 GQSITTGATKLHNKQPLVKNYGLENIRDNRPLYLSTITQLASGVQQRLKNDPIVRRSGVI 238 G + LV YG + N LY + + +LA ++++ +P R +G++ Sbjct: 193 GFPLDMA---------LVYYYGHASPNMNVELYKALVKELAQVLEKQFVGNPESRAAGMV 243 Query: 239 IDTPKLSHLDTEDWSEVGHMIEQFDINAIVVCAESDDLAIELSEVFRTKIG-SIVRIPPP 297 I+T + ++ + + H I+ F+ + ++V + + L L +V R+K +V++ Sbjct: 244 INT--MGWIEGIGYELLLHAIDTFNASVVLVLGQ-EKLFSRLKDVLRSKSNVDVVKLHKS 300 Query: 298 GSIIAIDDIMRRALQRVQIREYFYGTTETVLSPYTMGAGFEELTVFR-------PRNISE 350 G ++A +R+ + +I+EYFYG ++ LSPY + F +L VFR P++ Sbjct: 301 GGVVARVKEVRKRSRNFKIQEYFYGLSKE-LSPYANTSSFSDLQVFRIGGGPQAPKSALP 359 Query: 351 YGEDKKDVDLTVFDKIEVNSSNLQHAIIAITNISRKESQDKLNTASIIGYGLITEVNDSK 410 G L V + ++ +L H+++A+ S E D++ ++++ G+ +TEVN K Sbjct: 360 AGSTSVSNPLRV-TPVNIDDRDLLHSVLAV---SYAEEPDQIISSNVSGFVYVTEVNVQK 415 Query: 411 KKLRVLLPVPSRIPDRAMILTEYRYLE 437 KK+ L P P +P + ++ +LE Sbjct: 416 KKITYLAPSPGTLPSKLLVAGSLAWLE 442 >At5g39930 [A] KOG2749 mRNA cleavage and polyadenylation factor IA/II complex subunit CLP1 Length = 423 Score = 115 bits (289), Expect = 1e-25 Identities = 103/430 (23%), Positives = 201/430 (45%), Gaps = 42/430 (9%) Query: 18 LPQGHEWTVQVPAGSKLTVIVKYGIAEILGTELANDVPYTFQGVIV-NIYAIERSMIEWK 76 L + E +++ S L + + G AEI G EL ++V TF ++ ++ + IE Sbjct: 11 LEKQSELRIELQPTSPLRLRLLDGKAEIFGYELPHEVWITFPPLMTFAVFTWYGATIEID 70 Query: 77 CLEELEPKVSENKSYHAYIYNLNFALERLRLSSFN-------GPRVLIVGNASTGKSSLA 129 + E E + + + ++R R++S GPRV+IVG+ +GKS+LA Sbjct: 71 GITGNEYISCETPMVNYLGLHNSLQVQRHRVTSSTRDSASSQGPRVIIVGDIDSGKSTLA 130 Query: 130 QMLCSYALKIRHYQPLLVNLNPQDGVFSLPGSITATPISELLDVESSIWGQSITTGATKL 189 +ML ++A+K ++P V+LN ++PG+I A PI L+D + G + Sbjct: 131 KMLLNWAVK-DGWKPTFVDLNVGQSSITIPGTIAAAPIKMLVD---PVEGFPL------- 179 Query: 190 HNKQPLVKNYGLENIRDNRPLYLSTITQLASGVQQRLKNDPIVRRSGVIIDTPKLSHLDT 249 + L+ +GL N N LY + + +LA +++ + R SG++IDT + + Sbjct: 180 --DKALIHYFGLTNPSVNLRLYRTLVEELARELKEEFSANAESRASGMVIDT--MGFIVR 235 Query: 250 EDWSEVGHMIEQFDINAIVVCAESDDLAIELSEVFRTKIG-SIVRIPPPGSIIAIDDIMR 308 E ++ + H I F+ + ++V + + L +L + + K ++ + + + R Sbjct: 236 EGYALLLHAIRTFNASLVIVVGQEEKLVYDLKKNLKFKKNLQVLNLEKSEGVFSRSSDFR 295 Query: 309 RALQRVQIREYFYGTTETVLSPYTMGAGFEELTVFR--------PRNISEYGEDKKDVDL 360 + L+ I+ YFYG T L+ YT F ++ V+R + + G D + L Sbjct: 296 KTLRNSNIQNYFYGVTND-LTVYTKTVKFSDVQVYRIGDFRVSGSTSAHQRGNDPLKITL 354 Query: 361 TVFDKIEVNSSNLQHAIIAITNISRKESQDKLNTASIIGYGLITEVNDSKKKLRVLLPVP 420 D +H + + IS D++ ++ + G+ I V+ S++++ + P Sbjct: 355 VTID---------EHLVNKVLAISYAIKPDQIISSIVAGFVCIKNVDISEERITYVSPSA 405 Query: 421 SRIPDRAMIL 430 + +P + +IL Sbjct: 406 AELPSKILIL 415 >Hs5803029 [A] KOG2749 mRNA cleavage and polyadenylation factor IA/II complex subunit CLP1 Length = 425 Score = 114 bits (285), Expect = 3e-25 Identities = 107/447 (23%), Positives = 207/447 (45%), Gaps = 41/447 (9%) Query: 5 EFSEVSETTKTSSLPQGHEWTVQVPAGSKLTVIVKYGIAEILGTELANDVPYTFQ-GVIV 63 E ++ + T L + E +V A + + + G+AEI GTEL + +TF G V Sbjct: 4 EANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAGAKV 63 Query: 64 NIYAIERSMIEWKCLEELEPKVSENKSYHAYIYNLNFALERLRLSSFN----GPRVLIVG 119 ++ ++ E+ VS++ Y+ N + ALE++R + GPRV++VG Sbjct: 64 AVFTWHGCSVQLSGRTEVA-YVSKDTPMLLYL-NTHTALEQMRRQAEKEEERGPRVMVVG 121 Query: 120 NASTGKSSLAQMLCSYALKIRHYQPLLVNLNPQDGVFSLPGSITATPISELLDVESSIWG 179 GKS++ ++L +YA+++ +P V L+ G S+PG++ A I DVE G Sbjct: 122 PTDVGKSTVCRLLLNYAVRLGR-RPTYVELDVGQGSVSIPGTMGALYIERPADVEE---G 177 Query: 180 QSITTGATKLHNKQPLVKNYGLENIRDNRPLYLSTITQLASGVQQRLKNDPIVRRSGVII 239 SI + PLV ++G N LY ++LA QR + + SG +I Sbjct: 178 FSI---------QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVI 228 Query: 240 DTPKLSHLDTEDWSEVGHMIEQFDINAIVVCAES---DDLAIELSEVFRTKIGSIVRIPP 296 +T + + + H F+++ +VV + ++L +L RT V +P Sbjct: 229 NT--CGWVKGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRT-----VLLPK 281 Query: 297 PGSIIAIDDIMRRALQRVQIREYFYGTTETVLSPYTMGAGFEELTVFR------PRNISE 350 G ++ RR + +IREYFYG P+ F ++ +++ P + Sbjct: 282 SGGVVERSKDFRRECRDERIREYFYG-FRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLP 340 Query: 351 YGEDKKDVDLTVFDKIEVNSSNLQHAIIAITNISRKESQDKLNTASIIGYGLITEVNDSK 410 G ++D L + ++ H +++++ + + +++ L+ S+ G+ ++T V+ Sbjct: 341 LGMSQEDNQLKLVP--VTPGRDMVHHLLSVS--TAEGTEENLSETSVAGFIVVTSVDLEH 396 Query: 411 KKLRVLLPVPSRIPDRAMILTEYRYLE 437 + VL P P +P +++ + R+++ Sbjct: 397 QVFTVLSPAPRPLPKNFLLIMDIRFMD 423 >CE17941 [A] KOG2749 mRNA cleavage and polyadenylation factor IA/II complex subunit CLP1 Length = 428 Score = 112 bits (279), Expect = 1e-24 Identities = 95/417 (22%), Positives = 197/417 (46%), Gaps = 47/417 (11%) Query: 41 GIAEILGTELANDVPYTFQGVI-VNIYAIERSMIEWKCLEELEPKVSENKSYHAYIYNLN 99 G AEI GTEL + YTF V + + + IE E V+E+ Y+ N++ Sbjct: 34 GYAEIFGTELLLNKKYTFPAKSRVAAFTWKGATIELVGTTE-SAYVAESTPMVIYL-NIH 91 Query: 100 FALERLRL----------SSFNGPRVLIVGNASTGKSSLAQMLCSYALKIRHYQPLLVNL 149 A+E +R + GPR+L+VG GK++++++LC+Y+++ + P+ V L Sbjct: 92 AAMEEVRKKREEQAAGNSNKAKGPRLLLVGPTDVGKTTVSRILCNYSVR-QGRTPIFVEL 150 Query: 150 NPQDGVFSLPGSITATPISELLDVESSIWGQSITTGATKLHNKQPLVKNYGLENIRDNRP 209 + S+PG++ A + + DV QP+V N+G + N Sbjct: 151 DVGQNSVSVPGTVAAVLVQKTADVIDG------------FERNQPIVFNFGHTSPSANLS 198 Query: 210 LYLSTITQLASGVQQRLKNDPIVRRSGVIIDTPKLSHLDTEDWSEVGHMIEQFDINAIVV 269 LY + ++A+ + +++ + + G+II+T +D E + + F+++ ++V Sbjct: 199 LYEALFKEMATTLNAQIQENDEAKIGGMIINT--CGWVDGEGYKCIVKAASAFEVDVVIV 256 Query: 270 CAES---DDLAIELSEVFRTKIGSIVRIPPPGSIIAIDDIMRRALQRVQIREYFYGTTET 326 DL+ EL E R + +P G + +R ++ + YFYGT Sbjct: 257 LDHERLYSDLSKELPEFVR-----LTHVPKSGGVEQRTGQIRSKMRGENVHRYFYGTRAN 311 Query: 327 VLSPYTMGAGFEELTVFR------PRNISEYGEDKKDVDLTVFDKIEVNSSNLQHAIIAI 380 L P+T F+++T+ + P + +G + ++ + + I S++++H + A Sbjct: 312 NLYPFTFDVSFDDVTLCKIGAEQLPDSCLPFGMEVENHETKLV--IMEPSADIKHHLFAF 369 Query: 381 TNISRKESQDKLNTASIIGYGLITEVNDSKKKLRVLLPVPSRIPDRAMILTEYRYLE 437 + ++ + + + + + G+ L+TEV+ K+ + +L P IP + ++ ++ +L+ Sbjct: 370 SRSTK--ADENVLKSPVFGFCLVTEVDLEKRTMSILCP-QRTIPSKVLVFSDITHLD 423 >7303312 [A] KOG2749 mRNA cleavage and polyadenylation factor IA/II complex subunit CLP1 Length = 423 Score = 102 bits (253), Expect = 1e-21 Identities = 98/421 (23%), Positives = 195/421 (46%), Gaps = 41/421 (9%) Query: 32 SKLTVIVKYGIAEILGTELANDVPYTFQ-GVIVNIYAIERSMIEWKCLEELEPKVSENKS 90 +K+ V + G AE+ GTEL Y F G V I+ + ++ ++ +S+ Sbjct: 26 AKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGCVLHVSGKMDV-CYISKETP 84 Query: 91 YHAYIYNLNFALERLRLSSFN----GPRVLIVGNASTGKSSLAQMLCSYALKIRHYQPLL 146 Y+ N + ALE+ R+ + GP ++VG GKS+L ++L +YA+++ +PL Sbjct: 85 MVQYV-NCHAALEQFRMEAEEKDRYGPVAMVVGPMDVGKSTLCRILLNYAVRVGR-RPLY 142 Query: 147 VNLNPQDGVFSLPGSITATPISELLDVESSIWGQSITTGATKLHNKQPLVKNYGLENIRD 206 +L+ G ++ GS+ I +VE PLV ++G ++ Sbjct: 143 ADLDVGQGSIAISGSVATILIERPANVEEGF------------AKTAPLVYHFGHKSPSG 190 Query: 207 NRPLYLSTITQLASGVQQRLKNDPIVRRSGVIIDTPKLSHLDTEDWSEVGHMIEQFDINA 266 N LY + ++++A Q L ++ + SG+II+T + ++ + H + + A Sbjct: 191 NSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINT--CGWVKGSGYAHLLHAAKAYGACA 248 Query: 267 IVVCAESDDLAIELSEVFRTKIGSIVRIPPPGSIIAIDDIMRRALQRVQIREYFYGTTET 326 I V + L +V K +V +P G ++ +R + +I+EYFYG T Sbjct: 249 IFVLDQERLYNELLRDV--PKGVHVVLLPKSGGVVERSKELRHEARDQRIKEYFYGNTRA 306 Query: 327 VLSPYTMGAGFEELTVFR------PRNISEYG---EDKKDVDLTVFDKIEVNSSNLQHAI 377 P++ F++L +++ P + G ED K + V + L H + Sbjct: 307 PFYPFSFEVKFQDLRLYKIGAPPLPDSCMPIGMKAEDNKTKVVAV-----TPTPALIHHV 361 Query: 378 IAITNISRKESQDKLNTASIIGYGLITEVNDSKKKLRVLLPVPSRIPDRAMIL-TEYRYL 436 +A++ + +D + ++ G+ +TEV+ ++ + +L P P +P A++L +E +++ Sbjct: 362 LALS--FAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALLLWSELQFM 419 Query: 437 E 437 + Sbjct: 420 D 420 Database: KOG eukaryal database 04/03 Posted date: Apr 14, 2003 1:07 PM Number of letters in database: 30,389,216 Number of sequences in database: 60,738 Lambda K H 0.317 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,157,024 Number of Sequences: 60738 Number of extensions: 1041331 Number of successful extensions: 3381 Number of sequences better than 1.0e-05: 7 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 3352 Number of HSP's gapped (non-prelim): 7 length of query: 437 length of database: 30,389,216 effective HSP length: 109 effective length of query: 328 effective length of database: 23,768,774 effective search space: 7796157872 effective search space used: 7796157872 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)