ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2493 good K KOG3169 Transcription RNA polymerase II transcriptional regulation mediator
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2493 875492 876295 268
(268 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR058c [K] KOG3169 RNA polymerase II transcriptional regulation... 196 4e-50
SPAC1002.15c [K] KOG3169 RNA polymerase II transcriptional regul... 91 2e-18
Hs4885481 [K] KOG3169 RNA polymerase II transcriptional regulati... 82 6e-16
At3g21350 [K] KOG3169 RNA polymerase II transcriptional regulati... 80 3e-15
7299249 [K] KOG3169 RNA polymerase II transcriptional regulation... 78 1e-14
CE25510 [K] KOG3169 RNA polymerase II transcriptional regulation... 60 4e-09
>YHR058c [K] KOG3169 RNA polymerase II transcriptional regulation mediator
Length = 295
Score = 196 bits (497), Expect = 4e-50
Identities = 114/297 (38%), Positives = 152/297 (50%), Gaps = 31/297 (10%)
Query: 1 MSLPPLDELQWKSPEWIQTFGLHTDNVLDYFSESPFFDKTSNNXXXXXXXXXX------- 53
M++ PLDELQWKSPEWIQ FGL T+NVLDYF+ESPFFDKTSNN
Sbjct: 1 MNVTPLDELQWKSPEWIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNA 60
Query: 54 XXXXXXXXMPLXXXXXXXXXXXXXTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVL 113
M L V P+ R +++ +YP++ LE+ELMK+ G EY+L
Sbjct: 61 AVNMTQNIMTLPDGKNGNLEEEFAYVDPARRQILF-KYPMYMQLEEELMKLDGTEYVLSS 119
Query: 114 VREPDLWIIRKQQRD---------GPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRLLSTN 164
VREPD W+IRKQ+R GP + L+DYY+IG+ +YQSPT++KI+Q+RL+ST+
Sbjct: 120 VREPDFWVIRKQRRTNNSGVGSAKGP-EIIPLQDYYIIGANIYQSPTIFKIVQSRLMSTS 178
Query: 165 YHLSHSLSQLNKLVEFHPAQGASFLRPEDPLCXXXXXX--------XXXXXXXXXXXXXX 216
YHL+ +L L L+EF P+QG + P D
Sbjct: 179 YHLNSTLESLYDLIEFQPSQGVHYKVPTDTSTTATAATNGNNAGGGSNKSSVRPTGGANM 238
Query: 217 XXXPETGPINXXXXXXXXXXXXIDPDRRQD-----SFNTEIMDKLMATSIKANPVYI 268
P T +N ID + TE++DKLM TSI++ P YI
Sbjct: 239 ATVPSTTNVNMTVNTMGTGGQTIDNGTGRTGNGNMGITTEMLDKLMVTSIRSTPNYI 295
>SPAC1002.15c [K] KOG3169 RNA polymerase II transcriptional regulation mediator
Length = 216
Score = 90.5 bits (223), Expect = 2e-18
Identities = 47/184 (25%), Positives = 83/184 (44%), Gaps = 38/184 (20%)
Query: 6 LDELQWKSPEWIQTFG-LHTDNVLDYFSESPFFDKTSNNXXXXXXXXXXXXXXXXXXMPL 64
L +QW+ PEW+Q+ G L T+NVL+YFS+SPF+ SNN
Sbjct: 11 LTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGD----- 65
Query: 65 XXXXXXXXXXXXXTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRK 124
L +L ++ GI+++++ R P LW+I+K
Sbjct: 66 --------------------------------LNSQLKRLTGIQFVIIHERPPFLWVIQK 93
Query: 125 QQRDGPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRLLSTNYHLSHSLSQLNKLVEFHPAQ 184
Q R + L Y+V +Y +P Y ++ R+L+ Y +L+++ K +++P +
Sbjct: 94 QNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALTKIEKFPQYNPQE 153
Query: 185 GASF 188
G ++
Sbjct: 154 GYTY 157
>Hs4885481 [K] KOG3169 RNA polymerase II transcriptional regulation mediator
Length = 157
Score = 82.4 bits (202), Expect = 6e-16
Identities = 51/179 (28%), Positives = 81/179 (44%), Gaps = 49/179 (27%)
Query: 9 LQWKSPEWIQTFGLHTDNVLDYFSE--SPFFDKTSNNXXXXXXXXXXXXXXXXXXMPLXX 66
+ W WI L++ +VLDYFSE +PF+D+T NN
Sbjct: 13 ISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNN----------------------- 47
Query: 67 XXXXXXXXXXXTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQ 126
E + + + L +M GIEYIL+ +EP L+IIRKQQ
Sbjct: 48 ----------------------EVVKMQRLTLEHLNQMVGIEYILLHAQEPILFIIRKQQ 85
Query: 127 RDGPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRLLSTNYHLSHSLSQLNKLVEFHPAQG 185
R P + L DYY+I +YQ+P + +I +R+L+ + + + + +HP++G
Sbjct: 86 RQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKG 144
>At3g21350 [K] KOG3169 RNA polymerase II transcriptional regulation mediator
Length = 164
Score = 80.1 bits (196), Expect = 3e-15
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 42/171 (24%)
Query: 9 LQWKSPEWIQTFGLHTDNVLDYFSESPFFDKTSNNXXXXXXXXXXXXXXXXXXMPLXXXX 68
+ ++ WI ++ L + + DYF+ SPF+D T NN
Sbjct: 4 ISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNE------------------------ 39
Query: 69 XXXXXXXXXTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQRD 128
I R +H + L KM G+EY+L EP+L++ RKQ+RD
Sbjct: 40 ------------------ILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRD 81
Query: 129 GPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRLLSTNYHLSHSLSQLNKLVE 179
GP K T + YY++ ++YQ+P + + R+ T Y++S + + +E
Sbjct: 82 GPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRTIYNISKAFTDAASKLE 132
>7299249 [K] KOG3169 RNA polymerase II transcriptional regulation mediator
Length = 247
Score = 77.8 bits (190), Expect = 1e-14
Identities = 34/87 (39%), Positives = 56/87 (64%)
Query: 99 KELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTTLRDYYVIGSAVYQSPTVYKIIQN 158
+ L M G+EYIL+ V EP L++IRKQ R P++ T + DYY+IG VY++P + +I +
Sbjct: 58 EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINS 117
Query: 159 RLLSTNYHLSHSLSQLNKLVEFHPAQG 185
R+L+T +L + + + +HP +G
Sbjct: 118 RILNTVVNLQSAFEEASSYARYHPNKG 144
>CE25510 [K] KOG3169 RNA polymerase II transcriptional regulation mediator
Length = 250
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/93 (33%), Positives = 56/93 (59%), Gaps = 1/93 (1%)
Query: 93 VHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTTLRDYYVIGSAVYQSPTV 152
V+ +E+ L M GI+Y+L +P L+II KQ+R+ T + + YYVI +V+Q+P +
Sbjct: 63 VNRTVEECLRTMPGIQYVL-WYSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDM 121
Query: 153 YKIIQNRLLSTNYHLSHSLSQLNKLVEFHPAQG 185
Y ++Q+RLL L ++ ++ ++ A+G
Sbjct: 122 YSLVQSRLLGALEPLRNAFGEVTNYSRYNTAKG 154
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,051,163
Number of Sequences: 60738
Number of extensions: 415264
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 12
length of query: 268
length of database: 30,389,216
effective HSP length: 105
effective length of query: 163
effective length of database: 24,011,726
effective search space: 3913911338
effective search space used: 3913911338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)