ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2592 good J KOG4759 Translation, ribosomal structure and biogenesis Ribosome recycling factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2592 911134 911856 241
(241 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHR038w [J] KOG4759 Ribosome recycling factor 211 6e-55
At3g63190 [J] KOG4759 Ribosome recycling factor 65 9e-11
At3g01800 [J] KOG4759 Ribosome recycling factor 65 1e-10
SPBC1709.09 [J] KOG4759 Ribosome recycling factor 49 8e-06
>YHR038w [J] KOG4759 Ribosome recycling factor
Length = 230
Score = 211 bits (538), Expect = 6e-55
Identities = 105/186 (56%), Positives = 142/186 (75%), Gaps = 2/186 (1%)
Query: 54 IDVKKYVIDATKQFEKTLELHKRKLAEQKVGTASPTIFNDLRVGKEGQKFTELAATSLKG 113
IDV + + A QF+KTLE+ K+K+ E K G +P +FN L V K +KFT++A TSLKG
Sbjct: 46 IDVNELLKKAETQFKKTLEIQKQKMNEIKQGNFNPKVFNSL-VFKNNRKFTDIATTSLKG 104
Query: 114 RNALIVTVFDPKDTKNIVSAIMAAGLNLNPERIPNNDQQLKVSLPPITTETRQAVCKDLK 173
+NAL++TVFDPKD K ++S ++AA LNL PER+PNND QLKVSLPP TTE+R V KDLK
Sbjct: 105 KNALLITVFDPKDVKTVISGVLAANLNLTPERVPNNDLQLKVSLPPPTTESRLKVAKDLK 164
Query: 174 KVFEDYKHSALKESLGHVRGEIMKELKHLQKKNDDVKKVIQDVEKIHKEYTIKLQEQLKQ 233
+VFE+YK S+LK+SLG +RG I+KE K KK+D V+K +D+EK+HK+Y KL +Q ++
Sbjct: 165 RVFEEYKQSSLKDSLGTIRGSILKEFKSF-KKDDAVRKAERDLEKLHKDYVNKLHDQFQK 223
Query: 234 AEKSVM 239
EKS++
Sbjct: 224 VEKSIV 229
>At3g63190 [J] KOG4759 Ribosome recycling factor
Length = 289
Score = 65.1 bits (157), Expect = 9e-11
Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 16/200 (8%)
Query: 51 IEIIDVKKYVI--DATKQFEKTLELHKRKLAEQKVGTASPTIFNDLRVGKEGQKFT--EL 106
IE I+ +K I D + EKT+E + + G ++ + + + V G + +
Sbjct: 93 IEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSI 152
Query: 107 AATSLKGRNALIVTVFDPKD--TKNIVSAIMAAGLNLNPERIPNNDQQ-LKVSLPPITTE 163
A S ++L++ +D T + AI A +N + PNND +++SLPP+T++
Sbjct: 153 AQISTPDGSSLLLQPYDKSRYMTNGALMAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSD 212
Query: 164 TRQAVCKDLKKVFEDYKHSALKESLGHVRGEIMKELKHLQKK----NDDVKKVIQDVEKI 219
R+ + K + K E+ K +L ++R + +K L+K+ D+VK + D++K+
Sbjct: 213 RRKELSKVVAKQSEEG-----KVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKL 267
Query: 220 HKEYTIKLQEQLKQAEKSVM 239
Y K++E KQ EK +M
Sbjct: 268 IDVYMKKIEELYKQKEKELM 287
>At3g01800 [J] KOG4759 Ribosome recycling factor
Length = 284
Score = 64.7 bits (156), Expect = 1e-10
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 63 ATKQFEKTLELHKRKLAEQKVGTASPTIFNDLRVGKEGQKF--TELAATSLKGRNALIVT 120
A+ Q E ++ R L + + G A+P + + + V G K LA S+ L V
Sbjct: 92 ASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVN 151
Query: 121 VFDPKDTKNIVSAIMAAGLNLNPE--------RIP-------NNDQQLKVSLPPITTETR 165
+DP K + AI+A+ L LNP+ IP +N L++SL PI
Sbjct: 152 PYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPAYESSSLSNFISLRLSLDPIYLYEL 211
Query: 166 QAVCKDLKKVFEDYKHSALKESLGHVRGEIMKELKHLQKK--NDDVKKVIQDVEKIHKEY 223
QA+CK + K E +K+S+ R + + +K D+VK++ ++V+++ K++
Sbjct: 212 QAMCKIVTKSSE-----VVKQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKF 266
Query: 224 TIKLQEQLKQAEKSV 238
++ K EK +
Sbjct: 267 VKSAEDMCKSKEKEI 281
>SPBC1709.09 [J] KOG4759 Ribosome recycling factor
Length = 244
Score = 48.5 bits (114), Expect = 8e-06
Identities = 53/192 (27%), Positives = 81/192 (41%), Gaps = 24/192 (12%)
Query: 65 KQFEKTLELHKRKLA---EQKVGTASPTIFNDL----------RVGKEGQKFTELAATSL 111
K FE ++L KLA ++ V S F L + + E+AA S
Sbjct: 60 KSFEAKMQLVHEKLAKRFQEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVSQ 119
Query: 112 KGRNALIVTVFDPKDTKNIVSAIMAAGLNLNPERIPNNDQQLKVSLPPITTETRQAVCKD 171
KG +I+ F+ D KNI+ AI + ++ N ++V T E+RQ
Sbjct: 120 KGSQQIIIRPFEDVDIKNILKAIEDSRYPFVANKL--NASTIEVKPQRTTLESRQ----Q 173
Query: 172 LKKVFEDYKHSALKESLGHVRGEIMKELKHLQKK----NDDVKKVIQDVEKIHKEYTIKL 227
L KV E Y + +E L +R E+ KE+ +K +DD K +++ K L
Sbjct: 174 LAKVLEGYAKDS-REQLSAMRTELKKEIAKNKKSKAWTSDDCYKAEAEMQTAFKNAINLL 232
Query: 228 QEQLKQAEKSVM 239
LK A K V+
Sbjct: 233 DSGLKSALKKVI 244
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.131 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,281,143
Number of Sequences: 60738
Number of extensions: 477640
Number of successful extensions: 2004
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2001
Number of HSP's gapped (non-prelim): 4
length of query: 241
length of database: 30,389,216
effective HSP length: 103
effective length of query: 138
effective length of database: 24,133,202
effective search space: 3330381876
effective search space used: 3330381876
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)