ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2620 good U KOG0781 Intracellular trafficking, secretion, and vesicular transport Signal recognition particle receptor, alpha subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2620 919128 920927 600
(600 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR292c [U] KOG0781 Signal recognition particle receptor alpha s... 697 0.0
SPBC3B9.03 [U] KOG0781 Signal recognition particle receptor alph... 316 6e-86
Hs20481445 [U] KOG0781 Signal recognition particle receptor alph... 263 4e-70
Hs4507223 [U] KOG0781 Signal recognition particle receptor alpha... 261 2e-69
7292603 [U] KOG0781 Signal recognition particle receptor alpha s... 240 4e-63
At4g30600 [U] KOG0781 Signal recognition particle receptor alpha... 232 1e-60
ECU10g0170 [U] KOG0781 Signal recognition particle receptor alph... 198 2e-50
At2g45770 [U] KOG0780 Signal recognition particle subunit Srp54 120 6e-27
CE10018 [U] KOG0781 Signal recognition particle receptor alpha s... 102 2e-21
SPCC188.06c [U] KOG0780 Signal recognition particle subunit Srp54 100 6e-21
YPR088c [U] KOG0780 Signal recognition particle subunit Srp54 100 8e-21
At1g48900 [U] KOG0780 Signal recognition particle subunit Srp54 94 5e-19
At1g15310 [U] KOG0780 Signal recognition particle subunit Srp54 92 3e-18
ECU04g0980 [U] KOG0780 Signal recognition particle subunit Srp54 89 1e-17
CE09524 [U] KOG0780 Signal recognition particle subunit Srp54 88 3e-17
7295492 [U] KOG0780 Signal recognition particle subunit Srp54 87 6e-17
Hs4507215 [U] KOG0780 Signal recognition particle subunit Srp54 87 7e-17
At5g03940 [U] KOG0780 Signal recognition particle subunit Srp54 84 5e-16
CE28419 [U] KOG0781 Signal recognition particle receptor alpha s... 84 6e-16
At5g49500 [U] KOG0780 Signal recognition particle subunit Srp54 79 3e-14
>YDR292c [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 621
Score = 697 bits (1798), Expect = 0.0
Identities = 375/627 (59%), Positives = 456/627 (71%), Gaps = 33/627 (5%)
Query: 1 MIDQFAVFTPAGNLLYGYNSLNKKFSETQINRFVSEFISQPVKDVTS---------KFPI 51
M DQ AVFTP G +LY YN L KKFSE QIN F+S+ I+ PV S F +
Sbjct: 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNL 60
Query: 52 ISTSDT-------SYMYHETKQPHLFLVVSFASSESIQLTAEAESVVVLATKLWESLGLN 104
++ + + +++ KQP L+ VV+FA ++++L E + + L KLW SL L+
Sbjct: 61 LTINSEHKNSPSFNALFYLNKQPELYFVVTFAE-QTLELNQETQQTLALVLKLWNSLHLS 119
Query: 105 EVILDNISGKGKKNVHNFRFITEGASDQISKFGSYFEVKYDEMKKTSQQKGKKHTANYNK 164
E IL N G+ +KN HN+ I +G D + KF YF +KY+E K T N +
Sbjct: 120 ESILKNRQGQNEKNKHNYVDILQGIEDDLKKFEQYFRIKYEESIKQDHINPDNFTKNGSV 179
Query: 165 QVPVSAANKGK-QSSKGKKENSQI--KARKWGRDG-LLEETAAMDES-LDFSEGNRTASP 219
+ K K + +KGKK+++ RKWGRDG +L+E D + LDFS N S
Sbjct: 180 PQSHNKNTKKKLRDTKGKKQSTGNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSS 239
Query: 220 PIAIGSDLESDMRNGSQFGKQNDKGEFLINEIDELLASNKEK------SKAKPTTSSPFS 273
+A+ S + D FG + + G+FLI EID+LL+S+K++ +K S+ F
Sbjct: 240 QVALDSTINKD-----SFGDRTEGGDFLIKEIDDLLSSHKDEITSGNEAKNSGYVSTAFG 294
Query: 274 FLQKHILGNKTISEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSV 333
FLQKH+LGNKTI+E DLK+VL+ L Q+LI+KNVAPE AD+L QVS DL+GSKT NWTSV
Sbjct: 295 FLQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSV 354
Query: 334 DQTARESLQKCLSSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNL 393
+ TARESL K L+ ILTP VSVDLL EIQ + +KKD G DPYVFS+VGVNGVGKSTNL
Sbjct: 355 ENTARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNL 414
Query: 394 SKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEY 453
SKLAFWLL+NN KVLIVACDTFRSGAVEQLRVHVENLAQL D +HVRG+KN+RGKTGN+Y
Sbjct: 415 SKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDY 474
Query: 454 VELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANP 513
VELFE GYGGS+LVTKIAKQAIKY++ ++FD+VLMDTAGRRHND TLMSPLKSFA+QA P
Sbjct: 475 VELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKP 534
Query: 514 DKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFFIISKCDTVGELLGTMVNMVYATSIP 573
DKIIMVGEALVGTDSVQQA NFN AFGK RNLDFFIISKCDTVGE+LGTMVNMVYAT IP
Sbjct: 535 DKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYATGIP 594
Query: 574 ILFIGVGQTYTDLRTLSVEWAVNSLLS 600
ILF+GVGQTYTDLRTLSV+WAVN+L+S
Sbjct: 595 ILFVGVGQTYTDLRTLSVKWAVNTLMS 621
>SPBC3B9.03 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 547
Score = 316 bits (810), Expect = 6e-86
Identities = 185/427 (43%), Positives = 260/427 (60%), Gaps = 37/427 (8%)
Query: 173 KGKQSSKGKKENSQIKARKWGRDGLLEETAAMDESLDFSEGNRTASPPIAIGSDLESDMR 232
+ KQ++ KK Q+ RKW EE AA++ S S ++T S L S +
Sbjct: 157 QSKQTNAPKKGKKQL--RKWDDQITEEEQAALNYSSQASSASQTVD-----NSQLSSIVG 209
Query: 233 NGSQFGKQNDKGEFLINEIDELLASNKEKSKAKPTTSSPFSFLQKHILGNKTISEEDLKT 292
N ++F K G+ +I++++ + ++ + + SS FS L +++G K + EEDL
Sbjct: 210 NNNKFQKTGS-GDVIISDLE----MDPNQTISNKSASSAFS-LFSNLIGGKYLKEEDLSP 263
Query: 293 VLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARESLQKCLSSILTPS 352
+L +++ L KNVA +A LC V LI K ++ +V T ++ + L+ ILTPS
Sbjct: 264 ILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTPS 323
Query: 353 VSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIVAC 412
S+DLLH I+ + K + N PY S++GVNGVGKST L+K+A+WLL NN ++L+ AC
Sbjct: 324 TSLDLLHSIRS-VRKNE----NRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAAC 378
Query: 413 DTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAK 472
DTFRSGA+EQL VHV+NL L + +ELF GYG + + + K
Sbjct: 379 DTFRSGAIEQLGVHVKNLQSLKGSS----------------IELFAQGYGKDS--SFVVK 420
Query: 473 QAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGEALVGTDSVQQA 532
A++YAK FDV+L+DTAGRRHND LM L+ F + DKI V EALVGTDS+ QA
Sbjct: 421 NAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEALVGTDSLAQA 480
Query: 533 HNFNQAFGKERNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVGQTYTDLRTLSVE 592
+F QA R LD FIISK DTVG+L+G MV MVYA +PI+F+G+GQTY+DLRTLSV+
Sbjct: 481 KHF-QASLYHRPLDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLSVD 539
Query: 593 WAVNSLL 599
W V+ L+
Sbjct: 540 WVVDQLM 546
>Hs20481445 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 638
Score = 263 bits (673), Expect = 4e-70
Identities = 166/435 (38%), Positives = 238/435 (54%), Gaps = 32/435 (7%)
Query: 171 ANKGKQSSKGKKENSQIKARKWGRDGLLEETAAMDESLDFSEGNRTASPPIAIGSDLESD 230
+NK +S KE + R W G A E LD+S +P A+ D+
Sbjct: 228 SNKSTKSD-APKEKGKKAPRVWELGG-----CANKEVLDYSTPTTNGTPEAALSEDINLI 281
Query: 231 MRNGSQFGKQNDKGEFLINEIDELLASNKEKSKAKPTTSSPFSFLQKHILGNKTISEEDL 290
GS G+ D + DE A N K A T + K ++G+K++S ED+
Sbjct: 282 RGTGSG-GQLQDLD--CSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDM 338
Query: 291 KTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARESLQKCLSSILT 350
++VLD ++ LI+KNVA ++A LC V+ L G +++V T +++LQ+ L IL
Sbjct: 339 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQ 398
Query: 351 PSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIV 410
P VD+L +I D+ PYV + GVNGVGKSTNL+K++FWLL+N VLI
Sbjct: 399 PQRRVDMLRDIM------DAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIA 452
Query: 411 ACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKI 470
ACDTFR+GAVEQLR H L+ L + G G V+LFE GYG I
Sbjct: 453 ACDTFRAGAVEQLRTHTRRLSAL-------HPPEKHG--GRTMVQLFEKGYGKD--AAGI 501
Query: 471 AKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGEALVGTDSVQ 530
A +AI +A+ + FDVVL+DTAGR ++A LM+ L PD ++ VGEALVG ++V
Sbjct: 502 AMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVD 561
Query: 531 QAHNFNQAFGKE------RNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVGQTYT 584
Q FN+A R +D +++K DT+ + +G ++M Y TS PI+F+G GQTY
Sbjct: 562 QLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYC 621
Query: 585 DLRTLSVEWAVNSLL 599
DLR+L+ + V +L+
Sbjct: 622 DLRSLNAKAVVAALM 636
>Hs4507223 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 638
Score = 261 bits (667), Expect = 2e-69
Identities = 163/435 (37%), Positives = 241/435 (54%), Gaps = 32/435 (7%)
Query: 171 ANKGKQSSKGKKENSQIKARKWGRDGLLEETAAMDESLDFSEGNRTASPPIAIGSDLESD 230
+NK +S KE + R W G A E LD+S +P A+ D+ +
Sbjct: 228 SNKSTKSD-APKEKGKKAPRVWELGG-----CANKEVLDYSTPTTNGTPEAALSEDI--N 279
Query: 231 MRNGSQFGKQNDKGEFLINEIDELLASNKEKSKAKPTTSSPFSFLQKHILGNKTISEEDL 290
+ G+ G Q + ++ + + + S K T F L K ++G+K++S ED+
Sbjct: 280 LIRGTGSGGQLQDLDCSSSDDEGAAQTLTKPSATKGTLGGMFGML-KGLVGSKSLSREDM 338
Query: 291 KTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARESLQKCLSSILT 350
++VLD ++ LI+KNVA ++A LC V+ L G +++V T +++LQ+ L IL
Sbjct: 339 ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQ 398
Query: 351 PSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIV 410
P VD+L +I D+ PYV + GVNGVGKSTNL+K++FWLL+N VLI
Sbjct: 399 PQRRVDMLRDIM------DAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIA 452
Query: 411 ACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKI 470
ACDTFR+GAVEQLR H L+ L + G G V+LFE GYG I
Sbjct: 453 ACDTFRAGAVEQLRTHTRRLSAL-------HPPEKHG--GRTMVQLFEKGYGKD--AAGI 501
Query: 471 AKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGEALVGTDSVQ 530
A +AI +A+ + FDVVL+DTAGR ++A LM+ L PD ++ VGEALVG ++V
Sbjct: 502 AMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVD 561
Query: 531 QAHNFNQAFGKE------RNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVGQTYT 584
Q FN+A R +D +++K DT+ + +G ++M Y TS PI+F+G GQTY
Sbjct: 562 QLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYC 621
Query: 585 DLRTLSVEWAVNSLL 599
DLR+L+ + V +L+
Sbjct: 622 DLRSLNAKAVVAALM 636
>7292603 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 631
Score = 240 bits (613), Expect = 4e-63
Identities = 155/433 (35%), Positives = 227/433 (51%), Gaps = 36/433 (8%)
Query: 177 SSKGKKENSQIKARKWGRDGLLEETAAMDESLDFSEGNRTASPPIAIGSDLESDMRNGSQ 236
S K E + K R W G ++ A +D S D SP ++ S++ G+
Sbjct: 207 SKSSKPEKAGKKPRVWDLGGNSKDAALLDRSRD--------SPDDVQYQNINSELV-GTM 257
Query: 237 FGKQNDKGEFLINEIDELLASNK----EKSKAKPTTSSPFSFLQKHILGNKTISEEDLKT 292
G D +E D AS++ E+ ++K K I+G KT+S DL+
Sbjct: 258 QGVIRDLDVESEDEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQP 317
Query: 293 VLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARESLQKCLSSILTPS 352
L+ ++ LISKNVA E+A LC+ V+ L G + + S+ +E+L + L IL+P
Sbjct: 318 ALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPK 377
Query: 353 VSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIVAC 412
+D++ + +S PY GVNGVGKSTNL+K+ FWL++N+ VLI AC
Sbjct: 378 RRIDIIRDAL------ESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAAC 431
Query: 413 DTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAK 472
DTFR+GAVEQLR H H+ G V+L+E GYG IA
Sbjct: 432 DTFRAGAVEQLRTHT---------RHLNALHPAAKHDGRNMVQLYEKGYGKD--AAGIAM 480
Query: 473 QAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGEALVGTDSVQQA 532
+AIK+A DVVL+DTAGR ++ LM L + NPD ++ VGEALVG ++V Q
Sbjct: 481 EAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQL 540
Query: 533 HNFNQA---FGKERN---LDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVGQTYTDL 586
FNQ+ + N +D +++K DT+ + +G ++M Y T PI+F+G GQTY DL
Sbjct: 541 VKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADL 600
Query: 587 RTLSVEWAVNSLL 599
+ ++V VNSL+
Sbjct: 601 KAINVNAVVNSLM 613
>At4g30600 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 634
Score = 232 bits (592), Expect = 1e-60
Identities = 151/441 (34%), Positives = 229/441 (51%), Gaps = 55/441 (12%)
Query: 169 SAANKGKQSSKGKKENSQIKARKWGRDGLLEETAAMDESLDFS----EGNRTASPPIAIG 224
S NK + ++ K+ ++ K R W ++ A LDF+ E I
Sbjct: 238 SIGNKSSKVAEPAKKATK-KNRVW------DDAAPKQSKLDFTDSIDENGNNDHVDIVAA 290
Query: 225 SDLESDMRNGSQFGKQNDKGEFLINEIDELLASNKEKSKAKPTTSSPFSFLQKHILGNKT 284
ES M F ++ +E D+ S+++ ++AK FS + + I G
Sbjct: 291 DQGESMMDKEEVFSSDSE------SEDDDEPGSDEKPAQAKK--KGWFSSVFQSITGKAN 342
Query: 285 ISEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARESLQKC 344
+ DL L +LK++L++KNVA E+A+ LC V L G K ++T + T + +++
Sbjct: 343 LERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDA 402
Query: 345 LSSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLLKNN 404
L ILTP S+D+L ++ ++ PYV VGVNGVGKSTNL+K+A+WL ++
Sbjct: 403 LVRILTPRRSIDILRDVHAAKEQRK------PYVVVFVGVNGVGKSTNLAKVAYWLQQHK 456
Query: 405 LKVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGYGGS 464
+ V++ ACDTFRSGAVEQLR H L + +FE GY
Sbjct: 457 VSVMMAACDTFRSGAVEQLRTHARRL----------------------QIPIFEKGYEKD 494
Query: 465 NLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGEALV 524
V +AK+AI+ A DVVL+DTAGR ++ LM L PD ++ VGEALV
Sbjct: 495 PAV--VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEALV 552
Query: 525 GTDSVQQAHNFNQAF------GKERNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIG 578
G D+V Q FNQ G R +D +++K DT+ + +G ++MVY + P++F+G
Sbjct: 553 GNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVG 612
Query: 579 VGQTYTDLRTLSVEWAVNSLL 599
GQ+YTDL+ L+V+ V +LL
Sbjct: 613 CGQSYTDLKKLNVKAIVKTLL 633
>ECU10g0170 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 425
Score = 198 bits (503), Expect = 2e-50
Identities = 121/317 (38%), Positives = 183/317 (57%), Gaps = 33/317 (10%)
Query: 287 EEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARESLQKCLS 346
E D+ + D + LISKNV+ ++ L + +L + ++ + ++T +E + LS
Sbjct: 138 EIDVNELKDKMTTHLISKNVSYQITKTLVEDIMSELAEEEIKSVS--EKTFKEKMANVLS 195
Query: 347 SILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLLKNNLK 406
++ PSV + E+ RI G + VGVNGVGKST+L+K+ +WLL+N L+
Sbjct: 196 KLI-PSVDHE---EMLDRIR-----GHKGVFSICFVGVNGVGKSTSLAKICYWLLQNKLR 246
Query: 407 VLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGYGGSNL 466
V I ACDTFR+GA+EQL+ HVE R K G V +E GYG +
Sbjct: 247 VYIAACDTFRAGAIEQLKTHVE-----------------RFKLGGHLVGFYEKGYGKDD- 288
Query: 467 VTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGEALVGT 526
+A+ AI+ A+ E +DV+L+DTAGR HN LM+ L + PD II VGEALVG+
Sbjct: 289 -ASVARCAIQEAQHEGYDVILIDTAGRMHNKKNLMASLTKLMKINRPDHIIYVGEALVGS 347
Query: 527 DSVQQAHNFNQAF---GKERNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVGQTY 583
DS+ FN+A + R +D +++K DTV + +G ++NM +++ PILF+GVGQ+
Sbjct: 348 DSLDHIREFNKAIRDADQSRKIDSILLTKVDTVDDRIGQILNMAFSSHAPILFLGVGQSN 407
Query: 584 TDLRTLSVEWAVNSLLS 600
+DL + E V+SL+S
Sbjct: 408 SDLSKIGSEDIVSSLMS 424
>At2g45770 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 373
Score = 120 bits (301), Expect = 6e-27
Identities = 99/353 (28%), Positives = 156/353 (44%), Gaps = 49/353 (13%)
Query: 261 KSKAKPTTSSPFSFLQKHILGNKTISE-------EDLKTVLDSLKQKLISKNVAPEVADH 313
K KAK FS K I E + VLD L++ L+ + P++
Sbjct: 57 KEKAKSDVEKVFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVR 116
Query: 314 LCNQVSKDLIGSKTENWTSVDQTARESLQKCLSSILTPSVSVDLLHEIQKRINKKDSSGL 373
+ ++ +D++ K ++ + + E + S+L + E+Q G
Sbjct: 117 IVERLREDIMSGKLKSGSEIKVDLNEIVDALKESVLEMLAKKNSKTELQL--------GF 168
Query: 374 NDPYVFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQL 433
P V +VGVNG GK+T+L KLA L KVL+ A DTFR+ A +QL + E
Sbjct: 169 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAE----- 223
Query: 434 TDHNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGR 493
+TG E V G + +A+K K E +DVVL DT+GR
Sbjct: 224 --------------RTGCEIVV----AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGR 265
Query: 494 RHNDATLMSPLKSFAEQAN------PDKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDF 547
H + +LM L + + P++I++V + G + + QA FN+ G +
Sbjct: 266 LHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVG----ITG 321
Query: 548 FIISKCDTVGELLGTMVNMVYATSIPILFIGVGQTYTDLRTLSVEWAVNSLLS 600
I++K D G +V++V IP+ FIGVG+ DL+ E VN++ S
Sbjct: 322 LILTKLDGSAR-GGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 373
>CE10018 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 450
Score = 102 bits (254), Expect = 2e-21
Identities = 82/270 (30%), Positives = 131/270 (48%), Gaps = 33/270 (12%)
Query: 145 DEMKKTSQQKGKKHTANYNK---QVPVSAANKGKQSSKGKKENSQIKARKWGRDGLLE-- 199
+E+ + Q KK + N K + P S KGKQ+ + R E
Sbjct: 204 EEVLRRRDQMFKKMSGNTKKKGPEEPTSPKPKGKQARVWALSGKPADVKNLDRSDPKEND 263
Query: 200 ETAAMDESLDFSEGNRTASPPIAIGSDLESDMRNGSQFGKQNDKGEFLINEIDELLASNK 259
E AA +E F E + IG+ L+ D+++ + E D+ +
Sbjct: 264 ENAADEEKNRFVESMKEQ-----IGT-LKGDLKS--------------LQESDDEDEDDN 303
Query: 260 EKSKAKPTTSSPFSFLQKHILGNKTISEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVS 319
++ K + FS + K ++G K +S EDL +++ +++ LI KNVA E A+ +C V
Sbjct: 304 DQQVVKQS-GGWFSMI-KGLVGEKKLSAEDLNPLIEKMRENLILKNVASEPAEKICQSVV 361
Query: 320 KDLIGSKTENWTSVDQTARESLQKCLSSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVF 379
L G N++ V Q + ++++ L +LTP VD+L ++ + K+D PYV
Sbjct: 362 SKLEGKVVNNFSRVAQEVKTAVRESLVQLLTPKHRVDILRDVIEA--KRDGR----PYVI 415
Query: 380 SVVGVNGVGKSTNLSKLAFWLLKNNLKVLI 409
GVNGVGKSTNL+K+ FWL +N +VLI
Sbjct: 416 VFCGVNGVGKSTNLAKITFWLTENKHRVLI 445
>SPCC188.06c [U] KOG0780 Signal recognition particle subunit Srp54
Length = 522
Score = 100 bits (249), Expect = 6e-21
Identities = 86/316 (27%), Positives = 149/316 (46%), Gaps = 42/316 (13%)
Query: 284 TISEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARESLQK 343
+++EE + T+L ++ L+ +V + L + + K + S + + ++++
Sbjct: 22 SVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFD 81
Query: 344 CLSSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLLKN 403
L S++ P V D + R P V +VG+ G GK+T SKLA +
Sbjct: 82 ELCSLVDPKV--DAFTPKKGR-----------PSVIMMVGLQGSGKTTTCSKLALHYQRR 128
Query: 404 NLKVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGYGG 463
LK +VA DTFR+GA +QL+ N ++ V F G Y
Sbjct: 129 GLKSCLVAADTFRAGAFDQLK-----------QNAIKAR-----------VPYF-GSYTE 165
Query: 464 SNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGEAL 523
++ V IAK+ + K + FDV+++DT+GR + L + + ++ PD+ IM+ +A
Sbjct: 166 TDPVV-IAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDAS 224
Query: 524 VGTDSVQQAHNFNQAFGKERNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVGQTY 583
+G Q A + ++AF + + II+K D + G ++ V AT PI+FIG G+
Sbjct: 225 IG----QAAESQSKAFKETADFGAVIITKLDGHAK-GGGALSAVAATKTPIVFIGTGEHI 279
Query: 584 TDLRTLSVEWAVNSLL 599
DL S ++ LL
Sbjct: 280 NDLERFSPRSFISKLL 295
>YPR088c [U] KOG0780 Signal recognition particle subunit Srp54
Length = 541
Score = 100 bits (248), Expect = 8e-21
Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 39/318 (12%)
Query: 286 SEEDLKTVLDSLKQKLISKNVAPEV----ADHLCNQVSKDLIGSKTENWTSVDQTARESL 341
+++D T +D + + +++ + +V L N + L+ ++ + ++ +
Sbjct: 21 TQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLI 80
Query: 342 QKCLSSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLL 401
QK + L V+ + E + + KK + + VG+ G GK+T+ +KLA +
Sbjct: 81 QKTVFDELCKLVTCEGSEE-KAFVPKKRKTN-----IIMFVGLQGSGKTTSCTKLAVYYS 134
Query: 402 KNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGY 461
K KV +V DTFR+GA +QL+ N +R F G Y
Sbjct: 135 KRGFKVGLVCADTFRAGAFDQLK-----------QNAIRARIP------------FYGSY 171
Query: 462 GGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGE 521
++ K+A++ I K E FD++++DT+GR H + L + + P++ IMV +
Sbjct: 172 TETD-PAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLD 230
Query: 522 ALVGTDSVQQAHNFNQAFGKERNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVGQ 581
A +G + QQ ++AF + + I++K D G ++ V AT+ PI+FIG G+
Sbjct: 231 ASIGQAAEQQ----SKAFKESSDFGAIILTKMDGHAR-GGGAISAVAATNTPIIFIGTGE 285
Query: 582 TYTDLRTLSVEWAVNSLL 599
DL S + ++ LL
Sbjct: 286 HIHDLEKFSPKSFISKLL 303
>At1g48900 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 522
Score = 94.4 bits (233), Expect = 5e-19
Identities = 68/229 (29%), Positives = 113/229 (48%), Gaps = 16/229 (6%)
Query: 378 VFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLA------ 431
V VG+ G GK+T +K A++ K K +V DTFR+GA +QL+ +
Sbjct: 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGR 162
Query: 432 -QLTDHNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDT 490
L + H+ G K +T Y+ L + + KIA + + K E+ D++++DT
Sbjct: 163 FGLGQYLHISGLK----RTSVTYMFLCPIIHYTESDPVKIAVEGVDTFKKENCDLIIVDT 218
Query: 491 AGRRHNDATLMSPLKSFAEQANPDKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFFII 550
+GR +A+L ++ AE PD +I V ++ +G + QA QAF + + II
Sbjct: 219 SGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQA----QAFKQSVAVGAVII 274
Query: 551 SKCDTVGELLGTMVNMVYATSIPILFIGVGQTYTDLRTLSVEWAVNSLL 599
+K D + G ++ V AT P++FIG G+ + V+ V+ LL
Sbjct: 275 TKMDGHAK-GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 322
>At1g15310 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 479
Score = 91.7 bits (226), Expect = 3e-18
Identities = 67/224 (29%), Positives = 110/224 (48%), Gaps = 29/224 (12%)
Query: 376 PYVFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTD 435
P V VG+ G GK+T +K A++ K K +V DTFR+GA +QL+ + A++
Sbjct: 101 PSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATK-AKIP- 158
Query: 436 HNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRH 495
F G Y S+ V KIA + + K E D++++DT+GR
Sbjct: 159 ---------------------FYGSYTESDPV-KIAVEGVDRFKKEKCDLIIVDTSGRHK 196
Query: 496 NDATLMSPLKSFAEQANPDKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFFIISKCDT 555
A+L ++ AE PD +I V ++ +G + +QA +AF + ++ II+K D
Sbjct: 197 QAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQA----EAFKETVSVGAVIITKMDG 252
Query: 556 VGELLGTMVNMVYATSIPILFIGVGQTYTDLRTLSVEWAVNSLL 599
+ G ++ V AT P++FIG G+ + V+ V+ LL
Sbjct: 253 HAK-GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
>ECU04g0980 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 466
Score = 89.4 bits (220), Expect = 1e-17
Identities = 76/315 (24%), Positives = 139/315 (44%), Gaps = 45/315 (14%)
Query: 286 SEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARESLQKCL 345
+++ ++T + + LI NV P L +++ L K + + + ++ + L
Sbjct: 22 TDQHIETAIREICNSLILSNVNPRYVSDLRDELRAKLDPGKMAPGFNKARMVQNAVYERL 81
Query: 346 SSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWLLKNNL 405
+L P ++I+K G VF VG+ G GK+T++ K A + K
Sbjct: 82 VDLLDPRTES---YKIEK--------GRTSVVVF--VGLQGSGKTTSICKYANFYKKKGY 128
Query: 406 KVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGGYGGSN 465
KV IV DTFR+GA +Q+R + +++ +G S
Sbjct: 129 KVGIVCADTFRAGAFDQVRQNA--------------------------LKIKVPFFGSSE 162
Query: 466 L-VTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVGEALV 524
K+A ++ + E F+++L+DT+GR + L + +K + +P I+ V +A +
Sbjct: 163 ADPVKVASAGVERFRKERFELILVDTSGRHTQETELFTEMKDIIREISPSSIVFVMDAGI 222
Query: 525 GTDSVQQAHNFNQAFGKERNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVGQTYT 584
G + QA F +A ++ I++K D + G ++ V AT PI F+G G+
Sbjct: 223 GQSAEDQAMGFKRAV----DVGSIILTKIDGTTK-AGGAISSVAATKCPIEFVGTGEGMD 277
Query: 585 DLRTLSVEWAVNSLL 599
DL V+ +L
Sbjct: 278 DLEAFDARRFVSRML 292
>CE09524 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 496
Score = 88.2 bits (217), Expect = 3e-17
Identities = 83/326 (25%), Positives = 142/326 (43%), Gaps = 53/326 (16%)
Query: 280 LGNKT-ISEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSK-----DLIGSKTENWTSV 333
LG T I+E +L +L + LI +V + L + V K +++G + +
Sbjct: 17 LGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAINFEEIVGGANKR-RYI 75
Query: 334 DQTARESLQKCLSSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNL 393
+T L K + +TP + R N VF VG+ G GK+T
Sbjct: 76 QKTVFNELLKLVDPGVTPFTPT------KGRRN-----------VFMFVGLQGSGKTTTC 118
Query: 394 SKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEY 453
+K+A++ + K ++ DTFR+GA +QL+ + TK R
Sbjct: 119 TKMAYYYQRKGWKTCLICADTFRAGAFDQLKQNA--------------TKARIP------ 158
Query: 454 VELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANP 513
F G Y + V KIA + ++ E F+++++DT+GR +A+L + + P
Sbjct: 159 ---FYGSYSEIDPV-KIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEEMLQVSNAVTP 214
Query: 514 DKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFFIISKCDTVGELLGTMVNMVYATSIP 573
D ++ V +A +G QA F+Q ++ II+K D+ + G ++ V T P
Sbjct: 215 DNVVFVMDASIGQACEAQARAFSQTV----DVASVIITKLDSHAK-GGGALSAVAVTKSP 269
Query: 574 ILFIGVGQTYTDLRTLSVEWAVNSLL 599
++FIG G+ D + V LL
Sbjct: 270 VIFIGTGEHIDDFEIFKPKSFVQKLL 295
>7295492 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 508
Score = 87.4 bits (215), Expect = 6e-17
Identities = 86/323 (26%), Positives = 143/323 (43%), Gaps = 43/323 (13%)
Query: 278 HILGNKT-ISEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQT 336
H L T I+EE L ++L + L+ +V + L V + + + +
Sbjct: 15 HSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEMAGGLNKRRM 74
Query: 337 ARESLQKCLSSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKL 396
+ ++ K L ++ P V I+ + N V VG+ G GK+T +KL
Sbjct: 75 IQSAVFKELVKLVDPGVKP--YQPIKGKAN-----------VVMFVGLQGSGKTTTCTKL 121
Query: 397 AFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVEL 456
A+ K N K +V DTFR+GA +Q++ + TK R
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQVKQN--------------ATKARIP--------- 158
Query: 457 FEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKI 516
F G Y + V IA+ + K E F+++++DT+GR + +L + + + +PD I
Sbjct: 159 FYGSYTEIDPVV-IAQDGVDMFKREGFEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNI 217
Query: 517 IMVGEALVGTDSVQQAHNFNQAFGKERNLDFFIISKCDTVGELLGTMVNMVYATSIPILF 576
I V +A +G QA +AF + ++ II+K D + G ++ V AT PI+F
Sbjct: 218 IFVMDATIGQACEAQA----KAFKDKVDIGSVIITKLDGHAK-GGGALSAVAATQSPIIF 272
Query: 577 IGVGQTYTDLRTLSVEWAVNSLL 599
IG G+ DL + V+ LL
Sbjct: 273 IGTGEHIDDLEPFKTKPFVSKLL 295
>Hs4507215 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 504
Score = 87.0 bits (214), Expect = 7e-17
Identities = 64/222 (28%), Positives = 106/222 (46%), Gaps = 29/222 (13%)
Query: 378 VFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTDHN 437
V VG+ G GK+T SKLA++ + K ++ DTFR+GA +QL+ +
Sbjct: 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQN----------- 151
Query: 438 HVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHND 497
TK R F G Y + V IA + ++ K E+F+++++DT+GR +
Sbjct: 152 ---ATKARIP---------FYGSYTEMDPVI-IASEGVEKFKNENFEIIIVDTSGRHKQE 198
Query: 498 ATLMSPLKSFAEQANPDKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFFIISKCDTVG 557
+L + A PD I+ V +A +G QA +AF + ++ I++K D
Sbjct: 199 DSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA----KAFKDKVDVASVIVTKLDGHA 254
Query: 558 ELLGTMVNMVYATSIPILFIGVGQTYTDLRTLSVEWAVNSLL 599
+ G ++ V AT PI+FIG G+ D + ++ LL
Sbjct: 255 K-GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295
>At5g03940 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 564
Score = 84.3 bits (207), Expect = 5e-16
Identities = 74/306 (24%), Positives = 132/306 (42%), Gaps = 42/306 (13%)
Query: 281 GNKTISEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKTENWTSVDQTARES 340
G + ++++++ + +++ L+ +V+ V VS +G DQ +
Sbjct: 94 GEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKI 153
Query: 341 LQKCLSSILTPSVSVDLLHEIQKRINKKDSSGLNDPYVFSVVGVNGVGKSTNLSKLAFWL 400
+ L ++ VS E+Q + P V + G+ GVGK+T +KLA +L
Sbjct: 154 VHDELVKLMGGEVS-----ELQ--------FAKSGPTVILLAGLQGVGKTTVCAKLACYL 200
Query: 401 LKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRRGKTGNEYVELFEGG 460
K +++A D +R A++QL + E + V ++ G
Sbjct: 201 KKQGKSCMLIAGDVYRPAAIDQLVILGEQVG----------------------VPVYTAG 238
Query: 461 YGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATLMSPLKSFAEQANPDKIIMVG 520
IAKQ +K AK + DVV+MDTAGR D +M LK + NP ++++V
Sbjct: 239 TDVKP--ADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVV 296
Query: 521 EALVGTDSVQQAHNFNQAFGKERNLDFFIISKCDTVGELLGTMVNMVYATSIPILFIGVG 580
+A+ G ++ FN G + I++K D G +++ + PI +G G
Sbjct: 297 DAMTGQEAAALVTTFNVEIG----ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRG 351
Query: 581 QTYTDL 586
+ DL
Sbjct: 352 ERMEDL 357
>CE28419 [U] KOG0781 Signal recognition particle receptor alpha subunit
Length = 114
Score = 84.0 bits (206), Expect = 6e-16
Identities = 45/108 (41%), Positives = 64/108 (58%), Gaps = 7/108 (6%)
Query: 500 LMSPLKSFAEQANPDKIIMVGEALVGTDSVQQAHNFNQAFG-------KERNLDFFIISK 552
LM L PD ++ VGEALVG ++V Q FN+A K R +D +++K
Sbjct: 7 LMRELAKLIRVNEPDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRLIDGIVLTK 66
Query: 553 CDTVGELLGTMVNMVYATSIPILFIGVGQTYTDLRTLSVEWAVNSLLS 600
DT+ + +G V+M Y T PI+F+G GQTY+DLR L+V V+SLL+
Sbjct: 67 FDTIDDKVGAAVSMTYITGQPIVFVGCGQTYSDLRNLNVGAVVHSLLN 114
>At5g49500 [U] KOG0780 Signal recognition particle subunit Srp54
Length = 497
Score = 78.6 bits (192), Expect = 3e-14
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 31/226 (13%)
Query: 376 PYVFSVVGVNG--VGKSTNLSKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQL 433
P V VG+ G + K + + + + K +V DTFR+GA +QL+ +
Sbjct: 101 PSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNA------ 154
Query: 434 TDHNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGR 493
TK++ + G Y GS+ V KIA + + K E+ D++++DT+GR
Sbjct: 155 --------TKSKIP---------YYGSYTGSDPV-KIAVEGVDRFKKENCDLIIVDTSGR 196
Query: 494 RHNDATLMSPLKSFAEQANPDKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFFIISKC 553
A+L ++ +E PD +I V ++ +G + +QA F Q + II+K
Sbjct: 197 HKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVA----VGAVIITKM 252
Query: 554 DTVGELLGTMVNMVYATSIPILFIGVGQTYTDLRTLSVEWAVNSLL 599
D + GT+ + V AT P++FIG G+ + + V+ LL
Sbjct: 253 DGHAKGGGTL-SAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLL 297
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,185,829
Number of Sequences: 60738
Number of extensions: 1447862
Number of successful extensions: 4364
Number of sequences better than 1.0e-05: 20
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4300
Number of HSP's gapped (non-prelim): 26
length of query: 600
length of database: 30,389,216
effective HSP length: 112
effective length of query: 488
effective length of database: 23,586,560
effective search space: 11510241280
effective search space used: 11510241280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)