ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2706 good J KOG1614 Translation, ribosomal structure and biogenesis Exosomal 3'-5' exoribonuclease complex, subunit Rrp45
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2706 954057 954971 305
(305 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR280w [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subun... 501 e-142
SPCC757.08 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex su... 294 9e-80
CE26424 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subun... 191 1e-48
At3g12990 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex sub... 191 1e-48
At3g60500 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex sub... 188 7e-48
7293284 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subun... 147 1e-35
Hs4826922 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex sub... 145 9e-35
Hs22051959 [J] KOG1613 Exosomal 3'-5' exoribonuclease complex su... 117 2e-26
Hs18545020 [J] KOG1612 Exosomal 3'-5' exoribonuclease complex su... 91 2e-18
SPBC17D1.03c [J] KOG1613 Exosomal 3'-5' exoribonuclease complex ... 90 5e-18
At1g60080 [J] KOG1613 Exosomal 3'-5' exoribonuclease complex sub... 86 5e-17
At3g07750 [J] KOG1612 Exosomal 3'-5' exoribonuclease complex sub... 74 2e-13
7303006 [J] KOG1612 Exosomal 3'-5' exoribonuclease complex subun... 71 2e-12
>YDR280w [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subunit Rrp45
Length = 305
Score = 501 bits (1290), Expect = e-142
Identities = 240/304 (78%), Positives = 280/304 (91%)
Query: 1 MAKDIEISNAESKFILEALKLKQRLDGRSYDQFRDVKIEIGEAYGDVTVTMGNTKVHCRI 60
MAKDIEIS +ESKFILEAL+ RLDGRS+DQFRDV+I G+ +GDV+V MGNTKVHCRI
Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRI 60
Query: 61 SCEIAQPYEDRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDV 120
SC+IAQPYEDRPFEGLF ISTE +PMAG+QFENGN TGE+EVL SR+IEK+VRRSGALDV
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 121 EGLCIIAGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPID 180
EGLCI+AGSKCW++RADVHFLDCDGG IDASCIAVMAGL+HFKKPD+TV GE++ VHP++
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVN 180
Query: 181 EREPVSLGVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLN 240
EREPV LG+LH+PICVTFSFFNP DTEENIKGE N+EISIIDA+LKEELLRDGVLTVTLN
Sbjct: 181 EREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLN 240
Query: 241 KNREVVQISKAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVKQDTIARNQYAHILSSE 300
KNREVVQ+SKAGGLPM+AL+L+ CCH+AY I+EKITDQI +++K+D+ RN+YA +L+SE
Sbjct: 241 KNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNKYAAMLTSE 300
Query: 301 NARE 304
NARE
Sbjct: 301 NARE 304
>SPCC757.08 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subunit Rrp45
Length = 291
Score = 294 bits (753), Expect = 9e-80
Identities = 147/303 (48%), Positives = 208/303 (68%), Gaps = 13/303 (4%)
Query: 1 MAKDIEISNAESKFILEALKLKQRLDGRSYDQFRDVKIEIGEAYGDVTVTMGNTKVHCRI 60
M++ +E S +F+L +L+ RLDGR FR ++I+ G+ YG V V+ G+T+V RI
Sbjct: 1 MSRHLETSLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARI 60
Query: 61 SCEIAQPYEDRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDV 120
+ EI +PY DRPF+G+F I+TE TP+A + FE G ++E++ISR+IEKAVRRS ALD
Sbjct: 61 TTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGR-VSDQEIVISRLIEKAVRRSNALDT 119
Query: 121 EGLCIIAGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPID 180
E LCII+G KCW +RA VHF++ DG L+DA+CIAV+A L HF++P++TV+GE VTVHP++
Sbjct: 120 ESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVE 179
Query: 181 EREPVSLGVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLN 240
ER PV L +LH+PICVTFSFFN N E++I+DA+L+EE L +G +T+TLN
Sbjct: 180 ERVPVPLSILHMPICVTFSFFN------------NGELAIVDATLEEEDLCNGSMTITLN 227
Query: 241 KNREVVQISKAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVKQDTIARNQYAHILSSE 300
KNREV QI KAGG+ ++ +I C A+ I + I + + +D + S+E
Sbjct: 228 KNREVCQIYKAGGIIIDPSKIISCAKTAFDIAVSVCSVIQQALDEDLRKKETQYLGGSAE 287
Query: 301 NAR 303
N R
Sbjct: 288 NER 290
>CE26424 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subunit Rrp45
Length = 434
Score = 191 bits (485), Expect = 1e-48
Identities = 103/287 (35%), Positives = 157/287 (53%), Gaps = 13/287 (4%)
Query: 7 ISNAESKFILEALKLKQRLDGRSYDQFRDVKIEIGEAYGDVTVTMGNTKVHCRISCEIAQ 66
++N E ILEALK+ +R D RS ++FRDVK+ +G G T+GNTKV +S EIA+
Sbjct: 6 VTNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTKVMAAVSAEIAE 65
Query: 67 PYEDRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCII 126
P RP +G+ +I + +PMA E+ + G + + + R++E +R S +DVE LCI
Sbjct: 66 PSSMRPHKGVINIDVDLSPMANYANEH-DRLGSKGMELIRLLELIIRDSRCIDVEALCIR 124
Query: 127 AGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPIDEREPVS 186
AG + W +R DV LD DG L+D +C+A + L HF++P+VT+ ++ E+ PV
Sbjct: 125 AGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEKAPVP 184
Query: 187 LGVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREVV 246
L + H+PIC T D +I +ID + KE DG + V NK REV
Sbjct: 185 LNIYHMPICTTIGLL------------DKGQIVVIDPTDKETACLDGSIVVACNKRREVC 232
Query: 247 QISKAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVKQDTIARNQY 293
+ ++ L + + C A E +T + V+KQD I R+ +
Sbjct: 233 ALHQSTNLILSTKQIERCVKLAMARAEALTAVVSDVIKQDQIERSAF 279
>At3g12990 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subunit Rrp45
Length = 307
Score = 191 bits (484), Expect = 1e-48
Identities = 106/277 (38%), Positives = 157/277 (56%), Gaps = 16/277 (5%)
Query: 11 ESKFILEALKLKQRLDGRSYDQFRDVKIEIGEAYGDVTVTMGNTKVHCRISCEIAQPYED 70
ESKF+ AL+ + R+DGR +R + I+ G+ YG V +G T V ++ ++ QPY+D
Sbjct: 15 ESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAFVTAQLVQPYKD 74
Query: 71 RPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGSK 130
RP EG F I TE +PMA FE G+ GE V + R+I++A+R S A+D E LC++AG
Sbjct: 75 RPSEGSFSIFTEFSPMADPSFEPGH-PGESAVELGRIIDRALRESRAVDTESLCVLAGKL 133
Query: 131 CWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGER---VTVHPIDEREPVSL 187
WS+R D+H LD G L+DA+ +A +A L+ F++PD TV G+ V +HP +EREP+ L
Sbjct: 134 VWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPL 193
Query: 188 GVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREVVQ 247
+ H+PI TF FFN I ++D + EE + G +TVT+N N ++
Sbjct: 194 IIHHLPIAFTFGFFN------------KGSILVMDPTYVEEAVMCGRMTVTVNANGDICA 241
Query: 248 ISKAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVK 284
I K G + ++ C A T I V+
Sbjct: 242 IQKPGEEGVNQSVILHCLRLASSRASATTKIIRDAVE 278
>At3g60500 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subunit Rrp45
Length = 438
Score = 188 bits (478), Expect = 7e-48
Identities = 106/284 (37%), Positives = 160/284 (56%), Gaps = 20/284 (7%)
Query: 11 ESKFILEALKLKQRLDGRSYDQFRDVKIEIGEAYGDVTVTMGNTKVHCRISCEIAQPYED 70
ESKF+ AL+ + R+DGR +R + I+ G+ YG V +G T V ++ ++ QPY+D
Sbjct: 15 ESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGFVTAQLVQPYKD 74
Query: 71 RPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGSK 130
RP EG I TE +PMA FE G GE V + R+I++ +R S A+D E LC++AG
Sbjct: 75 RPNEGSLSIFTEFSPMADPSFEPGR-PGESAVELGRIIDRGLRESRAVDTESLCVLAGKM 133
Query: 131 CWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGE---RVTVHPIDEREPVSL 187
WS+R D+H LD G L+DA+ IA +A L+ F++PD TV GE V +HP++EREP+ L
Sbjct: 134 VWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPL 193
Query: 188 GVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREVVQ 247
+ H+PI TF FFN I ++D + EE + G +TVT+N N ++
Sbjct: 194 IIHHLPIAFTFGFFN------------KGNIVVMDPTYVEEAVMCGRMTVTVNANGDICA 241
Query: 248 ISKAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVKQDTIARN 291
I K G + ++ C A T ++++++ A N
Sbjct: 242 IQKPGEEGVNQSVILHCLRLASSRAAATT----KIIREEVEAYN 281
>7293284 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subunit Rrp45
Length = 466
Score = 147 bits (372), Expect = 1e-35
Identities = 85/287 (29%), Positives = 150/287 (51%), Gaps = 17/287 (5%)
Query: 8 SNAESKFILEALKLKQRLDGRSYDQFRDVKIEIGEAYGDVTVTMGNTKVHCRISCEIAQP 67
S E F+ A+K QRLDGR ++ RDV++ G+ +G V V+MG+TKV +++CE+ P
Sbjct: 67 SKPERSFVQLAVKQNQRLDGRRSNESRDVELTFGKDWGSVAVSMGDTKVLAQVTCEMGPP 126
Query: 68 YEDRPFEGLFHISTETTPMAGAQFENGNNTGEEE--VLISRMIEKAVRRSGALDVEGLCI 125
RP EG H++ + G F + +T ++ + ++ ++E+ R S ++D+E LC+
Sbjct: 127 ALSRPNEGKIHLNVY---LGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCV 183
Query: 126 IAGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPIDEREPV 185
W +R +V+ L+ DG L DAS IA +A L+HF++PDV + + ERE +
Sbjct: 184 AVEKHVWCIRVNVNVLNHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFI 243
Query: 186 SLGVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREV 245
L H P+ VT+ + ++ I+D +L EE D V+ ++ N +E+
Sbjct: 244 PLLFHHYPVSVTYCVYK------------SSVQPILDPTLLEENAADSVIVLSFNSFQEL 291
Query: 246 VQISKAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVKQDTIARNQ 292
++ G P A ++ C A + + + + + + D R+Q
Sbjct: 292 CSLTAGGTAPTNARIIMQCARNAAVRCKSLLNFVRKALALDEECRSQ 338
>Hs4826922 [J] KOG1614 Exosomal 3'-5' exoribonuclease complex subunit Rrp45
Length = 355
Score = 145 bits (365), Expect = 9e-35
Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 13/207 (6%)
Query: 86 MAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGSKCWSLRADVHFLDCDG 145
MA FE G + + V ++R++E+ +R S +D E LC++AG K W +R D+H L+ DG
Sbjct: 1 MAAPAFEPGRQS-DLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDG 59
Query: 146 GLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPIDEREPVSLGVLHVPICVTFSFFNPDD 205
+IDA+ IA + L HF++PDV+V G+ VT++ +ER+PV L + H+PICV+F+FF
Sbjct: 60 NIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFF---- 115
Query: 206 TEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREVVQISKAGGLPMEALSLIDCC 265
++D + +EE + DG+L + +NK+RE+ I +GG+ + ++ C
Sbjct: 116 --------QQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCS 167
Query: 266 HKAYGIVEKITDQIHRVVKQDTIARNQ 292
A V +IT+ I + ++ D R +
Sbjct: 168 KIAGVKVAEITELILKALENDQKVRKE 194
>Hs22051959 [J] KOG1613 Exosomal 3'-5' exoribonuclease complex subunit Rrp43
Length = 276
Score = 117 bits (294), Expect = 2e-26
Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 21/272 (7%)
Query: 19 LKLKQRLDGRSYDQFRDVKIEIGE---AYGDVTVTMGNTKVHCRISCEIAQPYEDRPFEG 75
LK R DGR +FR + IG A G V +GNT V C + E A P D P +G
Sbjct: 18 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG 77
Query: 76 LFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGSKCWSLR 135
+ + P+ ++F +G GEE + S+ I + S + E LCI G W L
Sbjct: 78 YVVPNVDLPPLCSSRFRSGP-PGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136
Query: 136 ADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPIDEREPVSLGVLHVPIC 195
D+ LD DG ++DA A++A L + + P+VT+ E + ++ ++ L + P+
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEVTI-NEETALAEVNLKKKSYLNIRTHPVA 195
Query: 196 VTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNREVVQISKAGGLP 255
+F+ F DDT + I+D + +EE L G LT+ +++ ++ + K GG
Sbjct: 196 TSFAVF--DDT-----------LLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSG 242
Query: 256 MEALSLIDCCHKA---YGIVEKITDQIHRVVK 284
+ L DC +A + V+K+ D++ + +K
Sbjct: 243 LTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274
>Hs18545020 [J] KOG1612 Exosomal 3'-5' exoribonuclease complex subunit Rrp42
Length = 291
Score = 91.3 bits (225), Expect = 2e-18
Identities = 72/291 (24%), Positives = 127/291 (42%), Gaps = 26/291 (8%)
Query: 5 IEISNAESKFILEALKLKQRLDGRSYDQFRDVKIE---IGEAYGDVTVTMGNTKVHCRIS 61
+ +S AE +I+ ++ R+DGR + +R V++E + G V +G+T + +
Sbjct: 4 VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63
Query: 62 CEIAQPYEDRPFEGLFHISTETTPMAGAQFEN--GNNTGEEEVLISRMIEKAVRRSGALD 119
E+ P ++P EG + + A +FE G++ G E I+ + + ++D
Sbjct: 64 AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTE---IANTLYRIFNNKSSVD 120
Query: 120 VEGLCIIAGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPI 179
++ LCI CW L DV L+C G L DA IAV A L + + P V VL + I
Sbjct: 121 LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDI 180
Query: 180 ----DEREPVSLGVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVL 235
D + + L V +VP VT ++DA+L+EE L
Sbjct: 181 ELSDDPYDCIRLSVENVPCIVTLCKI--------------GYRHVVDATLQEEACSLASL 226
Query: 236 TVTLNKNREVVQISKAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVKQD 286
V++ V + K G ++ S+ + + + + + VV ++
Sbjct: 227 LVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKE 277
>SPBC17D1.03c [J] KOG1613 Exosomal 3'-5' exoribonuclease complex subunit Rrp43
Length = 270
Score = 89.7 bits (221), Expect = 5e-18
Identities = 71/264 (26%), Positives = 119/264 (44%), Gaps = 29/264 (10%)
Query: 13 KFILEALKLKQRLDGRSYDQFRDVKIE---IGEAYGDVTVTMGNTKVHCRISCEIAQPYE 69
+++ L R DGRS +FR++ I I A G + G C I EIA+P+E
Sbjct: 24 QYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPFE 83
Query: 70 DRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGS 129
+ P EG + E +P+ ++F+ G + +V +S+ + + +++S ++++ LCI
Sbjct: 84 NSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQV-VSQELHQTLQQSNLINLQSLCIFEKK 142
Query: 130 KCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGERVTVHPIDEREPVSLGV 189
W L AD+ L+ DG D + A+ A L K P V D +
Sbjct: 143 AAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLP--------TAVWDEDLERVICAST 194
Query: 190 LHVPICV-----TFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTVTLNKNRE 244
L P+ + +FS+ DD + D + +EE L LT+ LN ++
Sbjct: 195 LTRPVQLSTEVRSFSWSVFDDK------------LLADPTDEEEDLSTEFLTIMLNSSKN 242
Query: 245 VVQISKAGGLPMEALSLIDCCHKA 268
+V+I K GG ++ L L C A
Sbjct: 243 IVKIIKLGGTHIQPLLLKKCIEVA 266
>At1g60080 [J] KOG1613 Exosomal 3'-5' exoribonuclease complex subunit Rrp43
Length = 302
Score = 86.3 bits (212), Expect = 5e-17
Identities = 67/271 (24%), Positives = 113/271 (40%), Gaps = 33/271 (12%)
Query: 13 KFILEALKLKQRLDGRSYDQFRDVKIEIG---EAYGDVTVTMGNTKVHCRISCEIAQPYE 69
+F L R DGR + RD + +G A G +G+T + I E+ P
Sbjct: 26 RFFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPST 85
Query: 70 DRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGS 129
D P EG I P+ G E +IS+ + + SG +D++ LC+++G
Sbjct: 86 DSPDEGCIAIEFHMPPICSPTVRPGR-PAEAAPVISKRLSDTILSSGMIDLKELCLVSGK 144
Query: 130 KCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKP---------DVTVLGER------V 174
W D++ LD DG L DA+ +A +A + + P V V GE+ +
Sbjct: 145 AAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALI 204
Query: 175 TVHPIDEREPVSLGVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGV 234
T +E L + ++P +T + + D + +EE + D +
Sbjct: 205 TEKEAVNKEKRKLTLKNIPFSLTCIL--------------HKNYILADPTTEEESIMDTL 250
Query: 235 LTVTLNKNREVVQISKAGGLPMEALSLIDCC 265
+TV L+ + ++V K+GG + S I C
Sbjct: 251 VTVVLDSSDQMVSFYKSGGAALAYSSAIKSC 281
>At3g07750 [J] KOG1612 Exosomal 3'-5' exoribonuclease complex subunit Rrp42
Length = 293
Score = 74.3 bits (181), Expect = 2e-13
Identities = 71/296 (23%), Positives = 120/296 (39%), Gaps = 42/296 (14%)
Query: 7 ISNAESKFILEALKLKQRLDGRSYDQFRDVKIEIG---EAYGDVTVTMGNTKVHCRISCE 63
+S E FI + R DGR +R + +E G +A G V +G T V + E
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 64 IAQPYEDRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRR------SGA 117
I +P +P +G + + +P A F G GEE +S + A++R SGA
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTF--GGRGGEE---LSSELALALQRCLLGGKSGA 117
Query: 118 ----------LDVEGLCIIAGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDV 167
+++ L I G CW L D + DG L+DA A+ A L + P V
Sbjct: 118 AIHVLVPGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKV 177
Query: 168 TVLGERVTVH----PIDEREPVSLGVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDA 223
V E I + E + VP+ VT + I+DA
Sbjct: 178 NVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTH--------------YIVDA 223
Query: 224 SLKEELLRDGVLTVTLNKNREVVQISKAGGLPMEALSLIDCCHKAYGIVEKITDQI 279
+ +EE +++++N+ + ++K G ++ ++D A + E + ++
Sbjct: 224 TAEEESQMSSAVSISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKL 279
>7303006 [J] KOG1612 Exosomal 3'-5' exoribonuclease complex subunit Rrp42
Length = 281
Score = 71.2 bits (173), Expect = 2e-12
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 10/182 (5%)
Query: 24 RLDGRSYDQFRDVKIEIG---EAYGDVTVTMGNTKVHCRISCEIAQPYEDRPFEGLFHIS 80
R DGRS +R + +E G A G + + NT + + EI P P G
Sbjct: 8 RCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLTPEFGKLEFF 67
Query: 81 TETTPMAGAQFEN-GNNTGEEEVLISRMIEKAVRRSGALDVEGLCIIAGSKCWSLRADVH 139
+ + A +FE G + +E+++S ++ A A + LC+I G +CW L D+
Sbjct: 68 VDCSANATPEFEGRGGSDLAQELILS--LQNAYESPLAFNYRTLCLIPGQQCWKLYIDIL 125
Query: 140 FLDCDGGLIDASCIAVMAGLLHFKKPDV--TVLGERVTVHPIDER--EPVSLGVLHVPIC 195
L+C G L DA +A A L + K P V T+L +T I + + +G+ VP+
Sbjct: 126 ILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIETVPLL 185
Query: 196 VT 197
VT
Sbjct: 186 VT 187
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,933,453
Number of Sequences: 60738
Number of extensions: 780316
Number of successful extensions: 1810
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 14
length of query: 305
length of database: 30,389,216
effective HSP length: 106
effective length of query: 199
effective length of database: 23,950,988
effective search space: 4766246612
effective search space used: 4766246612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)