ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2745 check: MH A KOG0347 RNA processing and modification RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2745 969457 967070 -796
(796 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR142w [A] KOG0347 RNA helicase 787 0.0
SPBC4F6.07c [A] KOG0347 RNA helicase 373 e-103
7302399 [A] KOG0347 RNA helicase 258 3e-68
Hs9966805 [A] KOG0347 RNA helicase 244 3e-64
At3g16840 [A] KOG0347 RNA helicase 244 5e-64
CE11190 [A] KOG0347 RNA helicase 239 1e-62
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 195 2e-49
YLL008w [A] KOG0338 ATP-dependent RNA helicase 176 1e-43
7304081 [A] KOG0338 ATP-dependent RNA helicase 176 2e-43
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 173 8e-43
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 172 2e-42
CE27030 [A] KOG0338 ATP-dependent RNA helicase 168 3e-41
YHR065c [A] KOG0330 ATP-dependent RNA helicase 166 2e-40
CE00337 [A] KOG0330 ATP-dependent RNA helicase 162 2e-39
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 161 3e-39
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 160 5e-39
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 160 7e-39
7298752 [A] KOG0330 ATP-dependent RNA helicase 159 2e-38
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 157 5e-38
YJL033w [A] KOG0343 RNA Helicase 157 6e-38
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 157 8e-38
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 156 1e-37
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 156 1e-37
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 153 9e-37
CE00839 [A] KOG0326 ATP-dependent RNA helicase 152 1e-36
Hs13514831 [A] KOG0343 RNA Helicase 151 3e-36
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 150 1e-35
ECU10g1680 [A] KOG0343 RNA Helicase 149 1e-35
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 149 2e-35
SPCC10H11.01 [A] KOG0334 RNA helicase 149 2e-35
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 148 3e-35
CE28369 [A] KOG0335 ATP-dependent RNA helicase 148 4e-35
CE24451 [A] KOG0335 ATP-dependent RNA helicase 148 4e-35
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 147 5e-35
7298204 [A] KOG0335 ATP-dependent RNA helicase 147 6e-35
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 147 8e-35
7296646 [A] KOG0331 ATP-dependent RNA helicase 147 8e-35
CE27553 [A] KOG0337 ATP-dependent RNA helicase 146 1e-34
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 146 1e-34
YHR169w [A] KOG0340 ATP-dependent RNA helicase 145 2e-34
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 145 3e-34
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 4e-34
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 144 4e-34
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 144 4e-34
Hs7662318 [A] KOG0334 RNA helicase 144 5e-34
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 144 7e-34
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 143 9e-34
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 143 9e-34
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 143 1e-33
CE23832 [A] KOG0341 DEAD-box protein abstrakt 143 1e-33
CE09012 [A] KOG0335 ATP-dependent RNA helicase 143 1e-33
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 143 1e-33
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 143 1e-33
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 142 2e-33
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 142 2e-33
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 142 2e-33
YDL031w [A] KOG0337 ATP-dependent RNA helicase 142 3e-33
7293060 [A] KOG0334 RNA helicase 142 3e-33
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 141 3e-33
7297629 [A] KOG0326 ATP-dependent RNA helicase 141 3e-33
YPL119c [A] KOG0335 ATP-dependent RNA helicase 141 4e-33
CE25231 [A] KOG0343 RNA Helicase 141 4e-33
YOR204w [A] KOG0335 ATP-dependent RNA helicase 140 6e-33
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 140 6e-33
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 140 6e-33
CE28031 [A] KOG0334 RNA helicase 140 8e-33
CE27427 [A] KOG0334 RNA helicase 140 8e-33
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 140 8e-33
YGL078c [A] KOG0331 ATP-dependent RNA helicase 140 1e-32
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 140 1e-32
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 139 1e-32
CE25121 [A] KOG0335 ATP-dependent RNA helicase 139 2e-32
YGL171w [A] KOG0344 ATP-dependent RNA helicase 138 3e-32
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 138 3e-32
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 138 3e-32
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 138 3e-32
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 138 3e-32
7303950 [A] KOG0340 ATP-dependent RNA helicase 138 3e-32
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 138 4e-32
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 137 5e-32
CE27728 [A] KOG0346 RNA helicase 137 6e-32
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 137 6e-32
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 137 6e-32
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 137 6e-32
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 137 6e-32
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 137 8e-32
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 136 1e-31
CE18785 [A] KOG0331 ATP-dependent RNA helicase 136 1e-31
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 136 1e-31
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 135 2e-31
7295314 [A] KOG0331 ATP-dependent RNA helicase 135 2e-31
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 135 2e-31
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 135 2e-31
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 135 2e-31
7296891 [A] KOG0341 DEAD-box protein abstrakt 135 2e-31
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 135 3e-31
YDL160c [A] KOG0326 ATP-dependent RNA helicase 134 4e-31
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 134 4e-31
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 134 5e-31
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 134 5e-31
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 134 5e-31
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 133 9e-31
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 133 9e-31
YNL112w [A] KOG0331 ATP-dependent RNA helicase 133 1e-30
YLR276c [A] KOG0346 RNA helicase 133 1e-30
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 133 1e-30
CE07736 [A] KOG0335 ATP-dependent RNA helicase 133 1e-30
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 133 1e-30
7299061 [A] KOG0335 ATP-dependent RNA helicase 133 1e-30
Hs9506931 [A] KOG0346 RNA helicase 132 2e-30
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 132 2e-30
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 132 2e-30
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 132 3e-30
CE23814 [A] KOG0340 ATP-dependent RNA helicase 131 5e-30
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 131 5e-30
7290853 [A] KOG0331 ATP-dependent RNA helicase 131 5e-30
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 130 8e-30
At1g20920 [A] KOG0334 RNA helicase 130 1e-29
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 130 1e-29
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 129 1e-29
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 129 1e-29
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 129 1e-29
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 129 2e-29
At4g34910 [A] KOG0346 RNA helicase 129 2e-29
SPAC1093.05 [A] KOG0343 RNA Helicase 129 2e-29
7296990 [A] KOG0329 ATP-dependent RNA helicase 129 2e-29
YBR237w [A] KOG0334 RNA helicase 128 4e-29
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 128 4e-29
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 128 4e-29
7294797 [A] KOG0339 ATP-dependent RNA helicase 128 4e-29
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 127 5e-29
CE29052 [A] KOG0335 ATP-dependent RNA helicase 127 5e-29
At5g54910 [A] KOG0343 RNA Helicase 126 1e-28
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 126 1e-28
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 126 1e-28
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 126 1e-28
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 125 2e-28
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 125 2e-28
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 125 2e-28
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 125 3e-28
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 125 3e-28
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 125 3e-28
CE17559 [A] KOG0339 ATP-dependent RNA helicase 124 4e-28
7295505 [A] KOG0346 RNA helicase 124 4e-28
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 124 6e-28
7298989 [A] KOG0336 ATP-dependent RNA helicase 124 6e-28
7293369 [A] KOG0343 RNA Helicase 124 6e-28
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 124 7e-28
YOR046c [A] KOG0332 ATP-dependent RNA helicase 122 2e-27
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 122 3e-27
7299006 [A] KOG0345 ATP-dependent RNA helicase 122 3e-27
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 121 4e-27
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 121 4e-27
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 120 6e-27
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 120 8e-27
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 120 8e-27
SPCC1494.06c [A] KOG0346 RNA helicase 120 1e-26
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 119 2e-26
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 119 2e-26
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 119 2e-26
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 119 2e-26
CE03025 [A] KOG0329 ATP-dependent RNA helicase 118 4e-26
YFL002c [A] KOG0345 ATP-dependent RNA helicase 117 7e-26
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 117 7e-26
At3g09620 [A] KOG0334 RNA helicase 117 7e-26
CE03821 [A] KOG0345 ATP-dependent RNA helicase 117 9e-26
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 117 9e-26
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 117 9e-26
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 116 1e-25
CE22474 [A] KOG0336 ATP-dependent RNA helicase 116 2e-25
CE06239 [A] KOG0344 ATP-dependent RNA helicase 115 2e-25
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 115 3e-25
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 115 3e-25
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 114 5e-25
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 114 5e-25
CE11402 [A] KOG0334 RNA helicase 114 6e-25
7293348 [A] KOG0348 ATP-dependent RNA helicase 114 6e-25
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 113 1e-24
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 113 1e-24
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 113 1e-24
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 113 1e-24
7294824 [K] KOG4284 DEAD box protein 113 1e-24
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 112 2e-24
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 111 5e-24
Hs14251212 [K] KOG4284 DEAD box protein 109 2e-23
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 108 3e-23
7293941 [A] KOG0344 ATP-dependent RNA helicase 108 4e-23
YDL084w [A] KOG0329 ATP-dependent RNA helicase 107 9e-23
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 107 9e-23
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 106 2e-22
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 105 3e-22
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 105 4e-22
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 102 2e-21
7296165 [A] KOG0330 ATP-dependent RNA helicase 101 4e-21
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 101 5e-21
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 98 6e-20
CE18221 [A] KOG0332 ATP-dependent RNA helicase 98 6e-20
CE18220 [A] KOG0332 ATP-dependent RNA helicase 98 6e-20
CE18219 [A] KOG0332 ATP-dependent RNA helicase 98 6e-20
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 96 2e-19
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 96 2e-19
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 96 2e-19
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 94 1e-18
CE28485 [K] KOG4284 DEAD box protein 93 1e-18
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 93 1e-18
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 93 2e-18
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 91 7e-18
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 89 2e-17
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 89 2e-17
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 89 2e-17
CE29051 [A] KOG0335 ATP-dependent RNA helicase 87 1e-16
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 85 5e-16
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 83 1e-15
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 82 4e-15
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 80 9e-15
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 77 8e-14
YKR024c [A] KOG0348 ATP-dependent RNA helicase 76 2e-13
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 76 2e-13
CE26264 [A] KOG0335 ATP-dependent RNA helicase 75 4e-13
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 73 2e-12
7290730 [A] KOG0331 ATP-dependent RNA helicase 68 5e-11
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 65 3e-10
YMR190c [L] KOG0351 ATP-dependent DNA helicase 62 3e-09
Hs22045464 [A] KOG0343 RNA Helicase 60 1e-08
CE27336 [A] KOG0334 RNA helicase 59 2e-08
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 57 9e-08
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 57 1e-07
CE27320 [A] KOG0335 ATP-dependent RNA helicase 53 2e-06
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 52 3e-06
YGL064c [A] KOG0335 ATP-dependent RNA helicase 52 4e-06
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 52 5e-06
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 787 bits (2033), Expect = 0.0
Identities = 428/779 (54%), Positives = 528/779 (66%), Gaps = 55/779 (7%)
Query: 48 DITVNANELNWKSVDIPDTLDDFGGFYGLEEIXXXXXXXXXXXXQFITKDNKNVKKEP-- 105
+I V+ ++LNWK VDIPDTLDDFGGFYGLEEI F+TK + V K+
Sbjct: 18 EIIVDESKLNWKPVDIPDTLDDFGGFYGLEEIDGVDVKVVDGKVTFVTKKDSKVLKDSNK 77
Query: 106 EQVEEKDNIVFQEDDEDVNMDELIEFKNFDDIKEGELXXXXXXXXXXXXXXXXXXXXXXX 165
E+V + V E D + EL+EFKN DDIKEGEL
Sbjct: 78 EKVGDDQESVENESGSD-SESELLEFKNLDDIKEGELSAASYSSSDEDEQG--------- 127
Query: 166 XXXXXXXXXXXXXNVKGEAGTVVTEDQTND---DLLQSNVFSSNVDIDDQEPPVLPEWSE 222
N++ T +ED D D+L+ NVF+ +++IDD P LPEW+
Sbjct: 128 -------------NIESSKLTDPSEDVDEDVDEDVLKENVFNKDINIDDISPVNLPEWTN 174
Query: 223 NMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI 282
LS T+L+ L L F RPTEIQ KSIP+ ++G ++MGKASTGSGKTLAYGIPI+E+LI
Sbjct: 175 LAPLSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLI 234
Query: 283 KDTS--NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERIL 340
+ S N + I LIFTPTRELAHQVTDHL+K+ + ++Y+ILSLTGGLSIQKQ+R+L
Sbjct: 235 SNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLL 294
Query: 341 KYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILK-L 399
KYD SG+I++ATPGRFLELLE++ LI RF+K++TL+LDEADRLLQDGHFDEFEKI+K L
Sbjct: 295 KYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHL 354
Query: 400 LGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLN 459
L + RK + + +G + WQT+IFSATFS+DLF KL + + +E+ V+
Sbjct: 355 LVERRKNRENSEG--SSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQ 412
Query: 460 HLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNA 519
HLM KI F SKPVIIDTNPE KV+SQ+KESLIEC P+ERDLY YYF+ M+PGTTL+FCNA
Sbjct: 413 HLMSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNA 472
Query: 520 IDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGK--------PTI 571
IDSVKKL +LNNL I +FQIHSSM QKNRL++LE+FK+QS K + T+
Sbjct: 473 IDSVKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTV 532
Query: 572 LIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPL 631
LIASDVAARGLDI G++HV+HYHLPRS D+YIHRSGRTAR +EGVS MICSPQESMGPL
Sbjct: 533 LIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPL 592
Query: 632 RKLRKVLSTK---------KSSNPRKTKWQNDVPMLPLEPDIVSQLRERSKIASELADDE 682
RKLRK L+TK +S+N + KWQN VP+LP+E DI+SQLRERS++A ELAD E
Sbjct: 593 RKLRKTLATKNSVSTDLNSRSTNRKPIKWQNTVPLLPIETDILSQLRERSRLAGELADHE 652
Query: 683 IATKSLHKDDNWLKKAA-----XXXXXXXXXXXXXKDQFLARXXXXXXXXXXXXXXXXXX 737
IA+ SL KDDNWLKKAA D FL +
Sbjct: 653 IASNSLRKDDNWLKKAADELGIDVDSDEDDISKSNSDTFLLKNKNKKMQKTINKDKVKAM 712
Query: 738 XYQLNELLKMPLRKDLRKSYLTGGLTNLADTLVKHKGHNSIIGHDKVDALQTLKGKKHK 796
LNELL +P+RKD R+ YLTGGL NLAD LVK +GHNSIIGH+K +AL+TLK KK +
Sbjct: 713 RATLNELLSVPIRKDRRQKYLTGGLVNLADNLVKKRGHNSIIGHEKTNALETLKKKKKR 771
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 373 bits (958), Expect = e-103
Identities = 247/741 (33%), Positives = 369/741 (49%), Gaps = 101/741 (13%)
Query: 54 NELNWKSVDIPDTLDDFGGFYGLEEIXXXXXXXXXXXXQFITKDNKNVKKEPEQVEEKDN 113
+EL WK V +PD LDDF GF GLEEI + ++K +P+ ++
Sbjct: 8 DELKWKEVKLPDHLDDFDGFMGLEEI-----------------EGVDIKYQPKGAMKE-- 48
Query: 114 IVFQEDDEDVNMDELIEFKNFDDIKEGELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 173
++++ + D+ E + D + E
Sbjct: 49 VIYELPEVHEKKDKKPEKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNY------ 102
Query: 174 XXXXXNVKGEAGTVVTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKG 233
E T+ ED+ N S VD+ W+ + LS +L
Sbjct: 103 --------NEFSTLEEEDEHN---------SHGVDVS--------AWA-HFSLSPEMLGS 136
Query: 234 LSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGL 293
LS GF++P IQ IP A G +I+GKA TGSGKTLA+GIPI+E +++ L
Sbjct: 137 LSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQAL 196
Query: 294 IFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATP 353
+ PTRELAHQ+ H + + N ++S+TGGL++QKQ+R+L + ++VATP
Sbjct: 197 VVAPTRELAHQICQHFELIKPSPN----IRVMSITGGLAVQKQQRLL--NKHPHVVVATP 250
Query: 354 GRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGK 413
GR ++ N +L F KI LVLDEADRLLQ HF+E K+L++LG
Sbjct: 251 GRLWSVINEN-NLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGN----------- 298
Query: 414 PTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVI 473
P + QT IFSATF L +L K G + + +++K+++F KP
Sbjct: 299 PMHTQRQTFIFSATFDEGLQQRLKKNM------KGNITEKYNSPMENMLKEVRFFGKPKF 352
Query: 474 IDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNL 533
+D NP+ V S+V E LIEC P E+DLY+YY IM YPG T+VF N I+ +K++ FLN L
Sbjct: 353 LDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFLNEL 412
Query: 534 KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHY 593
K+ S+ +H+ + QK RL++LEKF KN+ G +L+ +DVAARG+DI + HV+HY
Sbjct: 413 KVPSYPLHAQLDQKKRLQSLEKF-----KNNPKG---VLVCTDVAARGIDIPSVTHVIHY 464
Query: 594 HLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQN 653
H+P +AD+Y+HRSGRTAR + +GVS+++C P+E LS K R K
Sbjct: 465 HVPHTADMYVHRSGRTARANEDGVSILMCGPKE-----------LSQLKRLCYRLKKKIE 513
Query: 654 DVPMLPLEPDIVSQLRERSKIASELADDEIATKSLHKDDNWLKKAAXXXXXXXXXXXXXK 713
P++ I+ L+ R +A ++ + + +++ WLK A +
Sbjct: 514 TFINFPVDMSILDILKTRVVLAHKIVNLTRKDGRVGREEAWLKSMA---QELGVESSDDE 570
Query: 714 DQFLARXXXXXXXXXXXXXXXXXXXYQLNELLKMPLRKDLRKSYLTGGLTNLADTLVKHK 773
D L + +L LL +R YLT GL N+A+ L +
Sbjct: 571 DPDLPKKSESSKNKKQIAHLRS----ELAPLLHEKIRTGFSGRYLTSGLVNMAEKLANEE 626
Query: 774 GHNSIIGHDKVDALQTLKGKK 794
H++IIG D + AL+ L+ +K
Sbjct: 627 VHDNIIGMDSISALEVLQKRK 647
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 258 bits (658), Expect = 3e-68
Identities = 178/575 (30%), Positives = 284/575 (48%), Gaps = 98/575 (17%)
Query: 183 EAGTVVTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRP 242
E V ED + V I E + W+ + + ++L+ L GF P
Sbjct: 180 EEEVVKAEDSADQQESTDEEAPELVPISTGEAEDMSAWN-GLGVPASILRALGEQGFKTP 238
Query: 243 TEIQLKSIPLALKGH-NIMGKASTGSGKTLAYGIPII----------------------- 278
T+IQ ++P A+ G +I+G A TGSGKTLA+GIP++
Sbjct: 239 TQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKG 298
Query: 279 ----------------EQL--IKDTSNDRS-------------IGLIFTPTRELAHQVTD 307
E+L + S++ S GL+ TPTRELA QV +
Sbjct: 299 QQPEPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKN 358
Query: 308 HLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLI 367
HL K + ++ GGL++ KQER+L+ I+VATPGR EL + +
Sbjct: 359 HL----VAAAKYTGIRVAAIFGGLAVAKQERVLRQCPD--IVVATPGRLWELYAQGNRHL 412
Query: 368 PRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSAT 427
+ + LV+DE DR+++ GHF+E +LK+L + K Q ++SAT
Sbjct: 413 GKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQR---------QNFVYSAT 463
Query: 428 FSL--DLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQ 485
+L DL + K + + K ++Q + L++++ S+P I+D +
Sbjct: 464 LTLVHDLPDHMQKRN--VGKRPKFVKQTVDQKIESLIEELGI-SQPKIVDITSSQQTAQT 520
Query: 486 VKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMA 545
+ ES + C +D ++YYFI +PG T+VFCN+ID VK+L L + +H++M
Sbjct: 521 LTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMI 580
Query: 546 QKNRLRNLEKFKEQSEKNSKVGKPT-ILIASDVAARGLDISGIKHVLHYHLPRSADVYIH 604
QK RL+NLE+F++ PT +LIA+DVAARGLDI ++HV+HY +PR+++ Y+H
Sbjct: 581 QKQRLKNLERFRD---------SPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVH 631
Query: 605 RSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDI 664
RSGRTAR + G++VM P G ++ K+ T + + D+P+ P+
Sbjct: 632 RSGRTARANKHGITVMFMEP----GEVKSYVKLYKTLERT--------EDLPLFPILERF 679
Query: 665 VSQLRERSKIASELADDEIATKSLHKDDNWLKKAA 699
+ +RER +A +L +E+ K + + W+KK A
Sbjct: 680 MGAVRERVNLARDLDKEELKLKRVQSERGWMKKHA 714
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 244 bits (624), Expect = 3e-64
Identities = 142/409 (34%), Positives = 228/409 (55%), Gaps = 41/409 (10%)
Query: 291 IGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIV 350
+GL+ TPTRELA QV H+ V + L GG+S QKQ+R+L + I+V
Sbjct: 389 LGLVLTPTRELAVQVKQHIDAV----ARFTGIKTAILVGGMSTQKQQRML--NRRPEIVV 442
Query: 351 ATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSI 410
ATPGR EL++ + ++ LV+DEADR+++ GHF E ++L++L ++
Sbjct: 443 ATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKR- 501
Query: 411 DGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSK 470
QT++FSAT +L + + +IL + + L+ LM+KI + K
Sbjct: 502 ---------QTLVFSATLTL-----VHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGK 547
Query: 471 PVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFL 530
P +ID + E+ I C E+D Y+YYF+M YPG +LVF N+I +K+L+ L
Sbjct: 548 PKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLL 607
Query: 531 NNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHV 590
L I +H+ M QK RLRNLE+F + +L+A+DVAARGLDI ++HV
Sbjct: 608 KVLDIMPLTLHACMHQKQRLRNLEQFARLED--------CVLLATDVAARGLDIPKVQHV 659
Query: 591 LHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTK 650
+HY +PR++++Y+HRSGRTAR NEG+S+M+ P++ + +K+ K L K
Sbjct: 660 IHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVIN-FKKIYKTL-----------K 707
Query: 651 WQNDVPMLPLEPDIVSQLRERSKIASELADDEIATKSLHKDDNWLKKAA 699
D+P+ P++ + ++ER ++A ++ E ++W+++AA
Sbjct: 708 KDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAA 756
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 244 bits (622), Expect = 5e-64
Identities = 166/522 (31%), Positives = 268/522 (50%), Gaps = 65/522 (12%)
Query: 210 DDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLAL-KGHNIMGKASTGSG 268
+++ PP WS +M L ++K + L F PT+IQ +A +G +++G A TGSG
Sbjct: 183 EEEIPPEFSAWS-SMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSG 241
Query: 269 KTLAYGIPIIEQLIKDTSNDRSI------------------GLIFTPTRELAHQVTDHLQ 310
KTLA+G+PI+++L+ + + LI TPTRELA QVT+HL+
Sbjct: 242 KTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLE 301
Query: 311 KVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRF 370
++ ++ + GG+ +KQER LK I+VATPGR EL+ +
Sbjct: 302 NAAKNLS----VKVVPIVGGMFSEKQERRLKE--KPEIVVATPGRLWELMSAGEKHLVEL 355
Query: 371 AKIDTLVLDEADRLLQDGHFDEFEKILKLL--------GKARKIKTS--IDGKPTGSGWQ 420
+ VLDEADR+++ GHF E + IL LL GK + +K++ + P Q
Sbjct: 356 HSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKR-Q 414
Query: 421 TMIFSATFSL--DLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNP 478
T +FSAT +L D KL + S K +++ GE N +E L ++ + IID
Sbjct: 415 TFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEV----LSERAGMRDNVAIIDLTT 470
Query: 479 EHKVTSQVKESLIECLPMERDLYVYYFIMMY-PGTTLVFCNAIDSVKKLNAFLNNLKISS 537
+ +++ES I+C E+D Y+YY + ++ G T+VFC ++ ++ ++ L L +
Sbjct: 471 TSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDV 530
Query: 538 FQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPR 597
+ S M Q+ RL+++++F+ ILIA+D+ ARG+DI ++ ++HY LP
Sbjct: 531 CTLFSEMKQRARLKSIDRFRASENG--------ILIATDLVARGIDIKNVRTIIHYKLPH 582
Query: 598 SADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDVPM 657
SA+VY+HR GRTAR +G S+ + P E T K K+ V +
Sbjct: 583 SAEVYVHRCGRTARAFADGCSIALIEPNE-------------TSKFYTLCKSFSMESVKI 629
Query: 658 LPLEPDIVSQLRERSKIASELADDEIATKSLHKDDNWLKKAA 699
PL+ + +R+R +A ++ + E + D WLKK A
Sbjct: 630 FPLDNSYMPAVRKRLYLARQIYEIERKGSRENADRTWLKKHA 671
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 239 bits (610), Expect = 1e-62
Identities = 162/495 (32%), Positives = 266/495 (53%), Gaps = 55/495 (11%)
Query: 220 WSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGH-NIMGKASTGSGKTLAYGIPII 278
W + L VL+ + +GF+ PTEIQ +P A++ +++G A TGSGKTLA+GIP++
Sbjct: 156 WKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLV 215
Query: 279 EQLIKDTSNDRSI---------GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTG 329
+L++ + + + LI PTREL Q+ H+ + + + S+ G
Sbjct: 216 ARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLI----ATSIVG 271
Query: 330 GLSIQKQERILKYDGSGRIIVATPGRFLELLER--NPDLIPRFAKIDTLVLDEADRLLQD 387
GL+ KQERI+ I+VATPGR +++ + + + + LV+DE DR++++
Sbjct: 272 GLAQVKQERIISQQRPD-IVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEE 330
Query: 388 GHFDEFEKIL-KLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKT 446
G+F E IL K+ ++ K K QT++FSAT + F K + + K
Sbjct: 331 GYFAELTHILNKIHEESEKEKL-----------QTLVFSATLT---FAKAQDVAEEEKKK 376
Query: 447 AGGENNEMEQVLNHLMKKIQFK-SKPVIIDTNPEHKVTSQVKESLIECLPM-ERDLYVYY 504
A + +Q + L+K + +K +ID + + E+ I C + E+D + Y
Sbjct: 377 A--KELSSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVY 434
Query: 505 FIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNS 564
+ YPG T+VF N+ID+ ++L + L ++ I +H+ M QK RL+NLEKF E
Sbjct: 435 LLTRYPGRTIVFVNSIDAARRLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSES----- 489
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
K +L+A+DVAARGLDI GI HV+HY +P+ ++YIHRSGRTAR + G++V++ P
Sbjct: 490 ---KNAVLLATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARASHRGLTVVLVDP 546
Query: 625 QESMGPLRKLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRERSKIASELADDEIA 684
S KL K L+ + N V + EP +++ +++R ++ASE+
Sbjct: 547 -PSRQFYMKLCKGLNRMQDLN---------VFPIDFEP-LMNAIKKRVRLASEIDSLGFR 595
Query: 685 TKSLHKDDNWLKKAA 699
K + ++W +KAA
Sbjct: 596 CKKIKMSESWFEKAA 610
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 195 bits (496), Expect = 2e-49
Identities = 155/531 (29%), Positives = 256/531 (48%), Gaps = 81/531 (15%)
Query: 179 NVKGEAGTVVTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLG 238
N AG+ +E+ +++ + N F + D + ++M+LS +LKGLS LG
Sbjct: 220 NSDSAAGSSDSEED-EEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLG 278
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI-KDTSNDRSIGLIFTP 297
F PT+IQ K+IPLAL G +I+G A TGSGKT A+ +PI+E+L+ + + LI P
Sbjct: 279 FEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCP 338
Query: 298 TRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFL 357
TRELA Q V TK+ + GGLS++ QE+ L+ I++ATPGRF+
Sbjct: 339 TRELAMQ----CHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPD--IVIATPGRFI 392
Query: 358 ELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGS 417
+ + + I+ +V+DEADR+L+DG DE +I++ K+R
Sbjct: 393 DHMRNSQGF--TVENIEIMVMDEADRMLEDGFADELNEIIQACPKSR------------- 437
Query: 418 GWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTN 477
QTM+FSAT + D L + S ++PV + +
Sbjct: 438 --QTMLFSATMT-DKVDDLIRLS---------------------------LNRPVRVFVD 467
Query: 478 PEHKVTSQVKESLIECLP----MERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNL 533
+ + + + P + + +Y ++ T++F + K+ L
Sbjct: 468 NKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLL 527
Query: 534 KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHY 593
+++ +IH S++Q+ R+R LE F++ GK L+A+DVA+RG+DI GI+ V++Y
Sbjct: 528 SLNATEIHGSLSQEQRVRALEDFRD--------GKCNYLLATDVASRGIDIKGIEVVINY 579
Query: 594 HLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVL-STKKSSNPRKTKWQ 652
P + +VY+HR GRTAR G ++ + + RKVL K+S+ + TK
Sbjct: 580 EAPATHEVYLHRVGRTARAGRSGRAITLAGEGD--------RKVLKGVFKNSSAQNTKLV 631
Query: 653 NDVPMLPLEPDIVSQLRERSKIASELADDE-------IATKSLHKDDNWLK 696
N ++ E + ++ D+E IA + L K +N +K
Sbjct: 632 NRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMK 682
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 176 bits (447), Expect = 1e-43
Identities = 146/520 (28%), Positives = 261/520 (50%), Gaps = 72/520 (13%)
Query: 190 EDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKS 249
+++ + + +++ ++ + D+ + + ++ ++ LS VLKGL+ LG+ +P+ IQ +
Sbjct: 203 DEEDDSEEAKADFYAPETEGDEAKKQMYENFN-SLSLSRPVLKGLASLGYVKPSPIQSAT 261
Query: 250 IPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIG-LIFTPTRELAHQVTDH 308
IP+AL G +I+ A TGSGKT A+ IPIIE+L+ + S ++ PTRELA QV D
Sbjct: 262 IPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADV 321
Query: 309 LQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIP 368
+++ ++ T GGL++++QE++LK I++ATPGRF++ + +
Sbjct: 322 GKQI---ARFVSGITFGLAVGGLNLRQQEQMLK--SRPDIVIATPGRFIDHIRNSASF-- 374
Query: 369 RFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATF 428
++ LV+DEADR+L++G DE +I+ LL R Q ++FSAT
Sbjct: 375 NVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNR---------------QNLLFSATM 419
Query: 429 SLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKE 488
N++++ +++ +K KPV I +P K +++ +
Sbjct: 420 ----------------------NSKIKSLVSLSLK------KPVRIMIDPPKKAATKLTQ 451
Query: 489 SLIECLPME--RDLYVYYFIMMYPGT----TLVFCNAIDSVKKLNAFLNNLKISSFQIHS 542
+ + + ++ I T +VF ++ +L + L +S ++H
Sbjct: 452 EFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHG 511
Query: 543 SMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVY 602
S+ Q+ RL ++ KF KN +V +LI +D+A+RGLDI I+ V++Y +P+S ++Y
Sbjct: 512 SLTQEQRLDSVNKF-----KNLEV---PVLICTDLASRGLDIPKIEVVINYDMPKSYEIY 563
Query: 603 IHRSGRTARGDNEGVSV-MICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQN-DVPMLPL 660
+HR GRTAR EG SV + + +R K + KS K +N D +
Sbjct: 564 LHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEE 623
Query: 661 EPDIVSQLRERSK--IASELADDEI--ATKSLHKDDNWLK 696
+V + + + + E + EI A L K +N LK
Sbjct: 624 TNKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLK 663
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 176 bits (445), Expect = 2e-43
Identities = 140/484 (28%), Positives = 234/484 (47%), Gaps = 83/484 (17%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK 283
M+LS +++ + LG+ PT IQ +IP+AL G +I G A+TG+GKT AY +P +E+L+
Sbjct: 162 MNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLY 221
Query: 284 DTSNDRSIG--LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
N+++I L+ PTREL QV +V ++ + + GGL ++ QE +L+
Sbjct: 222 RPLNNKAITRVLVLVPTRELGAQV----YQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLR 277
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ I++ATPGR ++ ++ P I+ L+LDEADR+L + ++ ++I+
Sbjct: 278 QNPD--IVIATPGRLIDHIKNTPSF--TLDSIEVLILDEADRMLDEYFAEQMKEIINSCC 333
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
K R QTM+FSAT S EQV +
Sbjct: 334 KTR---------------QTMLFSATMS-------------------------EQVKDLA 353
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLI---ECLPMERD-LYVYYFIMMYPGTTLVFC 517
+ KP+ + N +V +++ I E +R+ + + +VF
Sbjct: 354 AVSL---DKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFV 410
Query: 518 NAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDV 577
+L+ L L + + ++H ++ Q+ RL +L+KFKE+ + +LIA+DV
Sbjct: 411 QTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEE--------QIDVLIATDV 462
Query: 578 AARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKV 637
AARGLDI G+K V+++ +P + + YIHR GRTAR G+SV + +E RK+ K
Sbjct: 463 AARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE-----RKIVKD 517
Query: 638 LSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRER----SKIASELADDEIATKSLHKDDN 693
+ N T +P P+I+ + R + + D+E A + L K +
Sbjct: 518 I----IKNAESTIKNRIIP-----PEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQ 568
Query: 694 WLKK 697
L K
Sbjct: 569 QLSK 572
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 173 bits (439), Expect = 8e-43
Identities = 131/448 (29%), Positives = 217/448 (48%), Gaps = 76/448 (16%)
Query: 237 LGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFT 296
LG+T+PT+IQ+++IPLAL+G +I+G A TGSGKT A+ +PI+ L++ + R L+ T
Sbjct: 42 LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE--TPQRLFALVLT 99
Query: 297 PTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRF 356
PTRELA Q+++ + + + + + + GG+ Q L II+ATPGR
Sbjct: 100 PTRELAFQISEQFEALGSSIGVQSAV----IVGGIDSMSQS--LALAKKPHIIIATPGRL 153
Query: 357 LELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTG 416
++ LE R K LV+DEADR+L E +KILK++ + RK
Sbjct: 154 IDHLENTKGFNLRALKY--LVMDEADRILNMDFETEVDKILKVIPRDRK----------- 200
Query: 417 SGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDT 476
T +FSAT + K+ K LK PV
Sbjct: 201 ----TFLFSATMT----KKVQKLQRAALK------------------------NPVKCAV 228
Query: 477 NPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTT-LVFCNAIDSVKKLNAFLNNLKI 535
+ +++ ++++ I +D Y+ Y + G + ++FC+ ++ ++ L NL
Sbjct: 229 SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGF 288
Query: 536 SSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHL 595
++ +H M+Q RL +L KFK ++ +IL+A+DVA+RGLDI + V+++ +
Sbjct: 289 TAIPLHGQMSQSKRLGSLNKFKAKAR--------SILLATDVASRGLDIPHVDVVVNFDI 340
Query: 596 PRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDV 655
P + YIHR GRTAR G ++ + Q + +++ ++ K +
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVT-QYDVELFQRIEHLIGKK-------------L 386
Query: 656 PMLPLEPDIVSQLRERSKIASELADDEI 683
P P + D V L ER A A E+
Sbjct: 387 PGFPTQDDEVMMLTERVAEAQRFARMEL 414
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 172 bits (436), Expect = 2e-42
Identities = 137/480 (28%), Positives = 227/480 (46%), Gaps = 74/480 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E + L+ ++ LG +PT +Q +P L G +++G A TGSGKT A+ +PI+ +L
Sbjct: 61 EGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRL 120
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+D L+ TPTRELA Q+ + + + + +N + GG+ + Q L
Sbjct: 121 AEDPYG--VFALVVTPTRELAFQLAEQFKALGSCLN----LRCSVIVGGMDMLTQTMSLV 174
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
I++ TPGR LLE NPD+ P F++ LVLDEADR+L G DE I + L
Sbjct: 175 --SRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLP 232
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
K+R QT++FSAT + +L L+ +S K E E + ++ L
Sbjct: 233 KSR---------------QTLLFSATMTSNLQALLEHSS---NKAYFYEAYEGLKTVDTL 274
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPG----TTLVFC 517
++ F+ K ++LY+ + + + ++F
Sbjct: 275 TQQFIFEDKDA-------------------------KELYLVHILSQMEDKGIRSAMIFV 309
Query: 518 NAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDV 577
+ + ++L+ L+ L++ + +HS +Q RL L KFK GK IL+A+DV
Sbjct: 310 STCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKS--------GKVPILLATDV 361
Query: 578 AARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP---------QESM 628
A+RGLDI + V++Y +PR Y+HR GRTAR G++V I + +E +
Sbjct: 362 ASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEV 421
Query: 629 G-PLRKLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRERSKIASE-LADDEIATK 686
G + K + T + +K + M L+ ++++R K+ + LAD + K
Sbjct: 422 GKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLADKGLLKK 481
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 168 bits (426), Expect = 3e-41
Identities = 148/528 (28%), Positives = 243/528 (45%), Gaps = 103/528 (19%)
Query: 190 EDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKS 249
+ Q N+D FS+ +D + V + E M+LS +LK SG G++ PT IQ
Sbjct: 125 KSQENEDF-----FSALIDGKSLDTSVNVSF-EQMNLSRQILKACSGAGYSDPTPIQQAC 178
Query: 250 IPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI---KDTSNDRSIGLIFTPTRELAHQVT 306
IP+AL G +I A+TG+GKT A+ +PI+E++I K S R L+ PTRELA QV
Sbjct: 179 IPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRV--LVLVPTRELAIQVF 236
Query: 307 DHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDL 366
+V+ K++ + + GGL ++ QE L+ ++VATPGR ++ L +P
Sbjct: 237 ----QVFRKLSTFIQLEVCLCAGGLDLKAQEAALR--SGPDVVVATPGRLIDHLHNSPSF 290
Query: 367 ----------------------IPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKAR 404
I + LVLDEADR+L++ D+ ++++L + R
Sbjct: 291 NLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCAQNR 350
Query: 405 KIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKK 464
QT++FSAT + ++ + K +K EN + L +
Sbjct: 351 ---------------QTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIR 395
Query: 465 IQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVK 524
I+ +T+ E V + V + + T+VF +
Sbjct: 396 IRAGR-----ETDREAMVAALVTRT-------------------FQTNTIVFVRTKKDCQ 431
Query: 525 KLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDI 584
++ L L I Q+ SS+ Q R+ +L KFK+ + +L+++D+A+RGLDI
Sbjct: 432 RMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKK--------AEIDVLVSTDLASRGLDI 483
Query: 585 SGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSS 644
G++ V++ ++P+S YIHR GRTAR G S+ + E RK+L +S
Sbjct: 484 EGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDE--------RKLLKEIVNS 535
Query: 645 NPRKTKWQNDVPMLPLEPDIVSQLRER----SKIASELADDEIATKSL 688
N +T Q V P++V R R + ++ +++ A K L
Sbjct: 536 NADRTLKQRLV-----APEVVEAYRRRIDELEETIQQIDEEDRAEKEL 578
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 166 bits (419), Expect = 2e-40
Identities = 131/444 (29%), Positives = 218/444 (48%), Gaps = 65/444 (14%)
Query: 199 QSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHN 258
+S V + N + ++ E +SE ++L +++ L +++PT IQ K+IP AL+GH+
Sbjct: 106 KSTVSTQNENTNEDES--FESFSE-LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHD 162
Query: 259 IMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNK 318
I+G A TGSGKT A+ IPI+ +L D + I PTRELA Q+ ++ + +
Sbjct: 163 IIGLAQTGSGKTAAFAIPILNRLWHD--QEPYYACILAPTRELAQQI----KETFDSLGS 216
Query: 319 LNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVL 378
L + GG+++ Q R L II+ATPGR ++ LE R K+ LV+
Sbjct: 217 LMGVRSTCIVGGMNMMDQARDLM--RKPHIIIATPGRLMDHLENTKGFSLR--KLKFLVM 272
Query: 379 DEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDK 438
DEADRLL ++ILK++ + T +FSAT + +K+DK
Sbjct: 273 DEADRLLDMEFGPVLDRILKIIPTQER--------------TTYLFSATMT----SKIDK 314
Query: 439 TSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMER 498
L + PV + +++ + ++L+ +
Sbjct: 315 LQRASL------------------------TNPVKCAVSNKYQTVDTLVQTLMVVPGGLK 350
Query: 499 DLYVYYFIMMYPG-TTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFK 557
+ Y+ Y + + G T ++F + ++L+ N L+ S+ +H + Q R+ +L+ F
Sbjct: 351 NTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLF- 409
Query: 558 EQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGV 617
K GK +IL+A+DVAARGLDI + V++Y +P + YIHR GRTAR G
Sbjct: 410 -------KAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGK 462
Query: 618 SVMICSPQESMGPLRKLRKVLSTK 641
S+ + S Q + + ++ +VL K
Sbjct: 463 SISLVS-QYDLELILRIEEVLGKK 485
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 162 bits (410), Expect = 2e-39
Identities = 117/427 (27%), Positives = 207/427 (48%), Gaps = 63/427 (14%)
Query: 196 DLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALK 255
+L + V + ++ DD+E ++E + +S + LG+ +P++IQ ++P AL+
Sbjct: 22 NLTKKKVVTEEIEKDDEEDVKEKSFAE-LGVSQPLCDACQRLGWMKPSKIQQAALPHALQ 80
Query: 256 GHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTK 315
G +++G A TGSGKT A+ IP+++ L+ L+ TPTRELA Q+ + + +
Sbjct: 81 GKDVIGLAETGSGKTGAFAIPVLQSLLDHP--QAFFCLVLTPTRELAFQIGQQFEALGSG 138
Query: 316 MNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDT 375
+ + + GG+ + Q L IIVATPGR ++ LE + K
Sbjct: 139 IGLI----AAVIVGGVDMAAQAMALA--RRPHIIVATPGRLVDHLENTKGFNLKALKF-- 190
Query: 376 LVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTK 435
L++DEADR+L E +KILK++ + R+ T +FSAT + + +K
Sbjct: 191 LIMDEADRILNMDFEVELDKILKVIPRERR---------------TYLFSATMTKKV-SK 234
Query: 436 LDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLP 495
L++ S + P + + +K +K+ I
Sbjct: 235 LERASLR---------------------------DPARVSVSSRYKTVDNLKQHYIFVPN 267
Query: 496 MERDLYVYYFIMMYPG-TTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLE 554
++ Y+ Y + + G + +VFC + ++ L L + + +H M+Q+ RL +L
Sbjct: 268 KYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLN 327
Query: 555 KFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDN 614
KFK ++ + IL+ +DVAARGLDI + V++Y +P + Y+HR GRTAR
Sbjct: 328 KFKSKARE--------ILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGR 379
Query: 615 EGVSVMI 621
G+++ +
Sbjct: 380 SGIAITV 386
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 161 bits (408), Expect = 3e-39
Identities = 128/455 (28%), Positives = 221/455 (48%), Gaps = 78/455 (17%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M+LS +LK ++ +GF +PT IQ IP+ L G +I A+TG+GKT A+ +P++E+L
Sbjct: 221 QDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERL 280
Query: 282 I-KDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERIL 340
I K + L+ PTREL QV V ++ + T GGL ++ QE L
Sbjct: 281 IYKPRQAPVTRVLVLVPTRELGIQV----HSVTRQLAQFCNITTCLAVGGLDVKSQEAAL 336
Query: 341 KYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
+ + I++ATPGR ++ L P + I+ L+LDEADR+L + ++ ++I+++
Sbjct: 337 R--AAPDILIATPGRLIDHLHNCPSF--HLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 392
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNH 460
R QTM+FSAT + +E++ + +
Sbjct: 393 SHHR---------------QTMLFSATMT----------------------DEVKDLASV 415
Query: 461 LMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPM---ERDLYVYYFI-MMYPGTTLVF 516
+K PV I N V +++ I P +R+ V + + ++F
Sbjct: 416 SLK------NPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLF 469
Query: 517 CNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASD 576
+++ L + + ++H +++Q RL L +FK++ + IL+A+D
Sbjct: 470 TQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE--------QIDILVATD 521
Query: 577 VAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRK 636
VAARGLDI G+K V+++ +P + Y+HR GRTAR G SV + E RK+ K
Sbjct: 522 VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE-----RKMLK 576
Query: 637 VLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRER 671
+ K + P K + +LP D++ + R++
Sbjct: 577 EI-VKAAKAPVKAR------ILP--QDVILKFRDK 602
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 160 bits (406), Expect = 5e-39
Identities = 120/412 (29%), Positives = 201/412 (48%), Gaps = 64/412 (15%)
Query: 223 NMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI 282
++ +S ++ L L PT+IQ I L+G N +G A TGSGKT A+ +PIIE+
Sbjct: 11 DLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWS 70
Query: 283 KDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKY 342
KD S LI TPTRELA Q+ + + +N K+ + + GG+ + +Q +
Sbjct: 71 KDPSG--IFALILTPTRELAIQIDEQFAALGANLNL--KHAL--IVGGMDMIRQS--IDL 122
Query: 343 DGSGRIIVATPGRFLELLERN-PDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
++VATPGR +L+ N + I +I LV+DEADRLL D+ + +L
Sbjct: 123 SKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL- 181
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
P QT++F+AT + + L
Sbjct: 182 ------------PASEDRQTLLFTAT--------------------------VTDAIRQL 203
Query: 462 MKKIQFKSKPVI----IDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPG---TTL 514
+ Q +KP + ++T+ V S +++S I R+ Y+ + + + + +
Sbjct: 204 KYQPQKNNKPPLWLYEVETD-NISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAI 262
Query: 515 VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
+F N + + + + L L++ ++HS M Q+ R+ +L +F+ ++ K IL+A
Sbjct: 263 IFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAK--------ILVA 314
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
+DVA+RGLDI ++ V+++ LPR D YIHR GRTAR G S+ I + ++
Sbjct: 315 TDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 160 bits (405), Expect = 7e-39
Identities = 125/462 (27%), Positives = 217/462 (46%), Gaps = 70/462 (15%)
Query: 188 VTEDQTNDDLLQ-------SNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFT 240
+TED+ N L + S+ SS + D + P+ + + + + + LGF
Sbjct: 8 LTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFK 67
Query: 241 RPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRE 300
PT IQ ++IP+ L +++G A TGSGKT A+ +P+I++L + S ++ PTRE
Sbjct: 68 TPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSP--FFAVVLAPTRE 125
Query: 301 LAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELL 360
LA+Q+++ + + + + + + GG+ + Q L ++V TPGR ++ L
Sbjct: 126 LAYQISEQFEAIGGSIGVRS----VVIVGGMDMVTQAVALSK--KPHVLVCTPGRLMDHL 179
Query: 361 ERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQ 420
E + K L++DEADRLL +KILK++ R+
Sbjct: 180 ENTKGFSLKNLKY--LIMDEADRLLDMDFGPIIDKILKIIPHERR--------------- 222
Query: 421 TMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEH 480
T++FSAT + +K++K +++ H ++ SK +DT +
Sbjct: 223 TLLFSATMT----SKVEK---------------LQRASLHQPVRVAVSSKFSTVDTLIQR 263
Query: 481 KVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLV-FCNAIDSVKKLNAFLNNLKISSFQ 539
+ K +D Y+ Y + G +++ F ++ ++L L L S+
Sbjct: 264 YLFFPFKH---------KDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIP 314
Query: 540 IHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSA 599
+H ++Q NRL L KFK G + L+A+DVAARGLDI + V++Y +P +
Sbjct: 315 LHGQLSQSNRLGALNKFKS--------GARSTLVATDVAARGLDIPLVDVVINYDIPTDS 366
Query: 600 DVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
YIHR GRTAR G S+ + + Q + P ++ + K
Sbjct: 367 KAYIHRVGRTARAGRAGKSIALVT-QYDLEPFLRIEATIGKK 407
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 159 bits (401), Expect = 2e-38
Identities = 115/403 (28%), Positives = 202/403 (49%), Gaps = 62/403 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+++ L+ + + L + P++IQ ++IP+AL+G +++G A TGSGKT A+ +PI+ L
Sbjct: 64 KDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHAL 123
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+++ R L+ TPTRELA Q+ + + + + + + GG+ + Q L+
Sbjct: 124 LENP--QRYFALVLTPTRELAFQIGEQFEALGSGIG----IKCCVVVGGMDMVAQG--LQ 175
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
II+ATPGR ++ LE I LV+DEADR+L E +KILK+L
Sbjct: 176 LAKKPHIIIATPGRLVDHLENMKGF--NLKAIKYLVMDEADRILNMDFEVELDKILKVLP 233
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
+ R+ T +FSAT + + KL + S K
Sbjct: 234 RERR---------------TFLFSATMTKKV-KKLQRASLK------------------- 258
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTT-LVFCNAI 520
PV ++ + +++ Q+++S + +D+Y+ + + G + ++FC+
Sbjct: 259 --------DPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTC 310
Query: 521 DSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAAR 580
++ K L L +++ +H M+Q RL L KFK ++ +ILI++DVA+R
Sbjct: 311 NNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNR--------SILISTDVASR 362
Query: 581 GLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICS 623
GLDI + V+++ +P + YIHR GRTAR G ++ + S
Sbjct: 363 GLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVS 405
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 157 bits (398), Expect = 5e-38
Identities = 128/421 (30%), Positives = 210/421 (49%), Gaps = 66/421 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E + LS LK + +GFT T +Q ++IP L G +++G A TGSGKTLA+ IP IE L
Sbjct: 45 EELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELL 104
Query: 282 --IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLS-IQKQER 338
+K + + ++ TPTRELA Q+ V ++ + + T + GG + Q+ E+
Sbjct: 105 HSLKFKPRNGTGIIVITPTRELALQIFG----VARELMEFHSQTFGIVIGGANRRQEAEK 160
Query: 339 ILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILK 398
++K +++ATPGR L+ L+ + F + L++DEADR+L+ G DE +I+K
Sbjct: 161 LMK---GVNMLIATPGRLLDHLQNTKGFV--FKNLKALIIDEADRILEIGFEDEMRQIIK 215
Query: 399 LLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVL 458
+L + Q+M+FSAT + TK++
Sbjct: 216 ILPNEDR--------------QSMLFSATQT----TKVED-------------------- 237
Query: 459 NHLMKKIQFKSKPVIIDTNPE--HKVTSQVKESLIECLPMERDLYVYYFIMM-YPGTTLV 515
+ +I + P+ I+ PE + +++ + C +R L ++ F+ +V
Sbjct: 238 ---LARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIV 294
Query: 516 FCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIAS 575
F ++ +SVK LN + + ++H Q+ R +F N++ G ILI +
Sbjct: 295 FLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEF-----CNAERG---ILICT 346
Query: 576 DVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARG-DNEGVSVMICSPQESMGPLRKL 634
DVAARGLDI + ++ + P YIHR GRTARG +G S+M +P E +G LR L
Sbjct: 347 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNE-LGFLRYL 405
Query: 635 R 635
+
Sbjct: 406 K 406
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 157 bits (397), Expect = 6e-38
Identities = 137/458 (29%), Positives = 215/458 (46%), Gaps = 76/458 (16%)
Query: 209 IDDQEPPVLP-EWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGS 267
ID+ +P + ++ +++ +S LKGL F + TEIQ SIP++L+GH+++ A TGS
Sbjct: 30 IDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGS 89
Query: 268 GKTLAYGIPIIEQLIKD--TSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTIL 325
GKTLA+ +P+IE+L ++ T D LI +PTRELA Q+ + V TK+ ++
Sbjct: 90 GKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYE----VLTKIGSHTSFSAG 145
Query: 326 SLTGGLSIQKQ-ERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRL 384
+ GG ++ + ERI + + I++ TPGR L+ L++ L + + LVLDEADR
Sbjct: 146 LVIGGKDVKFELERISRIN----ILIGTPGRILQHLDQAVGL--NTSNLQMLVLDEADRC 199
Query: 385 LQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDL--FTKLDKTSWK 442
L G + I+ L +R QT++FSAT S + +L T +K
Sbjct: 200 LDMGFKKTLDAIVSTLSPSR---------------QTLLFSATQSQSVADLARLSLTDYK 244
Query: 443 ILKTA----GGENNEME--QVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPM 496
+ T G N E + L ++ K I+ + + S +K +I L
Sbjct: 245 TVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSF----IKSHLKCKMIVFLSS 300
Query: 497 ERDLYVYY--FIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLE 554
+ ++ Y F M PG IS +H Q+ R L+
Sbjct: 301 SKQVHFVYETFRKMQPG-----------------------ISLMHLHGRQKQRARTETLD 337
Query: 555 KFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDN 614
KF + L A+DV ARG+D + V+ P D YIHR GR AR
Sbjct: 338 KFNRAQQ--------VCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGK 389
Query: 615 EGVSVMICSPQESMGPLRKL--RKVLSTKKSSNPRKTK 650
+G S+++ +PQE L++L RK+ K + K K
Sbjct: 390 KGKSLIMLTPQEQEAFLKRLNARKIEPGKLNIKQSKKK 427
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 157 bits (396), Expect = 8e-38
Identities = 143/456 (31%), Positives = 216/456 (47%), Gaps = 78/456 (17%)
Query: 199 QSNVFSSNVDIDDQEPPVLPEWSENM--DLSFT---------VLKGLSGLGFTRPTEIQL 247
++NV + D D+ E P LP D SF LK + +GFT TEIQ
Sbjct: 148 ENNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQH 207
Query: 248 KSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK---DTSNDRSIGLIFTPTRELAHQ 304
KSI L+G +++ A TGSGKTLA+ IP +E ++K T N + LI +PTRELA Q
Sbjct: 208 KSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRNGTGV-LILSPTRELAMQ 266
Query: 305 VTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNP 364
L+++ T + ++ Y ++ S + Q K IIVATPGR L+ ++ P
Sbjct: 267 TFGVLKELMT--HHVHTYGLIMGGSNRSAEAQ----KLGNGINIIVATPGRLLDHMQNTP 320
Query: 365 DLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIF 424
+ + + LV+DEADR+L G +E ++I+KLL R QTM+F
Sbjct: 321 GFM--YKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---------------QTMLF 363
Query: 425 SATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKP--VIIDTNPEHKV 482
SAT + ++E + +I K +P V +D + +
Sbjct: 364 SAT----------------------QTRKVED-----LARISLKKEPLYVGVDDDKANAT 396
Query: 483 TSQVKESLIECLPMERDLYVYYFIMMYPGTTL-VFCNAIDSVKKLNAFLNNLKISSFQIH 541
+++ + C +R L ++ F+ L VF ++ SVK LN + + IH
Sbjct: 397 VDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIH 456
Query: 542 SSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADV 601
Q R +F N+ G L+ +DVAARGLDI + ++ Y P
Sbjct: 457 GKQKQNKRTTTFFQF-----CNADSG---TLLCTDVAARGLDIPEVDWIVQYDPPDDPKE 508
Query: 602 YIHRSGRTARGDN-EGVSVMICSPQESMGPLRKLRK 636
YIHR GRTARG N G +++I P+E +G LR L++
Sbjct: 509 YIHRVGRTARGLNGRGHALLILRPEE-LGFLRYLKQ 543
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 156 bits (395), Expect = 1e-37
Identities = 142/510 (27%), Positives = 246/510 (47%), Gaps = 77/510 (15%)
Query: 191 DQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSI 250
D+ + + + S + SN ++ ++M L+ T+L+ + GF PT IQ K+I
Sbjct: 41 DEDDGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
Query: 251 PLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQ 310
PL L+G +++G A TGSGKT A+ IP+IE L +N + LI +P RELA Q
Sbjct: 101 PLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTV---- 156
Query: 311 KVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRF 370
KV +K +++ GG+S+++Q +L G I+VATPGRFL L ++
Sbjct: 157 KVVKDFSKGTDLRSVAIVGGVSLEEQFSLL--SGKPDIVVATPGRFLHL---KVEMKLEL 211
Query: 371 AKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATF-- 428
+ I+ +V DEADRL + G + +IL L +R QT++FSAT
Sbjct: 212 SSIEYVVFDEADRLFEMGFAAQLTEILHALPTSR---------------QTLLFSATLPR 256
Query: 429 ----------------SLDLFTKLD---KTSWKILKTAGGENNEMEQVLNHLMK---KIQ 466
LD+ +K+ ++++ +KTA E + +L ++K K
Sbjct: 257 TLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAERE-AALLCILQDIIKLPLKDN 315
Query: 467 FKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKL 526
+ + + NP+ + K +L +L + P +TLVF V+ +
Sbjct: 316 VRPREIGNVNNPKKR-----KRAL--------ELALKGSESGSPDSTLVFVPTKHHVEYV 362
Query: 527 NAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISG 586
+ L S +I+ S+ Q+ RL + F ++GK +L+ +DVA+RG+DI
Sbjct: 363 SELLVQAGYSVSKIYGSLDQEARLNEINNF--------RLGKTNLLVVTDVASRGIDIPL 414
Query: 587 IKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNP 646
+ +V++Y P V++HR GRTAR G + + +++ G L L+ L+ ++
Sbjct: 415 LANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDA-GYLLDLQLFLNRPLVTSS 473
Query: 647 RKTKWQND------VPMLPLEPDIVSQLRE 670
++ K +D + + L ++V++L E
Sbjct: 474 KQVKTDSDCDFTKQIVLGSLPQELVAELLE 503
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 156 bits (394), Expect = 1e-37
Identities = 135/449 (30%), Positives = 213/449 (47%), Gaps = 77/449 (17%)
Query: 219 EWSENMDLSFTVLKG---------LSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGK 269
++ ++ D SF LKG + +GFT TEIQ KS+ LKG +++G A TGSGK
Sbjct: 161 DYRDSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGK 220
Query: 270 TLAYGIPIIEQL--IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSL 327
TLA+ IP +E + ++ + + +I +PTREL+ Q L+++ + +T +
Sbjct: 221 TLAFLIPAVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAH----HHHTYGLV 276
Query: 328 TGGLSIQKQERILKYDGSG-RIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ 386
GG + Q + L G G I+VATPGR L+ L+ +PD + + + L++DE DR+L+
Sbjct: 277 MGGSNRQVESEKL---GKGINILVATPGRLLDHLQNSPDFL--YKNLQCLIIDEVDRILE 331
Query: 387 DGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKT 446
G +E ++I+ LL K R QTM+FSAT +T
Sbjct: 332 IGFEEELKQIINLLPKRR---------------QTMLFSAT-----------------QT 359
Query: 447 AGGENNEMEQVLNHLMKKIQFKSKPVIIDT--NPEHKVTSQVKESLIECLPMERDLYVYY 504
A E + K+ KS+P+ + N + +++ I C +R L ++
Sbjct: 360 ARIE----------ALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFT 409
Query: 505 FIMM-YPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKN 563
F+ +VF ++ SVK + N + + IH Q R +F N
Sbjct: 410 FLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQF-----CN 464
Query: 564 SKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICS 623
++ G IL+ +DVAARGLDI + ++ Y P YIHR GRTARG ++
Sbjct: 465 AESG---ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLM 521
Query: 624 PQESMGPLRKLRKVLSTKKSSNPRKTKWQ 652
E +G LR L+ + K N + WQ
Sbjct: 522 RPEELGFLRYLK---AAKVPLNEFEFSWQ 547
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 153 bits (387), Expect = 9e-37
Identities = 135/455 (29%), Positives = 224/455 (48%), Gaps = 88/455 (19%)
Query: 188 VTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQL 247
+TE +T D + + S D+ PV + E+ S ++ + + +PT IQ
Sbjct: 202 MTEQETTDYRQRLGIRVSGFDV---HRPV--KTFEDCGFSSQIMSAIKKQAYEKPTAIQC 256
Query: 248 KSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRS---IGLIFTPTRELAHQ 304
+++P+ L G +++G A TGSGKT A+ +P+I ++ R IG+I PTRELAHQ
Sbjct: 257 QALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQ 316
Query: 305 VTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNP 364
+ + K +K + ++ GG+S K E+ + I+VATPGR +++L+
Sbjct: 317 IFLEAK----KFSKAYGLRVSAVYGGMS--KHEQFKELKAGCEIVVATPGRLIDMLKMKA 370
Query: 365 DLIPRFAKIDTLVLDEADRLLQDGHFDEFE-KILKLLGKARKIKTSIDGKPTGSGWQTMI 423
+ R LVLDEADR+ G FE ++ ++G+ R + QT++
Sbjct: 371 LTMMR---ASYLVLDEADRMFDLG----FEPQVRSIVGQIRPDR------------QTLL 411
Query: 424 FSATFSLDLFTKLDKTSWKILK--------TAGGENNEMEQVLNHLMKKIQFKSKPVIID 475
FSAT K++K + +IL G N ++ QV+N +I
Sbjct: 412 FSATMP----WKVEKLAREILSDPIRVTVGEVGMANEDITQVVN-------------VIP 454
Query: 476 TNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNA--FLNNL 533
++ E L+E LP M+ G LVF + +V ++ A LN+
Sbjct: 455 SDAEK------LPWLLEKLPG----------MIDEGDVLVFASKKATVDEIEAQLTLNSF 498
Query: 534 KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHY 593
K+++ +H Q +R+ L+KFK G +LIA+DVAARGLDI +K V++Y
Sbjct: 499 KVAA--LHGDKDQASRMETLQKFKS--------GVHHVLIATDVAARGLDIKSLKTVVNY 548
Query: 594 HLPRSADVYIHRSGRTAR-GDNEGVSVMICSPQES 627
+ + D+++HR GRT R GD +GV+ + + +E+
Sbjct: 549 DIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREA 583
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 152 bits (385), Expect = 1e-36
Identities = 117/430 (27%), Positives = 209/430 (48%), Gaps = 71/430 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L +L G+ G+ +P+ IQ SI +AL G +I+ +A G+GKT AY IP+IE++
Sbjct: 46 EDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKI 105
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+ ++ PTRELA Q + ++ +++K + ++ TGG + ++ I++
Sbjct: 106 --QPALKAIQAMVIVPTRELALQTS----QICVELSKHIQLKVMVTTGGTDL--RDDIMR 157
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+G+ +++ATPGR L+L+E+ + + TLVLDEAD+LL ++++ L
Sbjct: 158 LNGTVHLVIATPGRILDLMEKG---VAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLP 214
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQV---- 457
K R Q M++SATF + + + K K E N ME++
Sbjct: 215 KER---------------QVMLYSATFPNTVTSFMQKHMHKPY-----EINLMEELTLLG 254
Query: 458 LNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFC 517
+ +Q K K ++T F + +++FC
Sbjct: 255 VTQYYAFVQEKQKVHCLNT---------------------------LFRKLQINQSIIFC 287
Query: 518 NAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDV 577
N+ V+ L + + S + IHS MAQ +R R F++ + +N L+ SD+
Sbjct: 288 NSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRN--------LVCSDL 339
Query: 578 AARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKV 637
RG+DI + V+++ PR+A+ Y+HR GR+ R + GV++ + + E LR++ +
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLIT-YEDRHTLRRIEQE 398
Query: 638 LSTKKSSNPR 647
L T+ P+
Sbjct: 399 LRTRIEPIPK 408
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 151 bits (382), Expect = 3e-36
Identities = 125/430 (29%), Positives = 211/430 (49%), Gaps = 66/430 (15%)
Query: 226 LSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL--IK 283
LS LKGL + TEIQ ++I LAL+G +++G A TGSGKTLA+ +P++E L ++
Sbjct: 76 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ 135
Query: 284 DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQ-ERILKY 342
TS D LI +PTRELA+Q + L+KV K + ++ + GG ++ + ERI
Sbjct: 136 WTSTDGLGVLIISPTRELAYQTFEVLRKV----GKNHDFSAGLIIGGKDLKHEAERI--- 188
Query: 343 DGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGK 402
+ I+V TPGR L+ ++ + LVLDEADR+L G D +++ L K
Sbjct: 189 -NNINILVCTPGRLLQHMDETVSF--HATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245
Query: 403 ARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLM 462
R QT++FSAT + ++ + +
Sbjct: 246 KR---------------QTLLFSAT----------------------QTKSVKDLARLSL 268
Query: 463 KKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY-PGTTLVFCNAID 521
K ++ V + ++ + ++++ I C ++ +Y F+ + ++VF ++
Sbjct: 269 KNPEY----VWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCK 324
Query: 522 SVKKLNAFLNNLK--ISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAA 579
V+ L L+ +S +H ++ ++R +E + E K + +L A+D+AA
Sbjct: 325 EVQYLYRVFCRLRPGVSILALH---GRQQQMRRMEVYNEFVRK-----RAAVLFATDIAA 376
Query: 580 RGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLS 639
RGLD + VL + P A+ YIHR+GRTAR +G +++I P E + L+K +
Sbjct: 377 RGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLLQKKVP 436
Query: 640 TKK-SSNPRK 648
K+ NP K
Sbjct: 437 VKEIKINPEK 446
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 150 bits (378), Expect = 1e-35
Identities = 137/467 (29%), Positives = 224/467 (47%), Gaps = 78/467 (16%)
Query: 179 NVKGEAGTVVTEDQTNDDLLQSNV---FSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLS 235
N E+ + +++ D+ +Q +V SS DI E ++ LS + K +
Sbjct: 55 NTSVESESEELDNENEDERVQKSVNLNASSTSDI---------EKFSDLQLSENIQKAIK 105
Query: 236 GLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL--IKDTSNDRSIGL 293
+GF TEIQ +SIP L G +++G A TGSGKTLA+ IP IE L +K + + +
Sbjct: 106 EMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI 165
Query: 294 IFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQ-ERILKYDGSGRIIVAT 352
I +PTRELA Q+ V ++ K + T + GG + + + ++++K ++VAT
Sbjct: 166 IISPTRELALQIFG----VAKELLKYHHQTFGIVIGGANRRAEADKLVK---GVNLLVAT 218
Query: 353 PGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDG 412
PGR L+ L+ + F + +LV+DEADR+L+ G DE +I+K+L +
Sbjct: 219 PGRLLDHLQNTKGFV--FRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENR------- 269
Query: 413 KPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKP- 471
QT++FSAT + TK++ + +I K P
Sbjct: 270 -------QTLLFSATQT----TKVED-----------------------LARISLKPGPL 295
Query: 472 -VIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMM-YPGTTLVFCNAIDSVKKLNAF 529
V +D+ +++ + +R L ++ F+ +VF ++ SVK +
Sbjct: 296 YVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAEL 355
Query: 530 LNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKH 589
LN + + +H Q+ R +F N++ G IL+ ++VAARGLDI +
Sbjct: 356 LNYIDLPVLDLHGKQKQQRRTNTFFEF-----CNAEKG---ILLCTNVAARGLDIPAVDW 407
Query: 590 VLHYHLPRSADVYIHRSGRTARG-DNEGVSVMICSPQESMGPLRKLR 635
++ Y P YIHR GRTARG G S+M +P E +G LR L+
Sbjct: 408 IVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSE-LGFLRYLK 453
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 149 bits (377), Expect = 1e-35
Identities = 124/405 (30%), Positives = 198/405 (48%), Gaps = 73/405 (18%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E++ + + KGL GF E+Q K IP+AL+GH+I+G + TG+GKTLA+ +P +++L
Sbjct: 7 EDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQRL 66
Query: 282 IK-DTSNDRSIG-LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS---LTGGLSIQKQ 336
+ +G L+ TPTRELA Q+ D L +++ KYT+LS + GGL + +
Sbjct: 67 VSLGWGGGDGLGCLVITPTRELALQIFDVL-------SRIAKYTVLSTGLIMGGL--EAE 117
Query: 337 ERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKI 396
+ +LK + I+V TPGR L+ L+ NP L A + L+LDEAD++++ G + E I
Sbjct: 118 DELLKVN-QMNILVCTPGRLLQHLQENPYL--STANVQILILDEADKMIEMGFKEVLEDI 174
Query: 397 LKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQ 456
L+ + + + QT++FSAT ++ +ILK
Sbjct: 175 LEYIPQKK---------------QTLLFSAT--------PKASTARILKL---------- 201
Query: 457 VLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTT-LV 515
P II E SQ+++ ++ Y++ FI P +V
Sbjct: 202 ------------EDPRIISIYKEEGFPSQLRQYFYMMRTGDKINYLHTFIGSNPEVKGIV 249
Query: 516 FCNAIDSVKKLNAFLNNLKISS--FQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILI 573
F + VK LK+ + F + M+QK R+ ++F + EKN IL
Sbjct: 250 FFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVK--EKNG------ILF 301
Query: 574 ASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
+D+ +RGLD + V+ Y P + + Y+HR GRTAR G S
Sbjct: 302 CTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGES 346
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 149 bits (376), Expect = 2e-35
Identities = 114/420 (27%), Positives = 208/420 (49%), Gaps = 62/420 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L +L G+ +G+ +P+ IQ +SIP+AL G +I+ +A G+GK+ AY IP++E+L
Sbjct: 88 EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL 147
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
D D ++ PTRELA QV+ +V M +++ TGG ++ ++ I++
Sbjct: 148 --DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAK---VMATTGGTNL--RDDIMR 200
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
D + +++ATPGR L+L+++ + + + +VLDEAD+LL E I+ L
Sbjct: 201 LDDTVHVVIATPGRILDLIKKG---VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 257
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
K R+I +++SATF L + ++ K + +L
Sbjct: 258 KNRQI---------------LLYSATFPLSVQKFMNSHLQKPYEI-------------NL 289
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAID 521
M+++ K T VT + K + CL F + +++FCN+
Sbjct: 290 MEELTLKGV-----TQYYAYVTERQK---VHCLNT-------LFSRLQINQSIIFCNSSQ 334
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
V+ L ++ L S F IH+ M Q++R R F+ +N L+ +D+ RG
Sbjct: 335 RVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRN--------LVCTDLFTRG 386
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
+DI + V+++ P+ A+ Y+HR GR+ R + G+++ + + + L+ + + L T+
Sbjct: 387 IDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFN-LKSIEEQLGTE 445
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 149 bits (375), Expect = 2e-35
Identities = 135/478 (28%), Positives = 211/478 (43%), Gaps = 87/478 (18%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + WS+ LS + ++ LG+ +PT IQ ++IP G +++G A TGSGKT+A+
Sbjct: 414 PKPVTSWSQ-CGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAF 472
Query: 274 GIPIIEQLIKDT----SNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTG 329
+P+ IKD + + I +I TPTRELA Q+ + KL G
Sbjct: 473 LLPMFRH-IKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL----KLLNIRACCAYG 527
Query: 330 GLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGH 389
G I+ Q LK I+V TPGR +++L N + + LVLDEADR+ G
Sbjct: 528 GAPIKDQIADLKR--GAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGF 585
Query: 390 FDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILK---- 445
+ +I+ + R QT++FSATF ++ + K+LK
Sbjct: 586 EPQVMRIINNIRPDR---------------QTVLFSATFP----RAMEALARKVLKKPVE 626
Query: 446 -TAGGEN---NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLY 501
T GG + +E+EQ I++ PE S++ E L E + D+
Sbjct: 627 ITVGGRSVVASEVEQ----------------IVEVRPEESKFSRLLELLGELYNNQLDV- 669
Query: 502 VYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSE 561
TLVF + +S L + L +S IH Q +R + +K
Sbjct: 670 ----------RTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK---- 715
Query: 562 KNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMI 621
G +LIA+ V ARGLD+ ++ V++Y P + Y+HR GRT R + GV+V
Sbjct: 716 ----AGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTF 771
Query: 622 CSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRERSKIASELA 679
+P++ + + K L K P++ + + SQ E+ K E A
Sbjct: 772 ITPEQEKYAV-DIAKALKMSKQPVPKELQ------------TLASQFLEKVKAGKEKA 816
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 148 bits (374), Expect = 3e-35
Identities = 123/448 (27%), Positives = 205/448 (45%), Gaps = 73/448 (16%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
D PP + + E M +L+GL G PT IQ++ IP L G +++G A TGSGKT
Sbjct: 174 DGIPPPIKSFKE-MKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKT 232
Query: 271 LAYGIPII------EQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTI 324
L + +P+I E+ + + + GLI P+RELA Q T + + + ++ + + +
Sbjct: 233 LVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQ-THGILEYYCRLLQEDSSPL 291
Query: 325 LSLT---GGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDT---LVL 378
L GG+S+++Q +++ ++VATPGR ++LL++ + +D L L
Sbjct: 292 LRCALCIGGMSVKEQMETIRH--GVHMMVATPGRLMDLLQK------KMVSLDICRYLAL 343
Query: 379 DEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDK 438
DEADR++ G FE G R I + G+ QT++FSAT + K
Sbjct: 344 DEADRMIDMG----FE------GDIRTIFSYFKGQR-----QTLLFSAT--------MPK 380
Query: 439 TSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMER 498
K+A KPV I+ + V + + +
Sbjct: 381 KIQNFAKSA--------------------LVKPVTINVGRAGAASLDVIQEVEYVKEEAK 420
Query: 499 DLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKE 558
+Y+ + P L+F V ++ +L + + IH Q+ R + +E F+E
Sbjct: 421 MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE 480
Query: 559 QSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
GK +L+A+DVA++GLD I+HV++Y +P + Y+HR GRT R N G++
Sbjct: 481 --------GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 532
Query: 619 VMICSPQESMGPLRKLRKVLSTKKSSNP 646
+ L L+ +L K P
Sbjct: 533 TTFINKACDESVLMDLKALLLEAKQKVP 560
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 148 bits (373), Expect = 4e-35
Identities = 126/464 (27%), Positives = 204/464 (43%), Gaps = 74/464 (15%)
Query: 207 VDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTG 266
V++ P E V++ ++ G+++PT +Q SIP L ++M A TG
Sbjct: 111 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTG 170
Query: 267 SGKTLAYGIPIIEQLIKD----------TSNDRS---IGLIFTPTRELAHQVTDHLQKVW 313
SGKT A+ +PII+ ++ T+ R+ L+ +PTRELA Q+ K
Sbjct: 171 SGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQI----HKEA 226
Query: 314 TKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKI 373
TK + + L GG ++++ + I++ATPGR ++++E+ A
Sbjct: 227 TKFSYKSNIQTAILYGGRE-NYRDQVNRLRAGTHILIATPGRLIDIIEQG---FIGLAGC 282
Query: 374 DTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLF 433
LVLDEADR+L G + KI+ G P + T +FSATF ++
Sbjct: 283 RYLVLDEADRMLDMGFEPQIRKIVG------------QGMPPKTARTTAMFSATFPKEI- 329
Query: 434 TKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIEC 493
++ K K + + + +++ L+
Sbjct: 330 --------------------------QVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWV 363
Query: 494 LPMERDLYVYYFIM--MYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLR 551
ME+ + +M LVF +L FLN +I S IH + Q R R
Sbjct: 364 NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 423
Query: 552 NLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTAR 611
NLE F+ G+ IL+A+ VAARGLDI ++HV++Y LP +D Y+HR GRT R
Sbjct: 424 NLELFRS--------GQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGR 475
Query: 612 GDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDV 655
N G++ + ++ G R L+ ++ SN +W + V
Sbjct: 476 CGNLGIATSFFN-DKNRGIGRDLKNLI---VESNQEVPEWLHQV 515
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 148 bits (373), Expect = 4e-35
Identities = 126/464 (27%), Positives = 204/464 (43%), Gaps = 74/464 (15%)
Query: 207 VDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTG 266
V++ P E V++ ++ G+++PT +Q SIP L ++M A TG
Sbjct: 108 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTG 167
Query: 267 SGKTLAYGIPIIEQLIKD----------TSNDRS---IGLIFTPTRELAHQVTDHLQKVW 313
SGKT A+ +PII+ ++ T+ R+ L+ +PTRELA Q+ K
Sbjct: 168 SGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQI----HKEA 223
Query: 314 TKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKI 373
TK + + L GG ++++ + I++ATPGR ++++E+ A
Sbjct: 224 TKFSYKSNIQTAILYGGRE-NYRDQVNRLRAGTHILIATPGRLIDIIEQG---FIGLAGC 279
Query: 374 DTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLF 433
LVLDEADR+L G + KI+ G P + T +FSATF ++
Sbjct: 280 RYLVLDEADRMLDMGFEPQIRKIVG------------QGMPPKTARTTAMFSATFPKEI- 326
Query: 434 TKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIEC 493
++ K K + + + +++ L+
Sbjct: 327 --------------------------QVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWV 360
Query: 494 LPMERDLYVYYFIM--MYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLR 551
ME+ + +M LVF +L FLN +I S IH + Q R R
Sbjct: 361 NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 420
Query: 552 NLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTAR 611
NLE F+ G+ IL+A+ VAARGLDI ++HV++Y LP +D Y+HR GRT R
Sbjct: 421 NLELFRS--------GQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGR 472
Query: 612 GDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDV 655
N G++ + ++ G R L+ ++ SN +W + V
Sbjct: 473 CGNLGIATSFFN-DKNRGIGRDLKNLI---VESNQEVPEWLHQV 512
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 147 bits (372), Expect = 5e-35
Identities = 138/457 (30%), Positives = 213/457 (46%), Gaps = 74/457 (16%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK-DTSND 288
+LK + GLGFT TEIQ KSI L+G +++ A TGSGKTLA+ +P IE L K +
Sbjct: 79 LLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQH 138
Query: 289 RSIG-LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGR 347
G +I +PTREL+ Q L ++ N LT GL + R + D +
Sbjct: 139 NGTGVIIVSPTRELSMQTYGVLSELLEGSN---------LTYGLVMGGSNRSAEKDKLAK 189
Query: 348 ---IIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKAR 404
I+VATPGR L+ L+ + + R K L++DEADR+L G E +++L+ L K R
Sbjct: 190 GVSILVATPGRLLDHLQNTDNFLVRNMK--CLIIDEADRILDIGFEIEMQQVLRHLPKQR 247
Query: 405 KIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKK 464
Q+M+FSAT S K+D+ + K
Sbjct: 248 ---------------QSMLFSATHS----PKVDE-----------------------LVK 265
Query: 465 IQFKSKPVIIDTN--PEHKVTSQVKESLIECLPMERDLYVYYFIMM-YPGTTLVFCNAID 521
+ S PV + + E +++ I +R L ++ F+ +VF ++ +
Sbjct: 266 LALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVFFSSCN 325
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
SVK + LN + I IH Q+ R +F + + IL+ +DVAARG
Sbjct: 326 SVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQ--------AETGILLCTDVAARG 377
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDN-EGVSVMICSPQESMGPLRKLRKVLST 640
LDI + ++ Y YIHR GRTARG N G ++++ P+E +G LR L+ +
Sbjct: 378 LDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEE-LGFLRYLK---AA 433
Query: 641 KKSSNPRKTKWQNDVPMLPLEPDIVSQLRERSKIASE 677
K + N + W + +++S+ +K A E
Sbjct: 434 KVTLNEFEFSWSKVANIQSQLENLISKNYYLNKSAKE 470
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 147 bits (371), Expect = 6e-35
Identities = 120/426 (28%), Positives = 190/426 (44%), Gaps = 63/426 (14%)
Query: 225 DLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD 284
DL ++ ++ G+ PT IQ SIP+ G ++M A TGSGKT A+ +PI+ +L++D
Sbjct: 251 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 310
Query: 285 TSN---DRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLT-GGLSIQKQERIL 340
R +I +PTRELA Q+ + +K Y + + GG S + Q +
Sbjct: 311 PHELELGRPQVVIVSPTRELAIQIFNEARKF-----AFESYLKIGIVYGGTSFRHQNECI 365
Query: 341 KYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
+++ATPGR L+ ++R F +VLDEADR+L G ++
Sbjct: 366 TR--GCHVVIATPGRLLDFVDRT---FITFEDTRFVVLDEADRMLDMGFSEDM------- 413
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNH 460
R+I T + +P QT++FSATF E++++
Sbjct: 414 ---RRIMTHVTMRPEH---QTLMFSATFP----------------------EEIQRMAGE 445
Query: 461 LMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAI 520
+K F + ++ S VK+++ E + + + T+VF
Sbjct: 446 FLKNYVFVAIGIV------GGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETK 499
Query: 521 DSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAAR 580
L +FL+ + + IH Q R + L FK S K +LIA+ VA+R
Sbjct: 500 RGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK--------VLIATSVASR 551
Query: 581 GLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLST 640
GLDI IKHV++Y +P D Y+HR GRT R N G + P++ L K+L
Sbjct: 552 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEG 611
Query: 641 KKSSNP 646
+ P
Sbjct: 612 SGQTVP 617
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 147 bits (370), Expect = 8e-35
Identities = 111/402 (27%), Positives = 186/402 (45%), Gaps = 62/402 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L +L G+ GF RP+ IQ +SIP+AL G +I+ +A G+GKT A+ IP +E++
Sbjct: 47 EDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKV 106
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
DT + LI PTRELA Q + + + MN ++ TGG ++ ++ I++
Sbjct: 107 --DTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN----VKVMVTTGGTTL--RDDIIR 158
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ + I+V TPGR L+L + + F++ T V+DEAD+LL E++L
Sbjct: 159 LNDTVHIVVGTPGRVLDLAGKG---VADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFP 215
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
K R+I ++SATF L + +DK HL
Sbjct: 216 KNRQIS---------------LYSATFPLIVKNFMDK---------------------HL 239
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAID 521
K + + + + CL F + +++FCN+ +
Sbjct: 240 NKPYEINLMDELTLRGVTQYYAFVDESQKVHCLNT-------LFSKLQINQSIIFCNSTN 292
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
V+ L + L S F H+ M Q +R R F+ +N L+ SD+ RG
Sbjct: 293 RVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRN--------LVCSDLLTRG 344
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICS 623
+DI + V+++ P++A+ Y+HR GR+ R + G+++ S
Sbjct: 345 IDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 147 bits (370), Expect = 8e-35
Identities = 121/415 (29%), Positives = 191/415 (45%), Gaps = 57/415 (13%)
Query: 207 VDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTG 266
+ + Q P + ++SE + L V+K + G+ PT IQ + P+A+ G N +G A TG
Sbjct: 128 ITVRGQVPNPIQDFSE-VHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTG 186
Query: 267 SGKTLAYGIPIIEQLIKDTS---NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYT 323
SGKTL Y +P I + D I L+ PTRELA Q+ Q+V T+ +
Sbjct: 187 SGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQI----QQVATEFGSSSYVR 242
Query: 324 ILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADR 383
+ GG Q R L+ I++ATPGR ++ L + R LVLDEADR
Sbjct: 243 NTCVFGGAPKGGQMRDLQR--GCEIVIATPGRLIDFLSAGSTNLKRCTY---LVLDEADR 297
Query: 384 LLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKI 443
+L G + KI+ + R QT+++SAT+ ++ +
Sbjct: 298 MLDMGFEPQIRKIVSQIRPDR---------------QTLMWSATWPKEVKQLAEDFLGNY 342
Query: 444 LKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVY 503
++ G +E NH ++++ +D E ++K L +
Sbjct: 343 IQINIGS---LELSANHNIRQV--------VDVCDEFSKEEKLKTLLSDI---------- 381
Query: 504 YFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKN 563
Y PG ++F V L F+ + + IH +Q R L +F+
Sbjct: 382 YDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRS----- 436
Query: 564 SKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
GK IL+A+DVAARGLD+ GIK+V+++ P++++ YIHR GRT R + +G S
Sbjct: 437 ---GKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTS 488
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 146 bits (369), Expect = 1e-34
Identities = 127/464 (27%), Positives = 221/464 (47%), Gaps = 65/464 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+ + L +V K + GF +PT IQ K+IP + G +++ + TGSGKT A+ IP++++L
Sbjct: 27 QQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKL 86
Query: 282 -IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERIL 340
+DT+ R+ L+ +PTRELA Q KV ++ + L GG I++Q +
Sbjct: 87 KRRDTTGIRA--LMVSPTRELALQTF----KVVKELGRFTGLRCACLVGGDQIEEQFSTI 140
Query: 341 KYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
+ I++ATPGR L ++ ++ R + + +V DEADRL + G D+ + LK +
Sbjct: 141 HENPD--ILLATPGRLLHVI---VEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRI 195
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFSLDL--FTKLDKTSWKILKTAGGEN------- 451
++R QT++FSAT L F K T +++ E
Sbjct: 196 PESR---------------QTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSM 240
Query: 452 -------NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYY 504
+E L HL + FK +++T+ + S+ K L++ + M+R+
Sbjct: 241 VFCMCRPDEKLFALLHLCRNFCFKK---LLETSLKKCKISKKKVPLLKKVRMDRE----- 292
Query: 505 FIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNS 564
T+VFC + V+ + L+ I ++S + R N++KF E+
Sbjct: 293 -----NKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQN--- 344
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
IL+ +DVAARG+DI + V++ H P A +++HR GR AR G ++ + +
Sbjct: 345 -----NILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIAN 399
Query: 625 QESMGPLRKLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQL 668
E + L L L + K++++ D ++ PD + L
Sbjct: 400 DE-LPYLTDLFMFLGKPINFASDKSEYKEDETLIGRVPDSIVSL 442
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 146 bits (368), Expect = 1e-34
Identities = 126/457 (27%), Positives = 200/457 (43%), Gaps = 95/457 (20%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++ LS LK + G+ T +Q ++P+ LKG +++ KA TG+GKT+A+ +P IE +
Sbjct: 57 DHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVV 116
Query: 282 IKD--TSNDRS----IGLIFTPTRELAHQVTDHLQKVWTKMNKLNKY----TILSLTGGL 331
+K TS D + L+ PTRELA+Q T+ N L KY + + GG
Sbjct: 117 VKSPPTSPDNKRPPILALVICPTRELANQAA-------TEANTLLKYHPSIGVQVVIGGT 169
Query: 332 SIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFD 391
+ +++ ++ + +I+VATPGR + +E P R + LVLDEAD LL G
Sbjct: 170 RLGLEQKRMQTNPC-QILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRK 228
Query: 392 EFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGEN 451
+ E+I+ + K R QT +FSAT
Sbjct: 229 DIERIISAVPKER---------------QTFLFSATVP---------------------- 251
Query: 452 NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVY-----YFI 506
E+ Q+ ++ +H+ + V E IE R +++ +F
Sbjct: 252 EEVRQI--------------CLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFS 297
Query: 507 MMY-----------PGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEK 555
++Y +VFC K + L L ++ +IHS Q R R +
Sbjct: 298 LLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNE 357
Query: 556 FKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNE 615
F++ K IL+ SDV+ARG+D + VL LP+ + YIHR GRT R E
Sbjct: 358 FRK--------SKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKE 409
Query: 616 GVSVMICSPQES--MGPLRKLRKVLSTKKSSNPRKTK 650
G +++ +P E + L+ L S S +P K
Sbjct: 410 GEGILLLAPWEEYFLSSLKDLPITKSPLPSIDPETVK 446
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 145 bits (367), Expect = 2e-34
Identities = 117/413 (28%), Positives = 191/413 (45%), Gaps = 63/413 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+++ LS + + L + T+PT IQ IP L+G + +G A TGSGKT+A+ P++ +
Sbjct: 5 KSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKW 64
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+D S G++ TPTRELA Q+ + + + MN + + GG SI +Q L
Sbjct: 65 SEDPSG--MFGVVLTPTRELAMQIAEQFTALGSSMN----IRVSVIVGGESIVQQ--ALD 116
Query: 342 YDGSGRIIVATPGRFL-ELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
I+ATPGR ++ D + + LVLDEAD LL D
Sbjct: 117 LQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADH-------- 168
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNH 460
+ T I P QT++F+AT + +QV +
Sbjct: 169 -----LATCISALPPKDKRQTLLFTATIT-------------------------DQVKSL 198
Query: 461 LMKKIQFKSKPVI----IDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYP---GTT 513
+Q K KP + +++ + S +K I ++ Y+Y + T
Sbjct: 199 QNAPVQ-KGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLTCEEYENKTA 257
Query: 514 LVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILI 573
++F N + + L L L++ +HS M Q+ R +L +F+ + + ILI
Sbjct: 258 IIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAAR--------ILI 309
Query: 574 ASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
A+DVA+RGLDI ++ V++Y +P DV+IHRSGRTAR G ++ + ++
Sbjct: 310 ATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRD 362
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 145 bits (365), Expect = 3e-34
Identities = 127/412 (30%), Positives = 195/412 (46%), Gaps = 66/412 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E++ LS K + +GF R T+IQ K+IP + G +++G A TGSGKTLA+ IP +E L
Sbjct: 157 ESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELL 216
Query: 282 --IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERI 339
+K T + + L+ PTRELA Q V ++ K + T+ + GG + + I
Sbjct: 217 YRVKFTPRNGTGVLVICPTRELAIQ----SYGVAKELLKYHSQTVGKVIGGEKRKTEAEI 272
Query: 340 LKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKL 399
L ++VATPGR L+ LE I F + LV+DEADR+L+ ++ +KIL L
Sbjct: 273 LA--KGVNLLVATPGRLLDHLENTNGFI--FKNLKFLVMDEADRILEQNFEEDLKKILNL 328
Query: 400 LGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLN 459
L K R QT +FSAT S K++ + L
Sbjct: 329 LPKTR---------------QTSLFSATQS----AKVEDLARVSL--------------- 354
Query: 460 HLMKKIQFKSKPVIIDTNPEHK-VTSQVKESLIECLPME-RDLYVYYFIMMYPG--TTLV 515
+ PV ID + K VT++ E +P R L++ F+ + G +V
Sbjct: 355 ---------TSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMV 405
Query: 516 FCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIAS 575
F + S K +K +I + Q R +F + + IL+ +
Sbjct: 406 FFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIK--------AETGILLCT 457
Query: 576 DVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDN-EGVSVMICSPQE 626
+VAARGLD + ++ Y P + YIHR GRTARG+ +G ++++ +PQE
Sbjct: 458 NVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQE 509
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 144 bits (364), Expect = 4e-34
Identities = 127/441 (28%), Positives = 195/441 (43%), Gaps = 74/441 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+ LS LKG+ GF T +Q ++PL L+G +I+ KA TG+GKT+A+ +P IE +
Sbjct: 83 DQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAV 142
Query: 282 IK------DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKY----TILSLTGGL 331
IK D + I L+ PTRELA Q + N L KY + + GG
Sbjct: 143 IKAPPASRDNRHPPIIVLVVCPTRELACQAA-------AEANILLKYHPSIGVQVVIGGT 195
Query: 332 SIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFD 391
+ ++R L+ +I+VATPGR + ++ R + LVLDEAD LL G
Sbjct: 196 KLPTEQRRLQ-KSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRR 254
Query: 392 EFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGEN 451
E E+I+ + K R QT +FSAT S
Sbjct: 255 EIERIIAAVPKQR---------------QTFLFSATVS---------------------- 277
Query: 452 NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPG 511
+E+ Q+ + +K+ V H+ SQ + ++R + Y ++
Sbjct: 278 DEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQ----MYMIASLDRHFSLLYGLLKKHI 333
Query: 512 T------TLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSK 565
T ++FC + + L L ++ +IHS Q R R ++F++
Sbjct: 334 TDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRK------- 386
Query: 566 VGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQ 625
K IL+ SDV+ARG+D + V+ LP + YIHR GRT R EG V++ +P
Sbjct: 387 -SKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPW 445
Query: 626 ESMGPLRKLRKVLSTKKSSNP 646
E L ++ + TK S P
Sbjct: 446 EEYF-LSSVKDLPITKSSLPP 465
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 144 bits (364), Expect = 4e-34
Identities = 131/420 (31%), Positives = 199/420 (47%), Gaps = 65/420 (15%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
D PP + ++E +DL + + + +PT +Q +IP+ L+G ++M A TGSGKT
Sbjct: 152 DNVPPPVNTFAE-IDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKT 210
Query: 271 LAYGIPIIEQLIKDTSNDRSIG--------LIFTPTRELAHQVTDHLQKVWTKMNKLNKY 322
A+ PII ++KD R G +I +PTRELA Q+ D +K +
Sbjct: 211 AAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKK----FSYQTGV 266
Query: 323 TILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEAD 382
++ GG I +Q R L+ I+VATPGR +LLER I L LDEAD
Sbjct: 267 KVVVAYGGTPINQQLRELERGVD--ILVATPGRLNDLLERAR---VSMQMIRFLALDEAD 321
Query: 383 RLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWK 442
R+L G FE + RKI +D P G QT++FSATF ++
Sbjct: 322 RMLDMG----FEP------QIRKIVEQMDMPPRGVR-QTLLFSATFPREI---------- 360
Query: 443 ILKTAGGENNEMEQVLNHLMKKI-QFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLY 501
+ + + N++ + + S +I E + S + L++ L +R+
Sbjct: 361 -------QRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRE-- 411
Query: 502 VYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSF---QIHSSMAQKNRLRNLEKFKE 558
I TLVF +++ + ++ N L I+ F IH Q+ R L+ FK
Sbjct: 412 --NGIQGKQALTLVF---VETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKS 466
Query: 559 QSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
G+ IL+A+DVAARGLDI + HV+++ LP D Y+HR GRT R G++
Sbjct: 467 --------GRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA 518
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 144 bits (364), Expect = 4e-34
Identities = 117/409 (28%), Positives = 193/409 (46%), Gaps = 63/409 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M L F ++KG++ G+ PT IQ K+IPL L+G +++ A TGSGKT + IP+ E+L
Sbjct: 98 QSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL 157
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+ + LI +PTRELA Q K ++ + + + + GG S+ Q +
Sbjct: 158 QRREPTKGARALILSPTRELAVQT----YKFIKELGRFMELKSILVLGGDSMDSQFSAI- 212
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+IVATPGRFL L ++ + I+ +V DEADRL + G ++ + L L
Sbjct: 213 -HTCPDVIVATPGRFLHLC---VEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLP 268
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
+R QT++FSAT KL +++ A N+
Sbjct: 269 SSR---------------QTVMFSAT-----LPKL------LVEFARAGLND-------- 294
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERD---LYVYYFIMMYPGTTLVFCN 518
PV+I + E K+ + + C P +R + + +++ T+VF
Sbjct: 295 ---------PVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVQSQTVVFAG 345
Query: 519 AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
V+ ++ L IS+ ++SS+ R N KF + K ++LI +DVA
Sbjct: 346 TQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNK--------KVSVLIVTDVA 397
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
ARG+DI + V++ H P +++HR GR AR G + I S ++
Sbjct: 398 ARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDT 446
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 144 bits (363), Expect = 5e-34
Identities = 114/412 (27%), Positives = 194/412 (46%), Gaps = 71/412 (17%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + W + +S +L L G+ +PT IQ ++IP + G +++G A TGSGKT+A+
Sbjct: 368 PKPIKSWVQ-CGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAF 426
Query: 274 GIPIIEQLIKDTS---NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGG 330
+P+ ++ S + I +I TPTRELA Q+T K K +K ++ + GG
Sbjct: 427 LLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQIT----KECKKFSKTLGLRVVCVYGG 482
Query: 331 LSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHF 390
I E+I + IIV TPGR +++L N + ++ +VLDEADR+ G
Sbjct: 483 TGI--SEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG-- 538
Query: 391 DEFE-KILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGG 449
FE ++++++ R + QT++FSATF
Sbjct: 539 --FEPQVMRIVDNVRPDR------------QTVMFSATFP-------------------- 564
Query: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY 509
ME + ++ SKP+ + V S V++ +I ++ L + + Y
Sbjct: 565 --RAMEALARRIL------SKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHY 616
Query: 510 --PGTTLVFCNAIDSVKKLNAFLNNLKISSF---QIHSSMAQKNRLRNLEKFKEQSEKNS 564
G+ ++F +D + + L +L +S+ +H + Q +R + FK
Sbjct: 617 QESGSVIIF---VDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN------ 667
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG 616
G +L+A+ VAARGLD+ + V++Y P + Y+HR+GRT R N+G
Sbjct: 668 --GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKG 717
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 144 bits (362), Expect = 7e-34
Identities = 129/480 (26%), Positives = 210/480 (42%), Gaps = 87/480 (18%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
++E V+ ++E + + ++K LG+ P++IQ +++P AL+G +++G A TGSGKT
Sbjct: 2 EEENEVVKTFAE-LGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKT 60
Query: 271 LAYGIPIIEQLIKDTSNDRS----------IGLIFTPTRELAHQVTDHLQKVWTKMNKLN 320
A+ IPI++ L++ + + +PTRELA Q+ + + + ++
Sbjct: 61 GAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS--- 117
Query: 321 KYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDE 380
L GG+ +Q L R VATPGR + + + K LVLDE
Sbjct: 118 -LRCAVLVGGIDRMQQTIAL----GKRPHVATPGRLWDHMSDTKGFSLKSLKY--LVLDE 170
Query: 381 ADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTS 440
ADRLL + +IL+ + RK T +FSAT + K+ K
Sbjct: 171 ADRLLNEDFEKSLNQILEEIPLERK---------------TFLFSATMT----KKVRKLQ 211
Query: 441 WKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDL 500
L+ PV I+ ++ +K+ +D
Sbjct: 212 RACLR------------------------NPVKIEAASKYSTVDTLKQQYRFVAAKYKDC 247
Query: 501 YVYYFIMMYP-GTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQ 559
Y+ Y + P T+++F D + L L +L + I M Q RL L KF
Sbjct: 248 YLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF--- 304
Query: 560 SEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSV 619
K G+ IL+ +DVA+RGLDI + V++Y +P ++ YIHR GRTAR GV +
Sbjct: 305 -----KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGI 359
Query: 620 MICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRERSKIASELA 679
+ + E + ++ K++ K +P P E D V L ER A +L+
Sbjct: 360 SLVNQYELEWYI-QIEKLIGKK-------------LPEYPAEEDEVLSLLERVAEAKKLS 405
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 143 bits (361), Expect = 9e-34
Identities = 117/413 (28%), Positives = 198/413 (47%), Gaps = 73/413 (17%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK 283
+ +S ++K LS G + IQ + A++G +++G+A TG+GKTLA+GIPII+++IK
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 284 DTSND----RSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERI 339
+ + L+ PTRELA QV ++ ++ + Y GG I +Q R
Sbjct: 169 YNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLY------GGTPIGQQMRQ 222
Query: 340 LKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKL 399
L Y + V TPGR ++L++R +++ +VLDEAD++LQ G ++ E IL+
Sbjct: 223 LDYGVD--VAVGTPGRVIDLMKRG---ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEK 277
Query: 400 LGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLN 459
L + R Q+M+FSAT SW +
Sbjct: 278 LPEKR---------------QSMMFSATM----------PSW----------------IR 296
Query: 460 HLMKKIQFKSKPVIIDT--NPEHKVTSQVKESLIECLPMERDLYVYYFIMMYP--GTTLV 515
L KK + + P+ +D + + K+ + I R + + + G +V
Sbjct: 297 SLTKK--YLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIV 354
Query: 516 FCNAIDSVKKLN-AFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
F +L+ A + K + +H ++Q R R L F++ G IL+A
Sbjct: 355 FTQTKRDADRLSYALARSFKCEA--LHGDISQSQRERTLAGFRD--------GHFNILVA 404
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
+DVAARGLD+ + ++HY LP + + ++HR+GRT R +G +++I S +S
Sbjct: 405 TDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQS 457
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 143 bits (361), Expect = 9e-34
Identities = 125/432 (28%), Positives = 200/432 (45%), Gaps = 70/432 (16%)
Query: 211 DQEPP-----VLPEWSE-NMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKAS 264
D PP LP +SE LS +++ L GF T +Q ++IP +++ A+
Sbjct: 2 DSSPPKTITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAA 61
Query: 265 TGSGKTLAYGIPIIEQLIKDTSND----RSIGLIFTPTRELAHQVTDHLQKVWTKMNKLN 320
TGSGKTLA+ +P IE + + S + +G+I +PTREL+ Q+ + + + +N
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVN 121
Query: 321 KYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDE 380
+ L GG ++ L+ +G+ +++ TPGR ++++R L F ++ L+LDE
Sbjct: 122 S---VLLVGGREVEADMNTLEEEGAN-LLIGTPGRLSDMMKRMEFL--DFRNLEILILDE 175
Query: 381 ADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTS 440
ADRLL G + I+ L K R+ T +FSAT +T
Sbjct: 176 ADRLLDMGFQKQVNYIISRLPKQRR---------------TGLFSAT----------QTQ 210
Query: 441 WKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDL 500
G N ME VI + K +S + ++C ++
Sbjct: 211 AVADLAKAGLRNAME----------------VISGAESKSKTSSGLYCEYLKCEADQKSS 254
Query: 501 YVYYFIMMYPGTTLVF----CNAIDSVKKLNAFLNNLK-ISSFQIHSSMAQKNRLRNLEK 555
+ + ++ LV C +D + + + LK IS F H M QK R L
Sbjct: 255 QLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALAS 314
Query: 556 FKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNE 615
F E S +L+ +DVAARGLDI GI +V+ Y P+ DV+IHR GRTAR + +
Sbjct: 315 FTEASSG--------VLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQ 366
Query: 616 GVSVMICSPQES 627
G +++ P+E+
Sbjct: 367 GRAIVFLMPKET 378
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 143 bits (360), Expect = 1e-33
Identities = 119/403 (29%), Positives = 194/403 (47%), Gaps = 66/403 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E S V+ L GF+ PT IQ + P+AL G +++G A TGSGKTL++ +P +
Sbjct: 90 EEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVH- 148
Query: 282 IKDTS----NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQE 337
KD D I L+ PTREL Q+ +KV + + ++ GG S Q Q
Sbjct: 149 AKDQQPLRRGDGPIVLVLAPTRELVMQI----KKVVDEFCGMFNLRSTAVYGGASSQPQI 204
Query: 338 RILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKIL 397
R L ++G+ +++ATPGR ++L ++ + R + LVLDEADR+L G + KI+
Sbjct: 205 RAL-HEGA-EVVIATPGRLIDLHDQGHAPLSR---VTFLVLDEADRMLDMGFEPQLRKII 259
Query: 398 KLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQV 457
T + QT+++SAT+ ++ E
Sbjct: 260 ---------------PKTNANRQTLMWSATWPREV------------------RGLAESY 286
Query: 458 LNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPG-TTLVF 516
+N ++ ++ N E K S++K+ + C E++ + + + G +VF
Sbjct: 287 MNEYIQ---------VVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGDKVIVF 337
Query: 517 CNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASD 576
CN + L LN + +H +Q R + L+ F+ G+ ILIA++
Sbjct: 338 CNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRS--------GRRPILIATE 389
Query: 577 VAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGD-NEGVS 618
VA RGLD++ +K V+++ P S + Y+HR GRTARG+ EG+S
Sbjct: 390 VAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGIS 432
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 143 bits (360), Expect = 1e-33
Identities = 117/426 (27%), Positives = 192/426 (44%), Gaps = 74/426 (17%)
Query: 238 GFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPII------EQLIKDTSNDRSI 291
G PT IQ++ IP+AL G +++G ASTGSGKT+ + +P++ E + ++
Sbjct: 209 GIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPF 268
Query: 292 GLIFTPTRELAHQVTDHLQKVWTKMNK--LNKYTILSLTGGLSIQKQERILKYDGSGRII 349
GLI P+RELA Q+ D + +++ + K L + GG+ I +Q + ++ DG I+
Sbjct: 269 GLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVR-DGI-HIV 326
Query: 350 VATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTS 409
VATPGR ++L + I LVLDEADR+L G DE + I R
Sbjct: 327 VATPGRLSDMLTKK---IINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQR----- 378
Query: 410 IDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKS 469
QT++FSAT + +KIQF +
Sbjct: 379 ----------QTLLFSAT---------------------------------MPRKIQFFA 395
Query: 470 -----KPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVK 524
KP++++ + V + L + + V + L+F V
Sbjct: 396 KSALVKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQKTSPKVLIFAEKKVDVD 455
Query: 525 KLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDI 584
+ +L + IH Q +R +E F+ KN K +L+A+DVA++GLD
Sbjct: 456 NIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFR----KNEK----DVLVATDVASKGLDF 507
Query: 585 SGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSS 644
GI+HV+++ +P + Y+HR GRT R +G++ + + M L L+++L+
Sbjct: 508 QGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQE 567
Query: 645 NPRKTK 650
P K
Sbjct: 568 LPEFLK 573
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 143 bits (360), Expect = 1e-33
Identities = 135/466 (28%), Positives = 210/466 (44%), Gaps = 59/466 (12%)
Query: 187 VVTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENM---DLSFTVLKGLSGLGFTRPT 243
V + ++ L+ + F + V I + PV + + +L T+ K ++ G+T+ T
Sbjct: 517 VFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTT 576
Query: 244 EIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTS-NDRSIG------LIFT 296
IQ ++PL +GH+IM A TGSGKT A+ +PI+ +LI + N G +I T
Sbjct: 577 PIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILT 636
Query: 297 PTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRF 356
PTREL TD + K I + GGL++ + + + IIV T GR
Sbjct: 637 PTREL----TDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKG--QIEKGATIIVGTVGRI 690
Query: 357 LELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSI--DGKP 414
E + K VLDEADR++ +G I T + + P
Sbjct: 691 KHFCEEGTI---KLDKCRFFVLDEADRMID------------AMGFGTDIDTIVNYESMP 735
Query: 415 TGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVII 474
QT++FSATF + N+ E + + KI +K V+
Sbjct: 736 KKENRQTLMFSATFPDSV-------------QEAARNHLKEGYIMLAIDKIGAANKCVLQ 782
Query: 475 DTNPEHKVTSQVKESLIECLPMERDLYVYYFIM-MYPGTTLVFCNAIDSVKKLNAFLNNL 533
+ E S+ K+ L+E L ++ D Y +Y T+VF + L + L++
Sbjct: 783 EF--EKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSA 840
Query: 534 KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHY 593
++ + IH + Q+ R L +F+ G +LIA+ VA RGLDI G+ HV++Y
Sbjct: 841 QVPAITIHGAREQRERSEALRQFRN--------GSKPVLIATAVAERGLDIKGVDHVINY 892
Query: 594 HLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLS 639
+P + D YIHR GRT R N G + S E L +L +VLS
Sbjct: 893 DMPDNIDDYIHRIGRTGRVGNAGRATSFIS--EDCNLLSELVRVLS 936
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 143 bits (360), Expect = 1e-33
Identities = 109/407 (26%), Positives = 202/407 (48%), Gaps = 66/407 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L +LKG+ GF +P+ IQ +SIP+AL G +I+ +A G+GKT A+ IP++E++
Sbjct: 127 EDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI 186
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
D +N+ +I PTRELA Q + +V +++K ++ TGG S+ ++ I++
Sbjct: 187 --DPNNNVIQAMILVPTRELALQTS----QVCKELSKYLNIQVMVTTGGTSL--RDDIMR 238
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
++V TPGR L+L ++ ++ A LV+DEAD+LL E++++ L
Sbjct: 239 LHQPVHLLVGTPGRILDLTKKGVCVLKDCA---MLVMDEADKLLSAEFQPSLEELIQFLP 295
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
+ R Q ++FSATF + + D+ HL
Sbjct: 296 QNR---------------QFLMFSATFPVTVKAFKDR---------------------HL 319
Query: 462 MKK--IQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNA 519
K I + ++ + + ++ + CL F + +++FCN+
Sbjct: 320 RKPYVINLMDQLTLMGVTQYYAFVEERQK--VHCLNT-------LFSKLQINQSIIFCNS 370
Query: 520 IDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAA 579
++ V+ L + L S F IH+ M Q +R R +F+ + +N L+ +D+
Sbjct: 371 VNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRN--------LVCTDLFT 422
Query: 580 RGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
RG+DI + V+++ PR+++ Y+HR GR+ R + G++V + + ++
Sbjct: 423 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYED 469
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 143 bits (360), Expect = 1e-33
Identities = 129/421 (30%), Positives = 200/421 (46%), Gaps = 67/421 (15%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
D PP + ++E +DL + + + +PT +Q +IP+ G ++M A TGSGKT
Sbjct: 139 DNVPPPVNTFAE-IDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKT 197
Query: 271 LAYGIPIIEQLIKDTSNDRSIG--------LIFTPTRELAHQVTDHLQKVWTKMNKLNKY 322
A+ PII ++KD +R G +I +PTRELA Q+ D + K +
Sbjct: 198 AAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEAR----KFSYQTGV 253
Query: 323 TILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEAD 382
++ GG + +Q R L + I+VATPGR +LLER + L LDEAD
Sbjct: 254 KVVVAYGGTPVNQQIREL--ERGVDILVATPGRLNDLLERGR---VSLQMVRFLALDEAD 308
Query: 383 RLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDL-FTKLDKTSW 441
R+L G FE + RKI +D P G QTM+FSATF ++ D S
Sbjct: 309 RMLDMG----FEP------QIRKIVQQMDMPPPGVR-QTMLFSATFPREIQRLASDFLSN 357
Query: 442 KILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID-TNPEHKVTSQVKESLIECLPMERDL 500
I G + + ++ + + ++D + + + +Q K++L
Sbjct: 358 YIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQAL---------- 407
Query: 501 YVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSF---QIHSSMAQKNRLRNLEKFK 557
TLVF +++ K ++ N L I+ F IH +Q+ R
Sbjct: 408 ------------TLVF---VETKKGADSLENWLCINGFPATTIHGDRSQQER-------- 444
Query: 558 EQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGV 617
E + ++ K G+ IL+A+DVAARGLDI + HV+++ LP D Y+HR GRT R N G+
Sbjct: 445 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGL 504
Query: 618 S 618
+
Sbjct: 505 A 505
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 142 bits (359), Expect = 2e-33
Identities = 119/428 (27%), Positives = 202/428 (46%), Gaps = 68/428 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M+L +L+G+ G GF P+ IQ ++I ++GH+++ +A +G+GKT + I ++++
Sbjct: 25 DDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 84
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
DTS L+ PTRELA Q+ QKV + + + GG S + L+
Sbjct: 85 --DTSVKAPQALMLAPTRELALQI----QKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 138
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+I+V TPGR + ++R R KI +LDEAD +L G ++ +I LL
Sbjct: 139 ---DAQIVVGTPGRVFDNIQRRRF---RTDKIKMFILDEADEMLSSGFKEQIYQIFTLL- 191
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
PT Q ++ SAT N++ +V
Sbjct: 192 -----------PPT---TQVVLLSATMP----------------------NDVLEVTTKF 215
Query: 462 MK---KIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCN 518
M+ +I K + ++ + V + +E ECL DLY + ++FCN
Sbjct: 216 MRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECL---TDLYDSISVTQ----AVIFCN 268
Query: 519 AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
V++L L N K + I+S + Q+ R +++F+ G ILI++D+
Sbjct: 269 TRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--------GSSRILISTDLL 320
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVL 638
ARG+D+ + V++Y LP + + YIHR GR R +GV++ + E +G +R+L K
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAMRELEKFY 379
Query: 639 STKKSSNP 646
ST+ P
Sbjct: 380 STQIEELP 387
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 142 bits (359), Expect = 2e-33
Identities = 119/428 (27%), Positives = 202/428 (46%), Gaps = 68/428 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M+L +L+G+ G GF P+ IQ ++I ++GH+++ +A +G+GKT + I ++++
Sbjct: 25 DDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 84
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
DTS L+ PTRELA Q+ QKV + + + GG S + L+
Sbjct: 85 --DTSVKAPQALMLAPTRELALQI----QKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 138
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+I+V TPGR + ++R R KI +LDEAD +L G ++ +I LL
Sbjct: 139 ---DAQIVVGTPGRVFDNIQRRRF---RTDKIKMFILDEADEMLSSGFKEQIYQIFTLL- 191
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
PT Q ++ SAT N++ +V
Sbjct: 192 -----------PPT---TQVVLLSATMP----------------------NDVLEVTTKF 215
Query: 462 MK---KIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCN 518
M+ +I K + ++ + V + +E ECL DLY + ++FCN
Sbjct: 216 MRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECL---TDLYDSISVTQ----AVIFCN 268
Query: 519 AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
V++L L N K + I+S + Q+ R +++F+ G ILI++D+
Sbjct: 269 TRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--------GSSRILISTDLL 320
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVL 638
ARG+D+ + V++Y LP + + YIHR GR R +GV++ + E +G +R+L K
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAMRELEKFY 379
Query: 639 STKKSSNP 646
ST+ P
Sbjct: 380 STQIEELP 387
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 142 bits (358), Expect = 2e-33
Identities = 121/410 (29%), Positives = 188/410 (45%), Gaps = 62/410 (15%)
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIG---LIF 295
FT PT IQ + PLAL G +++G A TGSGKTLAY +P I + +R G L+
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 171
Query: 296 TPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGR 355
PTRELA QV Q+V K ++ + GG K +I + I +ATPGR
Sbjct: 172 APTRELAQQV----QQVADDYGKCSRLKSTCIYGGAP--KGPQIRDLERGVEICIATPGR 225
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
++ LE + R LVLDEADR+L G + KI+ + R
Sbjct: 226 LIDFLESGKTNLRRCTY---LVLDEADRMLDMGFEPQIRKIVDQIRPDR----------- 271
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID 475
QT+++SAT+ ++ + + G +E NH + +I V ++
Sbjct: 272 ----QTLMWSATWPKEVRQLAEDFLRDYTQINVGN---LELSANHNILQIV----DVCME 320
Query: 476 TNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKI 535
+ +HK+ ++E + E T++F L +
Sbjct: 321 SEKDHKLIQLMEEIMAE----------------KENKTIIFVETKRRCDDLTRRMRRDGW 364
Query: 536 SSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHL 595
+ IH +Q R L +F+ GK ILIA+DVA+RGLD+ +K V++Y
Sbjct: 365 PAMCIHGDKSQPERDWVLNEFRS--------GKAPILIATDVASRGLDVEDVKFVINYDY 416
Query: 596 PRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSN 645
P S++ Y+HR GRTAR N+G + +P G L++ R+++ + +N
Sbjct: 417 PNSSEDYVHRIGRTARSTNKGTAYTFFTP----GNLKQARELIKVLEEAN 462
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 142 bits (357), Expect = 3e-33
Identities = 130/468 (27%), Positives = 223/468 (46%), Gaps = 72/468 (15%)
Query: 192 QTNDDLLQSNVFSS--NVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKS 249
QT DD N + S N++ + P + LS VL + GF +PT IQ K+
Sbjct: 112 QTGDDEDDVNEYFSTNNLEKTKHKKGSFPSFG----LSKIVLNNIKRKGFRQPTPIQRKT 167
Query: 250 IPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHL 309
IPL L+ +I+G A TGSGKT A+ +P++E+L + + +I +P+RELA Q T ++
Sbjct: 168 IPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQ-TFNV 226
Query: 310 QKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLEL-LERNPDLIP 368
K + + +L + LTGG S+++Q ++ + +I+ATPGRFL L +E N DL
Sbjct: 227 FKDFARGTELRS---VLLTGGDSLEEQFGMMMTNPD--VIIATPGRFLHLKVEMNLDL-- 279
Query: 369 RFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATF 428
++ +V DEADRL + G ++ ++L L R QT++FSAT
Sbjct: 280 --KSVEYVVFDEADRLFEMGFQEQLNELLASLPTTR---------------QTLLFSATL 322
Query: 429 ------------------SLDLFTKLDKTSWKILKTAGGENNE------MEQVL------ 458
LD TK+ + + ++ + E +++++
Sbjct: 323 PNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLAT 382
Query: 459 NHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCN 518
+ ++K+Q + D++ E+ Q K + + + T++F
Sbjct: 383 SEQLQKLQNSNNEADSDSDDEN--DRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVP 440
Query: 519 AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
V+ ++ L + I+ ++ Q R R L F + G +IL+ +DVA
Sbjct: 441 TRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNF--------RAGLTSILVVTDVA 492
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
ARG+DI + +V++Y LP S+ +++HR GRTAR N+G + I + E
Sbjct: 493 ARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENE 540
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 142 bits (357), Expect = 3e-33
Identities = 115/423 (27%), Positives = 200/423 (47%), Gaps = 71/423 (16%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + W++ +S ++ L LGF +PT IQ ++IP + G +++G A TGSGKTLA+
Sbjct: 506 PKPIKTWAQ-CGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAF 564
Query: 274 GIPIIEQLIKDTS---NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGG 330
+P+ ++ S D +I +I PTREL Q+ ++K +K + + GG
Sbjct: 565 ILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRK----FSKSLGLRPVCVYGG 620
Query: 331 LSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHF 390
I +Q LK IIV TPGR +++L N + ++ +VLDEADR+ G
Sbjct: 621 TGISEQIAELKR--GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG-- 676
Query: 391 DEFE-KILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGG 449
FE ++++++ R + QT++FSATF
Sbjct: 677 --FEPQVMRIIDNVRPDR------------QTVMFSATFP-------------------- 702
Query: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY 509
+ME + ++KK P+ + V +V++ ++ + + + +Y
Sbjct: 703 --RQMEALARRILKK------PIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIY 754
Query: 510 P--GTTLVFCNAIDSVKKLNAFLNNLKISSF---QIHSSMAQKNRLRNLEKFKEQSEKNS 564
G+ +VF +D + + L +L +S+ +H + Q +R + FK
Sbjct: 755 QEAGSIIVF---VDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKS------ 805
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
GK +LIA+ VAARGLD+ + V++Y +P + Y+HR GRT R +G + +P
Sbjct: 806 --GKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITP 863
Query: 625 QES 627
++S
Sbjct: 864 EQS 866
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 141 bits (356), Expect = 3e-33
Identities = 125/460 (27%), Positives = 208/460 (45%), Gaps = 74/460 (16%)
Query: 207 VDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTG 266
V+ DD PP+ + ++M VL L G +PT IQ++ +P+ L G +++G A TG
Sbjct: 136 VNGDDIPPPI--KNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTG 193
Query: 267 SGKTLAYGIPII------EQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLN 320
SGKTL + +P+I E ++ + + IGLI P+RELA Q + +++ + +
Sbjct: 194 SGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAG 253
Query: 321 KYTILSL--TGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVL 378
+ SL GG+ ++ Q ++K I+VATPGR ++L + + L L
Sbjct: 254 YPPLRSLLCIGGIDMRSQLEVVK--RGVHIVVATPGRLKDMLAKKKMSLD---ACRYLTL 308
Query: 379 DEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATF--SLDLFTK- 435
DEADRL+ G D+ ++ R QT++FSAT + +F +
Sbjct: 309 DEADRLVDLGFEDDIREVFDHFKSQR---------------QTLLFSATMPTKIQIFARS 353
Query: 436 -LDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECL 494
L K + AG N ++ Q + ++ + E K+ L+ECL
Sbjct: 354 ALVKPVTVNVGRAGAANLDVIQEVEYVKQ---------------EAKIV-----YLLECL 393
Query: 495 PMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLE 554
L+FC V ++ +L + + IH Q++R
Sbjct: 394 QKTSP------------PVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDR----- 436
Query: 555 KFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDN 614
E + + K GK +L+A+DVA++GLD I+HV++Y +P + Y+HR GRT R
Sbjct: 437 ---EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 493
Query: 615 EGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQND 654
G++ + +S L L+ +L K P ND
Sbjct: 494 TGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELND 533
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 141 bits (356), Expect = 3e-33
Identities = 115/426 (26%), Positives = 203/426 (46%), Gaps = 63/426 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E L +L G+ G+ RP+ IQ +IP+AL G +++ +A G+GKT AY IP++EQ+
Sbjct: 60 EEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQI 119
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
D + D L+ PTRELA Q + ++ ++ K ++ TGG + ++ IL+
Sbjct: 120 --DPTKDYIQALVMVPTRELALQTS----QICIELAKHLDIRVMVTTGGTIL--KDDILR 171
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
++I+ATPGR L+L+++ + + LVLDEAD+LL L G
Sbjct: 172 IYQKVQLIIATPGRILDLMDKK---VADMSHCRILVLDEADKLLS----------LDFQG 218
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
+ + P Q ++FSATF L + ++K + E +L
Sbjct: 219 MLDHVILKLPKDP-----QILLFSATFPLTVKNFMEK-------------HLREPYEINL 260
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAID 521
M+++ K ++ Q ++ + CL F + +++FCN+
Sbjct: 261 MEELTLKGV-------TQYYAFVQERQK-VHCLNT-------LFSKLQINQSIIFCNSTQ 305
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
V+ L + L + IH+ MAQ +R R F++ +N L+ SD+ RG
Sbjct: 306 RVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRN--------LVCSDLFTRG 357
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
+D+ + V+++ PR A+ Y+HR GR+ R + G+++ + + E L ++ K L T+
Sbjct: 358 IDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLIT-YEDRFDLHRIEKELGTE 416
Query: 642 KSSNPR 647
P+
Sbjct: 417 IKPIPK 422
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 141 bits (355), Expect = 4e-33
Identities = 129/425 (30%), Positives = 180/425 (42%), Gaps = 82/425 (19%)
Query: 209 IDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSG 268
+D PP+ EN+ L+ FT+PT +Q SIP+ KG ++M A TGSG
Sbjct: 154 LDFSSPPLDELLMENIKLA----------SFTKPTPVQKYSIPIVTKGRDLMACAQTGSG 203
Query: 269 KTLAYGIPIIEQLIKD-------------TSNDRSIGLIFTPTRELAHQVTDHLQKVWTK 315
KT + P+ +L + + L+ PTRELA Q+ + +K +T
Sbjct: 204 KTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARK-FTY 262
Query: 316 MNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDT 375
+ + + GG I Q R + D ++VATPGR +LLER A I
Sbjct: 263 RSWVRPCVVY---GGAPIGNQMR--EVDRGCDLLVATPGRLNDLLERGK---VSLANIKY 314
Query: 376 LVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDL-FT 434
LVLDEADR+L G FE + R I D P+ QT++FSATF +D+
Sbjct: 315 LVLDEADRMLDMG----FEP------QIRHIVEECD-MPSVENRQTLMFSATFPVDIQHL 363
Query: 435 KLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID-TNPEHKVTSQVKESLIEC 493
D I + G + E + ++ K ++D + EHK
Sbjct: 364 ARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHK------------ 411
Query: 494 LPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNL 553
G TL+F +L FL + IH Q R R L
Sbjct: 412 -----------------GLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERAL 454
Query: 554 EKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGD 613
F K IL+A+ VAARGLDI + HV++Y LP D Y+HR GRT R
Sbjct: 455 SAF--------KANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAG 506
Query: 614 NEGVS 618
N GV+
Sbjct: 507 NTGVA 511
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 141 bits (355), Expect = 4e-33
Identities = 144/475 (30%), Positives = 218/475 (45%), Gaps = 81/475 (17%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ LS+ L+GL +T+PTEIQ +I +L G +++G A TGSGKTLA IP++E L
Sbjct: 79 EDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEAL 138
Query: 282 IK-DTSNDRSIG-LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQ-KQER 338
+ S D +G LI +PTRELA Q + V + ++ + GG + ++ R
Sbjct: 139 WRAKWSPDYGLGALIISPTRELALQTFSTINAVGAH----HGFSCGLVIGGSDVAFERNR 194
Query: 339 ILKYDGSG-RIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKIL 397
I SG IIV TPGR L+ ++ N + + LVLDEADR+L G + I+
Sbjct: 195 I-----SGINIIVCTPGRLLQHMDENAQM--SCDSLQVLVLDEADRMLDMGFSKQLNSII 247
Query: 398 KLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQV 457
L R QT++FSAT + ++ + + + EN
Sbjct: 248 NNLPAER---------------QTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATP 292
Query: 458 LNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFC 517
N K VI++ EHK+ + S IE ++ +LVF
Sbjct: 293 DN-------LKQSYVIVE--EEHKINA--LWSFIEAHRKKK--------------SLVFV 327
Query: 518 NAIDSVKKLNAFLNNLK--ISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIAS 575
++ + L + L+ + + +M QK R+ KF E K +LIA+
Sbjct: 328 SSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDE--------SKAAVLIAT 379
Query: 576 DVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLR 635
DVA+RGLD I V+ P D YIHR GR+AR D+ G S+++ SP + + KL
Sbjct: 380 DVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKL- 438
Query: 636 KVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRE--RSKIASELADDEIATKSL 688
+K S P + L + PD +S +R R+ +A E A KS+
Sbjct: 439 -----EKHSIP--------IEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSI 480
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 140 bits (354), Expect = 6e-33
Identities = 126/435 (28%), Positives = 186/435 (41%), Gaps = 79/435 (18%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
+L+ + FT+PT +Q S+P+ G ++M A TGSGKT + P++ + K + +
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 290 S-------------IGLIFTPTRELAHQVTDHLQKV----WTKMNKLNKYTILSLTGGLS 332
+I PTRELA Q+ D +K W K + GG
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKA--------CVVYGGSP 264
Query: 333 IQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDE 392
I Q R + + ++VATPGR +LLER + A + LVLDEADR+L G
Sbjct: 265 IGNQLR--EIERGCDLLVATPGRLNDLLERGKISL---ANVKYLVLDEADRMLDMG---- 315
Query: 393 FEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDL-FTKLDKTSWKILKTAGGEN 451
FE + R I D P G QT++FSATF D+ D S I + G
Sbjct: 316 FEP------QIRHIVEDCDMTPVGER-QTLMFSATFPADIQHLARDFLSDYIFLSVGRVG 368
Query: 452 NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPG 511
+ E + ++ + K +L++ L D G
Sbjct: 369 STSENITQKVL-----------------YVENQDKKSALLDLLSASTD-----------G 400
Query: 512 TTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTI 571
TL+F +L FL + IH Q R R L F+ G T+
Sbjct: 401 LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRS--------GAATL 452
Query: 572 LIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPL 631
L+A+ VAARGLDI + HV++Y LP D Y+HR GRT R N G++ + E+ +
Sbjct: 453 LVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFN-SENSNIV 511
Query: 632 RKLRKVLSTKKSSNP 646
+ L ++L+ P
Sbjct: 512 KGLHEILTEANQEVP 526
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 140 bits (354), Expect = 6e-33
Identities = 126/417 (30%), Positives = 200/417 (47%), Gaps = 61/417 (14%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD---TS 286
VLK + LGF PT IQ ++ P+A+ G +++G ++TGSGKTL+Y +P I + +
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSP 192
Query: 287 NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSG 346
D I L+ PTRELA Q+ Q+ TK K ++ + GG+ Q R L
Sbjct: 193 GDGPIVLVLAPTRELAVQI----QQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIR--GV 246
Query: 347 RIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKI 406
I +ATPGR L++L+ N + R + LVLDEADR+L G + KI+ + R
Sbjct: 247 EICIATPGRLLDMLDSNKTNLRR---VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-- 301
Query: 407 KTSIDGKPTGSGWQTMIFSATFSLDLFTKL-DKTSWKILKTAGGENNEMEQVLNHLMKKI 465
QT++FSAT+ ++ D + I T G ++ +H +K+I
Sbjct: 302 -------------QTVMFSATWPKEVQRLARDYLNDYIQVTVGS----LDLAASHNIKQI 344
Query: 466 QFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKK 525
V+ + + ++ ++E L +RD V +++ GT V
Sbjct: 345 V----EVVDNADKRARLGKDIEEVL-----KDRDNKV----LIFTGTKRV-------ADD 384
Query: 526 LNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDIS 585
+ FL + IH AQ R L +F+ GK I++A+DVA+RG+D+
Sbjct: 385 ITRFLRQDGWPALAIHGDKAQDERDWVLNEFR--------TGKSPIMVATDVASRGIDVK 436
Query: 586 GIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKK 642
GI HV +Y P + + Y+HR GRT R +G + + ++ R+L +LS K
Sbjct: 437 GITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFT-SDNAKQARELVSILSEAK 492
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 140 bits (354), Expect = 6e-33
Identities = 112/405 (27%), Positives = 203/405 (49%), Gaps = 62/405 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L +L+G+ GF +P+ IQ +SIP+AL G +I+ +A G+GKT A+ IP +E++
Sbjct: 157 EDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKI 216
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
D N+ +I PTRELA Q + +V +++K K ++ TGG S+ ++ I++
Sbjct: 217 --DPENNVIQAVILVPTRELALQTS----QVCKELSKYLKIEVMVTTGGTSL--RDDIMR 268
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
++V TPGR L+L ++ ++ A LV+DEAD+LL E++++ L
Sbjct: 269 LYQPVHLLVGTPGRILDLAKKGVCVLKDCA---MLVMDEADKLLSVEFQPSIEELIQFLP 325
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
++R+I ++FSATF + + + D+ K N M+Q+ L
Sbjct: 326 ESRQI---------------LMFSATFPVTVKSFKDRYLKKPYII-----NLMDQLT--L 363
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAID 521
M Q+ + + CL F + +++FCN+++
Sbjct: 364 MGVTQY--------------YAFVEERQKVHCLNT-------LFSKLQINQSIIFCNSVN 402
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
V+ L + L S F IH+ M Q +R R F+ + +N L+ +D+ RG
Sbjct: 403 RVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRN--------LVCTDLFTRG 454
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
+DI + V+++ PR+++ Y+HR GR+ R + G++V + + ++
Sbjct: 455 IDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYED 499
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 140 bits (353), Expect = 8e-33
Identities = 118/447 (26%), Positives = 199/447 (44%), Gaps = 72/447 (16%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + W++ ++ ++ L +++PT IQ ++IP + G +++G A TGSGKTLA+
Sbjct: 300 PKPIKTWAQ-CGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAF 358
Query: 274 GIPIIEQLIKD---TSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGG 330
+P+ ++ D I +I PTRELA Q K K K + GG
Sbjct: 359 LLPMFRHILDQPELEEGDGPIAVILAPTRELAMQT----YKEANKFAKPLGLKVACTYGG 414
Query: 331 LSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHF 390
+ I +Q LK I+V TPGR +++L N + ++ LVLDEADR+ G
Sbjct: 415 VGISEQIADLK--RGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKG-- 470
Query: 391 DEFE-KILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGG 449
FE +I+K++ R K QT++FSATF
Sbjct: 471 --FEPQIMKVVNNIRPDK------------QTVLFSATFP-------------------- 496
Query: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY 509
ME + ++ KPV I + V S + ++ + C ++ L + + MY
Sbjct: 497 --RHMEALARKVL------DKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMY 548
Query: 510 --PGTTLVFCNAIDSVKKLNAFLNNLKISSFQ----IHSSMAQKNRLRNLEKFKEQSEKN 563
G+++VF +D +K + ++ L + + +H + Q +R ++ F
Sbjct: 549 YEEGSSIVF---VDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADF------- 598
Query: 564 SKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICS 623
K G +L+A+ VAARGLD+ + V++Y P + Y+HR GRT R +G +
Sbjct: 599 -KTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVL 657
Query: 624 PQESMGPLRKLRKVLSTKKSSNPRKTK 650
P+ ++ + T P K
Sbjct: 658 PEHQEKMAGEICRAFETAGCKPPADLK 684
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 140 bits (353), Expect = 8e-33
Identities = 118/447 (26%), Positives = 199/447 (44%), Gaps = 72/447 (16%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + W++ ++ ++ L +++PT IQ ++IP + G +++G A TGSGKTLA+
Sbjct: 300 PKPIKTWAQ-CGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAF 358
Query: 274 GIPIIEQLIKD---TSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGG 330
+P+ ++ D I +I PTRELA Q K K K + GG
Sbjct: 359 LLPMFRHILDQPELEEGDGPIAVILAPTRELAMQT----YKEANKFAKPLGLKVACTYGG 414
Query: 331 LSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHF 390
+ I +Q LK I+V TPGR +++L N + ++ LVLDEADR+ G
Sbjct: 415 VGISEQIADLK--RGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKG-- 470
Query: 391 DEFE-KILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGG 449
FE +I+K++ R K QT++FSATF
Sbjct: 471 --FEPQIMKVVNNIRPDK------------QTVLFSATFP-------------------- 496
Query: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY 509
ME + ++ KPV I + V S + ++ + C ++ L + + MY
Sbjct: 497 --RHMEALARKVL------DKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMY 548
Query: 510 --PGTTLVFCNAIDSVKKLNAFLNNLKISSFQ----IHSSMAQKNRLRNLEKFKEQSEKN 563
G+++VF +D +K + ++ L + + +H + Q +R ++ F
Sbjct: 549 YEEGSSIVF---VDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADF------- 598
Query: 564 SKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICS 623
K G +L+A+ VAARGLD+ + V++Y P + Y+HR GRT R +G +
Sbjct: 599 -KTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVL 657
Query: 624 PQESMGPLRKLRKVLSTKKSSNPRKTK 650
P+ ++ + T P K
Sbjct: 658 PEHQEKMAGEICRAFETAGCKPPADLK 684
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 140 bits (353), Expect = 8e-33
Identities = 121/432 (28%), Positives = 205/432 (47%), Gaps = 72/432 (16%)
Query: 223 NMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI 282
++ +S ++K L G G + IQ + A++G +++G+A TG+GKTLA+GIPII+++I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 283 K-DTSNDRSIG---LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQER 338
K + + R L+ PTRELA QV ++ ++ + Y GG I +Q R
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLY------GGTPIGQQMR 233
Query: 339 ILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILK 398
L Y + V TPGR ++L++R +++ +VLDEAD++LQ G ++ E IL+
Sbjct: 234 ELNYGID--VAVGTPGRIIDLMKRG---ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQ 288
Query: 399 LLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVL 458
L R Q+M+FSAT SW +
Sbjct: 289 KLPAKR---------------QSMMFSATM----------PSW----------------I 307
Query: 459 NHLMKKIQFKSKPVIIDT--NPEHKVTSQVKESLIECLPMERDLYVYYFIMMY--PGTTL 514
L KK + + P+ ID + + K+ + I R + + + G +
Sbjct: 308 RSLTKK--YLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCI 365
Query: 515 VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
VF +L AF +H ++Q R R L F++ G +IL+A
Sbjct: 366 VFTQTKRDADRL-AFGLAKSYKCEALHGDISQAQRERTLAGFRD--------GNFSILVA 416
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKL 634
+DVAARGLD+ + V+HY LP + + ++HR+GRT R +G +++I Q+ ++ +
Sbjct: 417 TDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILI-HGQDQTRAVKMI 475
Query: 635 RKVLSTKKSSNP 646
K + ++ + P
Sbjct: 476 EKEVGSRFNELP 487
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 140 bits (352), Expect = 1e-32
Identities = 112/392 (28%), Positives = 190/392 (47%), Gaps = 60/392 (15%)
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPT 298
F +PT IQ + P L G +++G A TGSGKT A+G+P I L+ D L+ +PT
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPT 191
Query: 299 RELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLE 358
RELA Q+ D+L + K+ + GG+ +Q LK +++VATPGR L+
Sbjct: 192 RELASQIYDNLIVLTDKVG----MQCCCVYGGVPKDEQRIQLK---KSQVVVATPGRLLD 244
Query: 359 LL-ERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGS 417
LL E + DL ++++ LVLDEADR+L+ G ++ + I++ +++
Sbjct: 245 LLQEGSVDL----SQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKR------------ 288
Query: 418 GWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTN 477
QT++F+AT+ ++ +K + G +++ N + +I V+
Sbjct: 289 --QTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQL--TANKRITQI----VEVVDPRG 340
Query: 478 PEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISS 537
E K+ +K+ P + + + + + K+ NLK +
Sbjct: 341 KERKLLELLKK--YHSGPKKNEKVLIFALYK---------------KEAARVERNLKYNG 383
Query: 538 FQ---IHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYH 594
+ IH ++Q+ R + L +FK GK +L+A+DVAARGLDI +K V++
Sbjct: 384 YNVAAIHGDLSQQQRTQALNEFKS--------GKSNLLLATDVAARGLDIPNVKTVINLT 435
Query: 595 LPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
P + + Y+HR GRT R G + + + QE
Sbjct: 436 FPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE 467
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 140 bits (352), Expect = 1e-32
Identities = 113/408 (27%), Positives = 189/408 (45%), Gaps = 63/408 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M LS+ V KG+ G+ PT IQ K+IP+ L G +++ A TGSGKT + +P+ E+L
Sbjct: 99 QSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERL 158
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
++ + LI +PTRELA Q K ++ K + GG ++ Q L
Sbjct: 159 KTHSAQTGARALILSPTRELALQTL----KFTKELGKFTGLKTALILGGDRMEDQFAALH 214
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ II+ATPGR + + ++ + ++ +V DEADRL + G ++ ++I+ L
Sbjct: 215 ENPD--IIIATPGRLVHVA---VEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARL- 268
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
G QT++FSAT L K + +
Sbjct: 269 --------------PGGHQTVLFSAT--------LPKLLVEFARAG-------------- 292
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLI---ECLPMERDLYVYYFIMMYPGTTLVFCN 518
++PV+I + + K+ Q+K S E L++ + ++ T+VF
Sbjct: 293 ------LTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVA 346
Query: 519 AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
+ L L ++S I+S++ R NL KF +GK + LI +D+A
Sbjct: 347 TKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF--------TLGKCSTLIVTDLA 398
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
ARGLDI + +V++Y P +++HR GR AR G + + +P E
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 446
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 139 bits (351), Expect = 1e-32
Identities = 139/508 (27%), Positives = 238/508 (46%), Gaps = 67/508 (13%)
Query: 189 TEDQTNDDLLQ--SNVFSSNVDI---DDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPT 243
T + +DD + FS + + D+ + L E L + K ++ + F T
Sbjct: 71 TRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLT 130
Query: 244 EIQLKSIP--LALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSI--GLIFTPTR 299
+Q K+I L+ + H+++ +A TG+GKT A+ IPI + LI + + + +I PTR
Sbjct: 131 PVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 190
Query: 300 ELAHQVTDHLQKVWTKMNKLNKYTILSLTGGL----SIQKQERILKYDGSGRIIVATPGR 355
+LA Q+ ++K+ L KY +SL GG ++ K ++ I++ATPGR
Sbjct: 191 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP-----NIVIATPGR 245
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
+++LE+ + RF +D VLDEADRLL+ G D+ E I +L + +
Sbjct: 246 LIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDDLETISGILNEKNS--------KS 295
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKS-----K 470
+T++FSAT LD K+ K A N+ E + + K + ++ +
Sbjct: 296 ADNIKTLLFSAT--------LDD---KVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQ 344
Query: 471 PVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFL 530
V+I + + + V+ I+ ERD Y I+ P T+ F + + S+ K N F
Sbjct: 345 SVVISEKFANSIFAAVEH--IKKQIKERDSN-YKAIIFAP--TVKFTSFLCSILK-NEFK 398
Query: 531 NNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHV 590
+L I F H + Q R +++FK+ IL+ +DV ARG+D + V
Sbjct: 399 KDLPILEF--HGKITQNKRTSLVKRFKKDESG--------ILVCTDVGARGMDFPNVHEV 448
Query: 591 LHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTK 650
L +P YIHR GRTAR EG SV+ E L +R++ K ++ K
Sbjct: 449 LQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE----LPFVRELEDAKNIVIAKQEK 504
Query: 651 WQNDVPMLPLEPDIVSQLRERSKIASEL 678
++ P ++ +++ + E + S++
Sbjct: 505 YE---PSEEIKSEVLEAVTEEPEDISDI 529
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 139 bits (350), Expect = 2e-32
Identities = 123/414 (29%), Positives = 196/414 (46%), Gaps = 54/414 (13%)
Query: 225 DLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD 284
+L+ T+ K ++ G+++ T IQ ++PL +G++IM A TGSGKT A+ +PI+ +LI D
Sbjct: 347 NLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDD 406
Query: 285 TS-NDRSIG------LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQE 337
+ N G +I TPTRELA Q+ + +K + I + GGL++ +
Sbjct: 407 NNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQ----TMMEIKPVYGGLAVGYNK 462
Query: 338 RILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKIL 397
+ + IIV T GR E + K VLDEADR++
Sbjct: 463 G--QIEKGATIIVGTVGRIKHFCEEGTI---KLDKCRFFVLDEADRMID----------- 506
Query: 398 KLLGKARKIKTSI--DGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEME 455
+G I+T + D P QT++FSATF + + + L+ E
Sbjct: 507 -AMGFGTDIETIVNYDSMPRKENRQTLMFSATFP----DSVQEAARAFLR---------E 552
Query: 456 QVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYY-FIMMYPGTTL 514
+ + KI +K V+ + E S+ K+ L+E L ++ D Y +Y T+
Sbjct: 553 NYVMIAIDKIGAANKCVLQEF--ERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTM 610
Query: 515 VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
VF + L + L++ ++ + IH + Q+ R L +F+ G +LIA
Sbjct: 611 VFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRN--------GSKPVLIA 662
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESM 628
+ VA RGLDI G+ HV++Y +P + D YIHR GRT R N G + S S+
Sbjct: 663 TAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFISEDCSL 716
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 138 bits (348), Expect = 3e-32
Identities = 114/433 (26%), Positives = 198/433 (45%), Gaps = 71/433 (16%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
+L L GFT PT IQ + IP+AL +++ TGSGKTLA+ IP+++Q+I D
Sbjct: 133 LLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAG 192
Query: 290 SIGLIFTPTRELAHQVTDHLQKVWTK--MNKLNKYTILSLTGGLSIQKQERIL---KYDG 344
GLI +PT+ELA+Q+ K+ K + K + L+ L + + +++ KYD
Sbjct: 193 LKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYD- 251
Query: 345 SGRIIVATPGRFLELLERNP-DLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKA 403
II++TP R +++++ DL +K+ L+ DEAD+L ++ + IL +
Sbjct: 252 ---IIISTPLRLIDVVKNEALDL----SKVKHLIFDEADKLFDKTFVEQSDDILSACREP 304
Query: 404 RKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMK 463
K +FSAT + +E++ +M
Sbjct: 305 SLRKA--------------MFSATIP----------------------SNVEEIAQSIM- 327
Query: 464 KIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMM---YPGTTLVFCNAI 520
PV + + + +++ LI C E L ++ + ++F +I
Sbjct: 328 -----MDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESI 382
Query: 521 DSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAAR 580
K L L +I+ IH+ R R +E+F K G+ LI +DV AR
Sbjct: 383 TRAKALYHELMYDRINVDVIHAERTALQRDRIIERF--------KTGELWCLICTDVLAR 434
Query: 581 GLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLST 640
G+D G+ V++Y +P S+ Y+HR GRT RG G ++ + Q+S+ ++ +++
Sbjct: 435 GIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVA----IKPIINV 490
Query: 641 KKSSNPRKTKWQN 653
K S ++W +
Sbjct: 491 MKQSGCEVSEWMD 503
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 138 bits (348), Expect = 3e-32
Identities = 122/442 (27%), Positives = 197/442 (43%), Gaps = 81/442 (18%)
Query: 226 LSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK-- 283
L+ +L+ + G+T+PT +Q SIP+ G ++M A TGSGKT + PI+
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 284 ----DTSNDRSIG----------LIFTPTRELAHQVTDHLQKV----WTKMNKLNKYTIL 325
D +G LI PTREL Q+ + +K W +
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRP--------C 287
Query: 326 SLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLL 385
++ GG I+ Q I + D ++ ATPGR ++L++R + A I LVLDEADR+L
Sbjct: 288 AVYGGADIRAQ--IRQIDQGCDLLSATPGRLVDLIDRGRISL---ANIKFLVLDEADRML 342
Query: 386 QDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDL-FTKLDKTSWKIL 444
G FE ++ + + + TS++ + QT++FSATF D+ D +
Sbjct: 343 DMG----FEPQIRHIVEGADM-TSVEER------QTLMFSATFPRDIQLLARDFLKDYVF 391
Query: 445 KTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYY 504
+ G + E + ++ + + ++D ++ LP E
Sbjct: 392 LSVGRVGSTSENITQKVVHVEDSEKRSYLLD--------------ILHTLPPE------- 430
Query: 505 FIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNS 564
G TL+F L +L N + IH Q+ R R LE F+
Sbjct: 431 ------GLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRS------ 478
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
G+ +I++A+ VA+RGLDI + HV++Y LP D Y+HR GRT R N G +V +
Sbjct: 479 --GRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN- 535
Query: 625 QESMGPLRKLRKVLSTKKSSNP 646
+ + G ++L ++L P
Sbjct: 536 RNNKGIAKELIELLQEANQECP 557
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 138 bits (348), Expect = 3e-32
Identities = 123/461 (26%), Positives = 202/461 (43%), Gaps = 79/461 (17%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+ LS LK + GF T +Q ++P+ L+G +++ KA TG+GKT+A+ +P IE +
Sbjct: 362 DQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAV 421
Query: 282 IK------DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKY----TILSLTGGL 331
IK D+ I L+ PTRELA Q + N L KY + + GG
Sbjct: 422 IKSPPASRDSRQPPIIVLVVCPTRELASQAA-------AEANTLLKYHPSIGVQVVIGGT 474
Query: 332 SIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFD 391
+ ++R ++ + +I+VATPGR + +E R + LVLDEAD LL G
Sbjct: 475 KLPTEQRRMQTNPC-QILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRR 533
Query: 392 EFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGEN 451
+ E+I+ + K R QT +FSAT
Sbjct: 534 DIERIIAAVPKQR---------------QTFLFSATVP---------------------- 556
Query: 452 NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVK--ESLIECLPMERDLYVYYFIMMY 509
E+ Q+ + +K+ V + H+ +Q+ SL + L +
Sbjct: 557 EEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNV 616
Query: 510 PGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKP 569
++FC + + L+ L ++ +IHS Q R R ++F++ K
Sbjct: 617 DYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRK--------SKA 668
Query: 570 TILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMG 629
IL+ SDV+ARG+D + V+ LP + YIHR GRT R EG V++ +P E
Sbjct: 669 IILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEY- 727
Query: 630 PLRKLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLRE 670
+S+ K K+ P+ P++P+ V ++++
Sbjct: 728 -------FMSSVKDLPITKS------PLPPIDPEAVKRVQK 755
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 138 bits (348), Expect = 3e-32
Identities = 120/425 (28%), Positives = 200/425 (46%), Gaps = 65/425 (15%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
D EPP LS +++ L+ F T +Q +IPL ++ A+TGSGKT
Sbjct: 18 DLEPP----------LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKT 67
Query: 271 LAYGIPIIEQLIKDTS----NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS 326
LA+ +P++E L + TS + +G+I +PTREL+ Q+ + Q + + +N +
Sbjct: 68 LAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNS---VL 124
Query: 327 LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ 386
L GG ++ +I++ +G +++ TPGR +++ER L F ++ L+LDEADRLL+
Sbjct: 125 LVGGREVKADMKIIEEEGCN-VLIGTPGRLSDIMERMEIL--DFRNLEILILDEADRLLE 181
Query: 387 DGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKT 446
G + I+ L K R+ T +FSAT +T
Sbjct: 182 MGFQRQVNYIISRLPKQRR---------------TGLFSAT-----------------QT 209
Query: 447 AGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFI 506
G E + N + +++ KSK K S + +EC ++ + +
Sbjct: 210 EGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLL 269
Query: 507 MMYPGTTLVF----CNAIDSVKKLNAFLNNLK-ISSFQIHSSMAQKNRLRNLEKFKEQSE 561
+ L+ C ++D + + + LK IS IH M Q R + L F + S
Sbjct: 270 IKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFTKASS 329
Query: 562 KNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMI 621
L+ +DVAARGLDI GI +V+ Y P+ +++ HR+GRTAR +G +++
Sbjct: 330 G--------ALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVF 381
Query: 622 CSPQE 626
P+E
Sbjct: 382 LLPKE 386
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 138 bits (348), Expect = 3e-32
Identities = 125/440 (28%), Positives = 214/440 (48%), Gaps = 61/440 (13%)
Query: 237 LGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSN-DRSIG--- 292
+GF PT +Q ++IP+ L G +++ A TG+GKT+AY P+I L + DRS G
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 293 LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVAT 352
L+ PTREL QV + L+K+ + + + ++ GG K++ L+ S I++AT
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVM---GGEKKAKEKARLRKGIS--ILIAT 162
Query: 353 PGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDG 412
PGR L+ L+ + + + ++ DEAD +L+ G+ E E+I+KLLG + + D
Sbjct: 163 PGRLLDHLKNTASFVHK--NLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDD 220
Query: 413 -KPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLN-HLMKKIQFKSK 470
P G Q ++ SAT + D L K S G +N +++Q L+ ++
Sbjct: 221 IVPKGIQKQNLLLSATLN-DKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAE 279
Query: 471 PVIIDTN-------PEHKVTSQVKE---------SLIECLPMERDLYVYYFIMMYPGTTL 514
++I N ++ + SQ+ + L+ L + ++L F +
Sbjct: 280 DMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNL----FEREASQKVV 335
Query: 515 VFCNAIDSVKKLNAFLNN------------------LKISSFQIHSSMAQKNRLRNLEKF 556
VF + D+V + L+ LK +F++H SM Q++R F
Sbjct: 336 VFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTF 395
Query: 557 KEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG 616
K + K +L+++DVAARGLD ++ ++ Y P A Y+HR GRTAR +G
Sbjct: 396 KTE--------KQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKG 447
Query: 617 VSVMICSPQESMGPLRKLRK 636
+++ P E + L++L+K
Sbjct: 448 EALLFLQPIE-IDYLKELKK 466
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 138 bits (348), Expect = 3e-32
Identities = 121/423 (28%), Positives = 191/423 (44%), Gaps = 67/423 (15%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
++K L+ LG T IQ K IP L G + +G A TGSGKT A+ +PI+E+L ++ +
Sbjct: 18 LVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSH- 76
Query: 290 SIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRII 349
L+ TPT ELA+Q+++ M + ++GG + + L I+
Sbjct: 77 -FALVLTPTHELAYQISEQFLVAGQAMG----VRVCVVSGGTDQMVESQKLMQ--RPHIV 129
Query: 350 VATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKIL-KLLGKARKIKT 408
VA PGR + L F + LV+DEADR+L +G FDE I+ + L K R
Sbjct: 130 VAMPGRLADHLTGCDTF--SFDNLKYLVVDEADRML-NGDFDESLSIIERCLPKTR---- 182
Query: 409 SIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFK 468
Q + FSAT D + + E Q
Sbjct: 183 -----------QNLFFSATMK-------DFIKESSIFPIASDCFEWSQ-----------D 213
Query: 469 SKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYP-----GTTLVFCNAIDSV 523
S ++T + + + C +RD+ + + Y ++F N
Sbjct: 214 SDVATVET---------LDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYC 264
Query: 524 KKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLD 583
+ L+ L N++I + +H M QK R+ L +FK + LIA+DVAARGLD
Sbjct: 265 QLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRT--------LIATDVAARGLD 316
Query: 584 ISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKS 643
I ++ V+++ LPR+ YIHR GRTAR +G+S+ I + L + + ++TK +
Sbjct: 317 IPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAIEEEINTKLT 376
Query: 644 SNP 646
+P
Sbjct: 377 EHP 379
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 138 bits (347), Expect = 4e-32
Identities = 115/411 (27%), Positives = 193/411 (45%), Gaps = 65/411 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+++DLS + +GF T+IQ SI L+G +++G A TGSGKTLA+ IP +E L
Sbjct: 92 DSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELL 151
Query: 282 IKDTSNDRSIG--LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERI 339
K+ + R+ ++ PTRELA Q + V ++ K + T+ + GG + ++
Sbjct: 152 FKERFSPRNGTGVIVICPTRELAIQT----KNVAEELLKHHSQTVSMVIGGNN--RRSEA 205
Query: 340 LKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKL 399
+ +++ATPGR L+ L+ I + + LV+DEADR+L++ ++ KILK+
Sbjct: 206 QRIASGSNLVIATPGRLLDHLQNTKAFI--YKHLKCLVIDEADRILEENFEEDMNKILKI 263
Query: 400 LGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLN 459
L K R QT +FSAT + ++++ +
Sbjct: 264 LPKTR---------------QTALFSAT----------------------QTSKVKDLAR 286
Query: 460 HLMKKIQFKSKPVIIDTNP-EHKVTSQVKESLIECLPMERD--LYVYYFIMMYPGTTLVF 516
+ + PV +D + KVT++ E +P ++ L + + +VF
Sbjct: 287 VSL------TSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVF 340
Query: 517 CNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASD 576
+ SV+ + + IH M Q R + F + K IL+ +D
Sbjct: 341 FSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMK--------AKKGILLCTD 392
Query: 577 VAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDN-EGVSVMICSPQE 626
VAARGLDI + ++ Y P YIHR GRTARG+ +G ++++ P+E
Sbjct: 393 VAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEE 443
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 137 bits (346), Expect = 5e-32
Identities = 118/422 (27%), Positives = 192/422 (44%), Gaps = 73/422 (17%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
PP + +S+ +++ ++ + +TRPT +Q +IP+ + ++M A TGSGKT A+
Sbjct: 176 PPHIESFSD-VEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 234
Query: 274 GIPIIEQLIKDTSNDR----------------SIGLIFTPTRELAHQVTDHLQKVWTKMN 317
+PI+ Q+ D + I L+ PTRELA Q+ + + K +
Sbjct: 235 LLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR----KFS 290
Query: 318 KLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLV 377
++ + GG I +Q R L + ++VATPGR ++++ER + F K LV
Sbjct: 291 YRSRVRPCVVYGGADIGQQIRDL--ERGCHLLVATPGRLVDMMERGKIGLD-FCKY--LV 345
Query: 378 LDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDL-FTKL 436
LDEADR+L G + +I++ D P TM+FSATF ++
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQ-----------DTMPPKGVRHTMMFSATFPKEIQMLAR 394
Query: 437 DKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPM 496
D I G + E + ++ + + ++D + + K+SL
Sbjct: 395 DFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDL-----LNATGKDSL------ 443
Query: 497 ERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKF 556
TLVF L FL + + IH +Q++R L +F
Sbjct: 444 ----------------TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 487
Query: 557 KEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG 616
+ GK IL+A+ VAARGLDIS +KHV+++ LP + Y+HR GRT R N G
Sbjct: 488 RS--------GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539
Query: 617 VS 618
++
Sbjct: 540 LA 541
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 137 bits (345), Expect = 6e-32
Identities = 126/468 (26%), Positives = 208/468 (43%), Gaps = 93/468 (19%)
Query: 198 LQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGH 257
L ++ VD D EP + + L +LK + LG+ + ++Q I LAL+
Sbjct: 70 LMESLVGPQVDEMDFEPE--HKTFADFGLDERILKSIGELGWEKANQVQESVISLALENK 127
Query: 258 NIMGKASTGSGKTLAYGIPIIEQLIKDT-SNDRSIG---LIFTPTRELAHQVTDHLQKVW 313
NIMG+A TGSGKT A+ IP++++LI ++ +ND S+G +I PT+EL Q+ K++
Sbjct: 128 NIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQI----YKLF 183
Query: 314 TKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKI 373
K+++ + L I ++E + + ++V TPG+ L + P+ +
Sbjct: 184 VKLSQALPF--LQAINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCSLRPEYC---TLV 238
Query: 374 DTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLF 433
LV+DEAD LL G+ +E KI L PT +Q ++ SAT D+
Sbjct: 239 SYLVMDEADLLLSFGYEEEMIKIRSKL------------PPT---YQCLMTSATLKDDMT 283
Query: 434 TKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID--TNPEHKVTSQVKESLI 491
T +KK+ F + PVI T + + Q+ + +
Sbjct: 284 T---------------------------LKKL-FMTGPVITIKLTEGDLPNSDQLTQYQL 315
Query: 492 ECLPMERD---LYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKN 548
C E L + + + G +++F N ID KL L + S ++S+M +
Sbjct: 316 TCGSDEERFAILVAMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANS 375
Query: 549 RLRNLEKFKEQS-----------------------------EKNSKVGKPTILIASDV-A 578
R + +F E S EK+ K GK + +
Sbjct: 376 RCHVINQFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGV 435
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
+RG+D + +V+++ P + D YIHR GRTARG N+G ++ C P E
Sbjct: 436 SRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSE 483
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 137 bits (345), Expect = 6e-32
Identities = 109/423 (25%), Positives = 193/423 (44%), Gaps = 46/423 (10%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P L W E V + + +G+ PT IQ ++IP+ L+ +++G A TGSGKT A+
Sbjct: 297 PRPLRNWEE-AGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAF 355
Query: 274 GIPIIEQLIK----DTSNDRSIG---LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS 326
+P++ + + R +G +I PTRELA Q+ + K KL +S
Sbjct: 356 LLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNK----FGKLLGIKTVS 411
Query: 327 LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ 386
+ GG S ++++ +K +++ATPGR L++LE L+ + + +LDEADR+L
Sbjct: 412 VIGGAS--REDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYV---ILDEADRMLD 466
Query: 387 DGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKT 446
G + +K+L+ + K + + + + F+ +K ++ T
Sbjct: 467 MGFEPDVQKVLEYMPDTNMKKDTDE-----------FDNEEALMKGFSTREKYRQTVMFT 515
Query: 447 AGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFI 506
A M + L + Q+ +P ++ K T +V E ++ +P +R +
Sbjct: 516 A-----TMSSAIERLAR--QYLRRPAVVHIGSAGKPTERV-EQVVYMVPEDRKRKKLVEV 567
Query: 507 M--MYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNS 564
+ + ++F N L+ L L +H Q R L+ KE
Sbjct: 568 LESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKE------ 621
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
G IL+A+DVA RG+D+ + VL+Y + +S + Y HR GRT R G ++ +P
Sbjct: 622 --GTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTP 679
Query: 625 QES 627
++
Sbjct: 680 DDT 682
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 137 bits (345), Expect = 6e-32
Identities = 109/423 (25%), Positives = 193/423 (44%), Gaps = 46/423 (10%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P L W E V + + +G+ PT IQ ++IP+ L+ +++G A TGSGKT A+
Sbjct: 297 PRPLRNWEE-AGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAF 355
Query: 274 GIPIIEQLIK----DTSNDRSIG---LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS 326
+P++ + + R +G +I PTRELA Q+ + K KL +S
Sbjct: 356 LLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNK----FGKLLGIKTVS 411
Query: 327 LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ 386
+ GG S ++++ +K +++ATPGR L++LE L+ + + +LDEADR+L
Sbjct: 412 VIGGAS--REDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYV---ILDEADRMLD 466
Query: 387 DGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKT 446
G + +K+L+ + K + + + + F+ +K ++ T
Sbjct: 467 MGFEPDVQKVLEYMPDTNMKKDTDE-----------FDNEEALMKGFSTREKYRQTVMFT 515
Query: 447 AGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFI 506
A M + L + Q+ +P ++ K T +V E ++ +P +R +
Sbjct: 516 A-----TMSSAIERLAR--QYLRRPAVVHIGSAGKPTERV-EQVVYMVPEDRKRKKLVEV 567
Query: 507 M--MYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNS 564
+ + ++F N L+ L L +H Q R L+ KE
Sbjct: 568 LESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKE------ 621
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
G IL+A+DVA RG+D+ + VL+Y + +S + Y HR GRT R G ++ +P
Sbjct: 622 --GTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTP 679
Query: 625 QES 627
++
Sbjct: 680 DDT 682
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 137 bits (345), Expect = 6e-32
Identities = 109/415 (26%), Positives = 198/415 (47%), Gaps = 57/415 (13%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + W E+ L+ +LK + G+ +P+ IQ+ +IPL L+ +++G A TGSGKT A+
Sbjct: 309 PRPMRSWEESK-LTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 367
Query: 274 GIPIIEQLIK------DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSL 327
+P++ + + + + ++ PTRELA Q+ + K + + + S+
Sbjct: 368 VLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG----FRVTSI 423
Query: 328 TGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQD 387
GG SI++Q LK I++ATPGR ++ LER ++ + + +VLDEADR++
Sbjct: 424 VGGQSIEEQG--LKITQGCEIVIATPGRLIDCLERRYAVL---NQCNYVVLDEADRMIDM 478
Query: 388 GHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTA 447
G + +L + S + KP +LD+ KI +T
Sbjct: 479 GFEPQVAGVLDAM-------PSSNLKPENEE---------------EELDEK--KIYRTT 514
Query: 448 GGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFI- 506
+ M + L +K + PV++ K T + + +I E+ + +
Sbjct: 515 YMFSATMPPGVERLARK--YLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLD 572
Query: 507 MMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQI---HSSMAQKNRLRNLEKFKEQSEKN 563
+ T +VF N + K ++ NL + +++ H +Q+ R +LE F+ +
Sbjct: 573 ELGEKTAIVFVN---TKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAK---- 625
Query: 564 SKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
+ +L+A+DV RG+DI + HV++Y +P+ ++Y HR GRT R GV+
Sbjct: 626 ----RYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVA 676
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 137 bits (345), Expect = 6e-32
Identities = 121/400 (30%), Positives = 180/400 (44%), Gaps = 75/400 (18%)
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIG------ 292
F +P+ IQ + P L G +++G A TGSGKTLA+GIP I ++K ++ IG
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLK---KNKKIGGGSKKV 190
Query: 293 ----LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRI 348
L+ +PTRELA Q++D L++ + + + GG S K +I I
Sbjct: 191 NPTCLVLSPTRELAVQISDVLREAGEPCGLKS----ICVYGGSS--KGPQISAIRSGVDI 244
Query: 349 IVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKT 408
++ TPGR +L+E N + R + + +VLDEADR+L G + IL K R
Sbjct: 245 VIGTPGRLRDLIESN---VLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVR---- 297
Query: 409 SIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFK 468
Q ++FSAT+ LD + ++ M K
Sbjct: 298 -----------QMVMFSATWPLD----------------------VHKLAQEFMDPNPIK 324
Query: 469 SKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY----PGTTLVFCNAIDSVK 524
+D H V Q+ E L E RD + + Y LVF +
Sbjct: 325 VIIGSVDLAANHDV-MQIIEVLDE---RARDQRLIALLEKYHKSQKNRVLVFALYKVEAE 380
Query: 525 KLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDI 584
+L FL + IH + AQ R R+L FKE G +L+A+DVAARGLDI
Sbjct: 381 RLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKE--------GSCPLLVATDVAARGLDI 432
Query: 585 SGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
++ V++Y P + + Y+HR GRT R +GV+ +P
Sbjct: 433 PDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTP 472
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 137 bits (344), Expect = 8e-32
Identities = 115/429 (26%), Positives = 206/429 (47%), Gaps = 57/429 (13%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
D P L W E L +LK L + + P+ IQ +IP+ L+ +++G A TGSGKT
Sbjct: 242 DDLPNPLRNWEE-AGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKT 300
Query: 271 LAYGIPI---IEQLIKDTSNDRSIG---LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTI 324
A+ IP+ I +L T ++ +G ++ PTRELA Q+ Q K + +
Sbjct: 301 AAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQI----QVEGNKFAEPLGFRC 356
Query: 325 LSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRL 384
+S+ GG + ++Q + I+VATPGR L+ LER ++ ++ +V+DEADR+
Sbjct: 357 VSVVGGHAFEEQS--FQMSQGAHIVVATPGRLLDCLERRLFVL---SQCTYVVMDEADRM 411
Query: 385 LQDGHFDEFEKILKLLGKARKIKTS----IDGKPTGSGWQTMIFSATFSLDLFTKLDKTS 440
L G D+ KIL L + + + S QT++FSAT L K+
Sbjct: 412 LDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLP-PRVANLAKSY 470
Query: 441 W--KILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMER 498
++ T G + Q ++ + ++++ +I D + + + ++ ES
Sbjct: 471 LIEPVMLTIG----NIGQAVDRVEQRVE-----MISDDSKKWRRVEEILES--------- 512
Query: 499 DLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKE 558
+ ++F N +++ + LN + + +H S +Q+ R R +E+ +
Sbjct: 513 --------NRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRN 564
Query: 559 QSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
++ IL+A+D+A RG+DI + VL+Y++ +S + Y HR GRT R G +
Sbjct: 565 KT--------ADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTA 616
Query: 619 VMICSPQES 627
+ P+++
Sbjct: 617 ITFLGPEDT 625
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 136 bits (343), Expect = 1e-31
Identities = 112/411 (27%), Positives = 190/411 (45%), Gaps = 68/411 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+++L V + G+ PT IQ K++PL L G +++ A TGSGKT A+ IP++E+L
Sbjct: 31 ESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKL 90
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQ-ERIL 340
+ LI +PTR+LA Q K ++ K + L GG S++ Q E +
Sbjct: 91 KQHVPQGGVRALILSPTRDLAEQTL----KFTKELGKFTDLRVSLLVGGDSMEDQFEELT 146
Query: 341 KYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
K +I+ATPGR + LL D+ R ++ +V DEAD L G ++ +IL L
Sbjct: 147 K---GPDVIIATPGRLMHLLSEVDDMTLR--TVEYVVFDEADSLFGMGFAEQLHQILTQL 201
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATF--SLDLFTKLDKTSWKILKTAGGENNEMEQVL 458
+ R QT++FSAT +L F K AG
Sbjct: 202 SENR---------------QTLLFSATLPSALAEFAK-----------AG---------- 225
Query: 459 NHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGT---TLV 515
+P ++ + E+K++ +K S + P E+ + Y + + + TL+
Sbjct: 226 ---------LREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHISSDQQTLI 276
Query: 516 FCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIAS 575
F + V+ +N+ I + M Q R ++ +F+ + K +LI +
Sbjct: 277 FVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRAR--------KTMLLIVT 328
Query: 576 DVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
D+AARG+DI + +V+++ P +++HR GR AR G + +P++
Sbjct: 329 DIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPED 379
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 136 bits (342), Expect = 1e-31
Identities = 127/418 (30%), Positives = 187/418 (44%), Gaps = 71/418 (16%)
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIG---LIF 295
F +PT IQ S P+A+ G +I+ A TGSGKTLA+ +P + + K R G L+
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVL 208
Query: 296 TPTRELAHQVT----DHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVA 351
PTRELA QV D + KM L GG S Q R L+ I+VA
Sbjct: 209 LPTRELAQQVQEVSIDFCHSLGLKMT--------CLFGGASKGPQARDLERGVD--IVVA 258
Query: 352 TPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFE-KILKLLGKARKIKTSI 410
TPGR L+ L+ K LVLDEADR+L G FE +I K++G+ R +
Sbjct: 259 TPGRLLDFLDNGTT---NMKKCSYLVLDEADRMLDMG----FEPQIKKIIGQIRPDR--- 308
Query: 411 DGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGEN-NEMEQVLNHLMKKIQFKS 469
QT++FSAT+ ++ K A N +E NH + ++
Sbjct: 309 ---------QTLMFSATWPKEVRALASDFQ----KDAAFLNVGSLELAANHNITQV---- 351
Query: 470 KPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAF 529
+D EH +++ E L + + T++F +L
Sbjct: 352 ----VDILEEHAKQAKLMELLNHIMNQKEC------------KTIIFVETKRKADELTRA 395
Query: 530 LNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKH 589
+ + IH Q R L++FK GK I++A+DVAARGLD+ IK
Sbjct: 396 MRRDGWPTLCIHGDKNQGERDWVLQEFK--------AGKTPIMLATDVAARGLDVDDIKF 447
Query: 590 VLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPR 647
V++Y P +++ Y+HR GRT R D +G + + + + L KVL K + P+
Sbjct: 448 VINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFT-HTNASKAKDLLKVLDEAKQTVPQ 504
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 136 bits (342), Expect = 1e-31
Identities = 120/397 (30%), Positives = 186/397 (46%), Gaps = 70/397 (17%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD---TS 286
VL+ + GFT PT IQ + P+A+KG +++G A TGSGKTL+Y +P I +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 287 NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSG 346
D I L+ PTRELA Q+ Q+ +K +K + GG+ Q R L+
Sbjct: 170 GDGPIVLVLAPTRELAVQI----QQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQK--GV 223
Query: 347 RIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKI 406
I++ATPGR ++++E N + R + LVLDEADR+L G + KI+ + R
Sbjct: 224 EIVIATPGRLIDMMESNNTNLRR---VTYLVLDEADRMLDMGFDPQIRKIVSHIRPDR-- 278
Query: 407 KTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQ 466
QT+ +SAT+ E+EQ L KK
Sbjct: 279 -------------QTLYWSATWP----------------------KEVEQ----LSKKFL 299
Query: 467 FKSKPVIIDTNP--EHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVK 524
+ VII ++ ++ Q+ + + E + + + IM LVF +D+ K
Sbjct: 300 YNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMD-GSRILVF---LDTKK 355
Query: 525 KLNAFLNNLKISSF---QIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
+ L++ + IH +Q R L +F+ GK I+ A+DVAARG
Sbjct: 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRS--------GKSPIMTATDVAARG 407
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
LD+ +K+V++Y P S + Y+HR GRT R +G +
Sbjct: 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 135 bits (341), Expect = 2e-31
Identities = 126/455 (27%), Positives = 206/455 (44%), Gaps = 77/455 (16%)
Query: 207 VDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTG 266
V++ + P E +L T+ ++ G+T+ T +Q SIP+ L G ++M A TG
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 335
Query: 267 SGKTLAYGIPIIEQLIKD---TSNDRSIG----LIFTPTRELAHQVTDHLQKVWTKMNKL 319
SGKT A+ +PI+ ++ D S + + +I PTREL +Q ++ + K
Sbjct: 336 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQ-------IYLEARKF 388
Query: 320 NKYTILS---LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTL 376
+ T + + GG Q I + I+ ATPGR ++++ + +I L
Sbjct: 389 SFGTCVRAVVIYGG--TQLGHSIRQIVQGCNILCATPGRLMDIIGKEK---IGLKQIKYL 443
Query: 377 VLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLD---LF 433
VLDEADR+L G E +K++ S G P+ QT++FSATF + L
Sbjct: 444 VLDEADRMLDMGFGPEMKKLI-----------SCPGMPSKEQRQTLMFSATFPEEIQRLA 492
Query: 434 TKLDKTSWKILKT--AGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLI 491
+ K+++ + GG +++Q +++ QF +E L+
Sbjct: 493 AEFLKSNYLFVAVGQVGGACRDVQQT---VLQVGQFSK-----------------REKLV 532
Query: 492 ECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLR 551
E L D T+VF + FL KIS+ IH Q+ R
Sbjct: 533 EILRNIGD-----------ERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRER-- 579
Query: 552 NLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTAR 611
EQ+ + + GK +L+A+ VAARGLDI ++HV+++ LP + D Y+HR GRT R
Sbjct: 580 ------EQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGR 633
Query: 612 GDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNP 646
N G ++ + + L KVL+ + P
Sbjct: 634 CGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVP 668
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 135 bits (341), Expect = 2e-31
Identities = 115/443 (25%), Positives = 203/443 (44%), Gaps = 65/443 (14%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
DQ P E+ E + V+ + GF +PT IQ + P+A+ G +++G A TGSGKT
Sbjct: 143 DQVPTPSIEFEEGGFPDY-VMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKT 201
Query: 271 LAYGIPIIEQLIKDTSNDRS---IGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSL 327
LAY +P + + +R I L+ PTRELA Q+ Q+V + +
Sbjct: 202 LAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQI----QQVAIEFGSNTHVRNTCI 257
Query: 328 TGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQD 387
GG +Q R L + I++ATPGR ++ LER + R LVLDEADR+L
Sbjct: 258 FGGAPKGQQARDL--ERGVEIVIATPGRLIDFLERGTTSLKR---CTYLVLDEADRMLDM 312
Query: 388 GHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTA 447
G + KI++ + R Q +++SAT+ ++ ++
Sbjct: 313 GFEPQIRKIMQQIRPDR---------------QVLMWSATWPKEVRQLAEEFL------- 350
Query: 448 GGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIM 507
NN ++ + L ++ + K+ +K L+ + E +
Sbjct: 351 ---NNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIK--LLTDISAENET------- 398
Query: 508 MYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQ---IHSSMAQKNRLRNLEKFKEQSEKNS 564
T++F +++ K+++ N+ ++ IH +Q+ R L F+
Sbjct: 399 ----KTIIF---VETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRN------ 445
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
G+ +IL+A+DVAARGLD+ +K V++Y P +++ Y+HR GRT R +N G + + +
Sbjct: 446 --GRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTH 503
Query: 625 QESMGPLRKLRKVLSTKKSSNPR 647
+ ++ + ++ NP+
Sbjct: 504 SNANKANDLIQVLREANQTINPK 526
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 135 bits (340), Expect = 2e-31
Identities = 110/414 (26%), Positives = 186/414 (44%), Gaps = 64/414 (15%)
Query: 229 TVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSND 288
+++K G TRPTE+Q + IP L G +++ + TGSGKTLA+ +PI+ L++ N
Sbjct: 11 SLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLLQ--KNR 68
Query: 289 RSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRI 348
L+ PTREL+ Q+ + M + + L GG + Q L +
Sbjct: 69 SFYCLVVAPTRELSSQIAECFN-----MFQATGLRVCLLVGGANFNVQANQLSK--RPHV 121
Query: 349 IVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKT 408
+V TPGR E + + R ++ VLDEADR + ++ E I+ L + R
Sbjct: 122 VVGTPGRIAEHVLKTKSF--RTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKR---- 175
Query: 409 SIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFK 468
QT++F+AT S ++ K S ILK
Sbjct: 176 -----------QTLLFTATMS----DEISKLSSSILK----------------------- 197
Query: 469 SKPVIIDTNPEHKVTSQVKES-LIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLN 527
+P I T +++ +KE L + + V M + +VF + + + ++
Sbjct: 198 -RPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQGMSVIVFVSMCVTARVMS 256
Query: 528 AFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGI 587
L L S +H ++Q+ R + FKE + +L+ +D+ +RGLDIS +
Sbjct: 257 LALARLGFCSEALHGELSQEKREEAMRSFKES--------RFNVLVCTDLGSRGLDISHV 308
Query: 588 KHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
V+++ +P+S YIHR GRTAR G ++ + + Q + ++K+ L K
Sbjct: 309 DLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVT-QYDVEQIQKIEFTLEKK 361
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 135 bits (340), Expect = 2e-31
Identities = 118/440 (26%), Positives = 205/440 (45%), Gaps = 72/440 (16%)
Query: 212 QEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTL 271
+E V+P + + M L +L+G+ GF +P+ IQ +++P LK +++ +A +G+GKT
Sbjct: 20 EEVNVIPTF-DKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTA 78
Query: 272 AYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGL 331
+ I +++ L DT + LI +PTRELA Q+ QKV + + GG
Sbjct: 79 TFSISVLQSL--DTQVRETQALILSPTRELAVQI----QKVVLALGDYMNVQCHACIGGT 132
Query: 332 SIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFD 391
++ E I K D ++ TPGR +++ R +L R K+ LVLDEAD +L G +
Sbjct: 133 NL--GEDIRKLDYGQHVVSGTPGRVFDMIRRR-NLRTRAIKL--LVLDEADEMLNKGFKE 187
Query: 392 EFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGEN 451
+ I + L P G+ Q ++ SAT ++ L+ TS
Sbjct: 188 QLYDIYRYL-------------PPGA--QVVLLSATLPHEI---LEMTS----------- 218
Query: 452 NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVY-YFIMMYP 510
+F + P+ I + +K+ + ++R+ + + I +Y
Sbjct: 219 --------------KFMTDPIRILVKRDELTLEGIKQFFV---AVDREEWKFDTLIDLYD 261
Query: 511 GTTL----VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKV 566
T+ +FCN V L + + +H M QK+R ++ K +
Sbjct: 262 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDR--------DEVMKEFRA 313
Query: 567 GKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
G +LI++DV ARGLD+ + V++Y LP + ++YIHR GR+ R +GV++ Q+
Sbjct: 314 GTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK-QD 372
Query: 627 SMGPLRKLRKVLSTKKSSNP 646
+ LR + + ST+ P
Sbjct: 373 DVRILRDIEQYYSTQIDEMP 392
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 135 bits (340), Expect = 2e-31
Identities = 115/419 (27%), Positives = 196/419 (46%), Gaps = 66/419 (15%)
Query: 206 NVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKAST 265
++ ++ ++ P + ++ + +L+ ++ LGFT PT IQ + P+ALKG +++G A T
Sbjct: 125 DISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAET 184
Query: 266 GSGKTLAYGIPIIEQLIKDT---SNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKY 322
GSGKTLAY +P + + +D I LI PTRELA Q+ + +K + +
Sbjct: 185 GSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS-- 242
Query: 323 TILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEAD 382
+ GG Q R L+ I++ATPGR +++LE + R + LVLDEAD
Sbjct: 243 --TCIYGGAPKGPQIRDLR--RGVEIVIATPGRLIDMLECQHTNLKR---VTYLVLDEAD 295
Query: 383 RLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFT---KLDKT 439
R+L G + KI+ + R QT+++SAT+ ++ T + +
Sbjct: 296 RMLDMGFEPQIRKIVSQIRPDR---------------QTLLWSATWPREVETLARQFLRD 340
Query: 440 SWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERD 499
+K + G + + Q +N +++ + K +++ + +K+
Sbjct: 341 PYKAI--IGSTDLKANQSINQVIEIVPTPEK--------YNRLLTLLKQ----------- 379
Query: 500 LYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQ 559
+M L+F ++ L + IH Q R R L +FK
Sbjct: 380 -------LMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKS- 431
Query: 560 SEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
G+ I+ A+DVAARGLD+ IK V++Y P + + YIHR GRT R +G++
Sbjct: 432 -------GRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMA 483
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 135 bits (340), Expect = 2e-31
Identities = 107/426 (25%), Positives = 186/426 (43%), Gaps = 66/426 (15%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPII------EQLIK 283
+L GL+ G PT IQ++ +P L G +++G A TGSGKTL + +P+I E +
Sbjct: 188 ILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLP 247
Query: 284 DTSNDRSIGLIFTPTRELA---HQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERIL 340
N+ GLI P+RELA H++ H K + L++ GGL + + ++
Sbjct: 248 FERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAM-GGLPVSEALDVI 306
Query: 341 KYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
I+VATPGR +++L++ I L +DEADR++ G ++ I
Sbjct: 307 --SRGVHIVVATPGRLMDMLDKK---ILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFF 361
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNH 460
R QT++FSAT +++ N
Sbjct: 362 KGQR---------------QTLLFSATMP-------------------------KKIQNF 381
Query: 461 LMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAI 520
+ KPV I+ + V + + + +Y+ + L+F
Sbjct: 382 ARSAL---VKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKK 438
Query: 521 DSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAAR 580
V ++ +L + + IH Q+ R R ++ + +VGK +L+A+DVA++
Sbjct: 439 QDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAY--------RVGKKDVLVATDVASK 490
Query: 581 GLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLST 640
GLD ++HV++Y +P + Y+HR GRT R + +G++ + + L L+ +L
Sbjct: 491 GLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIE 550
Query: 641 KKSSNP 646
K P
Sbjct: 551 GKQEVP 556
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 135 bits (339), Expect = 3e-31
Identities = 122/450 (27%), Positives = 200/450 (44%), Gaps = 74/450 (16%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
PP + +S+ +D+ ++ + +TRPT +Q +IP+ ++M A TGSGKT A+
Sbjct: 174 PPHIENFSD-IDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAF 232
Query: 274 GIPIIEQLIKDTSNDR----------------SIGLIFTPTRELAHQVTDHLQKVWTKMN 317
+PI+ Q+ D + I L+ PTRELA Q+ + + K +
Sbjct: 233 LLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR----KFS 288
Query: 318 KLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLV 377
++ + GG I +Q R L + ++VATPGR ++++ER + F K LV
Sbjct: 289 YRSRVRPCVVYGGADIGQQIRDL--ERGCHLLVATPGRLVDMMERGKIGLD-FCKY--LV 343
Query: 378 LDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDL-FTKL 436
LDEADR+L G + +I++ D P TM+FSATF ++
Sbjct: 344 LDEADRMLDMGFEPQIRRIVEQ-----------DTMPPKGVRHTMMFSATFPKEIQMLAR 392
Query: 437 DKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPM 496
D I G + E + ++ + ++D + + +SL
Sbjct: 393 DFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDI-----LGATGSDSL------ 441
Query: 497 ERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKF 556
TLVF L FL + + IH +Q++R L +F
Sbjct: 442 ----------------TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 485
Query: 557 KEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG 616
+ GK IL+A+ VAARGLDIS ++HV+++ LP + Y+HR GRT R N G
Sbjct: 486 RS--------GKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLG 537
Query: 617 VSVMICSPQESMGPLRKLRKVLSTKKSSNP 646
++ + +++M + L +L K P
Sbjct: 538 LATSFFN-EKNMNITKDLLDLLVEAKQEVP 566
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 134 bits (338), Expect = 4e-31
Identities = 111/425 (26%), Positives = 199/425 (46%), Gaps = 63/425 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L +L G+ GF +P+ IQ ++IP+A+ G +I+ +A G+GKT A+ IP +E+
Sbjct: 49 EDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK- 107
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+K N + LI PTRELA Q + +V + K + + TGG ++ ++ IL+
Sbjct: 108 VKPKLN-KIQALIMVPTRELALQTS----QVVRTLGKHCGISCMVTTGGTNL--RDDILR 160
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ + I+V TPGR L+L R + + ++DEAD++L E+IL L
Sbjct: 161 LNETVHILVGTPGRVLDLASRK---VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL- 216
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
PT Q+++FSATF L + E ++ HL
Sbjct: 217 -----------PPT---HQSLLFSATFPLTV---------------------KEFMVKHL 241
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAID 521
K + + + + CL F + ++FCN+ +
Sbjct: 242 HKPYEINLMEELTLKGITQYYAFVEERQKLHCLNT-------LFSKLQINQAIIFCNSTN 294
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
V+ L + +L S + H+ M Q+ R + +F++ GK L+ SD+ RG
Sbjct: 295 RVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ--------GKVRTLVCSDLLTRG 346
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
+DI + V+++ P++A+ Y+HR GR+ R + G+++ + + + L K+ + L T+
Sbjct: 347 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN-LYKIEQELGTE 405
Query: 642 KSSNP 646
++ P
Sbjct: 406 IAAIP 410
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 134 bits (338), Expect = 4e-31
Identities = 107/418 (25%), Positives = 197/418 (46%), Gaps = 64/418 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M+L +L+G+ G GF +P+ IQ ++I G +++ +A +G+GKT + + I++++
Sbjct: 32 DDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI 91
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
D + L+ PTRELA Q+ QKV + + + IL GG S++ +R K
Sbjct: 92 --DHEDPHVQALVMAPTRELAQQI----QKVMSALGEYLNVNILPCIGGTSVRDDQR--K 143
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ ++V TPGR +++ RN ++I VLDEAD +L G D+ ++ + +
Sbjct: 144 LEAGIHVVVGTPGRVGDMINRN---ALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMP 200
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
+ Q ++ SAT ++ LD T N M + L
Sbjct: 201 Q---------------DVQVVLLSATMPSEV---LDVT-----------NRFMRNPIRIL 231
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAID 521
+KK + + ++ + + Q E +CL DLY + ++FCN
Sbjct: 232 VKKDE-----LTLEGIRQFYINVQKDEWKFDCL---CDLYNVVNVTQ----AVIFCNTRR 279
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
V L + + + +H M Q R + +F+ G +LI +D+ ARG
Sbjct: 280 KVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRS--------GSSRVLITTDILARG 331
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLS 639
+D+ + V++Y LP + + YIHR GR+ R +GV++ + ++ R+L+++ S
Sbjct: 332 IDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDA----RQLKEIES 385
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 134 bits (337), Expect = 5e-31
Identities = 122/424 (28%), Positives = 191/424 (44%), Gaps = 74/424 (17%)
Query: 208 DIDDQEPPVLPEWSENMDLSFT----VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKA 263
D+ D E +P + D +F V++ + GF +PT IQ ++ P+ L+G +++G A
Sbjct: 227 DLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVA 286
Query: 264 STGSGKTLAYGIPIIEQLIKDTS----NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKL 319
TG+GKTL Y +P L+ S +R L+ TPTRELA QV K K
Sbjct: 287 QTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK---- 342
Query: 320 NKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLD 379
++ GG + E+I + II+ATPGR +L N I LVLD
Sbjct: 343 GLRSVCVYGGG---NRDEQIEELKKGVDIIIATPGRLNDLQMSN---FVNLKNITYLVLD 396
Query: 380 EADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKT 439
EAD++L G + KIL +D +P QT++ SAT+ +
Sbjct: 397 EADKMLDMGFEPQIMKIL------------LDVRPDR---QTVMTSATWPHSV------- 434
Query: 440 SWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERD 499
H + + K ++ + S VK+++I E+
Sbjct: 435 --------------------HRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKW 474
Query: 500 LYVYYFIMMYPGT--TLVFCN--AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEK 555
++ F+ T +VF + A+ + L N+ + S +H Q++R + LE
Sbjct: 475 SHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVES--LHGDREQRDREKALEN 532
Query: 556 FKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNE 615
F K GK ILIA+D+A+RGLD+ + HV ++ PR+ + Y+HR GRT R
Sbjct: 533 F--------KTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRT 584
Query: 616 GVSV 619
GVS+
Sbjct: 585 GVSI 588
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 134 bits (337), Expect = 5e-31
Identities = 108/432 (25%), Positives = 199/432 (46%), Gaps = 83/432 (19%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L +L G+ GF RP+ IQ +SIP+AL G +I+ +A G+GKT A+ IP++E++
Sbjct: 134 EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI 193
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+D + + + V DH +V ++ K K ++ TGG S+ ++ I++
Sbjct: 194 DQDNNVIQ------------GNCVLDHTSQVCKELGKHLKIQVMVTTGGTSL--KDDIMR 239
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
++V TPGR L+L ++ ++ LV+DEAD+LL E ++ L
Sbjct: 240 LYQPVHLLVGTPGRILDLTKKGVCVL---KDCSVLVMDEADKLLSQEFQPSVEHLISFLP 296
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
++R+I ++FSATF + + D+
Sbjct: 297 ESRQI---------------LMFSATFPVTVKDFKDR----------------------- 318
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQV-------KESLIECLPMERDLYVYYFIMMYPGTTL 514
F + P +I+ E + + I CL F + ++
Sbjct: 319 -----FLTNPYVINLMDELTLKGITQFYAFVEERQKIHCLNT-------LFSKLQINQSI 366
Query: 515 VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
+FCN+++ V+ L + L S F IH+ M Q +R R F+ + +N L+
Sbjct: 367 IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRN--------LVC 418
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKL 634
+D+ RG+DI + V+++ P++A+ Y+HR GR+ R + G++V + + ++ L ++
Sbjct: 419 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRI 477
Query: 635 RKVLSTKKSSNP 646
+ L T+ P
Sbjct: 478 EQELGTEIKQIP 489
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 134 bits (337), Expect = 5e-31
Identities = 118/448 (26%), Positives = 205/448 (45%), Gaps = 73/448 (16%)
Query: 205 SNVDIDDQEP-PVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKA 263
SNV+ + E V+P ++ M+L +L+G+ GF +P+ IQ +SI +KG +++ +A
Sbjct: 12 SNVEFETSEDVEVIPTFNA-MNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQA 70
Query: 264 STGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYT 323
+G+GKT + I I++ L DT+ + L +PTRELA Q+ QKV + +
Sbjct: 71 QSGTGKTATFSISILQSL--DTTLRETQVLCLSPTRELAVQI----QKVILALGDMMNVQ 124
Query: 324 ILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADR 383
GG ++ E I K D I+ TPGR ++++R + R I LVLDEAD
Sbjct: 125 CHVCIGGTNL--GEDIRKLDYGQHIVSGTPGRVFDMIKRR---VLRTRAIKMLVLDEADE 179
Query: 384 LLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKI 443
+L G ++ + + L A Q ++ SAT ++ L+ TS
Sbjct: 180 MLNKGFKEQIYDVYRYLPPAT---------------QVVLISATLPHEI---LEMTS--- 218
Query: 444 LKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVY 503
+F + P+ I + +K+ + +ER+ + +
Sbjct: 219 ----------------------KFMTDPIRILVKRDELTLEGIKQFFV---AVEREEWKF 253
Query: 504 YFIM-MYPGTTL----VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKE 558
+ +Y T+ +FCN V L + + +H M QK R +
Sbjct: 254 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKER--------D 305
Query: 559 QSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
+ K + G+ +LI +DV ARG+D+ + V++Y LP + ++YIHR GR+ R +GV+
Sbjct: 306 EIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 365
Query: 619 VMICSPQESMGPLRKLRKVLSTKKSSNP 646
+ + + LR + + ST+ P
Sbjct: 366 INFVK-SDDIRILRDIEQYYSTQIDEMP 392
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 133 bits (335), Expect = 9e-31
Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 64/396 (16%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
+L+ + GF PT IQ+++IP+ L G ++ A TGSGKTLA+ IPI+ QL K +N
Sbjct: 68 LLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL-KQPANKG 126
Query: 290 SIGLIFTPTRELAHQVTDHLQKV----WTKMNKLNKYTILSLTGGLSIQKQERILKYDGS 345
LI +PTRELA Q+ L K+ +++ ++K + + G K K+D
Sbjct: 127 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSK-----KFD-- 179
Query: 346 GRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARK 405
I+V TP R + LL+++P I A ++ LV+DE+D+L +DG +++ +
Sbjct: 180 --ILVTTPNRLIYLLKQDPPGID-LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS 236
Query: 406 IKTSIDGKPTGSGWQTMIFSATFSLDL--FTKLDKTSWKILKTAGGENNEMEQVLNHLMK 463
K + +FSATF+ D+ + KL+ + I + G N+ +E V L+
Sbjct: 237 HKV-----------RRAMFSATFAYDVEQWCKLNLDN-VISVSIGARNSAVETVEQELLF 284
Query: 464 KIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSV 523
V +T + VK+ + LVF +I+
Sbjct: 285 --------VGSETGKLLAMRELVKKG-------------------FNPPVLVFVQSIERA 317
Query: 524 KKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLD 583
K+L L I+ IH+ Q+ R + F + GK +LI + + ARG+D
Sbjct: 318 KELFHELIYEGINVDVIHAERTQQQRDNTVHSF--------RAGKIWVLICTALLARGID 369
Query: 584 ISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSV 619
G+ V++Y P S+ YIHR GRT R N+G ++
Sbjct: 370 FKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAI 405
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 133 bits (335), Expect = 9e-31
Identities = 122/454 (26%), Positives = 203/454 (43%), Gaps = 78/454 (17%)
Query: 207 VDIDDQEPPVLPEWSENMDLSFT--VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKAS 264
V+ +D PP+ MD+ F +L+ L G PT IQ++ +P+ L G +++G A
Sbjct: 87 VNGEDIPPPI----KNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAF 142
Query: 265 TGSGKTLAYGIPII------EQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNK 318
TGSGKTL + +P+I E ++ + + I L+ P+RELA Q D +++ + +
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 319 LNKYTILSL--TGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTL 376
+ SL GG+ ++ Q ++K I+VATPGR ++L + + L
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQLDVVK--KGVHIVVATPGRLKDILAKKKMSLD---ACRLL 257
Query: 377 VLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATF--SLDLF- 433
LDEADRL+ G D+ + R QT++FSAT + +F
Sbjct: 258 TLDEADRLVDLGFEDDIRHVFDHFKSQR---------------QTLLFSATMPAKIQIFA 302
Query: 434 -TKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIE 492
+ L K + AG N ++ Q + ++ + E K+ L+E
Sbjct: 303 TSALVKPVTVNVGRAGAANLDVIQEVEYVKQ---------------EAKIV-----YLLE 342
Query: 493 CLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRN 552
CL L+FC V ++ +L + + IH Q++R
Sbjct: 343 CLQKTTP------------PVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYA 390
Query: 553 LEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARG 612
+ F K GK +L+A+DVA++GLD I+HV++Y +P + Y+HR GRT R
Sbjct: 391 ISLF--------KAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRC 442
Query: 613 DNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNP 646
G++ + +S L L+ +L K P
Sbjct: 443 GKTGIATTFINKNQSEITLLDLKHLLQEAKQRIP 476
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 133 bits (334), Expect = 1e-30
Identities = 113/400 (28%), Positives = 187/400 (46%), Gaps = 60/400 (15%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD---TS 286
VL + GF +PT IQ + P+AL G +++G A+TGSGKTL+Y +P I +
Sbjct: 124 VLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAP 183
Query: 287 NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSG 346
D I L+ PTRELA Q+ Q +K ++ + GG + K ++I
Sbjct: 184 GDGPIVLVLAPTRELAVQI----QTECSKFGHSSRIRNTCVYGG--VPKSQQIRDLSRGS 237
Query: 347 RIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKI 406
I++ATPGR +++LE + R + LVLDEADR+L G + KI+ + R
Sbjct: 238 EIVIATPGRLIDMLEIGKTNLKR---VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-- 292
Query: 407 KTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQ 466
QT+++SAT+ + + + A N+ QV Q
Sbjct: 293 -------------QTLMWSATWPKE-----------VKQLAADYLNDPIQV--------Q 320
Query: 467 FKSKPVIIDTNPEHKVTSQVKESLIECLPMER-DLYVYYFIMMYPGTTLVFCNAIDSVKK 525
S ++ + H +T Q+ E + + +R + Y+ TL+F +
Sbjct: 321 VGS----LELSASHNIT-QIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDD 375
Query: 526 LNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDIS 585
+ +L + IH Q+ R L++F+ G+ I++A+DVAARG+D+
Sbjct: 376 ITKYLREDGWPALAIHGDKDQRERDWVLQEFRN--------GRSPIMVATDVAARGIDVK 427
Query: 586 GIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQ 625
GI +V++Y +P + + Y+HR GRT R G ++ + Q
Sbjct: 428 GINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQ 467
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 133 bits (334), Expect = 1e-30
Identities = 126/460 (27%), Positives = 201/460 (43%), Gaps = 97/460 (21%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKG-HNIMGKASTGSGKTLAYGIPIIEQ 280
E L +L+ + +GF PT IQ +IPLAL+ +I+ KA+TGSGKTLAY IP+IE
Sbjct: 20 EAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIET 79
Query: 281 LIK------DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQ 334
+++ + + ++G+I PTRELA QV + L+K+ +K L+++ +S
Sbjct: 80 ILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSK--DIRTLNISSDMSDS 137
Query: 335 KQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFE 394
+L IIV TPG+ L+LL+ + I ++ LV+DE D +L G+ D+
Sbjct: 138 VLSTLLM--DQPEIIVGTPGKLLDLLQTKINSIS-LNELKFLVVDEVDLVLTFGYQDDLN 194
Query: 395 KILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDK--TSWKILKTAGGE-N 451
KI + L P QT + SAT + D+ K S ILK E N
Sbjct: 195 KIGEYL-------------PLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEIN 241
Query: 452 NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPG 511
++L + +K +F + + C YV + + + G
Sbjct: 242 KNQNKLLQYYVKVSEF--------------------DKFLLC-------YVIFKLNLIKG 274
Query: 512 TTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFK-------------- 557
TL+F N ID +L + I S ++S + +R +++F
Sbjct: 275 KTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTE 334
Query: 558 ---------------EQSEKNSKVGKP----------TILIASDV---AARGLDISGIKH 589
E E+ S G+P + + D +RG+D +
Sbjct: 335 YIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVAC 394
Query: 590 VLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMG 629
VL++ LP +A Y+HR GRTARG G ++ P + G
Sbjct: 395 VLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVPLKEFG 434
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 133 bits (334), Expect = 1e-30
Identities = 121/418 (28%), Positives = 200/418 (46%), Gaps = 65/418 (15%)
Query: 223 NMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI 282
N +S +K L G G T IQ+K+ +G +++ +A TG+GKT ++ IP+IE+L
Sbjct: 141 NFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQ 200
Query: 283 KDTSNDRSIG----LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQER 338
++ + L+ PTRELA+QV + + K+ ++ GG S Q Q
Sbjct: 201 RNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKL------SVACFYGGTSYQSQIN 254
Query: 339 ILKYDGSGRIIVATPGRFLELLERNP-DLIPRFAKIDTLVLDEADRLLQDGHFDEFEKIL 397
++ I+V TPGR + L+ DL +K+ +VLDE D++L G ++ E I+
Sbjct: 255 HIR--NGIDILVGTPGRIKDHLQSGRLDL----SKLRHVVLDEVDQMLDLGFAEQVEDII 308
Query: 398 KLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQV 457
KT + P QT++FSAT ++ K + K +K + EQV
Sbjct: 309 H-----ESYKTDSEDNP-----QTLLFSATCPQWVY----KVAKKYMK------SRYEQV 348
Query: 458 LNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGT---TL 514
L+ K+ K + V+ I+C +R + + +Y G+ +
Sbjct: 349 --DLVGKM-------------TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAI 393
Query: 515 VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
+FC +V ++ A ++K ++ +H +AQ R L+ F+E S K +L+A
Sbjct: 394 IFCETKKNVTEM-AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFK--------VLVA 444
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLR 632
++VAARGLDI + V+ P+ + YIHRSGRT R G+ + P+E G LR
Sbjct: 445 TNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE-RGQLR 501
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 133 bits (334), Expect = 1e-30
Identities = 132/457 (28%), Positives = 216/457 (46%), Gaps = 57/457 (12%)
Query: 203 FSSNVDIDDQEPPVLPEWSENM---DLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNI 259
F ++V + + PV + ++ D+ ++ + + G+TR T IQ ++PL G +I
Sbjct: 279 FDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDI 338
Query: 260 MGKASTGSGKTLAYGIPIIEQLI--KDTSNDRSIG-----LIFTPTRELAHQVTDHLQKV 312
+ A TGSGKT A+ +PI+ +LI KD + G +I TPTRELA Q+ + +K
Sbjct: 339 LACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRK- 397
Query: 313 WTKMNKLNKYTILSLTGGLSI-QKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFA 371
+ + I + GG+++ + +I+K IIV T GR E D +
Sbjct: 398 ---FSYQSVMEIKPVYGGINVGYNKSQIMK---GCTIIVGTIGRVKHFCE---DGAIKLD 448
Query: 372 KIDTLVLDEADRLLQD-GHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSL 430
K LVLDEADR++ G E E+I+ + P QTM+FSATF
Sbjct: 449 KCRYLVLDEADRMIDSMGFGPEIEQII-----------NYKNMPKNDKRQTMMFSATFP- 496
Query: 431 DLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESL 490
+ + + + K+L+ E + KI +K VI + + TS+V + L
Sbjct: 497 ---SSVQEAARKLLR---------EDYTMITIDKIGAANKCVIQEFELCDR-TSKV-DKL 542
Query: 491 IECLPMERDLYVYYFIM-MYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNR 549
++ L ++ D Y ++ T+VF L + ++ ++ + IH + QK R
Sbjct: 543 LKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKER 602
Query: 550 LRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRT 609
L+ F+ G +LIA+ V RGLDI G+ HV++Y +P + D YIHR GRT
Sbjct: 603 SAALKLFRS--------GAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRT 654
Query: 610 ARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNP 646
R N G + S + + L +L + L+ + P
Sbjct: 655 GRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVP 691
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 133 bits (334), Expect = 1e-30
Identities = 125/417 (29%), Positives = 188/417 (44%), Gaps = 71/417 (17%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
D PPV ++DL + + + RPT +Q +IP+ L ++M A TGSGKT
Sbjct: 145 DVPPPV--NTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKT 202
Query: 271 LAYGIPIIEQLIKDTSNDRSIG--------LIFTPTRELAHQVTDHLQKVWTKMNKLNKY 322
A+ PII ++KD +R G +I +PTRELA Q+ D + K +
Sbjct: 203 AAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAK----KFSYQTGV 258
Query: 323 TILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEAD 382
++ GG I +Q R L + I+VATPGR +LLER I L LDEAD
Sbjct: 259 KVVVAYGGTPIHQQLREL--ERGCDILVATPGRLNDLLER---ARVSMQMIRFLALDEAD 313
Query: 383 RLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWK 442
R+L G FE + RKI +D P G QTM+FSATF +
Sbjct: 314 RMLDMG----FEP------QIRKIVEQMDMPPRGVR-QTMLFSATFPSQI---------- 352
Query: 443 ILKTAGGENNEMEQVLNHLMKKI-QFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLY 501
+ + + N++ + + S +I E S + L++ L +R+
Sbjct: 353 -------QRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRET- 404
Query: 502 VYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSE 561
T + +++ +N F + IH Q+ R E +
Sbjct: 405 --------QDKTKRGADTLENWLCMNEF------PATSIHGDRTQQER--------EVAL 442
Query: 562 KNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVS 618
++ K G+ IL+A+DVAARGLDI + HV+++ LP D Y+HR GRT R G++
Sbjct: 443 RSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIA 499
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 133 bits (334), Expect = 1e-30
Identities = 122/425 (28%), Positives = 187/425 (43%), Gaps = 76/425 (17%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
PP + + +++ L+ + ++ + +PT +Q +IP+ + G ++M A TGSGKT A+
Sbjct: 291 PPNITSF-DDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAF 349
Query: 274 GIPIIEQLIK-------------DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLN 320
+PI+ Q+ + +GL+ PTRELA Q+ + +K + +
Sbjct: 350 LVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYR----S 405
Query: 321 KYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDE 380
+ L GG + +Q R L D +IVATPGR +++ R I LVLDE
Sbjct: 406 RMRPAVLYGGNNTSEQMREL--DRGCHLIVATPGRLEDMITRGK---VGLENIRFLVLDE 460
Query: 381 ADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDL-FTKLDKT 439
ADR+L G FE + R+I ++ PTG QT++FSATF + D
Sbjct: 461 ADRMLDMG----FEP------QIRRIVEQLNMPPTGQR-QTLMFSATFPKQIQELASDFL 509
Query: 440 SWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID------TNPEHKVTSQVKESLIEC 493
S I G + E + ++ + + ++D PE+ K+SL
Sbjct: 510 SNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEY-----TKDSL--- 561
Query: 494 LPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNL 553
TL+F L FL IH QK R L
Sbjct: 562 -------------------TLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEAL 602
Query: 554 EKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGD 613
F+ G IL+A+ VAARGLDI +KHV+++ LP + Y+HR GRT R
Sbjct: 603 RCFRS--------GDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMG 654
Query: 614 NEGVS 618
N GV+
Sbjct: 655 NLGVA 659
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 132 bits (333), Expect = 2e-30
Identities = 122/446 (27%), Positives = 209/446 (46%), Gaps = 78/446 (17%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+M L +L+ ++ LG++RPT IQ K+IPLAL+G +++ +A TGSGKT AY IP+++ L
Sbjct: 10 EHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLL 69
Query: 282 IKDTSNDRSI-----GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQ 336
+ + + GL+ PT+ELA Q +Q++ T + + +S Q+
Sbjct: 70 LHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRA 129
Query: 337 ERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKI 396
+ K D ++V TP R L L++ D + ++ LV+DEAD L G +E + +
Sbjct: 130 VLMEKPD----VVVGTPSRILSHLQQ--DSLKLRDSLELLVVDEADLLFSFGFEEELKSL 183
Query: 397 LKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQ 456
L L + +Q + SATF+ D+ + LK E
Sbjct: 184 LCHLPRI---------------YQAFLMSATFNEDV---------QALK---------EL 210
Query: 457 VL-NHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIM---MYPGT 512
+L N + K+Q P P+ Q+++ + C E + Y ++ + G
Sbjct: 211 ILHNPVTLKLQESQLP-----GPD-----QLQQFQVVCETEEDKFLLLYALLKLSLIRGK 260
Query: 513 TLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKE-------------- 558
+L+F N ++ +L FL I + ++ + ++R + +F +
Sbjct: 261 SLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL 320
Query: 559 -QSEKNSKVGK-PTILIASDV---AARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGD 613
K + G+ P ASD ARG+D + VL++ LP + + YIHR+GRTAR +
Sbjct: 321 GAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARAN 380
Query: 614 NEGVSVMICSPQESMGPLRKLRKVLS 639
N G+ + P E L K+ ++LS
Sbjct: 381 NPGIVLTFVLPTEQF-HLGKIEELLS 405
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 132 bits (333), Expect = 2e-30
Identities = 118/394 (29%), Positives = 180/394 (44%), Gaps = 71/394 (18%)
Query: 245 IQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSND-RSIG-------LIFT 296
IQ + + L G +++G+A TG GKTLA+ +PI+E L+ + R +G L+
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLL 181
Query: 297 PTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRF 356
PTRELA QV + + L GG S QE LK I+V TPGR
Sbjct: 182 PTRELAKQVAADFDAYGGSLG----LSSCCLYGGDSYPVQEGKLKRGVD--IVVGTPGRI 235
Query: 357 LELLER-NPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
+ +ER N D F+ + VLDEAD +L+ G ++ E IL + + K+
Sbjct: 236 KDHIERQNLD----FSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKV--------- 282
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID 475
QT++FSAT SW ++ + N +K+ Q K + +
Sbjct: 283 ----QTLLFSATLP----------SW------------VKNISNRFLKRDQ---KTIDLV 313
Query: 476 TNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYP--GTTLVFCNAIDSVKKLNAFLNNL 533
N + K ++ V+ I C + I Y G T++F V +L+ L+
Sbjct: 314 GNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDG- 372
Query: 534 KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHY 593
S +H + Q R L F+ GK L+A++VAARGLDI+ ++ ++
Sbjct: 373 ---SRALHGEIPQSQREVTLAGFRN--------GKFATLVATNVAARGLDINDVQLIIQC 421
Query: 594 HLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
PR + YIHRSGRT R N GV+V + ++S
Sbjct: 422 EPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKS 455
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 132 bits (332), Expect = 2e-30
Identities = 121/415 (29%), Positives = 190/415 (45%), Gaps = 66/415 (15%)
Query: 237 LGFTRPTEIQLKSIPLAL---KGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSI-- 291
L F PT IQ +IP + + +G ASTGSGKTLA+ IPI+ ++ + S+
Sbjct: 192 LRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKI 251
Query: 292 -----GLIFTPTRELAHQVTDHLQKVWTKMNKLNKY--TILSLTGGLSIQKQERILKYDG 344
LI PTREL Q+ QKV +K + Y ++S+ GG S+ +E
Sbjct: 252 IDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSL--EEISFSLSE 309
Query: 345 SGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKAR 404
I+VATPGR ++ LE + + +++TLVLDEAD+++ G D+ IL
Sbjct: 310 GCDILVATPGRLIDSLENH---LLVMKQVETLVLDEADKMIDLGFEDQVTNIL------T 360
Query: 405 KIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKK 464
K+ + D + QT++F+AT + I K A G
Sbjct: 361 KVDINAD---SAVNRQTLMFTATMTP-----------VIEKIAAG--------------- 391
Query: 465 IQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLY--VYYFIMMYPGTTLVFCNAIDS 522
+ KPV E + + + ++E + D + + + Y ++F N +
Sbjct: 392 --YMQKPVYATIGVE-TGSEPLIQQVVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQT 448
Query: 523 VKKL-NAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
L F + +H S +Q+ R +L+ F + K I+IA++VAARG
Sbjct: 449 ADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLF--------RTNKVQIMIATNVAARG 500
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRK 636
LDI + V+++ + + D YIHR GRT R NEG +V S E +R+L K
Sbjct: 501 LDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIRELYK 555
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 132 bits (331), Expect = 3e-30
Identities = 120/411 (29%), Positives = 196/411 (47%), Gaps = 62/411 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+ +D+S + +GL + PT IQ + P L G +++G A TGSGKT+A+GIP + Q
Sbjct: 170 DELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPAL-QY 226
Query: 282 IKDTSNDRSIG--LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERI 339
+ S+++S+ L+ +PTRELA Q ++L + N + + GG +Q R
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTN----LKAVVVYGGAPKSEQARA 282
Query: 340 LKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKL 399
K + +I+ TPGR L+L+ D +++ LVLDEADR+L G + I+
Sbjct: 283 AK---NASVIIGTPGRLLDLIN---DGSIDCSQVGYLVLDEADRMLDTGFEQDIRNII-- 334
Query: 400 LGKARKIKTSIDGKPTGSG-WQTMIFSATFSLDLFTKLDKTSWK--ILKTAGGENNEMEQ 456
S PT +G QT+ FSAT+ + L T K + T G + Q
Sbjct: 335 ---------SHTPDPTRNGSRQTVFFSATWP-ESVRALAATFLKDPVKITIGSDELAASQ 384
Query: 457 VLNHLMKKIQF-KSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLV 515
+ +++ + +SK ++D ++S K+ I L+
Sbjct: 385 NITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKI----------------------LI 422
Query: 516 FCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIAS 575
F ++ L K + IH M+Q RL+ L FK GK +L+A+
Sbjct: 423 FVLYKKEAARVEGTLAR-KYNVVGIHGDMSQGARLQALNDFKS--------GKCPVLVAT 473
Query: 576 DVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
DVAARGLDI ++ V++ P + + Y+HR GRT R + +G ++ +PQ+
Sbjct: 474 DVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQD 524
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 131 bits (329), Expect = 5e-30
Identities = 112/412 (27%), Positives = 186/412 (44%), Gaps = 68/412 (16%)
Query: 263 ASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKY 322
A TG+GKTLA+ IPI+++L D LI TPTRELA Q+ + +T + K
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPYG--IYALILTPTRELAFQIAEQ----FTALGKPITL 243
Query: 323 TILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPR-FAKIDTLVLDEA 381
+ GG S+ Q R L ++VATPGR +L+E +PD I + F KI VLDEA
Sbjct: 244 KCSVIVGGRSLIHQARELSE--RPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEA 301
Query: 382 DRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSW 441
DR+L+ + D+ + I + + + R QT++ SAT + ++
Sbjct: 302 DRMLEGQYNDQLKPIFESISEKR---------------QTLLLSATITNNI--------- 337
Query: 442 KILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLY 501
N + +V + K K + ++++ + C +D Y
Sbjct: 338 ----------NMLHRVSTRKPYFFEDKGK-------DDESTVDRLEQKYVVCPVAVKDAY 380
Query: 502 VYYFIMMY-----PGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKF 556
+ Y + Y + ++F + L L +HS + QK RL L F
Sbjct: 381 LVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAF 440
Query: 557 KEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG 616
+ ++ + ++I +DVA+RGLDI + V+++++P+ YIHR GR+AR G
Sbjct: 441 RSKTLQ--------VIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFG 492
Query: 617 VSVMICSPQESMGPLRKLRKVLSTK----KSSNPRKTKWQNDVPMLPLEPDI 664
S + Q + L+ + +V+ K K S TK+ V + E ++
Sbjct: 493 -SALSFVTQYDVELLQAVEQVIGKKLDELKVSPKHVTKYVTQVLVAKKEAEL 543
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 131 bits (329), Expect = 5e-30
Identities = 107/404 (26%), Positives = 185/404 (45%), Gaps = 72/404 (17%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M+L +L+G+ G GF +P+ IQ ++I ++G +++ +A +G+GKT + I I++Q+
Sbjct: 19 DDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQI 78
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
DTS LI PTRELA Q+ Q+V + + K + GG ++++ RIL
Sbjct: 79 --DTSIRECQALILAPTRELATQI----QRVVMALGEYMKVHSHACIGGTNVREDARIL- 131
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ ++V TPGR +++ R + R I VLDEAD +L G D+ + + K+L
Sbjct: 132 -ESGCHVVVGTPGRVYDMINRK---VLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKML- 186
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
Q ++ SAT D+ E+ +
Sbjct: 187 --------------PPDVQVILLSATMPPDVL-------------------EVSRC---- 209
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIEC------LPMERDLYVYYFIMMYPGTTLV 515
F PV I E +K+ + L DLY I +++
Sbjct: 210 -----FMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQ----SVI 260
Query: 516 FCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIAS 575
FCN V +L ++ + +H M Q++R +++F+ G +LI +
Sbjct: 261 FCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRS--------GSSRVLITT 312
Query: 576 DVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSV 619
D+ ARG+D+ + V++Y LP + + YIHR GR R +GV++
Sbjct: 313 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAI 356
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 131 bits (329), Expect = 5e-30
Identities = 121/412 (29%), Positives = 185/412 (44%), Gaps = 57/412 (13%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E L V++ + GFT+PT IQ + P+AL G +++G A TGSGKTLAY +P I +
Sbjct: 240 EESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHI 299
Query: 282 IKD---TSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTI--LSLTGGLSIQKQ 336
+ I L+ PTRELA Q+ Q V L K I + GG S Q
Sbjct: 300 GNQPPIIRGEGPIALVLAPTRELAQQI----QSVVRDYGHLCKPEIRHTCIFGGSSKVPQ 355
Query: 337 ERILKYDGSGRIIVATPGRFLELLE-RNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEK 395
R L D +I+ATPGR ++ LE RN +L + LVLDEADR+L G + K
Sbjct: 356 ARDL--DRGVEVIIATPGRLIDFLENRNTNL----QRCTYLVLDEADRMLDMGFEPQIRK 409
Query: 396 ILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEME 455
I++ + R Q +++SAT+ + + AG N+
Sbjct: 410 IIEQIRPDR---------------QVVMWSATWPKE-----------VQALAGDFLNDYI 443
Query: 456 QVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLV 515
Q+ M + I++ E + ++ L E P++ +V
Sbjct: 444 QINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNS-------GNNGNKIIV 496
Query: 516 FCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIAS 575
F V+ + + ++ IH Q R L+ F+ GK ILIA+
Sbjct: 497 FVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRN--------GKSNILIAT 548
Query: 576 DVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
DVA+RGLD+ +++V++Y P S++ Y+HR GRT R G + +P +
Sbjct: 549 DVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNA 600
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 130 bits (327), Expect = 8e-30
Identities = 122/449 (27%), Positives = 212/449 (47%), Gaps = 77/449 (17%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E++ ++ + K + GF + TE+QLK IP LKG +++ ++ TG+GKT+A+ PI+ +
Sbjct: 7 EDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCI 66
Query: 282 IKDTSNDRS--IGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERI 339
R ++ TPTRELA Q+ + + L GG+SI++ +
Sbjct: 67 YDGKGRGRPGVTAVVITPTRELALQIRE--------VAGLFDVKCECFIGGMSIEEDYKR 118
Query: 340 LKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKL 399
+K + S I V TPGR LE++ + +F+ + LVLDEAD+LL G F+ EK+++L
Sbjct: 119 MKEEFS--IAVGTPGRLLEIVGKE---TKKFSSLSHLVLDEADKLLGFG-FE--EKLMQL 170
Query: 400 LGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLN 459
L K + + T +FSAT + D KL + + + NNEM L
Sbjct: 171 LAKLPRNRV------------TGLFSATRN-DSVDKLSRVFLRNPVSINVGNNEMPVALE 217
Query: 460 HLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNA 519
+++ V+ K ++ + R V++ C+
Sbjct: 218 YIV-------------------VSPMEKLLVLMDIVTGRRCIVFF----------ATCSE 248
Query: 520 IDSVKKL--NAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDV 577
+D L A N+ +IH ++Q R R E+F + + +L +DV
Sbjct: 249 VDFFSGLVSRAGFGNI----CKIHGKISQDERNRVYEEFFQ---------RDGLLFCTDV 295
Query: 578 AARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE-SMGPLRKLRK 636
AARG+D G+ V+H+ +P+ +HRSGRTAR ++G SV+ P E + KL+
Sbjct: 296 AARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMPNERAYVEFLKLKG 355
Query: 637 VLSTKKSSNPRKTKWQNDVPMLPLEPDIV 665
+ + + S + + D+ + + P+++
Sbjct: 356 IPAVESSYRMKSSLSYQDIKSM-ISPELL 383
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 130 bits (326), Expect = 1e-29
Identities = 114/413 (27%), Positives = 187/413 (44%), Gaps = 74/413 (17%)
Query: 226 LSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDT 285
L+ +L + L + +P IQ +++P+ + G + +G A TGSGKTL + +P++ IKD
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH-IKDQ 594
Query: 286 ----SNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+ D IGL+ PTREL Q+ ++K +K + + GG + +Q LK
Sbjct: 595 PPVEAGDGPIGLVMAPTRELVQQIHSDIRK----FSKPLGIRCVPVYGGSGVAQQISELK 650
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
I+V TPGR +++L + I ++ LV+DEADR+ G + +I++ +
Sbjct: 651 R--GTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIR 708
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
R QT++FSATF + T K VLN
Sbjct: 709 PER---------------QTVLFSATFPRQVETLARK------------------VLN-- 733
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMM----YPGTTLVFC 517
KPV I V + + L+E P E D ++ ++ G LVF
Sbjct: 734 --------KPVEIQVGGRSVVNKDITQ-LVEVRP-ESDRFLRLLELLGEWSEKGKILVF- 782
Query: 518 NAIDSVKKLNAFLNNLKISSF---QIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
+ S +K +A ++ SS+ +H Q +R + FK +LIA
Sbjct: 783 --VQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDV--------CNLLIA 832
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
+ VAARGLD+ ++ V+++ P + Y+HR GRT R +G +V S ++
Sbjct: 833 TSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDA 885
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 130 bits (326), Expect = 1e-29
Identities = 117/448 (26%), Positives = 206/448 (45%), Gaps = 65/448 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E + L ++L L GF+ PT++Q ++P +KGH+ + ++ TGSGKTLAY +PI+ ++
Sbjct: 113 EELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEI 172
Query: 282 --------IKDTSNDRSI---GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGG 330
+ ND+ +I P+REL Q+ ++K+ + +++ + L GG
Sbjct: 173 GPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKL---LGPVHRRMVQQLVGG 229
Query: 331 LSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDT-----LVLDEADRLL 385
+ +QE LK I+V TPGR E I + K+ T LVLDE D LL
Sbjct: 230 ANRMRQEEALK-KNKPAIVVGTPGRIAE--------ISKGGKLHTHGCRFLVLDEVDELL 280
Query: 386 QDGHFDEFEKILKLLGKARKI--KTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKI 443
++ +IL+ +GK K +D + + QT++ SAT + S +
Sbjct: 281 SFNFREDIHRILEHVGKRSGAGPKGEVDER---ANRQTILVSATVPFSVIRAAKSWSHEP 337
Query: 444 LKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVY 503
+ + ++ V S PV+ T + Q+ ++ I+ LP Y
Sbjct: 338 VLVQANKVTPLDTVQ---------PSAPVMSLTPTTSEADGQI-QTTIQSLPPALKHYYC 387
Query: 504 YFIMMYPGTTLVFCNAIDSVKKLNAFLNNLK-------------ISSFQIHSSMAQKNRL 550
+ TL C + + AF+N+ + ++S ++H + + R
Sbjct: 388 ISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRS 447
Query: 551 RNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTA 610
L+KFK G+ +L+ ++++ARGLD++ V++ LP A Y HR+GRT
Sbjct: 448 TVLKKFKN--------GEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTG 499
Query: 611 RGDNEGVSVMICSPQESMGPLRKLRKVL 638
R +G V +C + + ++K+ K L
Sbjct: 500 RLGRKGTVVTVCE-ESQVFIVKKMEKQL 526
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 129 bits (325), Expect = 1e-29
Identities = 125/435 (28%), Positives = 196/435 (44%), Gaps = 66/435 (15%)
Query: 215 PVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYG 274
PVL + N + V+ ++ FT PT IQ + P+AL G +++G A TGSGKTL+Y
Sbjct: 92 PVLNFYEANFPAN--VMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 149
Query: 275 IPIIEQLIKDTSNDRSIG---LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGL 331
+P I + +R G L+ PTRELA QV Q+V + + + + GG
Sbjct: 150 LPAIVHINHQPFLERGDGPICLVLAPTRELAQQV----QQVAAEYCRACRLKSTCIYGG- 204
Query: 332 SIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFD 391
K +I + I +ATPGR ++ LE + R LVLDEADR+L G
Sbjct: 205 -APKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR---TTYLVLDEADRMLDMGFEP 260
Query: 392 EFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGEN 451
+ KI+ + R QT+++SAT+ ++ + + LK N
Sbjct: 261 QIRKIVDQIRPDR---------------QTLMWSATWP----KEVRQLAEDFLKDYIHIN 301
Query: 452 -NEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYP 510
+E NH + +I V D + K+ ++E + E
Sbjct: 302 IGALELSANHNILQI----VDVCHDVEKDEKLIRLMEEIMSE----------------KE 341
Query: 511 GTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPT 570
T+VF +L + + IH +Q+ R L +FK GK
Sbjct: 342 NKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--------GKAP 393
Query: 571 ILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGP 630
ILIA+DVA+RGLD+ +K V++Y P S++ YIHR GRTAR G + +P
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN---- 449
Query: 631 LRKLRKVLSTKKSSN 645
++++ ++S + +N
Sbjct: 450 IKQVSDLISVLREAN 464
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 129 bits (325), Expect = 1e-29
Identities = 109/408 (26%), Positives = 200/408 (48%), Gaps = 68/408 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E++ L +LK + +G+ P+ +Q+ SIP L G N++ ++ G+GKT +Y +P++ +
Sbjct: 111 ESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMI 170
Query: 282 IKDTSNDRSI-GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERIL 340
S++ SI G+I P RELA Q++ +++ +M++ + GG S+ Q+ I+
Sbjct: 171 ---NSSELSIQGIILVPIRELALQISRNVK----RMSEGTGVISAPVVGGTSM--QDDII 221
Query: 341 KYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
+ ++V TPGR ++L+E+ + +K LV DEAD+LL + K+L LL
Sbjct: 222 RVSNGVHVMVGTPGRIVDLVEKR---VGTLSKRVILVFDEADKLLDVTFGETVTKLLDLL 278
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVL-N 459
+ + Q +++SATF + G M+ L
Sbjct: 279 PREK---------------QMLLYSATFPYFV--------------TGFIRRYMKNPLCI 309
Query: 460 HLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIM-MYPGTTLVFCN 518
+LMK++ PV VK+ P E+ L + ++ + ++FCN
Sbjct: 310 NLMKEL----APV------------GVKQFYTYVKPSEKLLCLKSLLLRLSINQCVIFCN 353
Query: 519 AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
+I +V+ L + + + S+ IHS MAQ++R F + GK IL+A+D+
Sbjct: 354 SIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLK--------GKCKILVATDLI 405
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
RG+D +V+++ + +S + Y+HR GR R GV++ + + +E
Sbjct: 406 TRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEE 453
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 129 bits (325), Expect = 1e-29
Identities = 118/420 (28%), Positives = 187/420 (44%), Gaps = 64/420 (15%)
Query: 212 QEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTL 271
Q PP L + E +L+ + GF+ PT IQ +S P+A++G +I+ A TGSGKTL
Sbjct: 152 QVPPPLMSF-EATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 272 AYGIP--IIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTG 329
Y IP + Q I++ S L+ +PTRELA Q+ Q+ K + ++ + L G
Sbjct: 211 GYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI----QEEAVKFGRSSRISCTCLYG 266
Query: 330 GLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGH 389
G Q R L + I+VATPGR ++LE + +I LVLDEADR+L G
Sbjct: 267 GAPKGPQLRDL--ERGADIVVATPGRLNDILEMRRISL---RQISYLVLDEADRMLDMGF 321
Query: 390 FDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGG 449
+ KI+K + R QT++++AT+
Sbjct: 322 EPQIRKIVKEIPTKR---------------QTLMYTATW--------------------- 345
Query: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFI-MM 508
+ + + + V I E + + + PME+ + +
Sbjct: 346 -----PKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQ 400
Query: 509 YPGT-TLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVG 567
PG+ ++FC+ +L L + + IH +Q R L +F+ G
Sbjct: 401 EPGSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDKSQPERDNVLNQFRS--------G 451
Query: 568 KPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
+ +L+A+DVAARGLD+ I+ V++Y P + Y+HR GRT R G + Q+S
Sbjct: 452 RTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDS 511
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 129 bits (324), Expect = 2e-29
Identities = 118/445 (26%), Positives = 207/445 (46%), Gaps = 68/445 (15%)
Query: 210 DDQEPPVLPE--WSE------NMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMG 261
D EP + E W+E +M+LS ++L+G+ GF +P+ IQ ++I +KG++++
Sbjct: 15 DGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIA 74
Query: 262 KASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNK 321
+A +G+GKT + I I++Q+ D ++ L+ PTRELA Q+ QKV +
Sbjct: 75 QAQSGTGKTATFAISILQQIELDLKATQA--LVLAPTRELAQQI----QKVVMALGDYMG 128
Query: 322 YTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEA 381
+ + GG +++ + + L+ + + IIV TPGR ++L R L P++ K+ VLDEA
Sbjct: 129 ASCHACIGGTNVRAEVQKLQME-APHIIVGTPGRVFDMLNRR-YLSPKYIKM--FVLDEA 184
Query: 382 DRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSW 441
D +L G D+ I + L S Q ++ SAT D+ K
Sbjct: 185 DEMLSRGFKDQIYDIFQKL---------------NSNTQVVLLSATMPSDVLEVTKKF-- 227
Query: 442 KILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLY 501
M + L+KK + + ++ + + + +E ++ L DLY
Sbjct: 228 ------------MRDPIRILVKK-----EELTLEGIRQFYINVEREEWKLDTL---CDLY 267
Query: 502 VYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSE 561
I ++F N V L ++ + +H M QK R + +F+
Sbjct: 268 ETLTITQ----AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS--- 320
Query: 562 KNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMI 621
G +LI +D+ ARG+D+ + V++Y LP + + YIHR GR R +GV++ +
Sbjct: 321 -----GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINM 375
Query: 622 CSPQESMGPLRKLRKVLSTKKSSNP 646
+ +E LR + +T P
Sbjct: 376 VT-EEDKRTLRDIETFYNTSIEEMP 399
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 129 bits (324), Expect = 2e-29
Identities = 119/482 (24%), Positives = 208/482 (42%), Gaps = 102/482 (21%)
Query: 210 DDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGK 269
++Q+ P+ E + L +++ L+ G +PT IQ +IP L+G +++ +A TGSGK
Sbjct: 37 EEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGK 96
Query: 270 TLAYGIPIIEQLIKDTSNDRS----IGLIFTPTRELAHQVTDHLQKVWTKMNKL-----N 320
TLAY +P++++L S + I P+REL Q+V+T+++ L
Sbjct: 97 TLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELC-------QQVYTEVSSLIELCRV 149
Query: 321 KYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLER---NPDLIPRFAKIDTLV 377
+ + LT +S L G I+V+TP + P + + LV
Sbjct: 150 QLKAVQLTSSMSASDMRNALA--GLPEILVSTPACIPKCFAAGVLEPTAVSE--SLSILV 205
Query: 378 LDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLD 437
LDEAD LL G+ D + ++ + Q ++ SAT S D+
Sbjct: 206 LDEADLLLSYGYEDNLRSVTSIIPRR---------------CQCLLMSATTSSDV----- 245
Query: 438 KTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVII----DTNPEHKVTSQVKESLIEC 493
++++++ H P+++ D + E V S V++ I C
Sbjct: 246 --------------EKLKKLILH---------NPIVLTLTEDNDKEEAVPSNVQQFWISC 282
Query: 494 LPMERDLYVYYFIMM--YPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLR 551
++ L++ + + L+F N ID +L FL I S ++ + Q +RL
Sbjct: 283 SAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLH 342
Query: 552 NLEKF----------------------------KEQSEKNSKVGKPTILIASDVAARGLD 583
LE+F ++++KN+K KP L A RG+D
Sbjct: 343 ILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPK-LDAEFGVVRGID 401
Query: 584 ISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKS 643
+ V+++ +P+S YIHR GRT R + G SV + SP E G ++ L++ K+
Sbjct: 402 FKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEG-FEDIKSFLASDKN 460
Query: 644 SN 645
+
Sbjct: 461 KD 462
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 129 bits (323), Expect = 2e-29
Identities = 121/450 (26%), Positives = 203/450 (44%), Gaps = 67/450 (14%)
Query: 234 LSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI--KDTSNDRSI 291
L F TEIQ + IP ALKG +I+G A TGSGKTLA+ +P+IE L K TS D
Sbjct: 54 LKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLG 113
Query: 292 GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSI-QKQERILKYDGSGRIIV 350
L+ +PTRELA Q + L K+ +L+ ++ + GG + +++ER+ + + I+V
Sbjct: 114 ALVISPTRELAIQTFETL----VKIGRLHSFSAGLIIGGNNYKEEKERLSRMN----ILV 165
Query: 351 ATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSI 410
TPGR L+ +++ + + + L+LDEADR+L G + I+ L R
Sbjct: 166 CTPGRLLQHIDQAVNF--DTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHR------ 217
Query: 411 DGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSK 470
QTM+FSAT S K L +N +
Sbjct: 218 ---------QTMLFSAT---------QTKSVKDLARLSLQNPDF---------------- 243
Query: 471 PVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY-PGTTLVFCNAIDSVKKLNAF 529
+ + N S + + + E+ ++ FI + T+VF ++ V+ +
Sbjct: 244 -ISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKTIVFLSSCKQVRFVYET 302
Query: 530 LNNLK--ISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGI 587
++ IS +H Q R KF + +L +D+ ARGLD +
Sbjct: 303 FRRMRPGISLLHLHGKQKQTTRTEVTAKFTS--------SRHVVLFCTDIVARGLDFPAV 354
Query: 588 KHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSS--N 645
V+ P D YIHR GRTAR + G ++++ P E R K ++ ++ + +
Sbjct: 355 DWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLESKKIAVERINVKD 414
Query: 646 PRKTKWQNDVPMLPLEPDIVSQLRERSKIA 675
+KT +N + L + + + + +++ I+
Sbjct: 415 GKKTSIRNQLQNLCFKDNDIKYIGQKAFIS 444
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 129 bits (323), Expect = 2e-29
Identities = 114/469 (24%), Positives = 205/469 (43%), Gaps = 72/469 (15%)
Query: 194 NDDLL--QSNVFSSNVDIDDQEPP----------VLPEWSENMDLSFTVLKGLSGLGFTR 241
NDDLL + + +++QE P + + L +L+ + GF
Sbjct: 4 NDDLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEH 63
Query: 242 PTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTREL 301
P+E+Q + IP A+ G +I+ +A +G GKT + + ++QL + + N+ L+ TREL
Sbjct: 64 PSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-EPSDNNTCHVLVMCHTREL 122
Query: 302 AHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLE 361
A Q++ ++ M + + GG++IQK E LK G+ I+V TPGR L L+
Sbjct: 123 AFQISKEYERFSKYMPTVK---VAVFFGGMAIQKDEETLK-SGTPHIVVGTPGRILALI- 177
Query: 362 RNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQT 421
RN L + K VLDE D++L+ L R ++ P G Q
Sbjct: 178 RNKKLNLKLLK--HFVLDECDKMLEQ------------LDMRRDVQEIFRSTPHGK--QV 221
Query: 422 MIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHK 481
M+FSAT S D+ K F P+ + + E K
Sbjct: 222 MMFSATLSKDIRPVCKK----------------------------FMQDPMEVYVDDEAK 253
Query: 482 VTSQ-VKESLIECLPMERDLYVYYFI-MMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQ 539
+T +++ + E++ ++ + ++ ++F ++ L+ L +
Sbjct: 254 LTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIG 313
Query: 540 IHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSA 599
IH M Q+ RL ++FK+ ++ IL+A+++ RG+DI + V +Y +P +
Sbjct: 314 IHRGMTQEERLNRYQQFKDFQKR--------ILVATNLFGRGMDIERVNIVFNYDMPEDS 365
Query: 600 DVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRK 648
D Y+HR R R +G+++ S + L +++ S P +
Sbjct: 366 DTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELPEE 414
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 128 bits (321), Expect = 4e-29
Identities = 114/425 (26%), Positives = 202/425 (46%), Gaps = 48/425 (11%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + +WS+ + T++ L F T IQ +++P + G +++G + TGSGKT++Y
Sbjct: 251 PKPVTKWSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISY 310
Query: 274 GIPIIEQLIKDTSNDRS----IGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTG 329
+P++ Q+ + +GLI PTRELA Q+ + + K + + TG
Sbjct: 311 LLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRS---VCCTG 367
Query: 330 GLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGH 389
G ++KQ LK I+VATPGRF+++L N + +I +V+DEADRL G
Sbjct: 368 GSEMKKQITDLKR--GTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGF 425
Query: 390 FDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGG 449
+ +I+K + + Q ++FSATF KL + ++L +
Sbjct: 426 EPQITQIMKTVRPDK---------------QCVLFSATFP----NKLRSFAVRVLHSPIS 466
Query: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQV-----KESLIECLPMERDLYVYY 504
+ ++N +K+ +F+ I + + K + V + + + E D
Sbjct: 467 ITINSKGMVNENVKQ-KFR-----ICHSEDEKFDNLVQLIHERSEFFDEVQSEND-GQSS 519
Query: 505 FIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNS 564
+ ++F ++ + ++ L N I + IH+ + RL NLEKFK EKNS
Sbjct: 520 DVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKR--EKNS 577
Query: 565 KVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP 624
IL+ ++V +RGL++ + V+ Y+ ++ Y+H +GRTARG G ++ +
Sbjct: 578 ------ILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLH 631
Query: 625 QESMG 629
E G
Sbjct: 632 DELSG 636
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 128 bits (321), Expect = 4e-29
Identities = 113/425 (26%), Positives = 200/425 (46%), Gaps = 60/425 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M+L ++L+G+ GF +P+ IQ ++I +KG++++ +A +G+GKT + I I++QL
Sbjct: 36 DDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+ + L+ PTRELA Q+ QKV + T + GG +++ + + L+
Sbjct: 96 --EIEFKETQALVLAPTRELAQQI----QKVILALGDYMGATCHACIGGTNVRNEMQKLQ 149
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ + I+V TPGR ++L R L P++ K+ VLDEAD +L G D+ +I
Sbjct: 150 AE-APHIVVGTPGRVFDMLNRR-YLSPKWIKM--FVLDEADEMLSRGFKDQIYEIF---- 201
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
+K+ TSI Q + SAT D+ K M + L
Sbjct: 202 --QKLNTSI---------QVVFASATMPTDVLEVTKKF--------------MRDPIRIL 236
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAID 521
+KK + + ++ + + + +E ++ L DLY I ++F N
Sbjct: 237 VKK-----EELTLEGIKQFYINVEREEWKLDTL---CDLYETLTITQ----AVIFLNTRR 284
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
V L ++ + +H M QK R + +F+ G +LI +D+ ARG
Sbjct: 285 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRS--------GSSRVLITTDLLARG 336
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
+D+ + V++Y LP + + YIHR GR R +GV++ + +E LR + +T
Sbjct: 337 IDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVT-EEDKRILRDIETFYNTT 395
Query: 642 KSSNP 646
P
Sbjct: 396 VEEMP 400
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 128 bits (321), Expect = 4e-29
Identities = 121/412 (29%), Positives = 184/412 (44%), Gaps = 69/412 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L +L+ L GF PT IQ ++ P+AL+ +I+ A TGSGKTL Y IP L
Sbjct: 438 ESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF-IL 496
Query: 282 IKDTSNDRSIG---LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQER 338
++ ND G LI PTRELA Q+ D + + ++ + L GG K +
Sbjct: 497 LRHCRNDSRNGPTVLILAPTRELATQIQDEA----LRFGRSSRISCTCLYGG--APKGPQ 550
Query: 339 ILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILK 398
+ + + I+VATPGR ++LE + F ++ LVLDEADR+L G + KI+
Sbjct: 551 LKELERGADIVVATPGRLNDILEMK---MIDFQQVSLLVLDEADRMLDMGFEPQIRKIVN 607
Query: 399 LLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVL 458
+ R QT++++AT+ E+ ++
Sbjct: 608 EIPPRR---------------QTLMYTATWP----------------------KEVRKIA 630
Query: 459 NHLM-KKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFC 517
+ L+ +Q V D +K +Q E ++ + ER L ++FC
Sbjct: 631 SDLLVNPVQVNIGRV--DELAANKAITQYVE-VVPQMEKERRLEQILRSQERGSKVIIFC 687
Query: 518 NAIDSVKKLNAFLN---NLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
S K+L L + IH Q R L +F+ GK +LIA
Sbjct: 688 ----STKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRS--------GKSCVLIA 735
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
+DVAARGLDI I+ V++Y P + Y+HR GRT R GV+ + Q+
Sbjct: 736 TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQD 787
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 128 bits (321), Expect = 4e-29
Identities = 113/395 (28%), Positives = 181/395 (45%), Gaps = 70/395 (17%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTS--- 286
++K + +T+PT IQ +++P AL G +I+G A TGSGKT A+ P++ ++
Sbjct: 280 LIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKP 339
Query: 287 NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSG 346
D IGLI PTREL+ Q+ + + K K+ ++ GG S +Q + L +
Sbjct: 340 GDGPIGLILAPTRELSLQIYNEAK----KFGKVYNLNVVCCYGGGSKWEQSKAL--EQGA 393
Query: 347 RIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKI 406
IIVATPGR +++++ + R + LVLDEADR+ G + I + R
Sbjct: 394 EIIVATPGRMIDMVKMKATNLRR---VTFLVLDEADRMFHMGFEPQVRSICNHVRPDR-- 448
Query: 407 KTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQ 466
Q ++FSATF + ++ G+ NE Q +
Sbjct: 449 -------------QCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDI-------- 487
Query: 467 FKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKL 526
++ V + NP K L + + G+ L+F KK+
Sbjct: 488 --TQSVYVFPNPLQKWNW---------------LLCHLVKFLSEGSVLIFV-----TKKV 525
Query: 527 NA--FLNNLKISSFQ---IHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
+A NNL I + +H M Q +R + + +FK + + IL+A+DVAARG
Sbjct: 526 DAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRK--------ECDILVATDVAARG 577
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG 616
LDI I++V++Y R + + HR GRT R +G
Sbjct: 578 LDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKG 612
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 127 bits (320), Expect = 5e-29
Identities = 112/432 (25%), Positives = 197/432 (44%), Gaps = 63/432 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+++++ + ++ GF + T +Q +IPL LK +++ +A TGSGKTLAY +P +++
Sbjct: 4 QSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKV 63
Query: 282 IKDTSNDRSIG-LIFTPTRELAHQVTDHLQKVWT----KMNKLNKYTILSLTGGLSIQKQ 336
+ +++ +G LI PTRELA Q+ + +++ ++ K GG
Sbjct: 64 TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTN 123
Query: 337 ERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKI 396
+ + + +++ TPGR E+L ++ L+LDEAD L+ G + I
Sbjct: 124 DLASFREKNPSVVIGTPGRLNEMLSHISS-----KHLEILILDEADTLIDMGFQRTLQSI 178
Query: 397 LKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQ 456
+ L K R+ T +FSAT ++ T LK AG
Sbjct: 179 ISQLPKQRR---------------TGLFSAT--------MNDTVSSFLKIAG-------- 207
Query: 457 VLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESL--IECLPMERDLYVYYFIMMYPGTTL 514
+ N + + SK + T + S V + ++C+ ++ + +
Sbjct: 208 LRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCM-------IHLLCTIEYEKAI 260
Query: 515 VFCNAIDSVKKLNAFLNNLKISSFQI---HSSMAQKNRLRNLEKFKEQSEKNSKVGKPTI 571
VF ++ SV+ N+ K+ F+I H Q NR RN EKFK+ ++K T+
Sbjct: 261 VFFSSCASVEYFNSLFLTYKLP-FEIVALHGQQVQSNRSRNFEKFKKSNKK-------TV 312
Query: 572 LIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSP--QESMG 629
L +D+A+RGLDI + VL P + HR GR R GV++++ + +E
Sbjct: 313 LFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYE 372
Query: 630 PLRKLRKVLSTK 641
L ++RKV T+
Sbjct: 373 ELLRVRKVPITR 384
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 127 bits (320), Expect = 5e-29
Identities = 123/435 (28%), Positives = 195/435 (44%), Gaps = 75/435 (17%)
Query: 234 LSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIG- 292
L + RPT IQ S + G++++ A TGSGKTLA+ IP + +L+++ DR +
Sbjct: 751 LKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTD 810
Query: 293 -------LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS---LTGGLSIQKQERILKY 342
LI PTREL +Q +T +L T L GG S + L+
Sbjct: 811 EKPSPRLLIVAPTRELVNQ-------TFTTARQLTYETGLKCGLAFGGYSRNANVQHLRS 863
Query: 343 DGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHF-DEFEKILKLLG 401
I+VAT GR + + +K+ +VLDEADR++ F +E KI+
Sbjct: 864 FSQLNILVATMGRLQDFVNAGE---VSLSKMKYIVLDEADRMVDSNDFGEEVSKII---- 916
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDL----FTKLDKTSWKILKT--AGGENNEME 455
G P QT++FSA+FS DL K K + +L+ G N +++
Sbjct: 917 ----------GSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKID 966
Query: 456 QVLNHL--MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTT 513
Q + + +K K + ID N +L+ P+E+ T
Sbjct: 967 QKILPVPRTEKRDAIYKLLGIDEN---------TVTLLPDAPIEKQ------------KT 1005
Query: 514 LVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILI 573
L+F N++ L A +++ +S+ +HS Q+ R R L+ F+ GK ++
Sbjct: 1006 LIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRR--------GKYQCMV 1057
Query: 574 ASDVAARGLDISGIKHVLHYHLP--RSADVYIHRSGRTARGDNEGVSVMICSPQESMGPL 631
AS+V ARGL+I+G+ HV++Y +P D Y++R GRT R G S + +
Sbjct: 1058 ASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFVDVENDTDII 1117
Query: 632 RKLRKVLSTKKSSNP 646
L +L+ K P
Sbjct: 1118 PCLVSILNEAKKEVP 1132
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 126 bits (317), Expect = 1e-28
Identities = 120/410 (29%), Positives = 196/410 (47%), Gaps = 66/410 (16%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK 283
+ +S +GL + T++Q +IP AL G +I+G A TGSGKTLA+ IPI+E+L +
Sbjct: 76 LPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHR 135
Query: 284 DT-SNDRSIG-LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+ S + +G +I +PTRELA Q L KV K +K + ++ G+ ++K ER+ +
Sbjct: 136 ERWSPEDGVGCIIISPTRELAAQTFGVLNKV-GKFHKFSAGLLIGGREGVDVEK-ERVHE 193
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ I+V PGR L+ ++ P+ ++ L+LDEADR+L + + I+ L
Sbjct: 194 MN----ILVCAPGRLLQHMDETPNF--ECPQLQILILDEADRVLDSAFKGQLDPIISQLP 247
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
K R QT++FSAT + K+ A + E + H
Sbjct: 248 KHR---------------QTLLFSAT-----------QTKKVKDLARLSLRDPEYISVH- 280
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDL-YVYYFIMMYPGT-TLVFCNA 519
+ P TS ++ +I +P+E+ L ++ FI + + LVF +
Sbjct: 281 ---------AEAVTATP----TSLMQTVMI--VPVEKKLDMLWSFIKTHLNSRILVFLST 325
Query: 520 IDSVKKLNAFLNNLK--ISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDV 577
VK ++ N L+ I +H M+Q+ R+ +F E + ++L +DV
Sbjct: 326 KKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIE---------RQSVLFCTDV 376
Query: 578 AARGLDI-SGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
ARGLD + V+ P YIHR GRTAR +G S++ +P E
Sbjct: 377 LARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSE 426
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 126 bits (316), Expect = 1e-28
Identities = 116/432 (26%), Positives = 193/432 (43%), Gaps = 67/432 (15%)
Query: 205 SNVDIDDQEPPVLPEWS-ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKA 263
SN +I+ + P E + N +S +K L G G T IQ K+ G +++ +A
Sbjct: 103 SNSEIEQEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQA 162
Query: 264 STGSGKTLAYGIPIIEQLIKDTSNDRSIG-----LIFTPTRELAHQVTDHLQKVWTKMNK 318
TG+GKT ++ IP+IE+L + DR G L+ PTRELA+QV+ + K+
Sbjct: 163 RTGTGKTFSFAIPLIEKLHGEL-QDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKL-- 219
Query: 319 LNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNP-DLIPRFAKIDTLV 377
++ GG Q ++ I+V TPGR + ++ DL K+ +V
Sbjct: 220 ----SVACFYGGTPYGGQFERMR--NGIDILVGTPGRIKDHIQNGKLDL----TKLKHVV 269
Query: 378 LDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSAT---FSLDLFT 434
LDE D++L G D+ E+IL + K K + QT++FSAT + ++
Sbjct: 270 LDEVDQMLDMGFADQVEEILSVAYK----------KDSEDNPQTLLFSATCPHWVFNVAK 319
Query: 435 KLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECL 494
K K++++ + G + + + HL K + + +I
Sbjct: 320 KYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGD------------------ 361
Query: 495 PMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLE 554
V + G T++FC ++L+ + +K + +H + QK R L+
Sbjct: 362 -------VIRVYSGHQGRTIIFCETKKEAQELSQ-NSAIKQDAQSLHGDIPQKQREITLK 413
Query: 555 KFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDN 614
F+ G +L+A++VAARGLDI + V+ P+ + YIHRSGRT R
Sbjct: 414 GFRN--------GSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGR 465
Query: 615 EGVSVMICSPQE 626
GV + +E
Sbjct: 466 TGVCICFYQHKE 477
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 126 bits (316), Expect = 1e-28
Identities = 112/401 (27%), Positives = 184/401 (44%), Gaps = 78/401 (19%)
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTS---NDRSIGLIF 295
+T+PT IQ + +P+AL G +++G A TGSGKT A+ P++ ++ D I +I
Sbjct: 154 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 213
Query: 296 TPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGR 355
PTREL Q+ + + K +++ GG S+ +Q + L+ I+V TPGR
Sbjct: 214 CPTRELCQQIHAECK----RFGKAYNLRSVAVYGGGSMWEQAKALQ--EGAEIVVCTPGR 267
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
++ +++ + R + LV DEADR+ G + I + R
Sbjct: 268 LIDHVKKKATNLQR---VSYLVFDEADRMFDMGFEYQVRSIASHVRPDR----------- 313
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKIL----KTAGGENNEMEQVLNHLMKKIQFKSKP 471
QT++FSATF K++K + IL + G+ E + + +++
Sbjct: 314 ----QTLLFSATFR----KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVE-------- 357
Query: 472 VIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNA--F 529
I+ + P + + L+E G+ L+F KK NA
Sbjct: 358 -ILHSGPSK--WNWLTRRLVE--------------FTSSGSVLLFV-----TKKANAEEL 395
Query: 530 LNNLKISSFQ---IHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISG 586
NNLK +H M Q R + + FK++ +L+A+DVAARGLDI
Sbjct: 396 ANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD--------IPVLVATDVAARGLDIPS 447
Query: 587 IKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
IK V++Y + R D + HR GRT R +GV+ + +P++S
Sbjct: 448 IKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDS 488
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 126 bits (316), Expect = 1e-28
Identities = 115/417 (27%), Positives = 188/417 (44%), Gaps = 79/417 (18%)
Query: 217 LPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIP 276
L E + + LS V+ L L PTEIQ IP ++ +++ + TGSGKTLAY +P
Sbjct: 110 LVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP 169
Query: 277 IIE-----------QLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTIL 325
I++ L K T R ++ PTREL+ QV H ++ +
Sbjct: 170 IVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVCLHQDYHHA------RFRSI 223
Query: 326 SLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLL 385
++GG I+ QE L + + ++V TPGR L+ +E + + I LVLDEAD +
Sbjct: 224 LVSGGSRIRPQEDSL--NNAIDMVVGTPGRILQHIEEGNMV---YGDIAYLVLDEADTMF 278
Query: 386 QDGHFDEFEKILKLLGKARKIKTSIDG-----KPTGSGWQTMIFSATFSLDLFTKLDKTS 440
G E K L L + K+ I K +Q + T + L K+
Sbjct: 279 DRGFGPEIRKFLAPLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTST--LHKKIANAR 336
Query: 441 WKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDL 500
+K +GGE +++E +L L + SK
Sbjct: 337 HDFIKLSGGE-DKLEALLQVLEPSLAKGSK------------------------------ 365
Query: 501 YVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQS 560
+VFCN ++S + ++ +L+ +IS+ H + + R+ NL+KFK++
Sbjct: 366 ------------VMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEE 413
Query: 561 EKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGV 617
G L+ +D+AARGLD+ + HV+ + P+++ Y+HR+GRTAR +G+
Sbjct: 414 ------GDCPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGAKGL 463
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 125 bits (315), Expect = 2e-28
Identities = 117/451 (25%), Positives = 202/451 (43%), Gaps = 68/451 (15%)
Query: 196 DLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALK 255
D L+ +V +N D + + ++M+L +L+G+ GF RP+ IQ ++I L
Sbjct: 3 DQLEDSVIETNYD-------EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILG 55
Query: 256 GHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTK 315
+++ +A +G+GKT + I +++++ DTS + LI PTRELA Q+ QKV
Sbjct: 56 ERDVLAQAQSGTGKTATFSISVLQKI--DTSLKQCQALILAPTRELAQQI----QKVVVA 109
Query: 316 MNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDT 375
+ L + GG ++ L+ ++V TPGR ++++R +P A +
Sbjct: 110 LGDLMNVECHACIGGTLVRDDMAALQ--AGVHVVVGTPGRVHDMIQRR--ALPTDA-VQM 164
Query: 376 LVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTK 435
VLDEAD +L G D+ I +LL PT Q ++ SAT D+
Sbjct: 165 FVLDEADEMLSRGFKDQIYDIFQLL------------PPTA---QVVLLSATMPQDVLEV 209
Query: 436 LDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLP 495
K M + L+KK + + ++ + V + +E ++ L
Sbjct: 210 TTKF--------------MRDPIRILVKKDE-----LTLEGIKQFYVAVEKEEWKLDTL- 249
Query: 496 MERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEK 555
DLY + ++FCN V L L + +H M Q R + +
Sbjct: 250 --CDLYETVTVTQ----AVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHE 303
Query: 556 FKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNE 615
F + G ILI +D+ ARG+D+ + V++Y LP + + YIHR GR R +
Sbjct: 304 F--------RTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRK 355
Query: 616 GVSVMICSPQESMGPLRKLRKVLSTKKSSNP 646
GVS+ + + + +R++ + +T P
Sbjct: 356 GVSINFVT-NDDVRMMREIEQFYNTHIEEMP 385
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 125 bits (315), Expect = 2e-28
Identities = 113/466 (24%), Positives = 200/466 (42%), Gaps = 72/466 (15%)
Query: 186 TVVTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEI 245
T+ T LL+ + +E V P + + M L +L+G+ GF +P+ I
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTF-DTMGLREDLLRGIYAYGFEKPSAI 64
Query: 246 QLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQV 305
Q ++I +KG +++ ++ +G+GKT + I +++ L D + LI PTRELA Q+
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL--DIQVRETQALILAPTRELAVQI 122
Query: 306 TDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPD 365
L + MN + GG ++ E I K D ++ TPGR +++ R
Sbjct: 123 QKGLLALGDYMN----VQCHACIGGTNV--GEDIRKLDYGQHVVAGTPGRVFDMIRRRS- 175
Query: 366 LIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFS 425
R I LVLDEAD +L G ++ + + L A Q ++ S
Sbjct: 176 --LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT---------------QVVLIS 218
Query: 426 ATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQ 485
AT ++ +K F + P+ I +
Sbjct: 219 ATLPHEILEMTNK----------------------------FMTDPIRILVKRDELTLEG 250
Query: 486 VKESLIECLPMERDLYVYYFIM-MYPGTTL----VFCNAIDSVKKLNAFLNNLKISSFQI 540
+K+ + +ER+ + + + +Y T+ +FCN V L + + +
Sbjct: 251 IKQFFV---AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM 307
Query: 541 HSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSAD 600
H M QK R +++F+ G +LI++DV ARGLD+ + +++Y LP + +
Sbjct: 308 HGDMPQKERESIMKEFRS--------GASRVLISTDVWARGLDVPQVSLIINYDLPNNRE 359
Query: 601 VYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNP 646
+YIHR GR+ R +GV++ + + LR + + ST+ P
Sbjct: 360 LYIHRIGRSGRYGRKGVAINFVK-NDDIRILRDIEQYYSTQIDEMP 404
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 125 bits (315), Expect = 2e-28
Identities = 127/440 (28%), Positives = 200/440 (44%), Gaps = 99/440 (22%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGK-------------- 269
++LS +L+ LG+ +PT IQ++ IP + ++ A TGSGK
Sbjct: 172 LNLSRPLLRACETLGYKKPTPIQVQFIPQEWR--DLCASAITGSGKVSTRLMVLCNTEIL 229
Query: 270 ------TLAYGIPIIEQLI-KDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKY 322
T A+ +P +E+L+ + + LI TPTRELA Q+ +Q L ++
Sbjct: 230 FRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQN-------LAQF 282
Query: 323 TILS---LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLD 379
T + + GGLS+++QE +L+ I+VATPGR ++ L + + + L+LD
Sbjct: 283 TDIKCGLIVGGLSVREQEVVLR--SMPDIVVATPGRMIDHLRNSMSV--DLDDLAVLILD 338
Query: 380 EADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKT 439
EADRLLQ G E ++++L K R QTM+FSAT
Sbjct: 339 EADRLLQTGFATEITELVRLCPKRR---------------QTMLFSAT------------ 371
Query: 440 SWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERD 499
M + + L+K +KP+ + +P + + E + R+
Sbjct: 372 --------------MTEEVKELVK--LSLNKPLRLSADPSARRPPGLTEEYL------RE 409
Query: 500 LYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQ 559
+V P A +K L L LK + + + AQ+ +RNL
Sbjct: 410 FFV-------PSCASGTKQAAHRLKILFG-LAGLKAAELHGNLTQAQRLDVRNLGTSALF 461
Query: 560 SEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSV 619
S + + + LIA+DVAARGLDI G++ V++Y PR D Y+HR GRTAR EG +V
Sbjct: 462 SLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAV 521
Query: 620 MICSPQESMGPLRKLRKVLS 639
+ + R L KV++
Sbjct: 522 TFVTDSD-----RSLLKVIT 536
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 125 bits (314), Expect = 3e-28
Identities = 111/435 (25%), Positives = 192/435 (43%), Gaps = 61/435 (14%)
Query: 206 NVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKAST 265
NV++ E E M+L +L+G+ G+ P+ +Q ++I KG +++ +A +
Sbjct: 8 NVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQS 67
Query: 266 GSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTIL 325
G+GKT + I I++ + D S + LI +PTRELA Q+ + + + MN
Sbjct: 68 GTGKTATFSIGILQSI--DLSVRDTQALILSPTRELAVQIQNVVLALGDHMN----VQCH 121
Query: 326 SLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLL 385
+ GG S+ I K D ++ TPGR +++ R R + L+LDEAD LL
Sbjct: 122 ACIGGTSVGND--IKKLDYGQHVVSGTPGRVTDMIRRRN---LRTRNVKMLILDEADELL 176
Query: 386 QDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILK 445
G ++ I + L P G+ Q ++ SAT D+
Sbjct: 177 NQGFKEQIYDIYRYL-------------PPGT--QVVVVSATLPQDVL------------ 209
Query: 446 TAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYF 505
EM +I K + ++ ++ + + +E + L DLY
Sbjct: 210 -------EMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTL---CDLYDTLT 259
Query: 506 IMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSK 565
I ++FCN+ V L + + +H M QK R ++ F++
Sbjct: 260 ITQ----AVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQ------- 308
Query: 566 VGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQ 625
G +LI +D+ ARG+D+ + V++Y LP + + YIHR GR+ R +GV++ +
Sbjct: 309 -GNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVT-N 366
Query: 626 ESMGPLRKLRKVLST 640
E + LR + + ST
Sbjct: 367 EDVRILRDIEQYYST 381
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 125 bits (314), Expect = 3e-28
Identities = 111/441 (25%), Positives = 196/441 (44%), Gaps = 43/441 (9%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + W ++ L +L+ + G+ PT IQ ++IP+ L+ +I+G A TGSGKT A+
Sbjct: 387 PNPIRSWKDS-SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAF 445
Query: 274 GIPIIEQLIK-------DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS 326
IP++ + + S+ +I PTRELA Q+ + K K ++
Sbjct: 446 LIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEET----IKFGKPLGIRTVA 501
Query: 327 LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ 386
+ GG+S + Q L+ I++ATPGR +++LE ++ R + VLDEADR++
Sbjct: 502 VIGGISREDQGFRLRM--GCEIVIATPGRLIDVLENRYLVLSRCTYV---VLDEADRMID 556
Query: 387 DGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKT 446
G + +KIL+ + S T A F + K ++ T
Sbjct: 557 MGFEPDVQKILE------HMPVSNQKPDTDEAEDPEKMLANFE----SGKHKYRQTVMFT 606
Query: 447 AGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFI 506
A M + L + + +P ++ K +V++ + E+ + +
Sbjct: 607 A-----TMPPAVERLAR--SYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL 659
Query: 507 MM-YPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSK 565
+ ++F N L L + ++ +H Q+ R E + N K
Sbjct: 660 EQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR--------EFALSNLK 711
Query: 566 VGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQ 625
G IL+A+DVA RG+DI + V++Y + ++ + YIHR GRT R GV++ + +
Sbjct: 712 AGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKE 771
Query: 626 ESMGPLRKLRKVLSTKKSSNP 646
+S + +L + SS P
Sbjct: 772 DSAVFYELKQAILESPVSSCP 792
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 125 bits (314), Expect = 3e-28
Identities = 111/441 (25%), Positives = 196/441 (44%), Gaps = 43/441 (9%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + W ++ L +L+ + G+ PT IQ ++IP+ L+ +I+G A TGSGKT A+
Sbjct: 387 PNPIRSWKDS-SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAF 445
Query: 274 GIPIIEQLIK-------DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS 326
IP++ + + S+ +I PTRELA Q+ + K K ++
Sbjct: 446 LIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEET----IKFGKPLGIRTVA 501
Query: 327 LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ 386
+ GG+S + Q L+ I++ATPGR +++LE ++ R + VLDEADR++
Sbjct: 502 VIGGISREDQGFRLRM--GCEIVIATPGRLIDVLENRYLVLSRCTYV---VLDEADRMID 556
Query: 387 DGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKT 446
G + +KIL+ + S T A F + K ++ T
Sbjct: 557 MGFEPDVQKILE------HMPVSNQKPDTDEAEDPEKMLANFE----SGKHKYRQTVMFT 606
Query: 447 AGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFI 506
A M + L + + +P ++ K +V++ + E+ + +
Sbjct: 607 A-----TMPPAVERLAR--SYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL 659
Query: 507 MM-YPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSK 565
+ ++F N L L + ++ +H Q+ R E + N K
Sbjct: 660 EQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR--------EFALSNLK 711
Query: 566 VGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQ 625
G IL+A+DVA RG+DI + V++Y + ++ + YIHR GRT R GV++ + +
Sbjct: 712 AGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKE 771
Query: 626 ESMGPLRKLRKVLSTKKSSNP 646
+S + +L + SS P
Sbjct: 772 DSAVFYELKQAILESPVSSCP 792
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 124 bits (312), Expect = 4e-28
Identities = 113/396 (28%), Positives = 184/396 (45%), Gaps = 70/396 (17%)
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD---TSNDRSIGLIF 295
+ +PT IQ +IP AL G +++G A TGSGKT AY P I ++ + + + +I
Sbjct: 285 YEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIV 344
Query: 296 TPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGR 355
PTRELA QV +K + K+ +N + GG S +Q L+ +G+ ++V TPGR
Sbjct: 345 VPTRELAIQVFQEAKK-FCKVYNINP---ICAYGGGSKWEQSNELQNEGA-EMVVCTPGR 399
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
++L++ F + LV DEADR+ G + + I + R
Sbjct: 400 IIDLVKMG---ATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDR----------- 445
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID 475
Q ++FSATF + ++ GE E + + V +
Sbjct: 446 ----QCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADI----------EQKVFVM 491
Query: 476 TNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNA--FLNNL 533
N + K+ ++ +L+E + G L+F KKL++ L
Sbjct: 492 QNQDVKLHWLIR-NLVEFASL--------------GKVLIFV-----TKKLDSEDVAKKL 531
Query: 534 KISSFQI---HSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHV 590
K+ F I H M Q R NL KF+++S+ IL+A+DVAARGLDIS I+ V
Sbjct: 532 KMKDFDIVLLHGDMLQAERNENLLKFRKKSQ---------ILVATDVAARGLDISEIRTV 582
Query: 591 LHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
+++ + R D ++HR GRT R ++G + + + ++
Sbjct: 583 INFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKD 618
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 124 bits (312), Expect = 4e-28
Identities = 102/432 (23%), Positives = 197/432 (44%), Gaps = 81/432 (18%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK 283
++L +LK ++ LG+ +PT IQ +IPL L+G +++ +A TGSGKT Y +P+I++++
Sbjct: 14 LELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILN 73
Query: 284 ---DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERIL 340
+ S ++ PT++L Q ++++ K+ + ++ + ++ ++ +
Sbjct: 74 SKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALS 133
Query: 341 KYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
+ S I+VATP L E + ++TLV+DEAD + G+ +F++++K L
Sbjct: 134 E---SPDIVVATPANLLAYAEAGS--VVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHL 188
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNH 460
+Q ++ SAT + D+ K L ++E+
Sbjct: 189 PPI---------------YQAVLVSATLTDDV------VRMKGLCLNNPVTLKLEE--PE 225
Query: 461 LMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAI 520
L+ + Q + ++ + N + + LY + + G +++F N+I
Sbjct: 226 LVPQDQLSHQRILAEENDKPAI-----------------LYALLKLRLIRGKSIIFVNSI 268
Query: 521 DSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASD---- 576
D K+ FL I + ++S + R+ + +F + G I+IASD
Sbjct: 269 DRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNK--------GTYDIIIASDEHHM 320
Query: 577 ---------------------VAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNE 615
A+RG+D + +V+++ PR YIHR+GRTARG+N+
Sbjct: 321 EKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNK 380
Query: 616 GVSVMICSPQES 627
G + S +ES
Sbjct: 381 GSVLSFVSMKES 392
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 124 bits (311), Expect = 6e-28
Identities = 102/389 (26%), Positives = 176/389 (45%), Gaps = 58/389 (14%)
Query: 241 RPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSND-----RSIGLIF 295
+PT +Q +IP L+G +++ A TGSGKTL+Y +P++++L+ S D GL+
Sbjct: 150 QPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVL 209
Query: 296 TPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGR 355
P+RELA QV Q + + L + L GG +++ L S ++VATPG
Sbjct: 210 VPSRELAQQVRAVAQPLGRSLGLL----VRDLEGGHGMRRIRLQLSRQPSADVLVATPGA 265
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSID-GKP 414
+ L+ + ++ LVLDEAD LL + + + IL+ K+ + D P
Sbjct: 266 LWKALKSR---LISLEQLSFLVLDEADTLLDESFLELVDYILE---KSHIAEGPADLEDP 319
Query: 415 TGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVII 474
Q ++ ATF + + L+ K+ I
Sbjct: 320 FNPKAQLVLVGATF--------------------------PEGVGQLLNKVASPDAVTTI 353
Query: 475 DTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY--------PGTTLVFCNAIDSVKKL 526
++ H + VK++ + ++ + + + GT LVFCN+ +V L
Sbjct: 354 TSSKLHCIMPHVKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWL 413
Query: 527 NAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISG 586
L++ KI ++ M R+ + F++ S IL+ +D+A+RGLD +G
Sbjct: 414 GYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSR--------DILLCTDIASRGLDSTG 465
Query: 587 IKHVLHYHLPRSADVYIHRSGRTARGDNE 615
++ V++Y P + YIHR+GR R +E
Sbjct: 466 VELVVNYDFPPTLQDYIHRAGRVGRVGSE 494
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 124 bits (311), Expect = 6e-28
Identities = 115/421 (27%), Positives = 195/421 (46%), Gaps = 62/421 (14%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIP-IIEQLIKDTSND 288
+L+ ++ +GF++P+ IQ ++ P+ L+GH+++G A TG+GKTLA+ +P +I + T
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRG 353
Query: 289 RSIG---LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGS 345
G L+ PTRELA Q+ ++K + K + GG + +I +
Sbjct: 354 TRGGANVLVLAPTRELALQIEMEVKKYSFRGMK----AVCVYGGG---NRNMQISDLERG 406
Query: 346 GRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARK 405
II+ TPGR +L+ N + + I LVLDEADR+L G + K++
Sbjct: 407 AEIIICTPGRLNDLIMAN---VIDVSTITYLVLDEADRMLDMGFEPQIRKVM-------- 455
Query: 406 IKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKI 465
+D +P QT++ SAT+ + ++ G ++ H +K+I
Sbjct: 456 ----LDIRPDR---QTIMTSATWPPGVRRLAQSYMKNPIQVCVG---SLDLAATHSVKQI 505
Query: 466 QFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKK 525
K + D + + +TS VK M ++FC
Sbjct: 506 ---IKLMEDDMDKFNTITSFVKN------------------MSSTDKIIIFCGRKVRADD 544
Query: 526 LNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDIS 585
L++ L + IH + Q +R EQ+ + K G IL+A+DVA+RGLDI
Sbjct: 545 LSSELTLDGFMTQCIHGNRDQMDR--------EQAIADIKSGVVRILVATDVASRGLDIE 596
Query: 586 GIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSN 645
I HV++Y P + + Y+HR GRT R +G S+ + +E ++L ++L +
Sbjct: 597 DITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFT-REDWAMAKELIEILQEAEQEV 655
Query: 646 P 646
P
Sbjct: 656 P 656
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 124 bits (311), Expect = 6e-28
Identities = 116/421 (27%), Positives = 194/421 (45%), Gaps = 51/421 (12%)
Query: 226 LSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI--K 283
LS K L+ F PT++Q SI AL+G +++G A TGSGKTLA+ IP++E L K
Sbjct: 79 LSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNK 138
Query: 284 DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYD 343
+ D +I +PTRELA+Q+ + L+KV K + ++ + GG +++ + +
Sbjct: 139 WSRTDGVGAIIISPTRELAYQIFETLKKV----GKHHDFSAGLIIGGKNLKFERTRM--- 191
Query: 344 GSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKA 403
I++ TPGR L+ ++ NP + + ++ LVLDEADR L G I++
Sbjct: 192 DQCNILICTPGRLLQHMDENP--LFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPV 249
Query: 404 RKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWK--ILKTAGGENNEMEQVLNHL 461
R QT++FSAT + L + + K + GG E +
Sbjct: 250 R---------------QTLLFSAT-QTNTVQDLARLNLKDPVYVGYGGATPREEPSAS-- 291
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY-PGTTLVFCNAI 520
K+ + PE S V +L + + M ++ FI + +VF +
Sbjct: 292 ----TKKTPNTAVLAVPELLQQSYVVLNLEDKITM-----LWSFIKNHLKQKIIVFVASC 342
Query: 521 DSVKKLNAFLNNLKISS--FQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
K L L+ S ++ ++ Q R+ E F +S ++ ++DVA
Sbjct: 343 KQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSH--------VVMFSTDVA 394
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVL 638
+RGLD + V+ P YIHR+GR+AR G +++ +P E + L++ L
Sbjct: 395 SRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQL 454
Query: 639 S 639
+
Sbjct: 455 N 455
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 124 bits (310), Expect = 7e-28
Identities = 109/428 (25%), Positives = 200/428 (46%), Gaps = 64/428 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+M+L +L+G+ GF P+ IQ ++I + G +++ +A +G+GKT + I +++ +
Sbjct: 26 ESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI 85
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
D LI +PTRELA Q+ ++ + MN +N + I TGG +++ + ++
Sbjct: 86 --DLRKKDLQALILSPTRELASQIGQVVKNLGDYMN-VNAFAI---TGGKTLKDDLKKMQ 139
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
G + + TPGR L+++++ + + + LVLDEAD LL + LG
Sbjct: 140 KHGC-QAVSGTPGRVLDMIKKQ---MLQTRNVQMLVLDEADELLSE-----------TLG 184
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
++I D+F KL K + +++ + N ++ +V
Sbjct: 185 FKQQI-----------------------YDIFAKLPK-NCQVVVVSATMNKDILEVTRKF 220
Query: 462 MK---KIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCN 518
M KI K + ++ ++ V +E + L D+Y I ++FCN
Sbjct: 221 MNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTL---CDIYDSLTITQ----CVIFCN 273
Query: 519 AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
V L+ L + +H M Q+ R + + F + G +LI++DV
Sbjct: 274 TKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF--------RTGHSRVLISTDVW 325
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVL 638
ARG+D+ + V++Y LP + YIHR GR+ R +GV++ + + + LR++ K
Sbjct: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFIT-KADLAKLREIEKFY 384
Query: 639 STKKSSNP 646
S K + P
Sbjct: 385 SIKINPMP 392
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 122 bits (306), Expect = 2e-27
Identities = 120/472 (25%), Positives = 219/472 (45%), Gaps = 94/472 (19%)
Query: 188 VTEDQTNDDLLQSNVFSSNVDI-----DDQEPPVLPEWS----ENMDLSFTVLKGLSGLG 238
V E +T + SN+ SS ++ D Q P P +S + + L+ +LKG+ +
Sbjct: 54 VEEKKTKQE--DSNLISSEYEVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIYAMK 111
Query: 239 FTRPTEIQLKSIPLALKG--HNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFT 296
F +P++IQ +++PL L N++ ++ +G+GKT A+ + ++ ++ + ++ ++I L
Sbjct: 112 FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL--A 169
Query: 297 PTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRF 356
P+RELA Q + +Q +M K K T + S +K ++I + ++IV TPG
Sbjct: 170 PSRELARQTLEVVQ----EMGKFTKITSQLIVPD-SFEKNKQI-----NAQVIVGTPGTV 219
Query: 357 LELLERNPDLIPRFAKIDTLVLDEADRLL-QDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
L+L+ R + + KI VLDEAD +L Q G D+ ++ + L K
Sbjct: 220 LDLMRRK---LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK------------- 263
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID 475
Q ++FSATF+ + KKI + + +
Sbjct: 264 --DTQLVLFSATFA--------------------------DAVRQYAKKIVPNANTLELQ 295
Query: 476 TNPEHKVTSQVKESLIECL--PMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNL 533
TN + +K+ ++C + D+ + +M G++++F + + K N L
Sbjct: 296 TNEVN--VDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIF---VATKKTANVLYGKL 350
Query: 534 KISSFQI---HSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHV 590
K ++ H + + R R ++ F+E G+ +LI ++V ARG+DI + V
Sbjct: 351 KSEGHEVSILHGDLQTQERDRLIDDFRE--------GRSKVLITTNVLARGIDIPTVSMV 402
Query: 591 LHYHLPRSAD------VYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRK 636
++Y LP A+ YIHR GRT R +GV++ + S L ++K
Sbjct: 403 VNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK 454
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 122 bits (305), Expect = 3e-27
Identities = 112/436 (25%), Positives = 194/436 (43%), Gaps = 67/436 (15%)
Query: 206 NVDIDDQEPPVLPEWSENMD---LSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGK 262
NV + QEP ++ D +S LK LS G + T +Q ++ L G + + K
Sbjct: 312 NVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVK 371
Query: 263 ASTGSGKTLAYGIPIIEQLIKDTSNDRSI-------GLIFTPTRELAHQVTDHLQKVWTK 315
A TG+GK++A+ +P IE ++K ++ + + LI PTRELA Q+ K K
Sbjct: 372 AKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAE-GKALLK 430
Query: 316 MNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDT 375
+ + + +L GG + ++ L+ + +I++ATPGR L+ +E L R +
Sbjct: 431 FH--DGIGVQTLIGGTRFKLDQQRLESEPC-QILIATPGRLLDHIENKSGLTSRLMALKL 487
Query: 376 LVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTK 435
++DEAD LL G + EKI+ L + R Q+++FSAT
Sbjct: 488 FIVDEADLLLDLGFRRDVEKIIDCLPRQR---------------QSLLFSATIP------ 526
Query: 436 LDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLP 495
E+ +V ++K+ + + H +V++S I
Sbjct: 527 ----------------KEVRRVSQLVLKRDHSYIDTIGLGCVETH---DKVRQSCIVAPH 567
Query: 496 MERDLYVYYFIMMYPGTT-----LVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRL 550
V + + + T +VFC+ + L +K++ +IH+ Q +R
Sbjct: 568 ESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRT 627
Query: 551 RNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTA 610
R ++FKE + IL+ SDV+ARG++ + V+ +P + YIHR GRT
Sbjct: 628 RVSDEFKESNR--------LILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTG 679
Query: 611 RGDNEGVSVMICSPQE 626
R G +++ +P E
Sbjct: 680 REGKGGEGLLLIAPWE 695
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 122 bits (305), Expect = 3e-27
Identities = 126/420 (30%), Positives = 190/420 (45%), Gaps = 61/420 (14%)
Query: 219 EWS--ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIP 276
+WS + LS VL+ + GF + T +Q +IPL L ++ +A TGSGKTLA+ +P
Sbjct: 5 KWSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVP 64
Query: 277 IIEQL---IKDTS-NDRSIG-LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGL 331
++E L K+T + IG L+ +PTRELA Q+++ L + + + L + GG
Sbjct: 65 MLEILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQ-FLEHEDLEHLNQQLIVGGN 123
Query: 332 SIQKQERILKYDGSGRIIVATPGRFLELLERNPD---LIPRFAKIDTLVLDEADRLLQDG 388
SI++ L+ + + I+V TPGR +L +R D L + ++ LVLDEADRLL G
Sbjct: 124 SIEEDIATLRRE-TPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLG 182
Query: 389 HFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAG 448
IL L + R+ T +FSAT T L AG
Sbjct: 183 FKTSVNNILGYLPRQRR---------------TGLFSAT---------QTTEVTDLIRAG 218
Query: 449 GENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMM 508
N + V + + PE K +L+E L +
Sbjct: 219 LRNPVLVSVKEKASVNTPARLQNFYRIVEPELKFV-----ALLEFLSSPATVI------- 266
Query: 509 YPGTTLVFCNAIDSVKKLNAFLNNL--KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKV 566
G +VF V+ L L K + IH M K R +EKF+ +
Sbjct: 267 --GKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMKNK-RANVVEKFRNTPQ----- 318
Query: 567 GKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQE 626
+L+ +DV ARGLD+ I+ V+ + P +A ++HR GRTAR NEG +++ P E
Sbjct: 319 ---AVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFLLPSE 375
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 121 bits (304), Expect = 4e-27
Identities = 104/392 (26%), Positives = 178/392 (44%), Gaps = 61/392 (15%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
+L+ + GF P+E+Q + IP A+ G +++ +A +G GKT + + ++Q+ + S +
Sbjct: 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI--EPSPGQ 114
Query: 290 SIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRII 349
L+ TRELA+Q+ + + T + + GG++I+ + +LK + I+
Sbjct: 115 VSALVLCHTRELAYQICNEFVRFSTYLPDTK---VSVFYGGVNIKIHKDLLKNE-CPHIV 170
Query: 350 VATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTS 409
V TPGR L L R DL + +LDE D++L+ L R ++
Sbjct: 171 VGTPGRVLALA-REKDL--SLKNVRHFILDECDKMLES------------LDMRRDVQEI 215
Query: 410 IDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKS 469
K T Q M+FSAT S ++ K F
Sbjct: 216 F--KMTPHDKQVMMFSATLSKEIRPVCKK----------------------------FMQ 245
Query: 470 KPVIIDTNPEHKVTSQ-VKESLIECLPMERDLYVYYFIMMYP-GTTLVFCNAIDSVKKLN 527
P+ I + E K+T + + I+ ME++ + + ++F ++ +LN
Sbjct: 246 DPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELN 305
Query: 528 AFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGI 587
L S IHS M+Q+ RL + FKE G IL+A+D+ RG+DI +
Sbjct: 306 KLLVECNFPSICIHSGMSQEERLTRYKSFKE--------GHKRILVATDLVGRGIDIERV 357
Query: 588 KHVLHYHLPRSADVYIHRSGRTARGDNEGVSV 619
V++Y +P SAD Y+HR GR R +G+++
Sbjct: 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 389
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 121 bits (304), Expect = 4e-27
Identities = 123/501 (24%), Positives = 217/501 (42%), Gaps = 89/501 (17%)
Query: 206 NVDIDDQEPPVLPEWSENMD---LSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGK 262
NV + QEP ++ D +S LK LS G + T +Q ++ L G + + K
Sbjct: 359 NVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVK 418
Query: 263 ASTGSGKTLAYGIPIIEQLIKDTSNDRSIG-------LIFTPTRELAHQVTDHLQKVWTK 315
A TG+GK++A+ +P IE ++K ++ + + LI PTRELA Q+ + +
Sbjct: 419 AKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKN 478
Query: 316 MNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDT 375
+ + T++ GG + ++ L+ + +I++ATPGR L+ +E L R +
Sbjct: 479 HDGIGVQTLI---GGTRFRLDQQRLESEPC-QILIATPGRLLDHIENKSGLTSRLMALKL 534
Query: 376 LVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTK 435
++DEAD LL G + EKI+ L + R Q+++FSAT
Sbjct: 535 FIVDEADLLLDLGFKRDVEKIIDCLPRQR---------------QSLLFSATIP------ 573
Query: 436 LDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLP 495
E+ +V ++K+ + + H +VK+S I P
Sbjct: 574 ----------------KEVRRVSQLVLKRDHSYIDTIGLGCVETH---DKVKQSCI-VAP 613
Query: 496 MERDLYVYYFIM------MYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNR 549
E ++ ++ M +VFC+ + L +K++ +IH+ Q +R
Sbjct: 614 HESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHR 673
Query: 550 LRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRT 609
++FKE + IL+ SDV+ARG++ + V+ +P + YIHR GRT
Sbjct: 674 TCVSDEFKESNR--------LILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRT 725
Query: 610 ARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDVPMLPL-EPDIVSQL 668
R G +++ +P E R L K D+P+ P+ PD+ S++
Sbjct: 726 GREGKGGKGLLLIAPWE--------RYFLDELK-----------DLPLEPIPAPDLDSRV 766
Query: 669 RERSKIASELADDEIATKSLH 689
+ + + D I + H
Sbjct: 767 KHQVDQSMAKIDTSIKEAAYH 787
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 120 bits (302), Expect = 6e-27
Identities = 104/392 (26%), Positives = 177/392 (44%), Gaps = 61/392 (15%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
+L+ + GF P+E+Q + IP A+ G +++ +A +G GKT + + ++Q+ + S +
Sbjct: 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI--EPSPGQ 114
Query: 290 SIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRII 349
L+ TRELA+Q+ + + T + + GG++I+ + +LK + I+
Sbjct: 115 VSALVLCHTRELAYQICNEFVRFSTYLPDTK---VSVFYGGVNIKIHKDLLKNE-CPHIV 170
Query: 350 VATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTS 409
V TPGR L L R DL + +LDE D++L+ L R ++
Sbjct: 171 VGTPGRVLALA-REKDL--SLKNVRHFILDECDKMLES------------LDMRRDVQEI 215
Query: 410 IDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKS 469
K T Q M+FSAT S ++ K F
Sbjct: 216 F--KMTPHDKQVMMFSATLSKEIRPVCKK----------------------------FMQ 245
Query: 470 KPVIIDTNPEHKVTSQ-VKESLIECLPMERDLYVYYFIMMYP-GTTLVFCNAIDSVKKLN 527
P+ I + E K+T + + I+ ME+ + + ++F ++ +LN
Sbjct: 246 DPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVVIFVKSVSRAAELN 305
Query: 528 AFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGI 587
L S IHS M+Q+ RL + FKE G IL+A+D+ RG+DI +
Sbjct: 306 KLLVECNFPSICIHSGMSQEERLTRYKSFKE--------GHKRILVATDLVGRGIDIERV 357
Query: 588 KHVLHYHLPRSADVYIHRSGRTARGDNEGVSV 619
V++Y +P SAD Y+HR GR R +G+++
Sbjct: 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 389
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 120 bits (301), Expect = 8e-27
Identities = 110/395 (27%), Positives = 178/395 (44%), Gaps = 65/395 (16%)
Query: 238 GFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIG---LI 294
GF+ P+ IQ +S P+A++ +I+ A TGSGKTL Y IP L + ND +G L+
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL-QRIHNDSRMGPTILV 306
Query: 295 FTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPG 354
+PTRELA Q+ Q K K +K + L GG K ++ + + I+VATPG
Sbjct: 307 LSPTRELATQI----QVEALKFGKSSKISCACLYGG--APKGPQLKEIERGVDIVVATPG 360
Query: 355 RFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKP 414
R ++LE + ++ LVLDEADR+L G + KI+ + R
Sbjct: 361 RLNDILEMKRISL---HQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKR---------- 407
Query: 415 TGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVII 474
QT++++AT+ E+ ++ L+ V I
Sbjct: 408 -----QTLMYTATWP----------------------KEVRKIAADLL----VNPAQVNI 436
Query: 475 DTNPEHKVTSQVKESLIECLPMERDLYVYYFI-MMYPGT-TLVFCNAIDSVKKLNAFLNN 532
E + +++ PME+ + + PG+ ++FC+ +L L
Sbjct: 437 GNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTR 496
Query: 533 LKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLH 592
+ IH +Q R L +F+ G+ +L+A+DVAARGLD+ I+ V++
Sbjct: 497 -TFGAAAIHGDKSQAERDDVLNQFRS--------GRTPVLVATDVAARGLDVKDIRVVVN 547
Query: 593 YHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
Y P + Y+HR GRT R G++ Q++
Sbjct: 548 YDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDA 582
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 120 bits (301), Expect = 8e-27
Identities = 106/427 (24%), Positives = 184/427 (42%), Gaps = 65/427 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M ++ VL+G+ G+ +P+EIQ +++ LKG +++ +A +G+GKT I + +
Sbjct: 25 DDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ-- 82
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
I + S+ + L+ +P+RELA Q +Q + N + GG SI E I K
Sbjct: 83 IVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTN----IQAHACIGGKSI--GEDIKK 136
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ + TPGR ++++R L + K+ LVLDE+D +L G D+ + + L
Sbjct: 137 LERGVHAVSGTPGRVYDMIKRG-SLQTKAVKL--LVLDESDEMLSKGLKDQIYDVYRAL- 192
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
Q + SAT ++ +K
Sbjct: 193 --------------PHDIQVCLISATLPQEILEMTEK----------------------- 215
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPME--RDLYVYYFIMMYPGTTLVFCNA 519
F + PV I P+ +K+ ++ E D + + ++FCN
Sbjct: 216 -----FMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNT 270
Query: 520 IDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAA 579
V L + + +H QK R + +F+ K +LIASDV A
Sbjct: 271 RQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRS--------FKSRVLIASDVWA 322
Query: 580 RGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLS 639
RG+D+ + HV++Y +P + ++YIHR GR R EGV++ + M L+ + +
Sbjct: 323 RGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSD-MKDLKDIERHYG 381
Query: 640 TKKSSNP 646
TK P
Sbjct: 382 TKIREMP 388
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 120 bits (300), Expect = 1e-26
Identities = 114/489 (23%), Positives = 211/489 (42%), Gaps = 116/489 (23%)
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRS----IGLI 294
F +PT +Q ++IPLAL+G +++ +A TGSGKT AY IPI+E L+K D + L+
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALL 93
Query: 295 FTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPG 354
PTRELA QV + L+K+ +K ++ ++ ++Q+ + D I++ATP
Sbjct: 94 LVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPD----IVIATPS 149
Query: 355 RFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKP 414
R ++ ++P K+ LV+DEAD +L G+ ++ + + + L +
Sbjct: 150 RC--VVHVASGVLP-LDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPR------------ 194
Query: 415 TGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVII 474
G Q+ + SAT S ++ + ++K+ ++ P I+
Sbjct: 195 ---GTQSFLMSATLSKNIAS---------------------------LQKLVCRN-PFIL 223
Query: 475 DTNPEHKVTSQVKESLIECLPMERDL--YVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNN 532
+ + + ++ + +++C ++ L Y+ + + G L+F N I+ +L FL
Sbjct: 224 AVK-DKEASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQ 282
Query: 533 LKISSFQIHSSMAQKNRLRNLEKF------------------------------------ 556
+ S ++S + +RL LE++
Sbjct: 283 FGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVDFVEEEVIS 342
Query: 557 -------KEQSEKNSKVGKPTILIASD---------------VAARGLDISGIKHVLHYH 594
K + ++N+ V +IL A+ ARGLD + VL++
Sbjct: 343 TDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFD 402
Query: 595 LPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQND 654
+P + YIHR GRTAR G ++ P+ +G K + S KK + + +
Sbjct: 403 MPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVGK-HKPTSLESCKKDESVLRRLEKKQ 461
Query: 655 VPMLPLEPD 663
+ + P D
Sbjct: 462 ISLQPYSFD 470
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 119 bits (298), Expect = 2e-26
Identities = 131/488 (26%), Positives = 224/488 (45%), Gaps = 81/488 (16%)
Query: 186 TVVTEDQTNDD---LLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLK-GL------- 234
+V T D+ ++ + S++F +N DI + PV+ + E + S + GL
Sbjct: 185 SVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLIST 244
Query: 235 --SGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL----IKDTSND 288
+ L + T +Q +SIP+ L+G + + ++ TGSGKTLAY IP+++ L K +D
Sbjct: 245 INTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSD 304
Query: 289 RSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRI 348
L+ PTRELA Q D +Q K+ K + + + G +K E+ G I
Sbjct: 305 GPYALVLVPTRELALQSFDTVQ----KLLKPFTWIVPGVLMGGEKRKSEKARLRKGI-NI 359
Query: 349 IVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKT 408
+++TPGR ++ ++ ++ F+++ LV DEADR+L G FEK + ++ A +
Sbjct: 360 LISTPGRLVDHIKSTKNI--HFSRLRWLVFDEADRILDLG----FEKDITVILNAVNAEC 413
Query: 409 SIDGKPTGSGWQTMIFSATFSLDLFTKL------DKTSWKILKTAGGENNEMEQVLNHLM 462
Q ++ SAT + + T+L D S +L ++ LN
Sbjct: 414 --------QKRQNVLLSATLT-EGVTRLADISLHDPVSISVL-------DKSHDQLNPKD 457
Query: 463 KKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMM-----YPGTTLVFC 517
K +Q P D + +K+ + R + + FI+ +VF
Sbjct: 458 KAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFF 517
Query: 518 NAIDSVK-KLNAFLNNLKISS-----------------FQIHSSMAQKNRLRNLEKFKEQ 559
++ + V+ + FL L SS ++H M Q+ R ++F
Sbjct: 518 SSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEF--- 574
Query: 560 SEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSV 619
+S+ G +L+ +DVAARGLD+ + ++ Y+ P S YIHR GRTAR G S+
Sbjct: 575 --SHSRRG---VLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSL 629
Query: 620 MICSPQES 627
+I +P E+
Sbjct: 630 LILAPSEA 637
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 119 bits (298), Expect = 2e-26
Identities = 129/469 (27%), Positives = 204/469 (42%), Gaps = 85/469 (18%)
Query: 225 DLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD 284
DL +L G ++ PT IQ IP + G N++ +A TG GKT+ + IPIIE +
Sbjct: 103 DLCSPLLIKALGKEYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPIIE---RH 159
Query: 285 TSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDG 344
+ I +PTREL Q+ K+ ++ ++S+ G K++ + Y G
Sbjct: 160 RQMKKPQACIISPTRELCEQIRVEASKLVAG----SRIRVVSIYG-----KKQDLPSYSG 210
Query: 345 SGRIIVATPGRFLELLERNP-DLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKA 403
I+VATPGR ++LL R DL ++I VLDEAD+LL G +I + K
Sbjct: 211 VD-IVVATPGRLIDLLHRKKVDL----SEIRMFVLDEADKLLDMGFEIPIREIHGFVPK- 264
Query: 404 RKIKTSIDGKPTGSGWQTMIFSATFS------LDLFTKLDKTSWKILKTAGGENNEMEQV 457
QT +FSAT+S ++ F DK S +I E +
Sbjct: 265 --------------NTQTCLFSATYSPKLTRMINYFLPEDKVSIEI---------SSETL 301
Query: 458 LNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLP-MERDLYVYYFIMMYPGTTLVF 516
N + ++ ++K K+ L+ L + +L + + + P LVF
Sbjct: 302 KNIRQEIVEVRNK----------------KKMLLNILKGPDINLKGSWRMEVQPDKVLVF 345
Query: 517 CNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASD 576
++ L I +H Q +R L+ F+ G+ +++A+
Sbjct: 346 VERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRN--------GRFPVMVATS 397
Query: 577 VAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRK 636
VAARG+DI +K V++Y +P+ YIHR GRT R G S+ + + L +
Sbjct: 398 VAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSGKSISFYDGGMTADLKKALVE 457
Query: 637 VLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLR-ERSKIAS--ELADDE 682
VL K++ P P L D R ER K+ + E++DDE
Sbjct: 458 VLRESKNAVP---------PFLTGASDEDFNARFERLKVTADKEMSDDE 497
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 119 bits (297), Expect = 2e-26
Identities = 124/485 (25%), Positives = 219/485 (44%), Gaps = 84/485 (17%)
Query: 180 VKGEAGTVVTEDQTNDD---------LLQSNVFSSNVDIDD-QEPPVLPEWS----ENMD 225
VK A T+++ +D L++SN+ + ++ Q P P +S E +
Sbjct: 39 VKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELR 98
Query: 226 LSFTVLKGLSGLGFTRPTEIQLKSIPLALKG--HNIMGKASTGSGKTLAYGIPIIEQLIK 283
L +L+G+ +GF RP++IQ ++PL L N++ ++ +G+GKT A+ + ++ Q+
Sbjct: 99 LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV-- 156
Query: 284 DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYD 343
+ +N L +PT ELA Q KV +M K Y L L + K ER K
Sbjct: 157 EPANKYPQCLCLSPTYELALQTG----KVIEQMGKF--YPELKLAYAVRGNKLERGQKI- 209
Query: 344 GSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ-DGHFDEFEKILKLLGK 402
S +I++ TPG L+ + + P+ KI VLDEAD ++ GH D+ +I ++L +
Sbjct: 210 -SEQIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 266
Query: 403 ARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLM 462
Q ++FSATF + + WK + + N
Sbjct: 267 ---------------NCQMLLFSATF--------EDSVWKFAQKVVPDPNV--------- 294
Query: 463 KKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDS 522
I+ K + +DT ++ V ++ + L +LY I ++FC+ +
Sbjct: 295 --IKLKREEETLDTIKQYYVLCSSRDEKFQALC---NLYGAITIAQ----AMIFCHTRKT 345
Query: 523 VKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGL 582
L A L+ + M + R +E+F+E GK +L+ ++V ARG+
Sbjct: 346 ASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--------GKEKVLVTTNVCARGI 397
Query: 583 DISGIKHVLHYHLPRSAD------VYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRK 636
D+ + V+++ LP D Y+HR GRT R G++V + + SM L ++++
Sbjct: 398 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 457
Query: 637 VLSTK 641
+ K
Sbjct: 458 HFNKK 462
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 119 bits (297), Expect = 2e-26
Identities = 105/400 (26%), Positives = 188/400 (46%), Gaps = 63/400 (15%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
++K L F RP IQ + + G + + +GSGKTLAY +P+I++L ++
Sbjct: 385 MMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGH 444
Query: 290 SIG-------LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKY 342
S ++ PT ELA QV + + + + + +TGG +++ ++
Sbjct: 445 SKSSPGCPRVIVLVPTAELASQVLANCRSI---SKSGVPFRSMVVTGGF--RQRTQLENL 499
Query: 343 DGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGK 402
+ +++ATPGRF L+ I + + +LDE D L D DEFE L+ L
Sbjct: 500 EQGVDVLIATPGRFTYLMNEG---ILGLSNLRCAILDEVDILFGD---DEFEAALQNL-- 551
Query: 403 ARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGE----NNEMEQVL 458
I+ P + Q + +AT L+++ KL + G +N +E+ L
Sbjct: 552 -------INSSPVTA--QYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFL 602
Query: 459 NHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCN 518
+ P +T ++K T+ ++ ++E P+ + T++FCN
Sbjct: 603 VDCSGDDNAEKTP---ETAFQNKKTALLQ--IMEENPVSK--------------TIIFCN 643
Query: 519 AIDSVKKLNAFLNNLKISSFQIH-----SSMAQKNRLRNLEKF-KEQSEKNSKVGKPTIL 572
I++ +K+ + Q+H ++++Q++RL N+++F Q E+NS L
Sbjct: 644 KIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENS-----LFL 698
Query: 573 IASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARG 612
+ +D A+RG+D SG+ HV+ + PR Y+ R GRTARG
Sbjct: 699 VCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARG 738
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 118 bits (295), Expect = 4e-26
Identities = 104/423 (24%), Positives = 190/423 (44%), Gaps = 65/423 (15%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
+L+ + GF P+E+Q + IP A+ G +++ +A +G GKT + I ++QL + +
Sbjct: 52 ILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQL-EPVDGEV 110
Query: 290 SIGLIFTPTRELAHQVTDHLQKVWTKMNK-LNKYTILSLTGGLSIQKQERILKYDGSGRI 348
S+ + TRELA Q++ K + + +K L + GG++I+K E L D I
Sbjct: 111 SV-VCMCHTRELAFQIS----KEYERFSKYLPGVKVAVFFGGMAIKKDEERLAND-CPHI 164
Query: 349 IVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHF-DEFEKILKLLGKARKIK 407
+V TPGR L L R+ L + K+ VLDE D+++ D + ++I+K+ + +
Sbjct: 165 VVGTPGRML-ALARSGKL--KLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQK--- 218
Query: 408 TSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQF 467
Q M+FSAT +L T + F
Sbjct: 219 ------------QVMMFSATLPKELRTVCKR----------------------------F 238
Query: 468 KSKPVIIDTNPEHKVTSQ-VKESLIECLPMERDLYVYYFI-MMYPGTTLVFCNAIDSVKK 525
P+ + + E K+T +++ ++ E++ + + + ++F A+ +
Sbjct: 239 MQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEA 298
Query: 526 LNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDIS 585
L+ L S IH MAQ+ RL + FK+ ++ IL+A+D+ RG+DI
Sbjct: 299 LHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKR--------ILVATDLFGRGMDIE 350
Query: 586 GIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSN 645
+ V +Y +P +D Y+HR R R +G+++ S + L ++ +
Sbjct: 351 RVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISITEL 410
Query: 646 PRK 648
P K
Sbjct: 411 PEK 413
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 117 bits (293), Expect = 7e-26
Identities = 120/451 (26%), Positives = 200/451 (43%), Gaps = 97/451 (21%)
Query: 219 EWSENMDLSFTVLK----GLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYG 274
EW +L F++L GL +GF T +Q +IP+ +++ + TGSGKT A+
Sbjct: 6 EWD---NLGFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFV 62
Query: 275 IPIIEQLIKDTSNDRSI------GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLT 328
IP++E+++K+ +N LI PTREL+ Q+ + V + + +
Sbjct: 63 IPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQI----ESVVLSFLEHYPSDLFPIK 118
Query: 329 GGLSIQKQERILKYDGSG------RIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEAD 382
L + E ++ D S +I++ TPGR L+ L+ + + +V+DEAD
Sbjct: 119 CQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMP---AVKTSACSMVVMDEAD 175
Query: 383 RLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWK 442
RLL + EKIL+LL K R+ T +FSAT
Sbjct: 176 RLLDMSFIKDTEKILRLLPKQRR---------------TGLFSAT--------------- 205
Query: 443 ILKTAGGENNEMEQVLNHLMKKIQFKS---KPVIIDTNPEHKVTSQVKESLIECLPMER- 498
+++AG + FK+ PV I N +++ S +K + P E+
Sbjct: 206 -MRSAGSD---------------IFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKL 249
Query: 499 -----DLYVYYF---IMMYPGTTLV--FCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKN 548
L Y F I+ +P V F + I + K N +N ++I F +H +
Sbjct: 250 QLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEI--FSLHGKLQTSA 307
Query: 549 RLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGR 608
R + L F + S NS +L +DVAARG+DI + V+ P + D+++HR GR
Sbjct: 308 RTKTLTAFTD-SLSNS------VLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGR 360
Query: 609 TARGDNEGVSVMICSP--QESMGPLRKLRKV 637
T R + G ++ + +E P +++ V
Sbjct: 361 TGRANRVGKAITFLNEGREEDFIPFMQVKNV 391
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 117 bits (293), Expect = 7e-26
Identities = 113/497 (22%), Positives = 212/497 (41%), Gaps = 95/497 (19%)
Query: 197 LLQSNVFSSNVDIDDQEPPVLPEWS---------------------ENMDLSFTVLKGLS 235
+ + +V + +D D++E P P+ S + L +L+ +
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIV 60
Query: 236 GLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIF 295
GF P+E+Q + IP A+ G +++ +A +G GKT + + ++Q+ + N + L+
Sbjct: 61 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI--EPVNGQVTVLVM 118
Query: 296 TPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGR 355
TRELA Q++ ++ M + + GGLSI+K E +LK ++V TPGR
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVK---VSVFFGGLSIKKDEEVLK-KNCPHVVVGTPGR 174
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
L L+ RN + VLDE D++L+ L R ++ + T
Sbjct: 175 ILALV-RNRSF--SLKNVKHFVLDECDKMLEQ------------LDMRRDVQEIF--RLT 217
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID 475
Q M+FSAT S D+ K F P+ +
Sbjct: 218 PHEKQCMMFSATLSKDIRPVCRK----------------------------FMQDPMEVF 249
Query: 476 TNPEHKVTSQ-VKESLIECLPMERDLYVYYFI-MMYPGTTLVFCNAIDSVKKLNAFLNNL 533
+ E K+T +++ ++ E++ ++ + ++ ++F ++ L L
Sbjct: 250 VDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQ 309
Query: 534 KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHY 593
+ IH MAQ+ RL ++FK+ + IL+A+++ RG+DI + V +Y
Sbjct: 310 NFPAIAIHRGMAQEERLSRYQQFKDFQRR--------ILVATNLFGRGMDIERVNIVFNY 361
Query: 594 HLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQN 653
+P +D Y+HR R R +G+++ S + + K N + +++
Sbjct: 362 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDE-------------NDAKILNDVQDRFEV 408
Query: 654 DVPMLPLEPDIVSQLRE 670
+V LP E DI + + +
Sbjct: 409 NVAELPEEIDISTYIEQ 425
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 117 bits (293), Expect = 7e-26
Identities = 104/406 (25%), Positives = 175/406 (42%), Gaps = 89/406 (21%)
Query: 226 LSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD- 284
L+ +L L L + +P IQ +++P+ + G + +G A TGSGKTL + +P++ IKD
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH-IKDQ 461
Query: 285 ---TSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+ D IGL+ PTREL Q+ ++ K +K + + GG + +Q LK
Sbjct: 462 PPVEAGDGPIGLVMAPTRELVQQIYSDIR----KFSKALGIICVPVYGGSGVAQQISELK 517
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
I+V TPGR +++L + I ++ LV+DEADR+ G + +I++ +
Sbjct: 518 --RGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 575
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
R QT++FSATF + T K K ++ G + + + + L
Sbjct: 576 PDR---------------QTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQL 620
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAID 521
++ PE + S++ E L E G LVF +
Sbjct: 621 ------------VEIRPESERFSRLLELLGE--------------WYEKGKVLVFVRS-- 652
Query: 522 SVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARG 581
+E+S + K +LIA+ VAARG
Sbjct: 653 -----------------------------------QEKSISDFKSDVCNLLIATSVAARG 677
Query: 582 LDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES 627
LD+ ++ V+++ P + Y+HR GRT R +G +V S ++
Sbjct: 678 LDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDA 723
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 117 bits (292), Expect = 9e-26
Identities = 99/389 (25%), Positives = 179/389 (45%), Gaps = 59/389 (15%)
Query: 243 TEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIG-LIFTPTREL 301
T++Q+ S L +++ ++ TGSGKTLA+ +P++ + IG LI +P+REL
Sbjct: 33 TDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSREL 92
Query: 302 AHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLE 361
Q+ +Q K+N T+ ++TGG + K ++ K + + I+VATPGR ++++
Sbjct: 93 CSQIVSVIQPFAEKLN----LTVETVTGGQKVDKNIKMFK-NKNVNILVATPGRLFQIIQ 147
Query: 362 RNPDLIPRFAK-IDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQ 420
LI R + + LV+DEADR + D +IL + K R+
Sbjct: 148 HEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRR--------------- 192
Query: 421 TMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEH 480
T +FSAT + E + ++ ++ +K V +
Sbjct: 193 TGLFSAT----------------------QVKEEDDLMVFGLR----NAKQVKVAQERNS 226
Query: 481 KVTSQVKESLIECLPMERDLYVYYFIMMYPG-TTLVFCNAIDSVKKLNAFLNNL--KISS 537
S +K +EC E+ FI L+F + +SV+ K
Sbjct: 227 AAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKRPL 286
Query: 538 FQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPR 597
F +H + +R ++ F + + ++I++DV ARG+DIS I V+ + LP+
Sbjct: 287 FAVHGKCSNPHRASQIKAFSDSTN--------GVMISTDVMARGIDISDIDWVIQFDLPK 338
Query: 598 SADVYIHRSGRTARGDNEGVSVMICSPQE 626
+ ++HR+GRTAR EG ++++ + ++
Sbjct: 339 HSSWFVHRAGRTARCGREGNALILIASEQ 367
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 117 bits (292), Expect = 9e-26
Identities = 105/429 (24%), Positives = 191/429 (44%), Gaps = 71/429 (16%)
Query: 223 NMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI 282
+M + VL+G+ GF +P+ IQ +++ L+G +++ +A +G+GKT + + + +
Sbjct: 39 DMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ--V 96
Query: 283 KDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKY 342
DTS+ LI +PTRELA Q +Q + N + GG S+ E I K
Sbjct: 97 VDTSSREVQALILSPTRELATQTEKTIQAIGLHAN----IQAHACIGGNSV--GEDIRKL 150
Query: 343 DGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGK 402
+ ++ TPGR ++++R R I L+LDE+D +L G D+ + + L
Sbjct: 151 EHGVHVVSGTPGRVCDMIKRRS---LRTRAIKLLILDESDEMLSRGFKDQIYDVYRYL-- 205
Query: 403 ARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLM 462
Q + SAT ++ L+ TS
Sbjct: 206 -------------PPDLQVCLVSATLPHEI---LEMTS---------------------- 227
Query: 463 KKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIM-MYPGTTL----VFC 517
+F ++PV I + +K+ + +E++ + + + +Y T+ +FC
Sbjct: 228 ---KFMTEPVKILVKRDELTLEGIKQFFV---AVEKEEWKFDTLCDLYDTLTITQAVIFC 281
Query: 518 NAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDV 577
N V L+ + + + +H M QK R + +F+ G +LI +DV
Sbjct: 282 NTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRS--------GDSRVLITTDV 333
Query: 578 AARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKV 637
ARG+D+ + V++Y LP + ++YIHR GR+ R +GV++ + + LR + +
Sbjct: 334 WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK-SDDIKILRDIEQY 392
Query: 638 LSTKKSSNP 646
ST+ P
Sbjct: 393 YSTQIDEMP 401
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 117 bits (292), Expect = 9e-26
Identities = 116/436 (26%), Positives = 198/436 (44%), Gaps = 73/436 (16%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
P + W+E+ ++ + +G+ PT IQ ++IP+ L+ +I+G A TGSGKTLA+
Sbjct: 390 PNPIRSWNES-GFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 448
Query: 274 GIPI---IEQLIK----DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS 326
IP+ I+ L K + + +I PTRELA Q+ + TK + +
Sbjct: 449 LIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEET----TKFGQPLGIRTVV 504
Query: 327 LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ 386
+ GGLS ++Q L+ I++ATPGR +++LE ++ + I VLDEADR++
Sbjct: 505 VVGGLSREEQGFRLRL--GCEIVIATPGRLIDVLENRYLVLNQCTYI---VLDEADRMID 559
Query: 387 DGHFDEFEKILKLL---------GKARKIKTSIDGKPTGSGW-QTMIFSATFSLDL---- 432
G + +KIL+ + +A ++ T + QT++F+AT +
Sbjct: 560 MGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLA 619
Query: 433 FTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIE 492
T L + + + + G EQ++ ++M + + ++ L+E
Sbjct: 620 RTYLRRPATVYIGSVGKPTERTEQIV-YMMGE-------------------NDKRKKLME 659
Query: 493 CLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRN 552
L + D V ++F N L L L +S +H Q+ R
Sbjct: 660 ILSRKIDPPV-----------IIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQR--- 705
Query: 553 LEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARG 612
E + K G IL+A+DVA RG+DI + V++Y + ++ + Y HR GRT R
Sbjct: 706 -----EYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 760
Query: 613 DNEGVS---VMICSPQ 625
G + V C P+
Sbjct: 761 GKTGCAISPVSTCPPE 776
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 116 bits (291), Expect = 1e-25
Identities = 129/483 (26%), Positives = 208/483 (42%), Gaps = 64/483 (13%)
Query: 237 LGFTRPTEIQLKSIPLALK--GHNIMGKASTGSGKTLAYGIPIIEQLIKDTSN--DRSIG 292
+ + PT IQ +P L + +A TGSGKTLAY +PI+++LI+ N R+ G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 293 L---IFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRII 349
+ I PTREL Q+ + K+ N L+ + + G +K E+ G I+
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKL--NNNPLSHWIVSCNVIGGEKKKSEKARIRKGVN-IL 273
Query: 350 VATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTS 409
+ TPGR + LE L +++ +VLDE DRL+ G + KIL L I
Sbjct: 274 IGTPGRLADHLENTEAL--DVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKK 331
Query: 410 IDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWK---------ILKTAGGENNEMEQVLNH 460
P+ TM+ SAT D +L ++ K + +T G + EQ+L
Sbjct: 332 DLSIPSRK--VTMLCSATMK-DTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQR 388
Query: 461 LM---KKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFC 517
+ K++ S ++ ++ V S K + D + F +
Sbjct: 389 YVVVPPKLRLVSLVALLRSH----VRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEA 444
Query: 518 ------NAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTI 571
+ D + A + K + +++H S++Q+ R L F + S I
Sbjct: 445 VKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSH-----I 499
Query: 572 LIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQES---- 627
L+ +DVAARGLD+ + V+ Y P S D Y+HR GRTAR + G ++M P+ES
Sbjct: 500 LLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYIN 559
Query: 628 --------------MGPLRKLRKVLSTKKSS----NPRKTKWQNDVPMLPLEPDIVSQLR 669
GP L S K++ R T+WQ ++ LE + + +
Sbjct: 560 LLKSSVSANILEQPNGPSGLLSAGFSQGKTNTNDWQDRATEWQLELERFILENEPMRNIA 619
Query: 670 ERS 672
+R+
Sbjct: 620 KRA 622
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 116 bits (290), Expect = 2e-25
Identities = 111/415 (26%), Positives = 178/415 (42%), Gaps = 69/415 (16%)
Query: 214 PPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAY 273
PP + + + + +++ + GF +P+ IQ + PL L G + +G + TGSGKTLA+
Sbjct: 79 PPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAF 138
Query: 274 GIP----IIEQLIKDTSNDRS-----IGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTI 324
+P I QL + ND L+ +PTRELA Q+ ++K N Y
Sbjct: 139 LLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKY-----SYNGYKS 193
Query: 325 LSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRL 384
+ L GG S + E++ G I++ATPGR +L + D + A + +VLDEADR+
Sbjct: 194 VCLYGGGS--RPEQVEACRGGVEIVIATPGRLTDL---SNDGVISLASVTYVVLDEADRM 248
Query: 385 LQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKIL 444
L G +IL + R + T + W + T D +TK
Sbjct: 249 LDMGFEVAIRRILFEIRPDRLVAL------TSATWPEGVRKLT---DKYTK--------- 290
Query: 445 KTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYY 504
E +N + KS + P +V E +
Sbjct: 291 --------EAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCE-------------IVN 329
Query: 505 FIMMYPGTT---LVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSE 561
F+ G ++F + L++ I+S +H +Q +R E S
Sbjct: 330 FLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDR--------EMSL 381
Query: 562 KNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG 616
+ G+ IL+A+D+A+RG+D+ I HVL+Y P + Y+HR GRT R +G
Sbjct: 382 NMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKG 436
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 115 bits (289), Expect = 2e-25
Identities = 132/523 (25%), Positives = 225/523 (42%), Gaps = 107/523 (20%)
Query: 211 DQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKT 270
D P ++ +S++ +S ++L LS +P+ IQ++SIP + N++ A TGSGKT
Sbjct: 119 DHLPNIILRFSDS-SMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKT 177
Query: 271 LAYGIPIIEQLIK--------DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKY 322
LA+ +P+I+++++ +++ + + ++ PTRELA Q + KY
Sbjct: 178 LAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQT----------YTEFLKY 227
Query: 323 TILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDT-----LV 377
+ + +E +++ I+V+TP R + L+ KIDT LV
Sbjct: 228 CANTSISAANFSGEETDIQH---ADILVSTPNRIVFHLD----------KIDTSSLRWLV 274
Query: 378 LDEADRLLQ--DGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTK 435
+DE+DRL + +G F L + KA D K T + FSATFS ++
Sbjct: 275 VDESDRLFEVVEGQDKCFRNQLAAIYKA------CDAKCT----RVAFFSATFSHEVEKW 324
Query: 436 LDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLP 495
+ +I GE N K K T K+ + +L+
Sbjct: 325 CKENIDEIGMVCVGERNS---------SNTSVKQKLTYCGTEDGKKIAIR---NLLR--- 369
Query: 496 MERDLYVYYFIMMYPGTTLVFC----NAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLR 551
+ LVF A+ VK L+A +NLK+ S I+S + K R
Sbjct: 370 -----------TSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDS--INSGKSDKERDE 416
Query: 552 NLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTAR 611
+E+F+ G+ +L+ +++ RGLD+S + V++Y LP S YIHR GRT R
Sbjct: 417 TMERFRR--------GEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGR 468
Query: 612 GDNEGVSVMICSPQESMGPLRKLRKV------------LSTKKSSNPRKTKWQNDVPMLP 659
G +V + + M ++ + V + KK S RK P
Sbjct: 469 AGKSGHAVTYFTDAD-MKYIKSIATVIRQSGFDVPEYLMEMKKVSRDRKKDMLKHAPKRH 527
Query: 660 LEPDIVSQLRERSKI-----ASELADDEIATKSLHKDDNWLKK 697
+ Q+ ++ K+ A E A ++ T++ K + +KK
Sbjct: 528 KIAIVKEQVIKKKKMLAKAAAEEKAKNKTETQTAEKPEKKIKK 570
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 115 bits (287), Expect = 3e-25
Identities = 109/424 (25%), Positives = 185/424 (42%), Gaps = 62/424 (14%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK 283
M+L +L+G+ GF +P+ IQ + I KG +++ +A +G+GKT + +++QL
Sbjct: 46 MELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-- 103
Query: 284 DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYD 343
D S + L+ PTRELA Q+ +KV + + GG S+++ +R+L+
Sbjct: 104 DISLVQCQALVLAPTRELAQQI----EKVMRALGDYLGVKAQACVGGTSVREDQRVLQ-- 157
Query: 344 GSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKA 403
++V TPGR +LL R R I VLDEAD +L G D+ I +LL
Sbjct: 158 SGVHVVVGTPGRVFDLLRRQS---LRADAIKMFVLDEADEMLSRGFKDQIYDIFQLL--- 211
Query: 404 RKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMK 463
S Q +FSAT E E+ + +
Sbjct: 212 ------------PSKVQVGVFSATMP-------------------PEALEITRKFMNKPV 240
Query: 464 KIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSV 523
+I K + ++ + V +E +E L DLY I +++F N V
Sbjct: 241 RILVKRDELTLEGIKQFYVNVDKEEWKLETL---CDLYETLAITQ----SVIFVNTRRKV 293
Query: 524 KKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLD 583
L + + + H M Q R + +F+ G +LI +D+ ARG+D
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--------GSSRVLITTDLLARGID 345
Query: 584 ISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSV--MICSPQESMGPLRKLRKVLSTK 641
+ + V+++ LP + Y+HR GR+ R +GV++ M + M +++ V+ +
Sbjct: 346 VQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEE 405
Query: 642 KSSN 645
SN
Sbjct: 406 LPSN 409
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 115 bits (287), Expect = 3e-25
Identities = 112/433 (25%), Positives = 184/433 (41%), Gaps = 80/433 (18%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK 283
M L +L+G+ GF +P+ IQ + I KG +++ +A +G+GKT + +++QL
Sbjct: 44 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-- 101
Query: 284 DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYD 343
D + + L+ PTRELA Q+ +KV + + + GG S+++ +RIL+
Sbjct: 102 DYALLQCQALVLAPTRELAQQI----EKVMRALGDYQGVKVHACVGGTSVREDQRILQ-- 155
Query: 344 GSGRIIVATPGRFLELLER---NPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLL 400
++V TPGR ++L R PD I F VLDEAD +L G D+ I +LL
Sbjct: 156 AGVHVVVGTPGRVFDMLRRQSLRPDCIKMF------VLDEADEMLSRGFKDQIYDIFQLL 209
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNH 460
KI Q +FSAT + K
Sbjct: 210 --PPKI-------------QVGVFSATMPPEALEITRK---------------------- 232
Query: 461 LMKKIQFKSKPVIIDTNPEHKVTSQVKESLIEC------LPMERDLYVYYFIMMYPGTTL 514
F SKPV I + +K+ + L DLY I ++
Sbjct: 233 ------FMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQ----SV 282
Query: 515 VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
+F N V L + + + H M Q R + +F+ G +LI
Sbjct: 283 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--------GSSRVLIT 334
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSV--MICSPQESMGPLR 632
+D+ ARG+D+ + V+++ LP + Y+HR GR+ R +GV++ + Q + ++
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQ 394
Query: 633 KLRKVLSTKKSSN 645
K V+ + SN
Sbjct: 395 KFYNVVVEELPSN 407
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 114 bits (286), Expect = 5e-25
Identities = 121/470 (25%), Positives = 212/470 (44%), Gaps = 79/470 (16%)
Query: 190 EDQTNDDLLQSNVFSSNVDIDDQ-----EPPVLPEWS----ENMDLSFTVLKGLSGLGFT 240
ED+ LL + S+ VD +Q P P +S E + L +L+G+ +GF
Sbjct: 53 EDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFN 112
Query: 241 RPTEIQLKSIPLALKG--HNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPT 298
RP++IQ ++P+ L N++ ++ +G+GKT A+ + ++ ++ + S+ L +PT
Sbjct: 113 RPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRV--EPSDRYPQCLCLSPT 170
Query: 299 RELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLE 358
ELA Q KV +M K Y L L + K ER K S +I++ TPG L+
Sbjct: 171 YELALQTG----KVIEQMGKF--YPELKLAYAVRGNKLERGQKI--SEQIVIGTPGTVLD 222
Query: 359 LLERNPDLIPRFAKIDTLVLDEADRLLQ-DGHFDEFEKILKLLGKARKIKTSIDGKPTGS 417
+ + P+ KI VLDEAD ++ GH D+ +I ++L +
Sbjct: 223 WCSKLKFIDPK--KIKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------------- 265
Query: 418 GWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTN 477
Q ++FSATF + + WK + + N I+ K + +DT
Sbjct: 266 NCQMLLFSATF--------EDSVWKFAQKVVPDPNV-----------IKLKREEETLDTI 306
Query: 478 PEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISS 537
++ V ++ + L +LY I ++FC+ + L A L+
Sbjct: 307 KQYYVLCSSRDEKFQALC---NLYGAITIAQ----AMIFCHTRKTASWLAAELSKEGHQV 359
Query: 538 FQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPR 597
+ M + R +E+F+E GK +L+ ++V ARG+D+ + V+++ LP
Sbjct: 360 ALLSGEMMVEQRAAVIERFRE--------GKEKVLVTTNVCARGIDVEQVSVVINFDLPV 411
Query: 598 SAD------VYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
D Y+HR GRT R G++V + + SM L ++++ + K
Sbjct: 412 DKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 461
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 114 bits (286), Expect = 5e-25
Identities = 121/468 (25%), Positives = 196/468 (41%), Gaps = 74/468 (15%)
Query: 192 QTNDDLLQSNVFSSNVDIDDQEPPV--LPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKS 249
Q D L +S +V ++ PP+ E S +L+ L+ LGF PT IQ ++
Sbjct: 112 QMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQA 171
Query: 250 IPLALKGHNIMGKASTGSGKTLAYGIPI---IEQLIKDTSNDRSIGLIFTPTRELAHQVT 306
IP+ L G A TGSGKT A+ P+ ++ L S D +I +P RELA Q
Sbjct: 172 IPILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPSTDGIRAVILSPARELAAQTA 231
Query: 307 DHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLE-RNPD 365
+ K+ K + + I +T L L D ++++TP R ++ + D
Sbjct: 232 ----REGKKLIKGSNFHIRLMTKPLVKTADFSKLWCD----VLISTPMRLKRAIKAKKID 283
Query: 366 LIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFS 425
L +K++ LVLDE+D+L + + + ++K I++ +FS
Sbjct: 284 L----SKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRS--------------LFS 325
Query: 426 ATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQ 485
AT + + L + I + VII ++ +
Sbjct: 326 AT--------------------------LPDSVEELARSIMHDAVRVII--GRKNTASET 357
Query: 486 VKESLIECLPMERDLYV--YYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSS 543
VK+ L+ E L F L+F + + K+L L I + IHS
Sbjct: 358 VKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSD 417
Query: 544 MAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYI 603
+ R +++F + G+ +LIA+DV ARG+D GI V++Y P SA YI
Sbjct: 418 LPPGERENAVDQF--------RAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYI 469
Query: 604 HRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKW 651
HR GR+ R G ++ + Q+ + LR + +T SS W
Sbjct: 470 HRIGRSGRAGRSGEAITFYTEQD----VPFLRNIANTMMSSGCEVPSW 513
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 114 bits (285), Expect = 6e-25
Identities = 119/462 (25%), Positives = 203/462 (43%), Gaps = 70/462 (15%)
Query: 192 QTNDDLLQSNVFSSN-VDIDDQEPPV-LPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKS 249
+T D L +V V+I + E V L W+ N L T+L+ L + + IQ
Sbjct: 353 ETADRLADCDVGQDRAVEIRNAEKDVRLTSWT-NSGLHPTILETLKRIKYNNVRTIQGAM 411
Query: 250 IPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI--------KDTSNDRSIGLIFTPTREL 301
IP L GH+++G+A T +GKT A+G+PII++++ K +D + LI PTREL
Sbjct: 412 IPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTREL 471
Query: 302 AHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLE 361
A Q+ + L+ N I+ L+ G S + + + I++ T GR ++
Sbjct: 472 AAQIHEALRTYCQ-----NTDIIVLLSYGQS-DRARSLNEIRNGCDILIGTCGRIMDFTV 525
Query: 362 RNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQT 421
++ + + LV DEADRLLQD D LG I + + QT
Sbjct: 526 KSHISL---LHLRFLVFDEADRLLQDMKKDP-------LGHLGAIIKDAGFMESAATRQT 575
Query: 422 MIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHK 481
++ SATF+ + T V N LMK++ + + + I +
Sbjct: 576 IMTSATFNASVMT----------------------VANELMKRLPGQDEMIKI-VLANGR 612
Query: 482 VTSQVKESLIECLPM-ERDLYVYYFIMMYPG----TTLVFCNAIDSVKKLNAFLNNLKIS 536
++ +V EC + E++ + + T++F D A L + +
Sbjct: 613 LSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGML 672
Query: 537 SFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLP 596
+ +H +Q R + + FK + +L+ +D+ +RG+D+S + V+++ LP
Sbjct: 673 AQTLHGDRSQDMREKLINDFKS--------NRVNLLVTTDLLSRGIDVSDLDRVINFDLP 724
Query: 597 -----RSADVYIHRSGRTARGDNE--GVSVMICSPQESMGPL 631
+ AD +IHR+GRT R + G+ V PQ L
Sbjct: 725 DGDPDQGADTFIHRAGRTGRTGRKENGLCVSFVDPQSDRDSL 766
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 114 bits (285), Expect = 6e-25
Identities = 112/432 (25%), Positives = 196/432 (44%), Gaps = 67/432 (15%)
Query: 243 TEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKD----TSNDRSIGLIFTPT 298
T +Q K+IP L+G +++ ++ TGSGKTLAY +P++E L K D + L+ PT
Sbjct: 352 TSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPT 411
Query: 299 RELAHQVTDHLQKVWTKMNKLNKYTIL---SLTGGLSIQKQERILKYDGSGRIIVATPGR 355
REL Q + +QK+ + YT + SL GG S +K E+ G I++ TPGR
Sbjct: 412 RELVMQTYELIQKL------VKPYTWIVPGSLLGGES-RKSEKARLRKGI-NILIGTPGR 463
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
++ L + K+ L+LDEADRLL+ G+ + +++++ + K R + K
Sbjct: 464 LVDHLLHTASF--KLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQR---AECEDKEL 518
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID 475
Q M+ SAT L +++ + + LK +N E L K ++ + +
Sbjct: 519 PQ-LQRMLLSAT----LTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEAL 573
Query: 476 TNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAI------DSVKKLNAF 529
+ + + +E + L + +L + Y +++ P LV +++ S K+ A
Sbjct: 574 LEVDDGL-GEYQEDVTGVLSIPENLQLSY-VVVPPKLRLVALSSLLAKEVDASPKQFKAI 631
Query: 530 LNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSK-----------------VGKPT-- 570
+ H M + R + +++ EK G T
Sbjct: 632 VFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQT 691
Query: 571 ---------------ILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNE 615
+L+A+DV RG+D+ IK V+ Y P++ ++HR GRTAR +
Sbjct: 692 ERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRK 751
Query: 616 GVSVMICSPQES 627
G +V+ +P E+
Sbjct: 752 GRAVLFLTPSEA 763
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 113 bits (283), Expect = 1e-24
Identities = 131/508 (25%), Positives = 217/508 (41%), Gaps = 79/508 (15%)
Query: 206 NVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGH-NIMGKAS 264
N + Q+P + +SE LS T LS GF + T +Q + + N + +A
Sbjct: 28 NSTMKSQQPTL---FSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAK 84
Query: 265 TGSGKTLAYGIPIIEQLIKD---TSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNK 321
TG+GKTLA+ + + ++K ++ + +I +PTRELA Q+ + +K+
Sbjct: 85 TGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVS 144
Query: 322 YTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEA 381
Y I GG S ++E ++ G+ +++ATPGR + L+ NP ++ + D+ +LDEA
Sbjct: 145 YAI----GGNSKMREENAIR-RGNANLLIATPGRLEDHLQ-NPRILESLS-TDSFILDEA 197
Query: 382 DRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFS---LDLFTKLDK 438
DRL+ G E IL + KT + + FSAT ++F +
Sbjct: 198 DRLMDMGF---AESILNIHEAVTTTKT-----------RKLCFSATMPPKVSNVFRGILG 243
Query: 439 TSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMER 498
T +K++ + + +I+T + +S + SL++ L
Sbjct: 244 TDFKLINCLDPNEPPTHE-----------RVPQFVIETKLDKVFSSSL--SLLQQLTSSN 290
Query: 499 DLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFL-NNLKISSFQIHSSMAQKNRLRNLEKFK 557
+VF I V + L N+LKI F +HS + R E F+
Sbjct: 291 P----------SSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFR 340
Query: 558 EQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGV 617
+ + IL A+DV ARG+D I V+ P + D YIHR GRT R G
Sbjct: 341 K--------CQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGE 392
Query: 618 SVMICSPQESMG-------PLRKLR------KVLSTKKSSNPRKTKWQNDVPMLPL---E 661
+ +I QE PL++ + LST +S + +K+ + L +
Sbjct: 393 AYLILLEQEKPFLNSIKHLPLKRATIEPLSDQALSTLRSDIEKSSKFSRTNALKTLYGSK 452
Query: 662 PDIVSQLRERSKIASELADDEIATKSLH 689
P + S +R + + IA SLH
Sbjct: 453 PHVFSGSSQRRATGKNIHESAIALFSLH 480
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 113 bits (283), Expect = 1e-24
Identities = 113/437 (25%), Positives = 186/437 (41%), Gaps = 82/437 (18%)
Query: 191 DQTNDDLL--QSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLK 248
DQ +++L Q F+S D+ + + M L +L+G+ GF +P+ IQ +
Sbjct: 17 DQKLNEVLEGQDEFFTSYDDVHES--------FDAMGLQENLLRGIYAYGFEKPSAIQQR 68
Query: 249 SIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDH 308
I KG +++ +A +G+GKT + +++QL D S + L+ PTRELA Q+
Sbjct: 69 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL--DFSLIQCQALVLAPTRELAQQI--- 123
Query: 309 LQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIP 368
+KV + + + GG S+++ +RIL+ ++V TPGR ++L+R
Sbjct: 124 -EKVMRALGDYLGVKVHACVGGTSVREDQRILQ--AGVHVVVGTPGRVFDMLKRQS---L 177
Query: 369 RFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATF 428
R I VLDEAD +L G D+ I +LL KI Q +FSAT
Sbjct: 178 RADNIKMFVLDEADEMLSRGFKDQIYDIFQLL--PPKI-------------QVGVFSATM 222
Query: 429 SLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKE 488
+ K F SKPV I + +K+
Sbjct: 223 PPEALEITRK----------------------------FMSKPVRILVKRDELTLEGIKQ 254
Query: 489 SLIEC------LPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHS 542
+ L DLY I +++F N V L + + + H
Sbjct: 255 FYVNVEKEEWKLETLCDLYETLAITQ----SVIFVNTRRKVDWLTDKMRSRDHTVSATHG 310
Query: 543 SMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVY 602
M Q R + +F+ G +LI +D+ ARG+D+ + V+++ LP + Y
Sbjct: 311 DMDQNTRDIIMREFRS--------GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENY 362
Query: 603 IHRSGRTARGDNEGVSV 619
+HR GR+ R +GV++
Sbjct: 363 LHRIGRSGRFGRKGVAI 379
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 113 bits (282), Expect = 1e-24
Identities = 112/470 (23%), Positives = 221/470 (46%), Gaps = 93/470 (19%)
Query: 189 TEDQTNDDLLQSNVFSSNVDI-----DDQEPPVLPEWS----ENMDLSFTVLKGLSGLGF 239
T+ ND+ SN+ + ++ D Q P P +S E ++L +LKG+ + F
Sbjct: 78 TKQSENDE---SNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKF 134
Query: 240 TRPTEIQLKSIPLALKG--HNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTP 297
+P++IQ K++PL L N++G++ +G+GKT A+ + ++ ++ D S + + P
Sbjct: 135 QKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV--DASVPKPQAICLAP 192
Query: 298 TRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGL--SIQKQERILKYDGSGRIIVATPGR 355
+RELA Q+ D + ++ KYT + G+ S+ K +I +I++ TPG
Sbjct: 193 SRELARQIMD-------VVTEMGKYTEVKTAFGIKDSVPKGAKI-----DAQIVIGTPGT 240
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLL-QDGHFDEFEKILKLLGKARKIKTSIDGKP 414
++L++R L R K+ VLDEAD +L Q G D+ +I LL + +I
Sbjct: 241 VMDLMKRR-QLDARDIKV--FVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI-------- 289
Query: 415 TGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVII 474
++FSATFS +++K + + A +I+ K++ + +
Sbjct: 290 -------VLFSATFS----ERVEKYAERFAPNAN---------------EIRLKTEELSV 323
Query: 475 DTNPEHKVTSQVKESLIECLPMER--DLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNN 532
+ +K+ ++C E ++ V + ++ G +++FC D+ +++
Sbjct: 324 EG---------IKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEI------ 368
Query: 533 LKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLH 592
+ + H+ L ++ + + +VG +L+ ++V ARG+D+S + V++
Sbjct: 369 ARRMTADGHTVACLTGNLEGAQR--DAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 426
Query: 593 YHLP------RSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRK 636
Y +P Y+HR GRT R GVS+ ++S + +++
Sbjct: 427 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQE 476
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 113 bits (282), Expect = 1e-24
Identities = 114/423 (26%), Positives = 185/423 (42%), Gaps = 67/423 (15%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIP----IIEQLIKDT 285
+LK + +G +PT IQ ++ P+ L+G +++ A TG+GKTL+Y +P + Q I
Sbjct: 233 LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 292
Query: 286 SNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGS 345
+ L+ TPTRELA V K K K + + GG + + +I
Sbjct: 293 QRNGPGMLVLTPTRELALHVEAECSKYSYKGLKS-----ICIYGGRN--RNGQIEDISKG 345
Query: 346 GRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARK 405
II+ATPGR +L N I LV+DEAD++L + KIL
Sbjct: 346 VDIIIATPGRLNDLQMNNS---VNLRSITYLVIDEADKMLDMEFEPQIRKIL-------- 394
Query: 406 IKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKI 465
+D +P QT++ SAT+ + + L++L
Sbjct: 395 ----LDVRPDR---QTVMTSATWP---------------------DTVRQLALSYL---- 422
Query: 466 QFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFI--MMYPGTTLVFCNAIDSV 523
K ++ N + VK+++I E+ F+ M ++F +
Sbjct: 423 --KDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIA 480
Query: 524 KKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLD 583
L++ N IS+ +H + Q ++ R +E FK G ILI +D+ +RGLD
Sbjct: 481 DDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKS--------GNIKILITTDIVSRGLD 532
Query: 584 ISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKS 643
++ + HV +Y PR+ DVY+HR G R G SV + + ++S +L K+L
Sbjct: 533 LNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSK-MAGELIKILDRANQ 591
Query: 644 SNP 646
S P
Sbjct: 592 SVP 594
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 113 bits (282), Expect = 1e-24
Identities = 103/423 (24%), Positives = 186/423 (43%), Gaps = 60/423 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E + L +L GL F PT+IQ +IP+AL +++ ++ +G+GKTL Y I +++
Sbjct: 28 EELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSF 87
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTD---HLQKVWTKMNKLNKYTILSLTGGLSIQKQER 338
+ + + +I PTRELA QV D HL K + + GG + K +
Sbjct: 88 NPNINQPHA--MIVVPTRELAIQVQDTFFHLCK------SFRDFKCSAFIGGTDVAKDRK 139
Query: 339 ILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDE-FEKIL 397
+ R+I+ TPGR L L E + +K+ LVLDEAD+L Q K++
Sbjct: 140 RM---NESRVIIGTPGRLLHLYENR---VFDVSKLRLLVLDEADQLYQTKSLQHTVSKLI 193
Query: 398 KLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQV 457
+ + K R+I + SAT+ +L +L K K + + E +
Sbjct: 194 EAMPKNRQI---------------IACSATYDQNLDERLAKVMDKPMLISNSERATVLLG 238
Query: 458 LNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFC 517
+ + ++ ++ V E ++ Q+ + LP E+ ++F
Sbjct: 239 IRQFVYELPQQNNSV-----EEMRLKLQILGQIFNQLPYEQ--------------AIIFA 279
Query: 518 NAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDV 577
++ +L I I +M Q RL E ++ + + IL+A+D+
Sbjct: 280 SSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMR--------ILVATDL 331
Query: 578 AARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKV 637
ARG+D V++ P+ Y+HR GR R ++G+++ + ++ R++ K
Sbjct: 332 MARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKK 391
Query: 638 LST 640
++T
Sbjct: 392 IAT 394
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 112 bits (281), Expect = 2e-24
Identities = 107/443 (24%), Positives = 195/443 (43%), Gaps = 74/443 (16%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
+L+ + GF P+E+Q + IP A+ G +++ +A +G GKT + + ++QL + +
Sbjct: 56 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-EPVTGQV 114
Query: 290 SIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRII 349
S+ L+ TRELA Q++ ++ M + + GGLSI+K E +LK I+
Sbjct: 115 SV-LVMCHTRELAFQISKEYERFSKYMPNVK---VAVFFGGLSIKKDEEVLK-KNCPHIV 169
Query: 350 VATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTS 409
V TPGR L L RN L I +LDE D++L+ L R ++
Sbjct: 170 VGTPGRIL-ALARNKSL--NLKHIKHFILDECDKMLEQ------------LDMRRDVQEI 214
Query: 410 IDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKS 469
+ T Q M+FSAT S E+ V +F
Sbjct: 215 F--RMTPHEKQVMMFSATLS----------------------KEIRPVCR------KFMQ 244
Query: 470 KPVIIDTNPEHKVTSQ-VKESLIECLPMERDLYVYYFI-MMYPGTTLVFCNAIDSVKKLN 527
P+ I + E K+T +++ ++ E++ ++ + ++ ++F ++ L
Sbjct: 245 DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALA 304
Query: 528 AFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGI 587
L + IH M Q+ RL ++FK+ + IL+A+++ RG+DI +
Sbjct: 305 QLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR--------ILVATNLFGRGMDIERV 356
Query: 588 KHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPR 647
+Y +P +D Y+HR R R +G+++ S + + K N
Sbjct: 357 NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE-------------NDAKILNDV 403
Query: 648 KTKWQNDVPMLPLEPDIVSQLRE 670
+ +++ ++ LP E DI S + +
Sbjct: 404 QDRFEVNISELPDEIDISSYIEQ 426
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 111 bits (277), Expect = 5e-24
Identities = 101/409 (24%), Positives = 181/409 (43%), Gaps = 59/409 (14%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDR 289
+L+ ++ GF P+E+Q IP ++ G +++ +A +G GKT + + ++Q I+ +
Sbjct: 62 LLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ-IEPVDGEV 120
Query: 290 SIGLIFTPTRELAHQVTDHLQKVWTKMNK-LNKYTILSLTGGLSI-QKQERILKYDGSGR 347
S+ L+ TRELA Q+ + + + +K L GG++I Q E S
Sbjct: 121 SV-LVLCHTRELAFQIKNE----YARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPH 175
Query: 348 IIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIK 407
I+VATPGR L+ I + + VLDE D+LL+ + R I+
Sbjct: 176 IVVATPGRLNALVREK---ILKVNSVKHFVLDECDKLLES------------VDMRRDIQ 220
Query: 408 TSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQF 467
P Q M+FSAT S ++ K L+ ++E + L+ L +
Sbjct: 221 EVFRATPPQK--QVMMFSATLSNEIRPICKKFMQNPLEIY--VDDETKLTLHGLQQHY-- 274
Query: 468 KSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLN 527
E K ++ L++ L + ++F ++ +L+
Sbjct: 275 --------VKLEEKAKNRKINDLLDSLEFNQ--------------VVIFVKSVSRANELD 312
Query: 528 AFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGI 587
L S IH + Q+ R++ + FK+ ++ I +A+DV RG+DI +
Sbjct: 313 RLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKR--------ICVATDVFGRGIDIERV 364
Query: 588 KHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRK 636
V++Y +P S D Y+HR GR R +G+++ S +E L K+++
Sbjct: 365 NIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQE 413
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 109 bits (272), Expect = 2e-23
Identities = 109/417 (26%), Positives = 182/417 (43%), Gaps = 60/417 (14%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E++ LS VL+GL GF RP+ +QLK+IPL G +++ +A +G+GKT + ++ L
Sbjct: 65 ESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSL 124
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+ + + + LI PTRE+A Q+ + + KM L + + GG + + + LK
Sbjct: 125 VLENLSTQI--LILAPTREIAVQIHSVITAIGIKMEGLECHVFI---GGTPLSQDKTRLK 179
Query: 342 YDGSGRIIVATPGRFLELLE---RNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILK 398
I V +PGR +L+E NP I F +LDEAD+LL++G F E
Sbjct: 180 ---KCHIAVGSPGRIKQLIELDYLNPGSIRLF------ILDEADKLLEEGSFQE------ 224
Query: 399 LLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVL 458
+I P Q + SAT+ L L K + ++
Sbjct: 225 ------QINWIYSSLPASK--QMLAVSATYPEFLANALTKYM---------RDPTFVRLN 267
Query: 459 NHLMKKIQFKSKPVIIDTNP-EHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFC 517
+ I K ++++ P HKV + + L E F + LVF
Sbjct: 268 SSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQE-----------LFSRIPFNQALVFS 316
Query: 518 NAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDV 577
N + L L++ + I +M Q RL + K K + +LI++D+
Sbjct: 317 NLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCR--------VLISTDL 368
Query: 578 AARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKL 634
+RG+D + V++ +P + Y+HR GR R G++V C E + ++
Sbjct: 369 TSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRI 425
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 108 bits (270), Expect = 3e-23
Identities = 115/426 (26%), Positives = 188/426 (43%), Gaps = 81/426 (19%)
Query: 236 GLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIF 295
GL PT++Q IP L G + + TGSGKTL+Y +P I L S D+ + L+
Sbjct: 73 GLLPPHPTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLL---ESGDKRL-LVI 128
Query: 296 TPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGR 355
PTREL QV +V+ K ++ I+ +TG +SI+ Q L+ + ++TPGR
Sbjct: 129 VPTRELVSQV----GQVFRKFSE-GLLRIVEITGEVSIESQR--LQVSRPFDVAISTPGR 181
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
ELLE + + +V+DEADRL+Q + IL+ + ++ + P
Sbjct: 182 LRELLE-----LKSIGGFEYVVVDEADRLMQHDIRSDVTFILERM--KPEVASFFSATPF 234
Query: 416 GSGWQTMIFSATFSL-----DLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQ-FKS 469
T I S+ + F ++K E QVL ++ + + +
Sbjct: 235 EWSGGTRILVGNVSVGRDVEEFFMYVEK-------------KEKMQVLGEILVSCEGWLA 281
Query: 470 KPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAF 529
K + +D N +VK+ +VFCN+I + + L+
Sbjct: 282 KNMGVDRN-----GLEVKK------------------------IIVFCNSIRTCENLHKR 312
Query: 530 LNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKH 589
L + +HS + R +E + G+ +LIA+D+ RG+DI +
Sbjct: 313 FRQLLV----LHSRRTMQERKAVIEALE---------GERAVLIATDLGGRGIDIKDVDL 359
Query: 590 VLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKT 649
V++Y LPR+ D Y+HR GRT R MIC +E L KL++++ + + P
Sbjct: 360 VVNYDLPRAVDGYVHRCGRTGRQRKGMALSMIC--REDREILPKLKRLVEKRGGTVPGFM 417
Query: 650 KWQNDV 655
+ DV
Sbjct: 418 NVKEDV 423
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 108 bits (269), Expect = 4e-23
Identities = 121/459 (26%), Positives = 203/459 (43%), Gaps = 71/459 (15%)
Query: 232 KGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL-IKDTSNDRS 290
+ L F PT IQ++++P+ L+ +M A TGSGKTLA+ PII L T+ R+
Sbjct: 132 QNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRA 191
Query: 291 IGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIV 350
L+ PTRELA Q+ ++ T+ L + I ++ E +YD I+V
Sbjct: 192 --LVLAPTRELAQQIYRECAEL-TRETGLRTHFISKVSEAKQKHGAECKQRYD----ILV 244
Query: 351 ATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSI 410
+TP R LL++ P L+ + ++ VLDEADRL+++G + F++ L + A T
Sbjct: 245 STPNRVRFLLQQEPPLLD-LSHVEWFVLDEADRLMEEGQ-NNFKEQLDDIYAACSNPTKC 302
Query: 411 DGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSK 470
FSAT+++ + W L HL ++
Sbjct: 303 ----------VAFFSATYTVPV------AKW---------------ALRHLKNLVR---- 327
Query: 471 PVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPG---TTLVFCNAIDSVKKLN 527
I ++ T V++ L+ + E V ++ G LVF + + K+L
Sbjct: 328 ---ITIGVQNSATETVQQELL-FVGSEGGKLVAIRDLVRQGLQPPVLVFVQSKERAKQLF 383
Query: 528 AFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGI 587
L I+ IH+ +Q R ++ F+E G +LI +++ RG+D G+
Sbjct: 384 EELLYDGINVDVIHAERSQHQRDNCVKAFRE--------GSIWVLICTELMGRGIDFKGV 435
Query: 588 KHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPR 647
V++Y P + YIHR GRT R G ++ + QE LR + ++ + P
Sbjct: 436 NLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFT-QEDTSNLRGIALIIKNSGGTVPE 494
Query: 648 KTKWQNDVPMLPLEPDIVSQLRERSKIASELADDEIATK 686
ML ++ S+ + R+K L ++I+TK
Sbjct: 495 Y--------MLQMKKVRKSEAKMRAK--KPLDREDISTK 523
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 107 bits (266), Expect = 9e-23
Identities = 99/415 (23%), Positives = 179/415 (42%), Gaps = 63/415 (15%)
Query: 238 GFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTP 297
GF P+E+Q +IP ++ G +++ +A +G GKT + + ++QL D ++
Sbjct: 81 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL--DPVPGEVAVVVICN 138
Query: 298 TRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK-YDGSGRIIVATPGRF 356
RELA+Q+ + + M + GG I K +LK D + I+VATPGR
Sbjct: 139 ARELAYQIRNEYLRFSKYMPDVKTAVFY---GGTPISKDAELLKNKDTAPHIVVATPGRL 195
Query: 357 LELL-ERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
L+ E+ DL + + V+DE D++L++ L R ++ P
Sbjct: 196 KALVREKYIDL----SHVKNFVIDECDKVLEE------------LDMRRDVQEIFRATPR 239
Query: 416 GSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIID 475
Q M+FSAT S E+ + +F P+ I
Sbjct: 240 DK--QVMMFSATLS----------------------QEIRPICR------RFLQNPLEIF 269
Query: 476 TNPEHKVTSQ-VKESLIECLPMERDLYVYYFI-MMYPGTTLVFCNAIDSVKKLNAFLNNL 533
+ E K+T +++ I+ E++ + + + ++F + +L LN
Sbjct: 270 VDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNAS 329
Query: 534 KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHY 593
+ +H M Q+ R+ + FK+ ++ I +++DV RG+DI I ++Y
Sbjct: 330 NFPAITVHGHMKQEERIARYKAFKDFEKR--------ICVSTDVFGRGIDIERINLAINY 381
Query: 594 HLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRK 648
L AD Y+HR GR R +G+++ S +E L K+++ K + P +
Sbjct: 382 DLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEE 436
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 107 bits (266), Expect = 9e-23
Identities = 103/391 (26%), Positives = 173/391 (43%), Gaps = 28/391 (7%)
Query: 251 PLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQ 310
P L+ ++ A TGSGKT+ Y +P++ + S +I P + L Q+ D +
Sbjct: 254 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQ-AVILVPVQTLVAQIVDEFK 312
Query: 311 KVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRF 370
+ W + + K ++SL+G +K+ R L D +IVATP R ++ L
Sbjct: 313 R-WNDESGVAK--VVSLSGANDFEKEARQLASDPPN-VIVATPARLVQHLTSKIPPPIDL 368
Query: 371 AKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSL 430
+K+ L++DEADR+ + + + + L G ++ D Q ++ SAT S
Sbjct: 369 SKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSK 428
Query: 431 DLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESL 490
D+ + W + K + +K I P + + + S + L
Sbjct: 429 DVE---ELHLWNLFKP------RLFSATAVSVKDIT-SGIPQVDHVSGRLALPSSISHRL 478
Query: 491 IECLPMERDLYVYYFIMMYP-GTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQ--- 546
+ P L VY I TL+F N + S +L L L F++ AQ
Sbjct: 479 VVTDPKFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFG 538
Query: 547 KNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRS 606
K R + LEKF + + +LI SDV ARG D++ + V++Y+LP +++HR+
Sbjct: 539 KRRYKMLEKFNKNENR--------VLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRA 590
Query: 607 GRTARGDNEGVSVMICSPQESMGPLRKLRKV 637
GRT R +G + + +ES K+ KV
Sbjct: 591 GRTGRAGQDGYVISV-GDKESKRLFVKMLKV 620
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 106 bits (264), Expect = 2e-22
Identities = 105/414 (25%), Positives = 184/414 (44%), Gaps = 78/414 (18%)
Query: 194 NDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLA 253
NDD+ SS +E ++P + + M L +L+G+ GF +P+ IQ ++IP
Sbjct: 8 NDDMATVEFESS------EEVSIIPTF-DKMGLREDLLRGIYAYGFEKPSAIQQRAIPAI 60
Query: 254 LKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVW 313
LK +++ +A +G+GKT + I +++ L DT + LI +PTRELA Q+ QKV
Sbjct: 61 LKARDVIAQAQSGTGKTATFSISVLQSL--DTQVRETQALILSPTRELAVQI----QKVV 114
Query: 314 TKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKI 373
+ + GG ++ E I K D ++ TPGR +++ R +L R K+
Sbjct: 115 LALGDYMNVQCHACIGGTNL--GEDIRKLDYGQHVVSGTPGRVFDMIRRR-NLRTRAIKL 171
Query: 374 DTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLF 433
LVLDEAD +L G ++ I + L P G+ Q ++ SAT ++
Sbjct: 172 --LVLDEADEMLNKGFKEQLYDIYRYL-------------PPGA--QVVLLSATLPHEI- 213
Query: 434 TKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIEC 493
L+ TS +F + P+ I + +K+ +
Sbjct: 214 --LEMTS-------------------------KFMTDPIRILVKRDELTLEGIKQFFV-- 244
Query: 494 LPMERDLYVY-YFIMMYPGTTL----VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKN 548
++R+ + + I +Y T+ +FCN V L + + +H M QK+
Sbjct: 245 -AVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKD 303
Query: 549 RLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVY 602
R ++ K + G +LI++DV ARGLD+ + ++H+ ++
Sbjct: 304 R--------DEVMKEFRAGTTRVLISTDVWARGLDVPQVS-LVHFRFSAKNSIF 348
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 105 bits (262), Expect = 3e-22
Identities = 109/379 (28%), Positives = 164/379 (42%), Gaps = 65/379 (17%)
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPT 298
F T IQ +G NI G A TG+GKTLA+ +PI+ ++ D ++ LI P+
Sbjct: 15 FKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRI--DPKVKQTQVLILAPS 72
Query: 299 RELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLE 358
+ELA Q T V + L ++ SL GG + ++Q LK D I+V T GR L
Sbjct: 73 QELAMQTT----AVAREWGALVDVSVTSLIGGANGRRQADKLKKD-KPHIVVGTLGRVLT 127
Query: 359 LLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSG 418
+L+ + + T++ DEAD +L D D + + A ++ T +
Sbjct: 128 MLDGG---ALKLNGLQTVIFDEADAMLSDERRDSLQAL------AAQLPTDV-------- 170
Query: 419 WQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNP 478
Q +FSAT +DL D ++ + G + P I T+
Sbjct: 171 -QLGLFSATSGVDLKYVADTFGQEVRPVSVGTD------------------APAAI-THE 210
Query: 479 EHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSF 538
V + K SL+ L + LVF N I + + A L + S
Sbjct: 211 FQYVDQKAKASLLIQLARNKQ------------QALVFFNTISGLVNMQATLRHAHASVM 258
Query: 539 QIHSS-MAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPR 597
I S+ Q R L FK+ G+ ++L+ +DVAARGLDI + V++ LP+
Sbjct: 259 SIGSNDKRQVQRADALRLFKK--------GEVSLLLVTDVAARGLDIEDLPLVVNAQLPQ 310
Query: 598 SADVYIHRSGRTARGDNEG 616
YIHR+GRT R G
Sbjct: 311 RKKTYIHRAGRTGRMGKPG 329
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 105 bits (261), Expect = 4e-22
Identities = 114/432 (26%), Positives = 189/432 (43%), Gaps = 84/432 (19%)
Query: 205 SNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKAS 264
S V D + ++ E +M LS +LK + GF +P+ IQ +IP L+GHN++ ++
Sbjct: 37 SGVGTDRGQKLLVAEHFSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSK 96
Query: 265 TGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTI 324
+G+GKT+AY + L +R+ ++ TPTREL+ QVT+ I
Sbjct: 97 SGTGKTIAYTCGV---LGNTKIGERTQVMVVTPTRELSTQVTE---------------VI 138
Query: 325 LSLTGGLSIQ----KQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDE 380
L G L I+ + +I G ++V +PG L+L+E + + +VLDE
Sbjct: 139 SGLAGPLGIKVFSALKNKITDSIGE-EVVVGSPGTILKLMELGK---LNYKGVKMIVLDE 194
Query: 381 ADRLL-QDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKT 439
AD LL +D + +ILKL+ SG Q + FSATFS + ++
Sbjct: 195 ADILLDKDMMGTQTFRILKLI----------------SGAQMIFFSATFSEQVKQTIEFY 238
Query: 440 SWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERD 499
+ +K N + +++ K I+ E+K + +L +
Sbjct: 239 APDAVKMYEERNGKPDEI------------KLFYIEAEGENK-----RRAL-------KS 274
Query: 500 LYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQ 559
LY Y I ++F + +V L L + S +H + + R + + F+
Sbjct: 275 LYEYLSI----SQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSS 330
Query: 560 SEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLP-----RSADVYIHRSGRTARGDN 614
K IL+ +DV +RG+DI + +++Y LP S YIHR GR+ R
Sbjct: 331 KSK--------ILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGR 382
Query: 615 EGVSVMICSPQE 626
G V +E
Sbjct: 383 TGFVVDFVRDEE 394
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 102 bits (254), Expect = 2e-21
Identities = 96/387 (24%), Positives = 179/387 (45%), Gaps = 63/387 (16%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E+ L + L G+ PT IQ++ IP+ L G +I+ A TGSGKT A+ +P+I +
Sbjct: 206 EHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRA 265
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
+ ++ + LI TPTRELA Q+ +++ M+ L + + L GGL + Q + +
Sbjct: 266 LFESKTPSA--LILTPTRELAIQIERQAKEL---MSGLPRMKTVLLVGGLPLPPQ--LYR 318
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
++I+ATPGR L++++++ + +V+DEAD +L+ G + IL+ +
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSS---VELCGVKIVVVDEADTMLKMGFQQQVLDILENI- 374
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
+ QT++ SAT + + ++ GE N + +
Sbjct: 375 --------------PNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQI 420
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLY---VYYFIMMYPGTTLVFCN 518
+ ++ +K K+ L E L ++ L+ V F+ G L+
Sbjct: 421 ILWVEDPAK----------------KKKLFEIL-NDKKLFKPPVLVFVDCKLGADLL--- 460
Query: 519 AIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVA 578
++V+K+ + S IHS +Q R L+ E G +++++ V
Sbjct: 461 -SEAVQKITG------LKSISIHSEKSQIERKNILKGLLE--------GDYEVVVSTGVL 505
Query: 579 ARGLDISGIKHVLHYHLPRSADVYIHR 605
RGLD+ ++ V+++ +P S D Y+H+
Sbjct: 506 GRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 101 bits (252), Expect = 4e-21
Identities = 118/443 (26%), Positives = 189/443 (42%), Gaps = 78/443 (17%)
Query: 179 NVKGEAGTVVTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLG 238
+V+GE + E QT D+ L+S + P+ EN+ + LG
Sbjct: 91 SVRGEE--LQQEMQTVDEFLESTGMQ-----------IHPQLLENLRVE---------LG 128
Query: 239 FTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLI-KDTSNDRSIG----L 293
T IQ + +P+ + + A TG GKT+ Y +PI+++L+ K+ +R + L
Sbjct: 129 IKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVL 188
Query: 294 IFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATP 353
I TP RELA Q+ V K+ + + SL GG + KQ + I+VAT
Sbjct: 189 ILTPGRELATQIAG----VTEKLTQGTNLKVQSLLGGNT--KQLMMNPQFEEVDILVATL 242
Query: 354 GRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGK 413
G +L+ I R ++ LVLDEAD LL D D+ L R+ + K
Sbjct: 243 GALSKLVTTG---IYRMEQVRHLVLDEADTLLDDTFTDKLSYFL------RRFPFHLVQK 293
Query: 414 PTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVI 473
+G Q ++ SAT + + +IL + E V HL + + ++ +
Sbjct: 294 ED-AGTQMILASAT--------MPTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFL 344
Query: 474 IDTNPEHKVT--SQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLN 531
+ + T S VK L + P+ +VF N + ++ FLN
Sbjct: 345 RLSKADRPATLLSLVKHDLAKRRPL-----------------IVFSNKSTTSDFVSIFLN 387
Query: 532 NLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVL 591
N ++ ++ M K RL E+F+ G +L +DV +RGLD + +HV+
Sbjct: 388 NSGVNCLNLNGDMLMKIRLGRFEQFQN--------GHCDVLSTTDVGSRGLDTTRARHVV 439
Query: 592 HYHLPRSADVYIHRSGRTARGDN 614
++ P YIHR GR R N
Sbjct: 440 NFDFPLHVSDYIHRCGRIGRVGN 462
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 101 bits (251), Expect = 5e-21
Identities = 122/445 (27%), Positives = 189/445 (42%), Gaps = 66/445 (14%)
Query: 232 KGLSGLGFTRPTEIQLKSIPLALKGH---------NIMGKASTGSGKTLAYGIPIIEQLI 282
+ L + R +Q + IP L+ H +I A TGSGKTLA+ IPI+ QL+
Sbjct: 150 QALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIV-QLL 208
Query: 283 KDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKY 342
+ + L+ P ELA QV + ++ +K + +LS L ++++ + +Y
Sbjct: 209 SQRVDCKVRALVVLPVAELALQVYRVISELCSKTEL--EVCLLSKQHKLEDEQEKLVEQY 266
Query: 343 DGS----GRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQ----------DG 388
G I+V TPGR ++ L + K LV+DEADR++ D
Sbjct: 267 KGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKF--LVIDEADRIMDAVFQNWLYHLDS 324
Query: 389 HFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLD-------------LFTK 435
H E L L G + + G ++FSAT S D LF
Sbjct: 325 HVKETTDQL-LAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFAT 383
Query: 436 LDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLP 495
+ + +LK A E + E L QF + T P ++T Q + + P
Sbjct: 384 V--LTMPVLKDATEEGADTEA----LTDPGQFVGRY----TTPA-ELTEQYCVTELRLKP 432
Query: 496 MERDLYVYYFIMMYPGTT-LVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLE 554
L V+ + Y L F N+ D +L L L FQ +S+ +
Sbjct: 433 ----LTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVL----FQKYSTKVSELSGNLSA 484
Query: 555 KFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDN 614
K + + ++ GK LI SD ARG+D++ + VL Y PR YIHR GRTAR
Sbjct: 485 KVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGR 544
Query: 615 EGVSVMICSPQESMGPLRKLRKVLS 639
+G +V + + Q+ + +K+LS
Sbjct: 545 KGTAVTVLTEQD----MTLFKKILS 565
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 97.8 bits (242), Expect = 6e-20
Identities = 105/430 (24%), Positives = 176/430 (40%), Gaps = 71/430 (16%)
Query: 232 KGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSI 291
+ L T T IQ +IP +++ A TGSGKT+AY PI+++L
Sbjct: 59 ENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYR- 117
Query: 292 GLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERIL-KYDGSGRIIV 350
+I PTREL Q+ +K+ K LS + +K ++ KYD + +
Sbjct: 118 AIIVAPTRELCEQIYRQAEKL--SFGTSLKIIELSKSNEKIQEKAPKLREKYD----MCI 171
Query: 351 ATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSI 410
TP R ++ ++ F K++ V+DEADRL + G ++ + IL + K+
Sbjct: 172 GTPMRLVQAIQTGLS----FEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKS-- 225
Query: 411 DGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSK 470
+FSAT + E+ +V+
Sbjct: 226 ------------LFSATIPSRV-------------------EELAKVVT---------VD 245
Query: 471 PVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGT----TLVFCNAIDSVKKL 526
P+ I + T + + L+ + + V M+ G ++F I+ K L
Sbjct: 246 PIRIIVGLKDAATDSIDQRLL-FVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKAL 304
Query: 527 NAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISG 586
L +I IH + Q R L KF++ G+ +LIA+D+ ARG+D G
Sbjct: 305 YTELLFDEIHVGVIHGELPQAKREEALAKFRK--------GEIWVLIATDLLARGIDFHG 356
Query: 587 IKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNP 646
+K V+++ P+S YIHR GRT R N G +V + ++ ++ + +SS
Sbjct: 357 VKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDG----EYIKLIAGVMRSSGC 412
Query: 647 RKTKWQNDVP 656
W +P
Sbjct: 413 EVPNWVMALP 422
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 97.8 bits (242), Expect = 6e-20
Identities = 113/467 (24%), Positives = 200/467 (42%), Gaps = 97/467 (20%)
Query: 207 VDIDDQEPPVLPEWS----ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLAL--KGHNIM 260
VD+ Q+P P +S + L VLK L + F PT IQ ++PL L N++
Sbjct: 194 VDVQRQDPKS-PLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLI 252
Query: 261 GKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLN 320
+A +G+GKT A+ + ++ ++ + + I L PT ELA Q+ + ++K+ ++ L
Sbjct: 253 AQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICL--APTLELAKQIGEVVEKMGKFIDNLK 310
Query: 321 KYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDE 380
+ ++ GG + R L + +I++ TPG + L++ + P +KI LVLDE
Sbjct: 311 IH--YAIKGGNMAAMRGRKL----TEQIVIGTPGITRDYLQKYKCIDP--SKIRCLVLDE 362
Query: 381 ADRLLQDGHFDEFEKILKLLGKARKIKTSIDG--KPTGSGWQTMIFSATFSLDLFTKLDK 438
AD ++ F + I T+I + Q+M+FSAT+
Sbjct: 363 ADVMIYHQGFTD-------------ISTTIYNMVEDASDSVQSMLFSATYD--------- 400
Query: 439 TSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMER 498
E V+N K I+ +++ E + +K+ ++C R
Sbjct: 401 ----------------EPVINFATKIIK---NAIVVMLKREEQALPNIKQFYVQCAC--R 439
Query: 499 DLYVYYFIMMYPG----TTLVFCNAIDSVKKLNAFLNNLKISSFQI---HSSMAQKNRLR 551
D + +Y G ++++FC+ SV L N++ Q+ H M R
Sbjct: 440 DSKYAAIVNLYSGLAVASSVIFCHTKASVMWL---YENMRARGHQVDVLHGDMTVVERAD 496
Query: 552 NLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLP--------------- 596
+ FK G +LI ++V ARG+D++ + V++Y LP
Sbjct: 497 TIIHFKR--------GDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGF 548
Query: 597 --RSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
+ Y+HR GRT R G+++ + ++SM + L K
Sbjct: 549 TQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHFQMK 595
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 97.8 bits (242), Expect = 6e-20
Identities = 113/467 (24%), Positives = 200/467 (42%), Gaps = 97/467 (20%)
Query: 207 VDIDDQEPPVLPEWS----ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLAL--KGHNIM 260
VD+ Q+P P +S + L VLK L + F PT IQ ++PL L N++
Sbjct: 219 VDVQRQDPKS-PLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLI 277
Query: 261 GKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLN 320
+A +G+GKT A+ + ++ ++ + + I L PT ELA Q+ + ++K+ ++ L
Sbjct: 278 AQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICL--APTLELAKQIGEVVEKMGKFIDNLK 335
Query: 321 KYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDE 380
+ ++ GG + R L + +I++ TPG + L++ + P +KI LVLDE
Sbjct: 336 IH--YAIKGGNMAAMRGRKL----TEQIVIGTPGITRDYLQKYKCIDP--SKIRCLVLDE 387
Query: 381 ADRLLQDGHFDEFEKILKLLGKARKIKTSIDG--KPTGSGWQTMIFSATFSLDLFTKLDK 438
AD ++ F + I T+I + Q+M+FSAT+
Sbjct: 388 ADVMIYHQGFTD-------------ISTTIYNMVEDASDSVQSMLFSATYD--------- 425
Query: 439 TSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMER 498
E V+N K I+ +++ E + +K+ ++C R
Sbjct: 426 ----------------EPVINFATKIIK---NAIVVMLKREEQALPNIKQFYVQCAC--R 464
Query: 499 DLYVYYFIMMYPG----TTLVFCNAIDSVKKLNAFLNNLKISSFQI---HSSMAQKNRLR 551
D + +Y G ++++FC+ SV L N++ Q+ H M R
Sbjct: 465 DSKYAAIVNLYSGLAVASSVIFCHTKASVMWL---YENMRARGHQVDVLHGDMTVVERAD 521
Query: 552 NLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLP--------------- 596
+ FK G +LI ++V ARG+D++ + V++Y LP
Sbjct: 522 TIIHFKR--------GDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGF 573
Query: 597 --RSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
+ Y+HR GRT R G+++ + ++SM + L K
Sbjct: 574 TQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHFQMK 620
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 97.8 bits (242), Expect = 6e-20
Identities = 113/467 (24%), Positives = 200/467 (42%), Gaps = 97/467 (20%)
Query: 207 VDIDDQEPPVLPEWS----ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLAL--KGHNIM 260
VD+ Q+P P +S + L VLK L + F PT IQ ++PL L N++
Sbjct: 603 VDVQRQDPKS-PLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLI 661
Query: 261 GKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLN 320
+A +G+GKT A+ + ++ ++ + + I L PT ELA Q+ + ++K+ ++ L
Sbjct: 662 AQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICL--APTLELAKQIGEVVEKMGKFIDNLK 719
Query: 321 KYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDE 380
+ ++ GG + R L + +I++ TPG + L++ + P +KI LVLDE
Sbjct: 720 IH--YAIKGGNMAAMRGRKL----TEQIVIGTPGITRDYLQKYKCIDP--SKIRCLVLDE 771
Query: 381 ADRLLQDGHFDEFEKILKLLGKARKIKTSIDG--KPTGSGWQTMIFSATFSLDLFTKLDK 438
AD ++ F + I T+I + Q+M+FSAT+
Sbjct: 772 ADVMIYHQGFTD-------------ISTTIYNMVEDASDSVQSMLFSATYD--------- 809
Query: 439 TSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMER 498
E V+N K I+ +++ E + +K+ ++C R
Sbjct: 810 ----------------EPVINFATKIIK---NAIVVMLKREEQALPNIKQFYVQCAC--R 848
Query: 499 DLYVYYFIMMYPG----TTLVFCNAIDSVKKLNAFLNNLKISSFQI---HSSMAQKNRLR 551
D + +Y G ++++FC+ SV L N++ Q+ H M R
Sbjct: 849 DSKYAAIVNLYSGLAVASSVIFCHTKASVMWL---YENMRARGHQVDVLHGDMTVVERAD 905
Query: 552 NLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLP--------------- 596
+ FK G +LI ++V ARG+D++ + V++Y LP
Sbjct: 906 TIIHFKR--------GDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGF 957
Query: 597 --RSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTK 641
+ Y+HR GRT R G+++ + ++SM + L K
Sbjct: 958 TQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHFQMK 1004
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 96.3 bits (238), Expect = 2e-19
Identities = 109/388 (28%), Positives = 173/388 (44%), Gaps = 79/388 (20%)
Query: 258 NIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMN 317
+I+ A+TGSGKTLAY IPI++ L K N R +I PT+ L +Q V+T +
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQIN-RLRCIIIVPTKLLINQ-------VYTTLT 280
Query: 318 KLNKYTILSLTGGLSIQKQERILKYDG------SGRIIVATPGRFLELLERNPDLIPRFA 371
KL + T L +SI K E LK + I++ TPGR ++ L
Sbjct: 281 KLTQGTSLI----VSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKS---INLK 333
Query: 372 KIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLD 431
+ L++DEADRLL K++ L K K+ T + G MIFSAT +
Sbjct: 334 NLKFLIIDEADRLLNQSFQGWCPKLMSHL-KTDKLDT-LPGNVI-----KMIFSATLT-- 384
Query: 432 LFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLI 491
N E LN +K K + T+ +++ +++ E I
Sbjct: 385 ------------------TNTEKLNGLN------LYKPKLFLKQTDKLYQLPNKLNEFNI 420
Query: 492 ECLPMERDLY----VYYFIMMY------PGTTLVFCNAIDSVKKL-------------NA 528
+P + +Y + Y I + L+F + +S +L ++
Sbjct: 421 N-IPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSS 479
Query: 529 FLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIK 588
L NL+ + I+S + ++ N +K +S+ TILI +D+ +RG+DI+ I
Sbjct: 480 VLKNLQNLAVSINSVNSNNSKAEN-KKIVANFSHHSESAGITILITTDIMSRGIDINDIT 538
Query: 589 HVLHYHLPRSADVYIHRSGRTARGDNEG 616
V++Y P S+ Y+HR GRTAR + G
Sbjct: 539 QVINYDPPMSSQQYVHRVGRTARANELG 566
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 96.3 bits (238), Expect = 2e-19
Identities = 71/182 (39%), Positives = 99/182 (54%), Gaps = 10/182 (5%)
Query: 230 VLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK--DTSN 287
VL L LGF T +Q +IPL ++ ++ +A TGSGKTLA+ IPI+E L++ +
Sbjct: 20 VLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLK 79
Query: 288 DRSIG-LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSG 346
+G +I TPTRELA Q+ D + +TK +++ + GG + + K G G
Sbjct: 80 KSQVGAIIITPTRELAIQI-DEVLSHFTK--HFPEFSQILWIGGRNPGEDVERFKQQG-G 135
Query: 347 RIIVATPGRFLELLERNP---DLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKA 403
IIVATPGR ++ R DL +D LVLDEADRLL G IL+ L K
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195
Query: 404 RK 405
R+
Sbjct: 196 RR 197
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 95.9 bits (237), Expect = 2e-19
Identities = 107/465 (23%), Positives = 209/465 (44%), Gaps = 56/465 (12%)
Query: 213 EPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALK----------GHNIMGK 262
+P E+S ++++S +++ L TR +Q +PL L+ G ++
Sbjct: 121 DPNTTVEFS-SLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVS 179
Query: 263 ASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKY 322
A+TGSGKTL+Y IPI+ Q + + R ++ PTREL QV + +
Sbjct: 180 AATGSGKTLSYVIPIV-QCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAG----L 234
Query: 323 TILSLTGGLSIQKQERILKYDGSG---RIIVATPGRFLELLERNPDLIPRFAKIDTLVLD 379
+ + TG S++ + L D + ++V+TPGR ++ + + + + +V+D
Sbjct: 235 QVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRY--MVID 292
Query: 380 EADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFT----K 435
EADRLL D + ++ + + ++ + S TF D+ T +
Sbjct: 293 EADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQN-----ISPTFLPDIDTLLPYR 347
Query: 436 LDKTSWKIL--KTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHK---VTSQVKESL 490
L K++ T + +++ + H + + ++K + +D E + + V +L
Sbjct: 348 LPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTL 407
Query: 491 IE---CLPMERDLYVYYFIMMYPGTTLV-FCNAIDSVKKLNAFLN------NLKISSFQI 540
E + E+ + +Y+ I T ++ F + ++ +L+ L N S
Sbjct: 408 QEYHVSVSSEKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLF 467
Query: 541 HSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSAD 600
SS+++ R + + +F G +L+ SD+ ARG+D++ ++V++Y P S
Sbjct: 468 TSSLSRDERKKIISRFA--------TGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVR 519
Query: 601 VYIHRSGRTARGDNEGVSVMICSPQES---MGPLRKLRKVLSTKK 642
Y+HR GRTAR EG + + E +++LR+ L K+
Sbjct: 520 SYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQLRRTLPIKR 564
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 93.6 bits (231), Expect = 1e-18
Identities = 109/448 (24%), Positives = 202/448 (44%), Gaps = 80/448 (17%)
Query: 188 VTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWS-ENMDLSFTVLKGLS-GLGFTRPTEI 245
+ E++ D +L+ S+ + + P E+++LS ++KGL + F +P++I
Sbjct: 59 IKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKI 118
Query: 246 QLKSIPLALKG--HNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAH 303
Q S+P+ + +++ +A GSGKT + + ++ ++ D + L PTRELA+
Sbjct: 119 QAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRV--DPTLREPQALCICPTRELAN 176
Query: 304 QVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSG-----RIIVATPGRFLE 358
Q + LQK + K+T +T L++ R G +++ TPG +
Sbjct: 177 QNMEVLQK-------MGKFT--GITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKK 227
Query: 359 LLERNPDLIPRFAKIDTLVLDEADRLLQ-DGHFDEFEKILKLLGKARKIKTSIDGKPTGS 417
+ L KI LV DEAD +L DG D+ KI+K +G+
Sbjct: 228 WMAFKR-LGLNHLKI--LVFDEADHMLATDGFRDDSLKIMKDIGRVNP------------ 272
Query: 418 GWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTN 477
+Q ++FSATF+ + + +T N ++ K + + +D+
Sbjct: 273 NFQVLLFSATFN-------ETVKDFVARTVKDPN------------QLFVKREDLALDSV 313
Query: 478 PEHKVTSQVKESLIECLPMERDLYVYYFIMMYP--GTTLVFCNAIDSVKKLNAFLNNLKI 535
++KV +++ IE + + IM G T++F S +K++ L +
Sbjct: 314 KQYKVVCPKEQNKIEVIKDQ--------IMELGDIGQTIIFVKTKASAQKVHKALAEMGY 365
Query: 536 SSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHL 595
+H ++ + +R + +++FKE + +LIA+DV ARG D + V++Y+L
Sbjct: 366 DVTSVHGNLTESDRDKIVKEFKECLTQ--------VLIATDVIARGFDQQRVNLVVNYNL 417
Query: 596 PR-------SADVYIHRSGRTARGDNEG 616
P +VY+HR GR R +G
Sbjct: 418 PTKYETGEPDYEVYLHRVGRAGRFGRKG 445
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 93.2 bits (230), Expect = 1e-18
Identities = 86/372 (23%), Positives = 161/372 (43%), Gaps = 64/372 (17%)
Query: 258 NIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMN 317
+++ +A +G+GKTL + + +E L +S+ + + I TPTRE++ Q+ + ++KV
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKV--IVTPTREISVQIKETVRKVAPTGA 108
Query: 318 KLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLV 377
+ + Y G S K I +I++ TPGR +L++ + +D V
Sbjct: 109 RTSVYV------GGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGA---MNMSHVDFFV 159
Query: 378 LDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLD 437
LDEAD+L+ + D+ I+ L + R Q +FSAT+ +L L
Sbjct: 160 LDEADKLMDEVFRDDINIIINSLPQIR---------------QVAVFSATYPRNLDNLLS 204
Query: 438 KTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLI-ECLPM 496
F ++ N + +K+ ++ +C PM
Sbjct: 205 ----------------------------TFLRDAALVRFNADDVQLFGIKQYVVAKCSPM 236
Query: 497 ERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKF 556
L + Y LVFC+ I + + L + + + S+M+QK+R +++
Sbjct: 237 LEKLTHVLKSIRYV-QALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKDRQLAVDQL 295
Query: 557 KEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG 616
+ + K IL++SD+ ARG+D + V++ + + Y HR GR AR G
Sbjct: 296 RAKRVK--------ILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIGRAARFGAHG 347
Query: 617 VSVMICSPQESM 628
+V + + ++
Sbjct: 348 AAVTLLEDERAL 359
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 93.2 bits (230), Expect = 1e-18
Identities = 104/457 (22%), Positives = 184/457 (39%), Gaps = 99/457 (21%)
Query: 258 NIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKM- 316
+I + TGSGKTL+Y +PI+ QL+ L+ PTR+LA QV D + +
Sbjct: 26 DICVNSPTGSGKTLSYALPIV-QLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 84
Query: 317 ----NKLNKYTILS----------LTGGLSIQKQERILKYDGSGRIIVATPGRFLELLER 362
+ + + +I L G+ + + + I+VATPGR ++ +
Sbjct: 85 LSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINN 144
Query: 363 NPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG--------------------- 401
+ LV+DE DRLL++ + +L+L
Sbjct: 145 TKGFTLEHLRY--LVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSL 202
Query: 402 ---KARKIKTSIDGKPTGSGWQTMIFSATFSLD--LFTKLDKTSWKILKTAGGENNEMEQ 456
+ + ++ GKP M+ SAT + D +LD + T GG + +
Sbjct: 203 QTVRRQSVERGFKGKPYPR-LVKMVLSATLTQDPSKLIQLD-LHHPLFMTTGGSRYRLPE 260
Query: 457 VLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTT-LV 515
L L + KPV Y+ + + G ++
Sbjct: 261 KLECLRLICETGMKPV----------------------------YLVALLKSWEGEKCII 292
Query: 516 FCNAIDSVKKLNAFLN---NLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTIL 572
F +++++ ++L LN + KI + + + Q R + L+ F++ G +L
Sbjct: 293 FTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRK--------GDIQVL 344
Query: 573 IASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLR 632
+ASD RG+D+ G+ +V++Y +P A +IHR+GRTAR G + S E +R
Sbjct: 345 VASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHE----VR 400
Query: 633 KLRKVLSTKKSSNPRKTKWQNDVPMLPLEPDIVSQLR 669
+ K+L S + P+ P+ P + +R
Sbjct: 401 RFSKLLEKVGS---------DSCPIYPIPPTSLDSIR 428
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 92.8 bits (229), Expect = 2e-18
Identities = 102/380 (26%), Positives = 161/380 (41%), Gaps = 87/380 (22%)
Query: 218 PEWSE-NMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIP 276
P +SE LS +++ L GF T +Q ++IP +++ A+TGSGKTLA+ +P
Sbjct: 15 PRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLP 74
Query: 277 IIEQLIKDTS----NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLS 332
IE + + S + +G+I +PTREL+ Q+ +K+ + L
Sbjct: 75 FIEIIRRSNSYPPKPHQVMGVIISPTRELSAQI-----------HKVARAVRLDFAKCRE 123
Query: 333 IQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDE 392
++ L+ +G+ +++ TPGR ++++R L F ++ L+LDEADRLL G +
Sbjct: 124 VEADMNTLEEEGA-NLLIGTPGRLSDMMKRMEFL--DFRNLEILILDEADRLLDMGFQKQ 180
Query: 393 FEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENN 452
I+ L K R+ T +FSAT L K +
Sbjct: 181 VNYIISRLPKQRR---------------TGLFSAT-QTQAVADLAKAGLR---------- 214
Query: 453 EMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKES-LIECLPMERDLYVYYFIMMYPG 511
NP K + K S L+ L ++ + F M
Sbjct: 215 ------------------------NPYLKCEADQKSSQLVHLLIENKNKKLVVFFMT--- 247
Query: 512 TTLVFCNAIDSVKKLNAFLNNLK-ISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPT 570
C +D + + + +LK IS F H M QK R L F E S
Sbjct: 248 -----CACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASS--------G 294
Query: 571 ILIASDVAARGLDISGIKHV 590
+L+ +DVAARGLDI GI ++
Sbjct: 295 VLLCTDVAARGLDIPGIVYI 314
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 90.9 bits (224), Expect = 7e-18
Identities = 67/209 (32%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK 283
+ LS +++ LG +PT +QL IP L+G + +G A TGSGKT A+ +PI+++L +
Sbjct: 7 LGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE 66
Query: 284 DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYD 343
D L+ TPTRELA+Q+ + + + + + + GG+ + Q L+
Sbjct: 67 DPYG--IFCLVLTPTRELAYQIAERFRVLGKPLGLKD----CIIVGGMDMVAQ--ALELS 118
Query: 344 GSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFD---EFEKILKLL 400
+++ATPGR + L + KI LV+DEADRLL+ G D + E IL +
Sbjct: 119 RKPHVVIATPGRLADHLRSSNTF--SIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAV 176
Query: 401 GKARKIKTSIDGKPTGSGWQTMIFSATFS 429
R QT++FSAT +
Sbjct: 177 PARR---------------QTLLFSATLT 190
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 89.4 bits (220), Expect = 2e-17
Identities = 102/406 (25%), Positives = 159/406 (39%), Gaps = 103/406 (25%)
Query: 231 LKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRS 290
LK + + F TEIQ K+I L+G +++ A TGS + + +K +R
Sbjct: 381 LKAIKEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGSVE--------LTVKLKFMPTNRP 432
Query: 291 IGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIV 350
I +PTRELA Q+ + N + +T + GG + + + K IIV
Sbjct: 433 GVFILSPTRELAMQI-------FGGANTHHMHTYGLIMGGDNTSAEAQ--KLANGINIIV 483
Query: 351 ATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSI 410
ATPG L+ ++ P + + + LV+DEADR+L G +E ++I+KLL R
Sbjct: 484 ATPGHLLDYMQNTPGFM--YKNLQYLVIDEADRILDVGFEEELKQIIKLLPTCR------ 535
Query: 411 DGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSK 470
TM+ SAT + ++E + +KK K++
Sbjct: 536 ---------HTMLLSAT----------------------QTRKVEDLARISLKKGAIKNR 564
Query: 471 PVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFL 530
+R + V++ M SVK L
Sbjct: 565 --------------------------KRKIMVFFSSSM-------------SVKYHYELL 585
Query: 531 NNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHV 590
N + + IH Q +F + IL+ DVAARGLDI + +
Sbjct: 586 NYMDLPILAIHGKQKQNKGTTTFFQFCKADS--------GILLCMDVAARGLDIPEVDWI 637
Query: 591 LHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRK 636
+ + YIHR RTARG N V++ E MG L L++
Sbjct: 638 VQHDPLDDPKEYIHRVSRTARGLNGRGHVLLILCPEEMGFLHYLKQ 683
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 89.4 bits (220), Expect = 2e-17
Identities = 105/458 (22%), Positives = 187/458 (39%), Gaps = 77/458 (16%)
Query: 210 DDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGK 269
D + + W E+ L +LKG+ +GF P+ IQ +I + G +I +A +G+GK
Sbjct: 30 DSSQIRMFDTW-EDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGK 88
Query: 270 TLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTG 329
T A+ + ++ I D S D + L+ TRE+A Q + + M + L+G
Sbjct: 89 TGAFAVAALQ--ICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGA----RVALLSG 142
Query: 330 GLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGH 389
G I + L + I+V TPGR ++ N I V+DEAD +L+ G
Sbjct: 143 GSPIAADKVAL--EKKPHIVVGTPGRVEHMININE---LSMDNIKLFVIDEADEMLKAGF 197
Query: 390 FDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGG 449
++ + I + + ++ Q +FSAT+ +
Sbjct: 198 QEQVKSIFRRITNKDEV-------------QIAMFSATYDEE------------------ 226
Query: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECL---PMER---DLYVY 503
E E++L PVIID + +++ I+ P + D +
Sbjct: 227 ELRVSEEIL----------INPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDYLLP 276
Query: 504 YFIMMYP-------GTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKF 556
+ +Y G ++VF N+ + + + +L + I + + Q R R L +F
Sbjct: 277 KLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECELISAELTQAERERTLNRF 336
Query: 557 KEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLP--RSADVYIHRSGRTARGDN 614
+ G LI+S + +RG+DI + V +P YIHR GR+ R
Sbjct: 337 RG--------GTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGR 388
Query: 615 EGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQ 652
+G+++ I E + L+ + + +T P +Q
Sbjct: 389 KGIAINIVYEHE-LKNLKAIERFYNTTIKELPADFSFQ 425
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 89.4 bits (220), Expect = 2e-17
Identities = 94/351 (26%), Positives = 156/351 (43%), Gaps = 51/351 (14%)
Query: 293 LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVAT 352
+I P+RELA Q + ++K ++ ++L L GG+ +++Q+ L I+V T
Sbjct: 290 IIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLL-LIGGVRLEEQKAQLMQ--GTHIVVGT 346
Query: 353 PGRFLELLERNPDLIP--RFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSI 410
PGR E++ L+ RF VLDEAD LL+ G+ + +++ K + K
Sbjct: 347 PGRLEEMINSGLVLLTHCRF-----FVLDEADALLKQGYTELIDRLHKQIPKITS----- 396
Query: 411 DGKPTGSGWQTMIFSATFSLDLFTKLDKT-----SWKILKTAGGENNEMEQVLNHLMKKI 465
G Q ++ SAT K+ + +W LK GE+ E V +H++ +
Sbjct: 397 ----DGRRLQMVVCSATLHAFEVKKMAERLMHFPTWVDLK---GEDAVPETV-HHVVCLV 448
Query: 466 Q------FKSKPVIIDTNPEHKVTS-----QVKESLIECLPMERDLYVYYFIMMYP-GTT 513
++S I T+ H + KE+L + + + + Y + I +
Sbjct: 449 DPQMDTTWQSLRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRA 508
Query: 514 LVFCNAIDSVKKLNAFLNNL---KISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPT 570
++FC L FL S +H + R NLE FK Q K
Sbjct: 509 IIFCRTKQDCDNLERFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVK-------- 560
Query: 571 ILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMI 621
LI +DVAARGLDI+G+ +++ LP Y+HR GR R + G+++ +
Sbjct: 561 FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 86.7 bits (213), Expect = 1e-16
Identities = 95/344 (27%), Positives = 151/344 (43%), Gaps = 65/344 (18%)
Query: 234 LSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIG- 292
L + RPT IQ S + G +++ A TGSGKTLA+ IP + +L+++ DR +
Sbjct: 714 LKRMKMNRPTPIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTD 773
Query: 293 -------LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILS---LTGGLSIQKQERILKY 342
LI PTREL +Q +T +L T L GG S + L+
Sbjct: 774 EKPSPRLLIVAPTRELVNQ-------TFTTARQLTYETGLKCGLAFGGYSRNANVQHLRS 826
Query: 343 DGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHF-DEFEKILKLLG 401
I+VAT GR + + +K+ +VLDEADR++ F +E KI+
Sbjct: 827 FSQLNILVATMGRLQDFVNAGE---VSLSKMKYIVLDEADRMVDSIDFGEEVSKII---- 879
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDL----FTKLDKTSWKILKT--AGGENNEME 455
G P QT++FSA+FS DL K K + +L+ G N +++
Sbjct: 880 ----------GSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKID 929
Query: 456 QVLNHL--MKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTT 513
Q + + +K K + ID N +L+ P+E+ T
Sbjct: 930 QKILPVPRTEKRDAIYKLLGIDEN---------TVTLLPDAPIEKQ------------KT 968
Query: 514 LVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFK 557
L+F N++ L A +++ +S+ +HS Q+ R R L+ F+
Sbjct: 969 LIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFR 1012
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 84.7 bits (208), Expect = 5e-16
Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 24/229 (10%)
Query: 186 TVVTEDQTNDD---LLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLK-GL------- 234
+V T D+ ++ + S++F +N DI + PV+ + E + S + GL
Sbjct: 185 SVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLIST 244
Query: 235 --SGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL----IKDTSND 288
+ L + T +Q +SIP+ L+G + + ++ TGSGKTLAY IP+++ L K +D
Sbjct: 245 INTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSD 304
Query: 289 RSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRI 348
L+ PTRELA Q D +Q K+ K + + + G +K E+ G I
Sbjct: 305 GPYALVLVPTRELALQSFDTVQ----KLLKPFTWIVPGVLMGGEKRKSEKARLRKGI-NI 359
Query: 349 IVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKIL 397
+++TPGR ++ ++ ++ F+++ LV DEADR+L G + IL
Sbjct: 360 LISTPGRLVDHIKSTKNI--HFSRLRWLVFDEADRILDLGFEKDITVIL 406
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 83.2 bits (204), Expect = 1e-15
Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 54/361 (14%)
Query: 293 LIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVAT 352
LI P+RELA Q +++ K + K K L + GG++ + Q +L + I+V T
Sbjct: 290 LIVEPSRELAEQTLNNI-KQFKKYIDNPKLRELLIIGGVAARDQLSVL--ENGVDIVVGT 346
Query: 353 PGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDG 412
PGR +L+ +++ LVLDEAD LL G+ D ++ + + DG
Sbjct: 347 PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS-----DG 398
Query: 413 KPTGSGWQTMIFSATF-SLDLFTKLDKT----SWKILKTAGGENNEMEQVLNHLMKKIQF 467
K Q ++ SAT S D+ +K +W LK GE++ + V +H++ +
Sbjct: 399 KRL----QVIVCSATLHSFDVKKLSEKIMHFPTWVDLK---GEDSVPDTV-HHVVVPVNP 450
Query: 468 KSKPVIIDTNPEHKVTSQVK------------ESLIECLPMERDLYVYYFIMMYP-GTTL 514
K+ + H T V E E + + + Y I + +
Sbjct: 451 KTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAI 510
Query: 515 VFCNAIDSVKKLNAFL---------NNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSK 565
+FC L + + S +H R +NLE+FK+
Sbjct: 511 IFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK------- 563
Query: 566 VGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQ 625
G LI +DVAARG+DI G+ +V++ LP Y+HR GR R + G+++ + + +
Sbjct: 564 -GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE 622
Query: 626 E 626
+
Sbjct: 623 K 623
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 81.6 bits (200), Expect = 4e-15
Identities = 115/508 (22%), Positives = 189/508 (36%), Gaps = 102/508 (20%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+++ LS V L GF RP+ Q IP L G +++ A TGSGKT Y PII+QL
Sbjct: 83 KSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQL 142
Query: 282 IKDTSND------------RSIGLIFTPTRELAHQVTDHLQKVWTKM-NKLNKYTILSLT 328
+ ++I LI P L QV + + + N L + + +
Sbjct: 143 TNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGS 202
Query: 329 GGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAK-IDTLVLDEADRLLQD 387
G D IIV+TP L +E + F + + +V DEAD LL
Sbjct: 203 QGWP----------DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCG 252
Query: 388 GHFDEFEKILKL---------------LGKARKIKTSID--------------------- 411
++ +++ + LG+ +I S+
Sbjct: 253 SFQNQIIRLINMLRFDEKQVSRLAKSNLGRPMEIDASVPQIDLENEDDAEFDEGSISEEE 312
Query: 412 ----------------------GKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGG 449
G T GW+ + T S KTAGG
Sbjct: 313 DEEEEEEYLDDIAQMPSVEAEAGSDTKKGWRRVRKIYTRSKQYIFIAATLPVNGKKTAGG 372
Query: 450 ENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMY 509
M Q + ++ P + E V SQV ++LIE + +
Sbjct: 373 ILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVTVDSQV-DALIEAVKNNNNTNTE------ 425
Query: 510 PGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKP 569
T+VF N +++V+ + L I ++ H + R L F+E
Sbjct: 426 --RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRETGG-------- 475
Query: 570 TILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEG--VSVMICSPQES 627
+ + +D AARG+D+ + HV+ SA ++HR GRTAR G S+ + ++
Sbjct: 476 -VFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRDL 534
Query: 628 MGPLRKLRKVLSTKKSSNPRKTKWQNDV 655
+ +R+ K+ +++ RK ++N V
Sbjct: 535 VEAIREAVKMGQPVETAFSRKRGFRNKV 562
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 80.5 bits (197), Expect = 9e-15
Identities = 97/402 (24%), Positives = 168/402 (41%), Gaps = 47/402 (11%)
Query: 279 EQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQER 338
EQL D+S + I PTREL Q ++Q + ++ K ++L G ++ + R
Sbjct: 297 EQLSIDSSTPLCV--ILEPTRELVQQTFQNIQTFASVLDS-PKIRCVTLAAGENMNQILR 353
Query: 339 ILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLL--QDGHFDEFEKI 396
L+ I+V TP R +L+ + +V+DE D+ L ++ + E I
Sbjct: 354 TLETGCD--IVVGTPSRVFDLIHTGKLATKN---LQFVVIDEIDQFLAGKNNCAHQIESI 408
Query: 397 LKLLGKARKIKTSIDGKPTGSGWQTMIFSAT---FSLDLFTK--LDKTSWKILKTAGGEN 451
++L + G+ Q + SAT F + F + W LK A +
Sbjct: 409 FRVLPLVAQ---------DGTRRQVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVS 459
Query: 452 NEMEQVLNHL-----MKKIQFKSKPVIIDTNPEH-----KVTSQVKESLIECLPMERDLY 501
++ V+ H+ + I+ + V ++ + H + + K+++ + + +Y
Sbjct: 460 ADVHHVVCHVDASEDKQWIRQMHQQVHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIY 519
Query: 502 VYYFI-MMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQS 560
V I + +VFC + FL +S+ +H + + R +LE FK+
Sbjct: 520 VVRAIHALQMDKAIVFCRTKQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEGFKK-- 577
Query: 561 EKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVM 620
G L+ SDV ARGLD+ G+ V+ LP +Y+HR GR R + G+S+
Sbjct: 578 ------GIIRFLVCSDVVARGLDVQGVPFVISVTLPDEKSMYVHRIGRVGRAERMGLSIS 631
Query: 621 ICSPQESMGPLRKLR----KVLSTKKSSNPRKTKWQNDVPML 658
+ S E K R +TK S T W + ML
Sbjct: 632 LVSEYEEKAWYHKCRSRGVNCTNTKDISKGGCTIWLQEKKML 673
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 77.4 bits (189), Expect = 8e-14
Identities = 68/257 (26%), Positives = 117/257 (45%), Gaps = 44/257 (17%)
Query: 197 LLQSNVFSSNVDIDDQEPPVLPEWS---------------------ENMDLSFTVLKGLS 235
+ + +V + +D D++E P P+ S + L +L+ +
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIV 60
Query: 236 GLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIF 295
GF P+E+Q + IP A+ G +++ +A +G GKT + + ++Q+ + N + L+
Sbjct: 61 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI--EPVNGQVTVLVM 118
Query: 296 TPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGR 355
TRELA Q++ ++ M + + GGLSI+K E +LK ++V TPGR
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVK---VSVFFGGLSIKKDEEVLK-KNCPHVVVGTPGR 174
Query: 356 FLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPT 415
L L+ RN + VLDE D++L+ L R ++ + T
Sbjct: 175 ILALV-RNRSF--SLKNVKHFVLDECDKMLEQ------------LDMRRDVQEIF--RLT 217
Query: 416 GSGWQTMIFSATFSLDL 432
Q M+FSAT S D+
Sbjct: 218 PHEKQCMMFSATLSKDI 234
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 76.3 bits (186), Expect = 2e-13
Identities = 62/224 (27%), Positives = 113/224 (49%), Gaps = 14/224 (6%)
Query: 186 TVVTEDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSG-LGFTRPTE 244
++ T ++ + +N+ NV I+ P+ + ++ +S ++ L + +PT
Sbjct: 110 SLFTSNREITTAVNTNIHDENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKMRIKKPTS 169
Query: 245 IQLKSIPLALKG---HNIMGKASTGSGKTLAYGIPIIEQLIK-DTSNDRSIG---LIFTP 297
IQ ++IP + ++ A TGSGKTL+Y +PII ++ DT DR+ G L+ P
Sbjct: 170 IQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAP 229
Query: 298 TRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFL 357
TRELA Q+ V + + Y + L G +K E+ G I+ TPGR L
Sbjct: 230 TRELASQI----YHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGC-NFIIGTPGRVL 284
Query: 358 ELLERNPDLIPRFAK-IDTLVLDEADRLLQDGHFDEFEKILKLL 400
+ L+ + + ++ + +VLDE D+L++ G + +I+K++
Sbjct: 285 DHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIV 328
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/89 (33%), Positives = 51/89 (56%), Gaps = 2/89 (2%)
Query: 538 FQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPR 597
+++H S++Q+ R L+ F +E GK I+ +DVA+RGLD+ + V+ P
Sbjct: 485 YKLHGSLSQQMRTSTLQHFARDNEATK--GKHLIMFCTDVASRGLDLPHVGSVIELDPPF 542
Query: 598 SADVYIHRSGRTARGDNEGVSVMICSPQE 626
+ + ++HR GRTAR +G S++ P E
Sbjct: 543 AVEDHLHRVGRTARAGEKGESLLFLLPGE 571
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 75.9 bits (185), Expect = 2e-13
Identities = 99/388 (25%), Positives = 154/388 (39%), Gaps = 111/388 (28%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
+ M L + +L+ + G PT IQ K+IPL L+ ++MG TGSGKTL Y IP I++
Sbjct: 13 KTMGLDYRLLRNILYEG---PTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAIQRA 69
Query: 282 IKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILK 341
I L+ PT+EL Q L+++ I++ ++++
Sbjct: 70 ISGEKT-----LVIVPTKELVIQARRVLKRL-----------------ARGIEEAWKLIE 107
Query: 342 YDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLG 401
+ TPG+ + D LV+DE DR+L++
Sbjct: 108 --------ICTPGKIEGM------------SADMLVVDEIDRILEE-------------- 133
Query: 402 KARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHL 461
+K+ D Q + FSAT + K++ E+E +N
Sbjct: 134 --PSLKSVFDRINESLSCQKVFFSATL------PDHPLNMKVV--------EIETRINET 177
Query: 462 MKKIQFKSKPVIIDTNPEHKVTSQVKE-SLIECLPMERDLYVYYFIMMYPGTTLVFCNAI 520
+K F + S+ KE +L+ L R T+VF
Sbjct: 178 VKHFFF-------------YIPSESKEAALLRILDKTR-------------KTIVFAATK 211
Query: 521 DSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAAR 580
+V+ L LN S I+SSM + R N F K +IL+ +DVAAR
Sbjct: 212 YAVELLLEILNKNNFESRGIYSSMDDEARRANFRDF--------NTSKFSILVVTDVAAR 263
Query: 581 GLDISGIKHVLHYHLPRSADVYIHRSGR 608
GLDI + V++Y L ++HR GR
Sbjct: 264 GLDIPYLDTVVNYDL-CDERTFLHRVGR 290
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 75.1 bits (183), Expect = 4e-13
Identities = 66/248 (26%), Positives = 101/248 (40%), Gaps = 54/248 (21%)
Query: 376 LVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTK 435
LVLDEADR+L G + +I++ + P+ T +FSATF ++
Sbjct: 14 LVLDEADRMLDMGFEPQIRQIVEC-----------NRMPSKEERITAMFSATFPKEI--- 59
Query: 436 LDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLP 495
L+ + K V + + + + ++
Sbjct: 60 ------------------------QLLAQDFLKENYVFLAVGRVGSTSENIMQKIVW--- 92
Query: 496 MERDLYVYYFIMMYPGT-----TLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRL 550
+E D Y + + T TLVF L +LN IH + Q R
Sbjct: 93 VEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFERE 152
Query: 551 RNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTA 610
++L+ F+ G IL+A+ VAARGLDI +KHV++Y LP D Y+HR GRT
Sbjct: 153 KHLDLFR--------TGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTG 204
Query: 611 RGDNEGVS 618
R N G++
Sbjct: 205 RVGNVGLA 212
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 72.8 bits (177), Expect = 2e-12
Identities = 89/423 (21%), Positives = 174/423 (41%), Gaps = 70/423 (16%)
Query: 224 MDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIK 283
M+L +L+G+ G GF +P+ IQ ++ G ++ ++ GSGKT+ I I++ +
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGI-- 58
Query: 284 DTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYD 343
D + ++ P R +A + + L+ + +N T L + + D
Sbjct: 59 DCEDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNV--NATCLGF---------DTTAEND 107
Query: 344 GSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKA 403
+++ TP FL + + I F VLDEAD +L G D+ ++ + + +
Sbjct: 108 KISHVLMGTPKDFLSNIPSDTSRIKMF------VLDEADEMLSKGFKDQIYEVFRSMPQ- 160
Query: 404 RKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMK 463
Q ++ SAT ++ LD T N M + L+K
Sbjct: 161 --------------DVQVVLLSATMPSEV---LDVT-----------NRFMRDPIRILVK 192
Query: 464 KIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSV 523
K + + ++ + + Q E CL DL L+FCN V
Sbjct: 193 KDE-----LTLEGIRQFYINVQKDEWKFNCL---CDL----LKTSRETQALIFCNTRRRV 240
Query: 524 KKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLD 583
+L L ++ I H +M R ++ F ++ + +L+ +D+ ARG++
Sbjct: 241 TQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTR--------VLVTTDLMARGMN 292
Query: 584 ISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKS 643
I +++Y + + + Y+ R+GR ++G+ + + + + L+K+ ST+
Sbjct: 293 IRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFT-ENDISDLKKIENHYSTRIE 350
Query: 644 SNP 646
P
Sbjct: 351 EMP 353
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 68.2 bits (165), Expect = 5e-11
Identities = 88/394 (22%), Positives = 159/394 (40%), Gaps = 63/394 (15%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
E + T+L+ L G+ PT IQ ++ +A +G NI+ + G+GKTL Y +P I ++
Sbjct: 35 ERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIMKM 94
Query: 282 IKDTS----NDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQE 337
I LI RE A V + +T +L + +L +
Sbjct: 95 HNQRGLMQHKKGPIVLILVDCREAAVMVQREV-LYYTNPLELRTHCLLGNS--------- 144
Query: 338 RILKYDGSGR--IIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDGHFDEFEK 395
++ G ++VA+ GR L++++ N + + LVLD DR++ G
Sbjct: 145 ---QWQGHAECDLLVASAGRLLQMID-NKKHVVELERCTYLVLDNIDRMIDVGLEG---N 197
Query: 396 ILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKILKTAGGENNEME 455
I +LL + R Q ++ S ++S +L +K + GE N +
Sbjct: 198 ICRLLCRLRPHA------------QLIVSSTSWSSNLKRMANKFLGQYTAIRVGEINNIG 245
Query: 456 QVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKESLIECLPMERDLYVYYFIMMYPGTTLV 515
L ++ ++++ N KV +KE L Y PG ++
Sbjct: 246 VRLQNIRQRVEV--------VNGLSKVERLMKE-----------LTAIYDTSDIPGKVVI 286
Query: 516 FCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIAS 575
+ V++L + N + IH + + F G I++A+
Sbjct: 287 YVKRQKVVEELVDLIRNC-VPCEGIHGGRTAQENQGIIHDF--------GTGAYNIIVAT 337
Query: 576 DVAARGLDISGIKHVLHYHLPRSADVYIHRSGRT 609
+ + LD+ GI++V++Y P + D Y+ R RT
Sbjct: 338 QMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRT 371
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 65.5 bits (158), Expect = 3e-10
Identities = 38/126 (30%), Positives = 72/126 (56%), Gaps = 7/126 (5%)
Query: 237 LGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFT 296
+G+ +P+ Q +SIP+AL G +I+ +A G+GK+ A+ IP++++L D D ++
Sbjct: 67 MGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRL--DLKKDTIQTIVIV 124
Query: 297 PTRELAHQVTDHLQKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRF 356
PT A QV+ +V M + ++ TGG + + +L+ D + +++A PGR
Sbjct: 125 PTGGPALQVSQICIQVSKHMGGVK---VVMTTGGTN--SGDDVLRLDDTVHMVIAAPGRI 179
Query: 357 LELLER 362
L L+++
Sbjct: 180 LNLIKK 185
>YMR190c [L] KOG0351 ATP-dependent DNA helicase
Length = 1447
Score = 62.4 bits (150), Expect = 3e-09
Identities = 98/503 (19%), Positives = 189/503 (37%), Gaps = 68/503 (13%)
Query: 190 EDQTNDDLLQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKS 249
ED +DD S++ S + P P WS+ + + L G RP QL++
Sbjct: 633 EDDFDDDFSLSDIVSKSNLSSKTNGPTYP-WSDEVLYRLHEVFKLPGF---RPN--QLEA 686
Query: 250 IPLALKGHNIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHL 309
+ L+G ++ TG GK+L Y +P + + + ++ +P L +HL
Sbjct: 687 VNATLQGKDVFVLMPTGGGKSLCYQLPAVVK----SGKTHGTTIVISPLISLMQDQVEHL 742
Query: 310 QKVWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPR 369
+NK K ++ S G ++Q L +G L+L+ +P++I
Sbjct: 743 ------LNKNIKASMFSSRGTAEQRRQTFNLFING-----------LLDLVYISPEMISA 785
Query: 370 FAKIDTLVLDEADRLLQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFS 429
+ + RL DG K+ +++ +D S W
Sbjct: 786 SEQCKRAI----SRLYADG------KLARIV---------VDEAHCVSNWGHDFRPDYKE 826
Query: 430 LDLFTKLDKTSWKILKTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEHKVTSQVKES 489
L F + I TA ++++L K K TN ++V + K +
Sbjct: 827 LKFFKREYPDIPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNT 886
Query: 490 LIECLPMERDLYVYYFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNR 549
+ E + + T +++C++ S ++ +A + I H+ M R
Sbjct: 887 IFEICDAVKSRFKNQ-------TGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDER 939
Query: 550 LRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRT 609
L +K + + ++ A+ G+D ++ V H+ +PR+ + Y +GR
Sbjct: 940 L--------SVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRA 991
Query: 610 ARGDNEGVSVMICSPQESMGPLRKLRKVLSTKKS-SNPRKTKWQNDVPMLPLEPDIVSQL 668
R N C S +R ++ ++ K+ K K N + + D V+
Sbjct: 992 GRDGN----YSYCITYFSFRDIRTMQTMIQKDKNLDRENKEKHLNKLQQVMAYCDNVTDC 1047
Query: 669 RERSKIASELADDEIATKSLHKD 691
R K+ +++ +K HK+
Sbjct: 1048 RR--KLVLSYFNEDFDSKLCHKN 1068
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 60.5 bits (145), Expect = 1e-08
Identities = 37/101 (36%), Positives = 54/101 (52%), Gaps = 6/101 (5%)
Query: 549 RLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGR 608
++R +E + E K + V L ASDVAARGLD + L + P A+ YIHR+GR
Sbjct: 218 QMRRMEVYNEFVRKRAAV-----LFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGR 272
Query: 609 TARGDNEGVSVMICSPQESMGPLRKLRKVLSTKK-SSNPRK 648
TAR +G +++I E + L+K + K+ NP K
Sbjct: 273 TARYKEDGEALLILLASEKAIVQQLLQKKVPIKEIKINPEK 313
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 59.3 bits (142), Expect = 2e-08
Identities = 42/157 (26%), Positives = 78/157 (48%), Gaps = 20/157 (12%)
Query: 482 VTSQVKESLIECLPMERDLYVYYFIMMY--PGTTLVFCNAIDSVKKLNAFLNNLKISSFQ 539
V S + ++ + C ++ L + + MY G+++VF +D +K + ++ L + +
Sbjct: 220 VCSDITQNAVICAEHQKFLKLLELLGMYYDEGSSIVF---VDKQEKADDIVDQLMRTGYN 276
Query: 540 ----IHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHL 595
+H + Q +R ++ FK G +L+A+ VAARGLD+ + V++Y
Sbjct: 277 SVASLHGGIDQHDRDSSIADFK--------TGVIKVLVATSVAARGLDVKNLILVVNYDC 328
Query: 596 PRSADVYIHRSGRTARG---DNEGVSVMICSPQESMG 629
P + Y+HR GRT R D E ++ +C E+ G
Sbjct: 329 PNHYEDYVHRVGRTGRAGRKDQEKMAGEVCRAFETAG 365
Score = 55.1 bits (131), Expect = 4e-07
Identities = 38/104 (36%), Positives = 52/104 (49%), Gaps = 12/104 (11%)
Query: 288 DRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTILSLT---GGLSIQKQERILKYDG 344
D I +I TPTRELA Q + + NK K L + GG+ I +Q LK
Sbjct: 115 DGPIAVILTPTRELAMQT-------YKEANKFAKPLGLKVACTYGGVGISEQIADLKR-- 165
Query: 345 SGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRLLQDG 388
I+V TPGR +++L N + ++ LVLDEADR+ G
Sbjct: 166 GAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKG 209
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 57.4 bits (137), Expect = 9e-08
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 515 VFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPTILIA 574
+F N L L + ++ +H Q+ R E + N K G +L+
Sbjct: 494 IFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQR--------EFALSNLKPGAKDVLVT 545
Query: 575 SDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESMGPLRKL 634
+DVA G+DI + V++Y + ++ D YIHR GR + GV++ + ++S
Sbjct: 546 TDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGVAITFLTKEDSAVFYELK 605
Query: 635 RKVLSTKKSSNPRK 648
+ +L + SS P K
Sbjct: 606 QAILESPVSSCPPK 619
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 57.0 bits (136), Expect = 1e-07
Identities = 27/84 (32%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 222 ENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGKTLAYGIPIIEQL 281
++M+LS ++L+G+ G +P+ IQ ++I +KG++++ +A +G+GK + I I++Q+
Sbjct: 19 DDMNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGKMATFAILILQQI 78
Query: 282 IKDTSNDRSIGLIFTPTRELAHQV 305
D ++ L+ PT+ELA Q+
Sbjct: 79 ELDLKATQA--LLLAPTQELAQQI 100
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 53.1 bits (126), Expect = 2e-06
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 16/110 (14%)
Query: 210 DDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGSGK 269
DD P+ ++ L + + + G+ RPT +Q SIP G ++M A TGSGK
Sbjct: 356 DDVPQPI--SLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGK 413
Query: 270 TLAYGIPIIEQLIKDTSN--DRSI------------GLIFTPTRELAHQV 305
T A+ +P++ +++D + RS+ L+ +PTREL+ QV
Sbjct: 414 TAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 52.4 bits (124), Expect = 3e-06
Identities = 58/209 (27%), Positives = 92/209 (43%), Gaps = 36/209 (17%)
Query: 208 DIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKASTGS 267
++D + P+L SF LK + + F P Q IP LK N++ +A TGS
Sbjct: 24 NVDGERHPLL--------CSFEDLK--TKVPFDSPLLTQKVVIPYFLKKTNVIVQAFTGS 73
Query: 268 GKTLAYGIPIIEQLIKDTSNDRSI-GLIFTPTRELAHQV--------TDHLQKVWTKMNK 318
GKTL+Y +P++E + RS+ G I P + L QV + L+ V +
Sbjct: 74 GKTLSYCLPLVEM-----ARGRSLFGAILVPGKPLVRQVYRVVREIKHEGLKVVGVYGDG 128
Query: 319 LNKYTILSLTGGLSIQK------QERILK-YDGSGRIIVATPGRFLELLERNPDLIPRFA 371
+ + G +QK +ERI + S R+++ TP L L+ +
Sbjct: 129 REDFLVEEGEKGELVQKAIDDKMRERIAESLRASARVLIGTPRSVLGLMS-----MSEIR 183
Query: 372 KIDTLVLDEADRLLQDGHFDEFEKILKLL 400
+ LV+DEAD L+ F IL ++
Sbjct: 184 NVTHLVIDEADLLINPETVGVFASILSVI 212
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 52.0 bits (123), Expect = 4e-06
Identities = 45/151 (29%), Positives = 66/151 (42%), Gaps = 23/151 (15%)
Query: 263 ASTGSGKTLAYGIPIIEQLIKDTSNDRSI-----------GLIFTPTRELAHQVTDHLQK 311
A TGSGKT+AY IP+I+ L + + +I PT EL QV + + K
Sbjct: 164 AETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHELVDQVYETVSK 223
Query: 312 VWTKMNKLNKYTILSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLE----RNPDLI 367
T + LN + T ++ + I+V TPG+ L L PD +
Sbjct: 224 TKTLLG-LNSFKWDKAT-----SYRDLLENIKNRIDILVTTPGKLLNLFSIRMITRPDKV 277
Query: 368 PRFAKIDTLVLDEADRLLQDGHFDEFEKILK 398
+K+ +VLDEAD LL +E +K
Sbjct: 278 --LSKVGFVVLDEADTLLDRSWLEETHSAIK 306
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 51.6 bits (122), Expect = 5e-06
Identities = 35/118 (29%), Positives = 59/118 (49%), Gaps = 9/118 (7%)
Query: 511 GTTLVFCNAIDSVKKLNAFLNNLKISSFQIHSSMAQKNRLRNLEKFKEQSEKNSKVGKPT 570
G ++FC +V ++ A ++K ++ +H +AQ R L+ F+E S K
Sbjct: 567 GRAIIFCETRKNVTEM-AMNPHIKQNAQCLHGDIAQSQREITLKGFREDSFK-------- 617
Query: 571 ILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTARGDNEGVSVMICSPQESM 628
+L+A++VAA L I + V+ + P+ + IHRSG T R V V I +E +
Sbjct: 618 VLVATNVAAHSLHIPEVDLVIQHSPPQDVEARIHRSGCTGRAGQGFVYVFINQEKEEI 675
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,347,565
Number of Sequences: 60738
Number of extensions: 1729515
Number of successful extensions: 5447
Number of sequences better than 1.0e-05: 231
Number of HSP's better than 0.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 4405
Number of HSP's gapped (non-prelim): 438
length of query: 796
length of database: 30,389,216
effective HSP length: 114
effective length of query: 682
effective length of database: 23,465,084
effective search space: 16003187288
effective search space used: 16003187288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)