ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII2753  suspect: LH   J     KOG3311  Translation, ribosomal structure and biogenesis                Ribosomal protein S18

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII2753 971068  971478 137  
         (137 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNL081c [J] KOG3311 Ribosomal protein S18                             185   1e-47
SPCC1795.07 [J] KOG3311 Ribosomal protein S18                         102   2e-22

>YNL081c [J] KOG3311 Ribosomal protein S18
          Length = 143

 Score =  185 bits (470), Expect = 1e-47
 Identities = 91/130 (70%), Positives = 102/130 (78%)

Query: 1   MVVHXXXXXXXXXXXXXXXLASKFYGIGLKTAEKICSKLGFYPWMRMHQLTEPQVMAITS 60
           MVVH               LASKFYGIG  TAEKICSKLGFYPWMRMHQL+EPQ+M+I S
Sbjct: 1   MVVHILGKGFKGKEVIKIALASKFYGIGKTTAEKICSKLGFYPWMRMHQLSEPQIMSIAS 60

Query: 61  ELANMTIEGDARAIVKENIALKRSIGSYEGMRHALGLPVRGQRTRNNAKVARRLNKVDRR 120
           EL+ MTIEGDARAIVK+NIALKR IGSY GMRH L LPVRGQ TRNNAK AR+LNK+DRR
Sbjct: 61  ELSTMTIEGDARAIVKDNIALKRKIGSYSGMRHTLHLPVRGQHTRNNAKTARKLNKIDRR 120

Query: 121 GYHTQTRSPI 130
           G HT +++ +
Sbjct: 121 GIHTFSQAKV 130


>SPCC1795.07 [J] KOG3311 Ribosomal protein S18
          Length = 151

 Score =  102 bits (253), Expect = 2e-22
 Identities = 52/101 (51%), Positives = 67/101 (65%)

Query: 24  FYGIGLKTAEKICSKLGFYPWMRMHQLTEPQVMAITSELANMTIEGDARAIVKENIALKR 83
           FYGIG   AE+IC+KL F+  +R+ +LT  Q+  ++  L+ MTIEGD R     +I+   
Sbjct: 22  FYGIGHAKAEEICAKLSFHNTLRVRELTNVQLTTLSQLLSGMTIEGDLRRQRNADISRLV 81

Query: 84  SIGSYEGMRHALGLPVRGQRTRNNAKVARRLNKVDRRGYHT 124
           +I  Y GMRH  GLPV GQ TR NAK A++LNKV RRGY T
Sbjct: 82  NIRCYRGMRHVNGLPVNGQNTRTNAKTAKKLNKVPRRGYMT 122


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,236,380
Number of Sequences: 60738
Number of extensions: 200584
Number of successful extensions: 469
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 2
length of query: 137
length of database: 30,389,216
effective HSP length: 95
effective length of query: 42
effective length of database: 24,619,106
effective search space: 1034002452
effective search space used: 1034002452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)