ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII2802  suspect: LH   R     KOG3780  General function prediction only                               Thioredoxin binding protein TBP-2/VDUP1

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII2802 989264 987549 -572 
         (572 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs20543322 [R] KOG3780 Thioredoxin binding protein TBP-2/VDUP1         59   3e-08

>Hs20543322 [R] KOG3780 Thioredoxin binding protein TBP-2/VDUP1
          Length = 414

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 44  MKSYILEFEIVLDDVHRVWKPNETISGTVKLRLRKDVPNVWIKLAHIGEFQLHSNNPMTA 103
           +KS  + F+ + D    V+   +T+SG V L +  ++    +K+   G  ++       A
Sbjct: 6   VKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRNA 65

Query: 104 GS---LKSKYSDTV--FCRSTSIYG-------SEENPLHLTGGEHKFPFSCKINGKNLVS 151
           GS       Y++ V  F     + G       SEE    +  G H++ FS ++    L +
Sbjct: 66  GSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIHSGRHEYAFSFELPQTPLAT 125

Query: 152 SIDFKKGSIRYWVQAELHAQKTPPIFCKQHYQLIVPIDV 190
           S + + GS+RYWV+AELH     P+  K+ + +   ID+
Sbjct: 126 SFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDI 164


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,280,641
Number of Sequences: 60738
Number of extensions: 1511345
Number of successful extensions: 3327
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3326
Number of HSP's gapped (non-prelim): 1
length of query: 572
length of database: 30,389,216
effective HSP length: 112
effective length of query: 460
effective length of database: 23,586,560
effective search space: 10849817600
effective search space used: 10849817600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)