ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2815 check: MH K KOG4210 Transcription Nuclear localization sequence binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2815 992169 990835 -445
(445 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 326 4e-89
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 181 1e-45
At4g24770 [R] KOG0118 FOG: RRM domain 103 4e-22
At5g50250 [R] KOG0118 FOG: RRM domain 101 2e-21
At2g37220 [R] KOG0118 FOG: RRM domain 96 8e-20
At2g18510 [A] KOG0131 Splicing factor 3b subunit 4 93 7e-19
Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 92 1e-18
CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 91 3e-18
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 90 8e-18
At5g54900 [R] KOG0118 FOG: RRM domain 89 1e-17
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 89 1e-17
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 89 1e-17
At1g47490 [R] KOG0118 FOG: RRM domain 89 1e-17
At4g27000 [R] KOG0118 FOG: RRM domain 89 2e-17
7290689 [A] KOG0131 Splicing factor 3b subunit 4 88 2e-17
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 87 5e-17
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 87 5e-17
At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 87 5e-17
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 87 7e-17
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 86 9e-17
Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 86 9e-17
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 86 1e-16
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 86 1e-16
At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 86 1e-16
At1g47500 [R] KOG0118 FOG: RRM domain 85 2e-16
Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 85 2e-16
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 85 2e-16
CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 85 2e-16
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 85 2e-16
Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 84 4e-16
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 84 6e-16
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 84 6e-16
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 83 7e-16
At1g54080 [R] KOG0118 FOG: RRM domain 83 7e-16
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 83 9e-16
At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 83 9e-16
At3g52380 [R] KOG0118 FOG: RRM domain 83 9e-16
At3g19130 [R] KOG0118 FOG: RRM domain 83 9e-16
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 83 9e-16
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 82 1e-15
7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 82 1e-15
At5g19350 [R] KOG0118 FOG: RRM domain 82 2e-15
At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 82 2e-15
At1g49600 [R] KOG0118 FOG: RRM domain 82 2e-15
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 81 3e-15
At3g14100 [R] KOG0118 FOG: RRM domain 81 3e-15
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 81 3e-15
At1g11650 [R] KOG0118 FOG: RRM domain 81 4e-15
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 80 5e-15
At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 80 8e-15
7294907 [R] KOG0110 RNA-binding protein (RRM superfamily) 79 1e-14
YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily) 79 2e-14
SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily) 79 2e-14
Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily) 79 2e-14
Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily) 79 2e-14
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 79 2e-14
At4g13850 [R] KOG0118 FOG: RRM domain 78 2e-14
CE29337 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 78 3e-14
YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 77 4e-14
Hs4758542 [R] KOG0118 FOG: RRM domain 77 4e-14
Hs14110404 [R] KOG0118 FOG: RRM domain 77 4e-14
At3g23830 [R] KOG0118 FOG: RRM domain 77 4e-14
At1g17370 [R] KOG0118 FOG: RRM domain 77 4e-14
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 77 5e-14
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 77 5e-14
At1g48920 [K] KOG4210 Nuclear localization sequence binding protein 77 5e-14
SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 76 9e-14
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 75 2e-13
At3g18610 [K] KOG4210 Nuclear localization sequence binding protein 75 2e-13
At1g17640 [R] KOG0118 FOG: RRM domain 75 2e-13
Hs4885423 [R] KOG0118 FOG: RRM domain 75 3e-13
At3g08000 [R] KOG0118 FOG: RRM domain 75 3e-13
At2g41060 [R] KOG0118 FOG: RRM domain 75 3e-13
7301687 [R] KOG0118 FOG: RRM domain 75 3e-13
7301686 [R] KOG0118 FOG: RRM domain 75 3e-13
Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 74 3e-13
Hs20373175 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 74 3e-13
At4g39260 [R] KOG0118 FOG: RRM domain 74 4e-13
Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 74 6e-13
YNL016w [R] KOG0118 FOG: RRM domain 73 7e-13
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 73 7e-13
Hs14110420 [R] KOG0118 FOG: RRM domain 73 7e-13
Hs14110417 [R] KOG0118 FOG: RRM domain 73 7e-13
Hs14110414 [R] KOG0118 FOG: RRM domain 73 7e-13
At2g21660 [R] KOG0118 FOG: RRM domain 73 1e-12
At3g26420 [R] KOG0118 FOG: RRM domain 72 1e-12
Hs7661952 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 72 2e-12
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 72 2e-12
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 72 2e-12
CE17059 [R] KOG0118 FOG: RRM domain 71 3e-12
At5g41690 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 71 3e-12
At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 71 3e-12
ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 71 4e-12
At3g53460 [R] KOG0118 FOG: RRM domain 71 4e-12
At1g34140 [R] KOG0118 FOG: RRM domain 71 4e-12
7299788 [R] KOG0118 FOG: RRM domain 70 5e-12
At3g56860 [R] KOG0118 FOG: RRM domain 70 6e-12
At3g52150 [R] KOG0118 FOG: RRM domain 70 6e-12
SPAC17A2.09c [R] KOG0118 FOG: RRM domain 70 8e-12
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 70 8e-12
At1g01080 [R] KOG0118 FOG: RRM domain 70 8e-12
SPAC328.05 [R] KOG0118 FOG: RRM domain 69 1e-11
At1g60000 [R] KOG0118 FOG: RRM domain 69 1e-11
At5g61030 [R] KOG0118 FOG: RRM domain 69 1e-11
SPAC3G6.04 [K] KOG4210 Nuclear localization sequence binding pro... 69 2e-11
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 68 3e-11
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 68 3e-11
7290796 [R] KOG0118 FOG: RRM domain 67 4e-11
SPBC23E6.01c [R] KOG0118 FOG: RRM domain 67 5e-11
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 67 7e-11
Hs8923460 [R] KOG0118 FOG: RRM domain 67 7e-11
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 67 7e-11
At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 66 9e-11
At2g14550 [A] KOG0131 Splicing factor 3b subunit 4 66 9e-11
7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 66 9e-11
Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 66 1e-10
At5g04280 [R] KOG0118 FOG: RRM domain 66 1e-10
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 66 1e-10
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 65 2e-10
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 65 2e-10
At1g58470 [R] KOG0118 FOG: RRM domain 65 2e-10
7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 65 2e-10
CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily) 65 2e-10
7291545 [A] KOG0120 Splicing factor U2AF large subunit (RRM supe... 65 2e-10
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 65 3e-10
At2g16940 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 65 3e-10
7301511 [R] KOG0118 FOG: RRM domain 65 3e-10
CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 64 3e-10
CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 64 3e-10
At5g06210 [R] KOG0118 FOG: RRM domain 64 3e-10
SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM... 64 5e-10
Hs4502847 [R] KOG0118 FOG: RRM domain 64 5e-10
At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 64 5e-10
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 64 6e-10
At4g14300 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 64 6e-10
At5g07290 [D] KOG4660 Protein Mei2 essential for commitment to m... 63 8e-10
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 63 1e-09
7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 63 1e-09
At5g40490 [R] KOG0118 FOG: RRM domain 62 1e-09
Hs5803137 [R] KOG0118 FOG: RRM domain 62 2e-09
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 62 2e-09
Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 62 2e-09
7290149 [R] KOG0118 FOG: RRM domain 62 2e-09
SPBC18H10.04c [R] KOG0118 FOG: RRM domain 62 2e-09
Hs4504447 [R] KOG0118 FOG: RRM domain 62 2e-09
Hs4504445 [R] KOG0118 FOG: RRM domain 62 2e-09
Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 62 2e-09
Hs14790190 [R] KOG0112 Large RNA-binding protein (RRM superfamily) 62 2e-09
Hs14043072 [R] KOG0118 FOG: RRM domain 62 2e-09
Hs14043070 [R] KOG0118 FOG: RRM domain 62 2e-09
Hs13650572 [R] KOG0118 FOG: RRM domain 62 2e-09
CE29317 [R] KOG0118 FOG: RRM domain 62 2e-09
At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protei... 61 3e-09
YNL175c [K] KOG4210 Nuclear localization sequence binding protein 61 4e-09
Hs5031693 [R] KOG0118 FOG: RRM domain 61 4e-09
Hs13654587 [R] KOG0118 FOG: RRM domain 61 4e-09
At4g25500 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 61 4e-09
At2g42890 [D] KOG4660 Protein Mei2 essential for commitment to m... 61 4e-09
At2g35410 [R] KOG0118 FOG: RRM domain 61 4e-09
Hs22042102 [R] KOG0118 FOG: RRM domain 60 5e-09
At5g64200 [A] KOG4207 Predicted splicing factor SR protein super... 60 5e-09
At2g16260 [R] KOG0118 FOG: RRM domain 60 5e-09
At1g76460 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 60 5e-09
7291799 [R] KOG0118 FOG: RRM domain 60 5e-09
At5g54580 [R] KOG0118 FOG: RRM domain 60 7e-09
YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 60 9e-09
At5g44200 [A] KOG0121 Nuclear cap-binding protein complex subuni... 60 9e-09
At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 60 9e-09
At1g74230 [R] KOG0118 FOG: RRM domain 60 9e-09
At1g18630 [R] KOG0118 FOG: RRM domain 60 9e-09
Hs20127499 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 59 1e-08
At3g61860 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 59 1e-08
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 59 1e-08
Hs22058383 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 59 1e-08
At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 59 1e-08
7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 59 1e-08
7295256 [AR] KOG0109 RNA-binding protein LARK contains RRM and r... 59 1e-08
Hs13899354 [AR] KOG0109 RNA-binding protein LARK contains RRM an... 59 2e-08
At1g22330 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 59 2e-08
At1g20880 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 59 2e-08
Hs5730079 [R] KOG0118 FOG: RRM domain 58 2e-08
Hs4506445 [AR] KOG0109 RNA-binding protein LARK contains RRM and... 58 2e-08
Hs22059019 [R] KOG0118 FOG: RRM domain 58 2e-08
Hs16905517 [R] KOG0118 FOG: RRM domain 58 2e-08
7300034 [R] KOG0118 FOG: RRM domain 58 2e-08
ECU08g0380 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 58 3e-08
7301350 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 58 3e-08
Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 57 4e-08
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 57 4e-08
At5g52040 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 57 4e-08
At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 57 4e-08
At1g78260 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 57 4e-08
At1g73530 [R] KOG0118 FOG: RRM domain 57 4e-08
7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 57 4e-08
YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 57 6e-08
Hs4506449 [R] KOG4733 FOG: RRM domain 57 6e-08
Hs22049560 [R] KOG0118 FOG: RRM domain 57 6e-08
CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 57 6e-08
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 57 6e-08
At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 57 6e-08
At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 57 6e-08
At1g22910 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 57 7e-08
HsM5032089 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 56 9e-08
HsM18152777 [R] KOG0118 FOG: RRM domain 56 9e-08
Hs21361282 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 56 9e-08
At1g33470 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 56 9e-08
CE13934 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM supe... 56 1e-07
At4g19610 [R] KOG0110 RNA-binding protein (RRM superfamily) 56 1e-07
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 56 1e-07
SPAC16E8.06c [R] KOG0118 FOG: RRM domain 55 2e-07
At2g21440 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 55 2e-07
Hs5803036 [R] KOG0118 FOG: RRM domain 55 2e-07
Hs20560400 [A] KOG4207 Predicted splicing factor SR protein supe... 55 2e-07
Hs7706326 [R] KOG0114 Predicted RNA-binding protein (RRM superfa... 55 3e-07
Hs4759098 [R] KOG0118 FOG: RRM domain 55 3e-07
Hs15055543 [A] KOG4207 Predicted splicing factor SR protein supe... 55 3e-07
CE05167 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily) 55 3e-07
7291222 [R] KOG0151 Predicted splicing regulator contains RRM SW... 55 3e-07
YBR212w [R] KOG0118 FOG: RRM domain 54 4e-07
HsM13236563 [R] KOG0226 RNA-binding proteins 54 4e-07
Hs7657506 [R] KOG4733 FOG: RRM domain 54 4e-07
Hs21359951 [R] KOG0226 RNA-binding proteins 54 4e-07
CE09667 [A] KOG0121 Nuclear cap-binding protein complex subunit ... 54 4e-07
At3g06970 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 54 4e-07
7299787 [R] KOG0118 FOG: RRM domain 54 4e-07
SPBC29A3.07c [R] KOG0114 Predicted RNA-binding protein (RRM supe... 54 5e-07
Hs9558733 [R] KOG0118 FOG: RRM domain 54 5e-07
Hs8400724 [R] KOG4733 FOG: RRM domain 54 5e-07
Hs8400722 [R] KOG4733 FOG: RRM domain 54 5e-07
Hs8400720 [R] KOG4733 FOG: RRM domain 54 5e-07
Hs8400718 [R] KOG4733 FOG: RRM domain 54 5e-07
Hs4506447 [R] KOG4733 FOG: RRM domain 54 5e-07
CE29126 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 54 5e-07
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 54 5e-07
At4g09040 [R] KOG0118 FOG: RRM domain 54 5e-07
At3g15010 [R] KOG0118 FOG: RRM domain 54 5e-07
At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein 54 5e-07
At3g20930_2 [R] KOG0118 FOG: RRM domain 54 5e-07
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 54 6e-07
Hs21361783 [R] KOG0118 FOG: RRM domain 54 6e-07
Hs16519537 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 54 6e-07
ECU07g0340 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 54 6e-07
CE27875 [R] KOG0114 Predicted RNA-binding protein (RRM superfamily) 54 6e-07
CE25017 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 54 6e-07
At1g29400 [D] KOG4660 Protein Mei2 essential for commitment to m... 54 6e-07
YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 53 8e-07
Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 53 8e-07
Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM s... 53 8e-07
Hs14192947 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM s... 53 8e-07
CE24459 [R] KOG0226 RNA-binding proteins 53 8e-07
CE11598 [R] KOG0118 FOG: RRM domain 53 8e-07
7294455 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 53 8e-07
7293214 [A] KOG0120 Splicing factor U2AF large subunit (RRM supe... 53 8e-07
Hs6005725 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 53 1e-06
Hs22049772 [R] KOG0118 FOG: RRM domain 53 1e-06
At5g19030 [R] KOG0118 FOG: RRM domain 53 1e-06
7298863 [A] KOG0533 RRM motif-containing protein 53 1e-06
7295357 [R] KOG0114 Predicted RNA-binding protein (RRM superfamily) 53 1e-06
Hs4503533 [R] KOG0118 FOG: RRM domain 52 1e-06
Hs22057414 [R] KOG0118 FOG: RRM domain 52 1e-06
Hs20535199 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 52 1e-06
At2g46610 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp7... 52 1e-06
At2g37510 [R] KOG0118 FOG: RRM domain 52 1e-06
At1g16610 [R] KOG0118 FOG: RRM domain 52 1e-06
YOR319w [A] KOG0131 Splicing factor 3b subunit 4 52 2e-06
At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 52 2e-06
At5g53720 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 52 2e-06
At3g50670 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 52 2e-06
7296727 [R] KOG0226 RNA-binding proteins 52 2e-06
YNL004w [R] KOG0118 FOG: RRM domain 51 3e-06
SPAC644.16 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 51 3e-06
SPAC16.02c [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 51 3e-06
Hs5174637 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans... 51 3e-06
Hs19923387 [A] KOG0121 Nuclear cap-binding protein complex subun... 51 3e-06
At5g19960 [R] KOG0118 FOG: RRM domain 51 3e-06
At5g12190 [R] KOG0114 Predicted RNA-binding protein (RRM superfa... 51 3e-06
At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 51 3e-06
7291035 [R] KOG0118 FOG: RRM domain 51 3e-06
SPAC22E12.02 [R] KOG0226 RNA-binding proteins 51 4e-06
Hs6005926 [A] KOG0120 Splicing factor U2AF large subunit (RRM su... 51 4e-06
CE25105 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 51 4e-06
CE18515 [R] KOG0118 FOG: RRM domain 51 4e-06
Hs5729816 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 50 5e-06
Hs5729794 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 50 5e-06
Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 50 5e-06
Hs4826972 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM supe... 50 5e-06
CE27910 [A] KOG4207 Predicted splicing factor SR protein superfa... 50 5e-06
CE18909 [R] KOG4733 FOG: RRM domain 50 5e-06
CE18908 [R] KOG4733 FOG: RRM domain 50 5e-06
CE01891 [A] KOG4207 Predicted splicing factor SR protein superfa... 50 5e-06
At5g51300 [A] KOG0119 Splicing factor 1/branch point binding pro... 50 5e-06
At3g54770 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 50 5e-06
At2g21690 [R] KOG0118 FOG: RRM domain 50 5e-06
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 50 7e-06
YOL041c [R] KOG0118 FOG: RRM domain 50 9e-06
YGR250c [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 50 9e-06
Hs8922073 [R] KOG0125 Ataxin 2-binding protein (RRM superfamily) 50 9e-06
Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 50 9e-06
Hs22063425 [A] KOG4207 Predicted splicing factor SR protein supe... 50 9e-06
ECU02g0530 [R] KOG0114 Predicted RNA-binding protein (RRM superf... 50 9e-06
CE18105 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM sup... 50 9e-06
At1g13690 [O] KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans... 50 9e-06
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 326 bits (836), Expect = 4e-89
Identities = 168/258 (65%), Positives = 186/258 (71%), Gaps = 3/258 (1%)
Query: 188 KTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDK 247
K E EPATIFVGRLSWSIDDEWLK EFE IGGVI ARV+YERGTDRSRGYGYVDFE+K
Sbjct: 160 KNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENK 219
Query: 248 SYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFE 307
SYAEKAI+EM GKEIDGRPINCDMSTSKPAG +DRAKKFGD PSEPSDTLFLGNLSF
Sbjct: 220 SYAEKAIQEMQGKEIDGRPINCDMSTSKPAG--NNDRAKKFGDTPSEPSDTLFLGNLSFN 277
Query: 308 ADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
ADRD ++E+F K+GE+VSVRIPTHPETEQPKGFGYVQ+ ++EDA KA + LQGEYI+NRP
Sbjct: 278 ADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRP 337
Query: 368 VRLDYSIPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASP 427
VRLD+S P+ A P
Sbjct: 338 VRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGNRGFGGRGGARGGRGGFRPSGSGANTA-P 396
Query: 428 LGATRQTASFQGTKKTFD 445
LG +R TASF G+KKTFD
Sbjct: 397 LGRSRNTASFAGSKKTFD 414
Score = 56.6 bits (135), Expect = 7e-08
Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 245 EDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRA--KKFGDVPSEPSDTLFLG 302
++ S ++ + E + N S+ A D+ + KK + +E T+F+G
Sbjct: 114 KESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVG 173
Query: 303 NLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEY 362
LS+ D + L + F G ++ R+ T++ +G+GYV + + A KA + +QG+
Sbjct: 174 RLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKE 233
Query: 363 INNRPVRLDYSIPK 376
I+ RP+ D S K
Sbjct: 234 IDGRPINCDMSTSK 247
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 181 bits (460), Expect = 1e-45
Identities = 91/187 (48%), Positives = 122/187 (64%), Gaps = 3/187 (1%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
+ E T+FVGRLSW++DD+WL EFE G ++ ARV+ + + RS+GYGYVDFE A+
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAP--RDDRAKKFGDVPSEPSDTLFLGNLSFEAD 309
A+ KEIDGR +N D+S +PA RA FGD SEPSDT+F+GNLSF A
Sbjct: 319 AAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNAT 378
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVR 369
D+L FG G+I S+R+PT P++ + KGFGYV + I+ A K E + G +I RP R
Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCR 437
Query: 370 LDYSIPK 376
LD+S P+
Sbjct: 438 LDFSTPR 444
Score = 61.2 bits (147), Expect = 3e-09
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 194 EPA-TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
EP+ T+FVG LS++ ++ L T F G + S R+ + + R +G+GYV F D A+K
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Query: 253 AIKEMHGKEIDGRPINCDMSTSKPAGAPRDDR 284
+ EM+G I GRP D ST + G R R
Sbjct: 423 CV-EMNGHFIAGRPCRLDFSTPRTGGGSRGGR 453
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 103 bits (258), Expect = 4e-22
Identities = 54/178 (30%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E A +FVG L++ ++ + L FE G V A V+Y R TD+SRG+G+V AE A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+++ + +++GR + + + APR R ++ V EP+ +++GNL ++ D L
Sbjct: 208 VEKFNRYDLNGRLLTVNKA------APRGSRPERAPRV-YEPAFRVYVGNLPWDVDNGRL 260
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
++F ++G++V R+ ET + +GFG+V +++ +A L G+ + R +R++
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Score = 67.0 bits (162), Expect = 5e-11
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 194 EPA-TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
EPA ++VG L W +D+ L+ F G V+ ARV+Y+R T RSRG+G+V D +
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 253 AIKEMHGKEIDGRPINCDMSTSKP 276
AI + G+ ++GR I +++ +P
Sbjct: 301 AISALDGQNLEGRAIRVNVAEERP 324
Score = 50.4 bits (119), Expect = 5e-06
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 238 GYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPA-GAPRDDRAKKFGDVPSEPS 296
G G V E+ + ++ G E +G D+S + G + + + P EPS
Sbjct: 89 GEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFP-EPS 147
Query: 297 DT--LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
+ LF+GNL+++ + L +F + G + + + ET+Q +GFG+V S+++A A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 355 FEGLQGEYINNRPVRLDYSIPK 376
E +N R + ++ + P+
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPR 229
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 101 bits (252), Expect = 2e-21
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 7/178 (3%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E A +FVG L + +D + L FE G V + V+Y R TD+SRG+G+V AEKA
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+++ + E++GR + + + APR R ++ V + + +++GNL ++ D L
Sbjct: 171 VEKFNSFEVNGRRLTVNRA------APRGSRPERQPRV-YDAAFRIYVGNLPWDVDSGRL 223
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
+F ++G++V R+ + ET + +GFG+VQ + + A L G+ + R ++++
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
Score = 58.5 bits (140), Expect = 2e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
I+VG L W +D L+ F G V+ ARV+ +R T RSRG+G+V +++ AI +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 258 HGKEIDGRPINCDMSTSK 275
G+ ++GR I +++ +
Sbjct: 269 DGQNLEGRAIKVNVAEER 286
Score = 50.8 bits (120), Expect = 4e-06
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 292 PSEPSDT-LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIED 350
P P + LF+GNL ++ D L +F + G + + + +T+Q +GFG+V ++E+
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 351 ATKAFEGLQGEYINNRPVRLDYSIPK 376
A KA E +N R + ++ + P+
Sbjct: 167 AEKAVEKFNSFEVNGRRLTVNRAAPR 192
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 96.3 bits (238), Expect = 8e-20
Identities = 59/197 (29%), Positives = 97/197 (48%), Gaps = 14/197 (7%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
PK + +FVG L +++D L FE G V V+Y++ T RSRG+G+V
Sbjct: 82 PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPA---GAPRDDRAKKFGDVPS---------- 293
S E A ++ +G E+DGRP+ + P G R R+ FG S
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRS-SFGSSGSGYGGGGGSGA 200
Query: 294 EPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+ +++GNLS+ D L +F + G++V R+ ++ + KGFG+V Y S ++
Sbjct: 201 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 260
Query: 354 AFEGLQGEYINNRPVRL 370
A + L G ++ R +R+
Sbjct: 261 AIKSLDGADLDGRQIRV 277
Score = 73.9 bits (180), Expect = 4e-13
Identities = 32/85 (37%), Positives = 53/85 (61%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
AG ++VG LSW +DD L++ F G V+ ARV+Y+R + RS+G+G+V ++ +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKP 276
AIK + G ++DGR I + ++P
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEARP 284
>At2g18510 [A] KOG0131 Splicing factor 3b subunit 4
Length = 363
Score = 93.2 bits (230), Expect = 7e-19
Identities = 55/184 (29%), Positives = 98/184 (52%), Gaps = 15/184 (8%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+ AT++VG L + +E L F G V++ V +R T+ + YG++++ + A+ A
Sbjct: 23 QDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYA 82
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
IK ++ ++ G+PI + ++ + KK DV + LF+GNL + D L
Sbjct: 83 IKVLNMIKLHGKPIRVNKAS----------QDKKSLDVGA----NLFIGNLDPDVDEKLL 128
Query: 314 YEIFGKYGEIVS-VRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
Y+ F +G I S +I P+T +GFG++ Y S E + A E + G+Y++NR + + Y
Sbjct: 129 YDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSY 188
Query: 373 SIPK 376
+ K
Sbjct: 189 AYKK 192
>Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 759
Score = 92.4 bits (228), Expect = 1e-18
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 14/191 (7%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FVGRL S E L+ F +G V V+ E+G+ RG+GYV F ++A+KE
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVP-----------SEPSDTLFLGNLS 305
+ +G IN ++ K ++ + + P ++ L + NLS
Sbjct: 65 I--TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLS 122
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
F+ D+L +F ++G ++ V IP P+ + +GFG+VQ+ ++ +A KA +G+ + I
Sbjct: 123 FKCSEDDLKTVFAQFGAVLEVNIPRKPDGKM-RGFGFVQFKNLLEAGKALKGMNMKEIKG 181
Query: 366 RPVRLDYSIPK 376
R V +D+++ K
Sbjct: 182 RTVAVDWAVAK 192
Score = 54.3 bits (129), Expect = 4e-07
Identities = 33/120 (27%), Positives = 66/120 (54%), Gaps = 13/120 (10%)
Query: 270 DMSTSKPAGAPRDDRA-----KKFGDVPSEPSD--TLFLGNLSFEADRDNLYEIFGKYGE 322
+++ S + ++D+A KK +PS+ ++ T+F+ NLSF+++ + L E+ ++GE
Sbjct: 301 ELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGE 360
Query: 323 IVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQ------GEYINNRPVRLDYSIPK 376
+ VRI HP+TE KG + Q+ + E A K G ++ R +++D ++ +
Sbjct: 361 LKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVDLAVTR 420
>CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 434
Score = 90.9 bits (224), Expect = 3e-18
Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+P T+FV L +I DE+L T F IG V+ A++++E D Y +V+F D + A A
Sbjct: 38 DPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP---YAFVEFSDHNQATLA 94
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT----LFLGNLSFEAD 309
++ +G+E+ + ++ A PR+ G+ S+P + +F+G+L E D
Sbjct: 95 LQSHNGRELLEKEMHVTW-----AFEPREP-----GENRSKPETSRHFHVFVGDLCSEID 144
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVR 369
L E F K+GE+ +I T + KG+G+V Y EDA +A + + G ++ R +R
Sbjct: 145 STKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIR 204
Query: 370 LDYSIPK 376
+++ K
Sbjct: 205 TNWATRK 211
Score = 67.8 bits (164), Expect = 3e-11
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 30/198 (15%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG L ID L+ F G V A+++ + T++ +GYG+V + + AE+AI EM
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 258 HGKEIDGRPINCDMSTSKP-----AGAPRDDR---------------AKKFGDV---PSE 294
+G + R I + +T KP G R DR K + ++ +
Sbjct: 194 NGAWLGRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAA 253
Query: 295 PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
+ ++++GN++ D + F ++G I VR T + +G+ +V++ + E A +A
Sbjct: 254 DNTSVYVGNIA-NLGEDEIRRAFDRFGPINEVR------TFKIQGYAFVKFETKESAARA 306
Query: 355 FEGLQGEYINNRPVRLDY 372
+ I + VR +
Sbjct: 307 IVQMNNADIGGQIVRCSW 324
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 89.7 bits (221), Expect = 8e-18
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 14/172 (8%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+++VG L +++ D L F +G V++ RV + T RS GYGYV+F + A +AI+E
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
++ + G+PI S RD ++ G + +F+ NL D L++
Sbjct: 97 LNYIPLYGKPIRVMYS-------HRDPSVRRSG------AGNIFIKNLDESIDHKALHDT 143
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G IVS ++ + Q KG+G+VQY + E A KA E L G +N++ V
Sbjct: 144 FSSFGNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Score = 72.8 bits (177), Expect = 1e-12
Identities = 49/176 (27%), Positives = 87/176 (48%), Gaps = 9/176 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V L+ S D+ LK F G + SA VM + G +S+G+G+V+FE+ A +A++ +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 275
Query: 258 HGKEIDGRPINCDMSTSKPAGAPR-----DDRAKKFGDVPSEPSDTLFLGNLSFEADRDN 312
+G + D + + K + K+ D S L++ NL +
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAAD--KFQSSNLYVKNLDPSISDEK 333
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
L EIF +G + S ++ P KG G+V + + E+AT+A L G+ I ++P+
Sbjct: 334 LKEIFSPFGTVTSSKVMRDPNGTS-KGSGFVAFATPEEATEAMSQLSGKMIESKPL 388
Score = 53.1 bits (126), Expect = 8e-07
Identities = 31/105 (29%), Positives = 55/105 (51%), Gaps = 9/105 (8%)
Query: 272 STSKPAGAPRDD---RAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRI 328
ST+ AP A +FG+ +L++G+L F L++ FG+ G +V+VR+
Sbjct: 14 STAAVTSAPATSGGATATQFGNT------SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRV 67
Query: 329 PTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
T + G+GYV + + +DA +A + L + +P+R+ YS
Sbjct: 68 CRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS 112
>At5g54900 [R] KOG0118 FOG: RRM domain
Length = 390
Score = 89.4 bits (220), Expect = 1e-17
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 15/187 (8%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPI-GGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
G TIFVG L+ + D L F+ + G V A+V+ +R T RS+GYG+V F D++
Sbjct: 151 GPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQM 210
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPA-----GAPRDDRAKKFGDVPSEPSD-TLFLGNLS 305
+A+ EM+G+ RP+ + +K A ++ + GD ++P++ T+F+G L
Sbjct: 211 RAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGD--NDPNNTTIFVGGLD 268
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
D L IFG++GE++ V+IP K G+VQY + A A L G +
Sbjct: 269 ANVTDDELKSIFGQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGTQLGG 322
Query: 366 RPVRLDY 372
+ +RL +
Sbjct: 323 QSIRLSW 329
Score = 73.2 bits (178), Expect = 7e-13
Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 8/180 (4%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A + ++++G L +D+ ++ + F G SA+V+ + T +S GYG+++F S AE
Sbjct: 56 ASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAE 115
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRD 311
+ + + +G P+ T + A K+F P T+F+G+L+ E
Sbjct: 116 RVL-----QTYNGAPMPSTEQTFRLNWAQAGAGEKRF--QTEGPDHTIFVGDLAPEVTDY 168
Query: 312 NLYEIF-GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRL 370
L + F YG + ++ T + KG+G+V++ + +A + G+Y + RP+R+
Sbjct: 169 MLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 89.0 bits (219), Expect = 1e-17
Identities = 53/184 (28%), Positives = 96/184 (51%), Gaps = 15/184 (8%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+ AT++VG L + + L F G V++ + +R T + +GYG+V+F + A+ A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
IK M+ ++ G+PI + +++ K DV + +F+GNL E D L
Sbjct: 71 IKIMNMIKLYGKPIRVNKASAH----------NKNLDVGA----NIFIGNLDPEIDEKLL 116
Query: 314 YEIFGKYGEIVSV-RIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
Y+ F +G I+ +I P+T KG+ ++ + S + + A E + G+Y+ NRP+ + Y
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 373 SIPK 376
+ K
Sbjct: 177 AFKK 180
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 89.0 bits (219), Expect = 1e-17
Identities = 47/183 (25%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
EP T++VG L ++ ++++ T F IG V +V+++ D Y +V+F D A +A
Sbjct: 44 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQA 100
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
++ M+ + + R + + + + D + F +F+G+LS E D L
Sbjct: 101 LQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFH---------VFVGDLSSEVDNQKL 151
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
E F +G++ ++ T + KG+G+V Y E+A +A E + G+++ R +R +++
Sbjct: 152 REAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Query: 374 IPK 376
K
Sbjct: 212 TRK 214
Score = 84.7 bits (208), Expect = 2e-16
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 12/180 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LS +D++ L+ F+P G V A+V+ + T +S+GYG+V + + AE+AI++M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 258 HGKEIDGRPINCDMSTSKPAG--APRDDRAKKFGDVPSEPS---DTLFLGNLSFEADRDN 312
+G+ + R I + +T KP P K + ++ ++ S ++++GN++ D
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDE 255
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
+ + F +G I VRI + +G+ +V++ + + A KA + + + + VR +
Sbjct: 256 IRQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 309
>At1g47490 [R] KOG0118 FOG: RRM domain
Length = 432
Score = 89.0 bits (219), Expect = 1e-17
Identities = 62/194 (31%), Positives = 97/194 (49%), Gaps = 18/194 (9%)
Query: 188 KTELAGEPATIFVGRLSWSIDDEWLKTEF-EPIGGVISARVMYERGTDRSRGYGYVDFED 246
+ E G +IFVG LS + D L F E V +A+V+ + T RS+GYG+V F D
Sbjct: 189 RLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGA--------PRDDRAKKFGDVPSEPSDT 298
++ KA+ EM+G + R + +T + P + GD+ + T
Sbjct: 249 ENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDI---MNTT 305
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
+F+G L ++L + F ++GEIVSV+IP KG G+VQ+ + +A +A E L
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKL 359
Query: 359 QGEYINNRPVRLDY 372
G I + VRL +
Sbjct: 360 NGTVIGKQTVRLSW 373
Score = 75.1 bits (183), Expect = 2e-13
Identities = 49/189 (25%), Positives = 96/189 (49%), Gaps = 14/189 (7%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGG--VISARVMYERGTDRSRGYGYVDFEDKSYA 250
GE TI+VG L +D+ +L + F ++S +V+ + S GYG+V+FE A
Sbjct: 98 GENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Query: 251 EKAIKEMHGKEIDG--RPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA 308
+K ++E +G + +P + ++ + R + G P ++F+G+LS +
Sbjct: 158 DKVLREFNGTTMPNTDQPFRLNWASFSTG----EKRLENNG-----PDLSIFVGDLSPDV 208
Query: 309 DRDNLYEIFG-KYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
+ L+E F KY + + ++ T + KG+G+V++G + TKA + G ++R
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 268
Query: 368 VRLDYSIPK 376
+R+ + P+
Sbjct: 269 MRIGPATPR 277
>At4g27000 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 88.6 bits (218), Expect = 2e-17
Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 10/189 (5%)
Query: 188 KTELAGEPATIFVGRLSWSIDDEWLKTEFEPI-GGVISARVMYERGTDRSRGYGYVDFED 246
+ + G T+FVG L+ + D L F+ + V A+V+ +R T RS+GYG+V F D
Sbjct: 165 RRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFAD 224
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKP--AGAPRDDRAKKFGDVPSEPSD-TLFLGN 303
+S +A+ EM+G+ RP+ + +K P + + S+P++ T+F+G
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGA 284
Query: 304 LSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYI 363
+ D+L +FG++GE+V V+IP K G+VQY + A +A L G +
Sbjct: 285 VDQSVTEDDLKSVFGQFGELVHVKIPA------GKRCGFVQYANRACAEQALSVLNGTQL 338
Query: 364 NNRPVRLDY 372
+ +RL +
Sbjct: 339 GGQSIRLSW 347
Score = 65.1 bits (157), Expect = 2e-10
Identities = 40/179 (22%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
AGE ++++G L +D+ +L F G +A+V+ + S GYG+++F + + AE
Sbjct: 76 AGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAE 135
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRD 311
+ ++ +G + ++ ++ R P T+F+G+L+ +
Sbjct: 136 RNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQ--------AEGPEHTVFVGDLAPDVTDH 187
Query: 312 NLYEIF-GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVR 369
L E F Y + ++ T + KG+G+V++ + +A + G+Y ++RP+R
Sbjct: 188 MLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>7290689 [A] KOG0131 Splicing factor 3b subunit 4
Length = 347
Score = 88.2 bits (217), Expect = 2e-17
Identities = 53/184 (28%), Positives = 94/184 (50%), Gaps = 15/184 (8%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+ ATI+ G L + + L F G V++ + +R T +GYG+V+F + A+
Sbjct: 11 QDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYG 70
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
IK M+ ++ G+PI + +++ +K DV + +F+GNL E D L
Sbjct: 71 IKIMNMIKLYGKPIRVNKASAH----------QKNLDVGA----NIFIGNLDVEVDEKLL 116
Query: 314 YEIFGKYGEIVSV-RIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
Y+ F +G I+ +I PET + K F ++ + S E + A + + G+Y+ NRP+ + Y
Sbjct: 117 YDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSY 176
Query: 373 SIPK 376
+ K
Sbjct: 177 AFKK 180
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 87.0 bits (214), Expect = 5e-17
Identities = 57/181 (31%), Positives = 93/181 (50%), Gaps = 14/181 (7%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L S+ + L F IG V S RV + T RS GY YV+F + EKA+
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
E++ I GRP C + S+ RD +K G + +F+ NL D L++
Sbjct: 140 ELNYTLIKGRP--CRIMWSQ-----RDPSLRKMG------TGNVFIKNLDPAIDNKALHD 186
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIP 375
F +G+I+S ++ E KG+G+V + S+E A A E + G +N++ V + + +
Sbjct: 187 TFSAFGKILSCKVAV-DELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVS 245
Query: 376 K 376
+
Sbjct: 246 R 246
Score = 67.8 bits (164), Expect = 3e-11
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+++ L I ++ F G + S ++ ++ D+ RG+G+V++ + A+KA+ E+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVDEL 321
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSD-----TLFLGNLSFEADRDN 312
+ KE G+ + + K ++ K++ + E + LF+ NL E D +
Sbjct: 322 NDKEYKGKKLYVGRAQKK--HEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDER 379
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
L F +G I S +I T E + KGFG+V Y + E+A KA + + +P+
Sbjct: 380 LKAEFSAFGTITSAKIMT-DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+ L +DDE LK EF G + SA++M + +S+G+G+V + A KA+ EM
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 258 HGKEIDGRPINCDMSTSK 275
+ + + G+P+ ++ K
Sbjct: 425 NQRMLAGKPLYVALAQRK 442
Score = 51.6 bits (122), Expect = 2e-06
Identities = 32/102 (31%), Positives = 48/102 (46%), Gaps = 4/102 (3%)
Query: 272 STSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTH 331
STS P A A G P+ S L++G L L+E+F G + S+R+
Sbjct: 59 STSTPTNA--SSVATPSGTAPTSAS--LYVGELDPSVTEAMLFELFNSIGPVASIRVCRD 114
Query: 332 PETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
T + G+ YV + ++ED KA + L I RP R+ +S
Sbjct: 115 AVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 87.0 bits (214), Expect = 5e-17
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+ L SID++ L F G ++S++VM + S+GY +V F+++S A++AI+EM
Sbjct: 217 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 274
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+GK + G C + + R DR + SE ++ +++ N + D + L ++F
Sbjct: 275 NGKLLKG----CKVFVGRFKN--RKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVF 327
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
KYG+ +SV++ T + + KGFG+V + S E A KA E + G IN +
Sbjct: 328 SKYGKTLSVKVMT-DSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQ 375
Score = 83.2 bits (204), Expect = 7e-16
Identities = 52/182 (28%), Positives = 90/182 (48%), Gaps = 6/182 (3%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A E +++ +DDE LK F G +S +VM + + +S+G+G+V F+ A+
Sbjct: 303 ASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAK 361
Query: 252 KAIKEMHGKEIDGRPI---NCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA 308
KA++EM+G++I+G+ I + A + K + L++ NL
Sbjct: 362 KAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTI 421
Query: 309 DRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
D + L F +G I V++ E Q KGFG + + S EDATKA + G + ++P+
Sbjct: 422 DDEKLRNEFSSFGSISRVKV--MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 479
Query: 369 RL 370
+
Sbjct: 480 SI 481
Score = 69.7 bits (169), Expect = 8e-12
Identities = 47/168 (27%), Positives = 85/168 (49%), Gaps = 15/168 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L + ++ L +F +G V+S R+ ++ T RS GY YV+F + A+KA+
Sbjct: 127 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 186
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ I G+ I S RD ++ G +F+ NL D LYE
Sbjct: 187 TMNFDIIKGKSIRLMWS-------QRDAYLRRSG------IGNVFIKNLDKSIDNKTLYE 233
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYI 363
F +G+I+S ++ + + + KG+ +V + + A +A E + G+ +
Sbjct: 234 HFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEMNGKLL 279
>At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 87.0 bits (214), Expect = 5e-17
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E +F+G +SW ++ L+ F G V+ A +M +R T R+RG+G+V F D + AE+
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRA---KKFGDVPSEP----SDTLFLGNLSF 306
+ H IDG+ + + PRDD K + P S +F+G L+
Sbjct: 64 VLLKH--IIDGKIVEAKKA------VPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLAS 115
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
+ F ++G I V + T++P+GFG++ Y S E K + E +N +
Sbjct: 116 SVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHE-LNGK 174
Query: 367 PVRLDYSIPK 376
V + ++PK
Sbjct: 175 MVEVKLAVPK 184
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 86.7 bits (213), Expect = 7e-17
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
G +++VG L +++ D L F + V+S RV + T+ S GYGYV++ + AEK
Sbjct: 43 GALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
Query: 253 AIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDN 312
A+++++ ++G+ I S+ RD A++ G LF+ NL D
Sbjct: 103 AMQKLNYSYLNGKMIRITYSS-------RDSSARRSG------VGNLFVKNLDKSVDNKT 149
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
L+E F G IVS ++ T Q +G+G+VQ+ + + A A E L G+ +N++ +
Sbjct: 150 LHEAFSGCGTIVSCKVAT-DHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Score = 69.7 bits (169), Expect = 8e-12
Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V LS + D+ LKT F G + SA VM + G +SR +G+V+FE+ A +A++ +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 258 HGKEIDG---------RPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA 308
+GK+ D + ++ S+ D KF + L++ NL
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGL------NLYVKNLDDTV 339
Query: 309 DRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
+ L E+F ++G I S ++ P + KG G+V + + +A++ + G+ + +P+
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPL 398
Score = 60.1 bits (144), Expect = 7e-09
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
+L++G+L F LY+ F + ++VSVR+ T G+GYV Y + +DA KA +
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 358 LQGEYINNRPVRLDYS 373
L Y+N + +R+ YS
Sbjct: 107 LNYSYLNGKMIRITYS 122
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 86.3 bits (212), Expect = 9e-17
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 15/180 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LS I E +K+ F P G + ARV+ + T +S+GYG+V F +K AE AI M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 258 HGKEIDGRPINCDMSTSKPAGAPR-----DDRAKKFGDVPSEPSD---TLFLGNLSFEAD 309
G+ + GR I + +T KP AP+ + + +F DV ++ S T++ G ++
Sbjct: 159 GGQWLGGRQIRTNWATRKPP-APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 217
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVR 369
+ + F +G+I+ +R+ PE KG+ +V++ + E A A + G I V+
Sbjct: 218 DQLMRQTFSPFGQIMEIRV--FPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
Score = 70.1 bits (170), Expect = 6e-12
Identities = 45/184 (24%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
G+P T++VG LS + + + F IG S +++ E ++ Y +V+F + A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAA 63
Query: 253 AIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDN 312
A+ M+G++I G+ + + +T+ + + D + F +F+G+LS E ++
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFH---------VFVGDLSPEITTED 112
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
+ F +G+I R+ T + KG+G+V + + DA A + G+++ R +R ++
Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 172
Query: 373 SIPK 376
+ K
Sbjct: 173 ATRK 176
>Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 265
Score = 86.3 bits (212), Expect = 9e-17
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 15/180 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LS I E +K+ F P G + ARV+ + T +S+GYG+V F +K AE AI M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 258 HGKEIDGRPINCDMSTSKPAGAPR-----DDRAKKFGDVPSEPSD---TLFLGNLSFEAD 309
G+ + GR I + +T KP AP+ + + +F DV ++ S T++ G ++
Sbjct: 120 GGQWLGGRQIRTNWATRKPP-APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 178
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVR 369
+ + F +G+I+ +R+ PE KG+ +V++ + E A A + G I V+
Sbjct: 179 DQLMRQTFSPFGQIMEIRV--FPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 232
Score = 55.1 bits (131), Expect = 2e-07
Identities = 33/138 (23%), Positives = 70/138 (49%), Gaps = 11/138 (7%)
Query: 239 YGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT 298
Y +V+F + A A+ M+G++I G+ + + +T+ + + D + F
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFH--------- 59
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
+F+G+LS E +++ F +G+I R+ T + KG+G+V + + DA A +
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 359 QGEYINNRPVRLDYSIPK 376
G+++ R +R +++ K
Sbjct: 120 GGQWLGGRQIRTNWATRK 137
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 85.9 bits (211), Expect = 1e-16
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A E +++ +DDE LK F G +S +VM + +S+G+G+V +E A
Sbjct: 187 AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDAN 245
Query: 252 KAIKEMHGKEIDGRPI---NCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA 308
KA++EM+GKEI G+ I + A R K + L++ NL
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 305
Query: 309 DRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
D + L + F +G I S ++ E + KGFG+V + S E+ATKA + G + ++P+
Sbjct: 306 DDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 82.8 bits (203), Expect = 9e-16
Identities = 55/173 (31%), Positives = 86/173 (48%), Gaps = 15/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L + + L +F P G V+S RV + T RS GY YV+F+ + AE+A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ I G+PI S RD +K G +F+ NL D LY+
Sbjct: 71 TMNFDVIKGKPIRIMWS-------QRDPSLRKSG------VGNVFIKNLDKSIDNKALYD 117
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G I+S ++ + KG+ +V + + E A KA E + G +N+R V
Sbjct: 118 TFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Score = 61.2 bits (147), Expect = 3e-09
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+++ L +IDDE L+ EF P G + SA+VM E G RS+G+G+V F A KA+ EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 HGKEIDGRPINCDMSTSK 275
+G+ + +P+ ++ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 85.9 bits (211), Expect = 1e-16
Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 7/176 (3%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LS + +E LK+ F G V A+V+ + T +S+GYG+V F +K AE AI M
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 88
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRA-KKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
+GK I R + + + K + RD ++ + + ++++GN+S + +L ++
Sbjct: 89 NGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDL 148
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
F YG+I VRI + + + +V+Y E ATKA + G+ + VR +
Sbjct: 149 FSTYGDIAEVRI------FKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSW 198
Score = 53.5 bits (127), Expect = 6e-07
Identities = 23/78 (29%), Positives = 47/78 (59%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
+F+G+LS + + L F K+GE+ ++ +T++ KG+G+V + + ++A A G+
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 88
Query: 359 QGEYINNRPVRLDYSIPK 376
G++I R VR +++ K
Sbjct: 89 NGKWIGKRAVRTNWAARK 106
>At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 492
Score = 85.9 bits (211), Expect = 1e-16
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G +SW ++E LK F G VI A ++ +R T R+RG+G+V F D + AE I E
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDR-------AKKFGDVPSEPSDT--LFLGNLSFEA 308
H IDGR + + PRDD+ + P P T +F+G L
Sbjct: 68 H--NIDGRLVEAKKA------VPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSV 119
Query: 309 DRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
+ F ++G V + T++P+GFG++ Y S E K E +N + V
Sbjct: 120 TESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHE-LNGKMV 178
Query: 369 RLDYSIPK 376
+ ++PK
Sbjct: 179 EVKRAVPK 186
Score = 49.7 bits (117), Expect = 9e-06
Identities = 25/75 (33%), Positives = 39/75 (51%), Gaps = 4/75 (5%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
G IFVG L S+ + KT FE G VMY+ T R RG+G++ ++ + EK
Sbjct: 105 GRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEK 164
Query: 253 AI----KEMHGKEID 263
+ E++GK ++
Sbjct: 165 VLLKTFHELNGKMVE 179
>At1g47500 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 85.1 bits (209), Expect = 2e-16
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 18/194 (9%)
Query: 188 KTELAGEPATIFVGRLSWSIDDEWLKTEF-EPIGGVISARVMYERGTDRSRGYGYVDFED 246
+ E G +IFVG L+ + D L F E V +A+V+ + T RS+GYG+V F D
Sbjct: 191 RLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 250
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGA--------PRDDRAKKFGDVPSEPSDT 298
++ KA+ EM+G + R + +T + P + GD + T
Sbjct: 251 ENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDT---INTT 307
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
+F+G L ++L + F ++GEIVSV+IP KG G+VQ+ + +A +A E L
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKL 361
Query: 359 QGEYINNRPVRLDY 372
G I + VRL +
Sbjct: 362 NGTVIGKQTVRLSW 375
Score = 71.6 bits (174), Expect = 2e-12
Identities = 48/189 (25%), Positives = 95/189 (49%), Gaps = 14/189 (7%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGG--VISARVMYERGTDRSRGYGYVDFEDKSYA 250
GE TI+VG L +D+ +L + F ++S +V+ + S GYG+V+FE A
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159
Query: 251 EKAIKEMHGKEIDG--RPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA 308
+K ++E +G + +P + ++ + R + G P ++F+G+L+ +
Sbjct: 160 DKVLQEFNGAPMPNTDQPFRLNWASFSTG----EKRLENNG-----PDLSIFVGDLAPDV 210
Query: 309 DRDNLYEIFG-KYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
L+E F KY + + ++ T + KG+G+V++G + TKA + G ++R
Sbjct: 211 SDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 270
Query: 368 VRLDYSIPK 376
+R+ + P+
Sbjct: 271 MRIGPATPR 279
>Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 386
Score = 84.7 bits (208), Expect = 2e-16
Identities = 57/180 (31%), Positives = 96/180 (52%), Gaps = 15/180 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LS I E +K F P G + ARV+ + T +S+GYG+V F +K AE AI++M
Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 258 HGKEIDGRPINCDMSTSKPAGAPR-----DDRAKKFGDV--PSEPSD-TLFLGNLSFEAD 309
G+ + GR I + +T KP AP+ + + + +V S PS+ T++ G ++
Sbjct: 168 GGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVR 369
+ + F +G+I+ +R+ P+ KG+ +V++ S E A A + G I V+
Sbjct: 227 EQLMRQTFSPFGQIMEIRV--FPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 70.9 bits (172), Expect = 4e-12
Identities = 41/182 (22%), Positives = 91/182 (49%), Gaps = 2/182 (1%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
P T++VG LS + + + F IG + +++ + T + Y +V+F + +A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 255 KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
M+G++I G+ + + +T+ + + S+ +F+G+LS + +++
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPQITTEDIK 123
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSI 374
F +G I R+ T + KG+G+V + + DA A + + G+++ R +R +++
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 375 PK 376
K
Sbjct: 184 RK 185
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 84.7 bits (208), Expect = 2e-16
Identities = 57/180 (31%), Positives = 96/180 (52%), Gaps = 15/180 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LS I E +K F P G + ARV+ + T +S+GYG+V F +K AE AI++M
Sbjct: 97 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 258 HGKEIDGRPINCDMSTSKPAGAPR-----DDRAKKFGDV--PSEPSD-TLFLGNLSFEAD 309
G+ + GR I + +T KP AP+ + + + +V S PS+ T++ G ++
Sbjct: 157 GGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 215
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVR 369
+ + F +G+I+ +R+ P+ KG+ +V++ S E A A + G I V+
Sbjct: 216 EQLMRQTFSPFGQIMEIRV--FPD----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 269
Score = 68.6 bits (166), Expect = 2e-11
Identities = 42/182 (23%), Positives = 92/182 (50%), Gaps = 13/182 (7%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
P T++VG LS + + + F IG + +++ + T + Y +V+F + +A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAAL 63
Query: 255 KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
M+G++I G+ + + +T+ + + D + F +F+G+LS + +++
Sbjct: 64 AAMNGRKIMGKEVKVNWATTP--SSQKKDTSNHFH---------VFVGDLSPQITTEDIK 112
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSI 374
F +G I R+ T + KG+G+V + + DA A + + G+++ R +R +++
Sbjct: 113 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 172
Query: 375 PK 376
K
Sbjct: 173 RK 174
>CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 376
Score = 84.7 bits (208), Expect = 2e-16
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 12/180 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LS +D++ L+ F+P G V A+V+ + T +S+GYG+V + + AE+AI++M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 258 HGKEIDGRPINCDMSTSKPAG--APRDDRAKKFGDVPSEPS---DTLFLGNLSFEADRDN 312
+G+ + R I + +T KP P K + ++ ++ S ++++GN++ D
Sbjct: 165 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDE 223
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
+ + F +G I VRI + +G+ +V++ + + A KA + + + + VR +
Sbjct: 224 IRQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 277
Score = 60.1 bits (144), Expect = 7e-09
Identities = 38/183 (20%), Positives = 76/183 (40%), Gaps = 44/183 (24%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
EP T++VG L ++ ++++ T F IG V +V+++
Sbjct: 44 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE---------------------- 81
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+ + + + D + F +F+G+LS E D L
Sbjct: 82 -------------MKVNWAVEPGQQQSKIDTTRHFH---------VFVGDLSSEVDNQKL 119
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
E F +G++ ++ T + KG+G+V Y E+A +A E + G+++ R +R +++
Sbjct: 120 REAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 179
Query: 374 IPK 376
K
Sbjct: 180 TRK 182
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 84.7 bits (208), Expect = 2e-16
Identities = 55/172 (31%), Positives = 86/172 (49%), Gaps = 14/172 (8%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+++VG L ++ D L F G V+S RV + T RS GYGYV++ A +A+ E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
++ ++GR I S RD +K G +F+ NL D L+E
Sbjct: 106 LNFMALNGRAIRVMYSV-------RDPSLRKSG------VGNIFIKNLDKSIDHKALHET 152
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G I+S ++ P + Q KG+G+VQY + E A A + L G +N++ V
Sbjct: 153 FSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 70.5 bits (171), Expect = 5e-12
Identities = 51/177 (28%), Positives = 87/177 (48%), Gaps = 11/177 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V LS S+ DE L F G S +M + G +S+G+G+V+FE+ A +A+ +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAK-KFGDVPSEPSD-----TLFLGNLSFEADRD 311
+GK D + + K + R+ K KF E +D L++ NL D
Sbjct: 285 NGKTFDDKEWFVGKAQKK---SERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 312 NLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
L E F +G I S ++ P + +G G+V + + E+AT+A + G+ I +P+
Sbjct: 342 KLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPL 397
Score = 66.2 bits (160), Expect = 9e-11
Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IF+ L SID + L F G ++S +V + + +S+GYG+V ++ A+ AI ++
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G ++ + + K P ++ K +++ NLS + L ++F
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVK---------FTNVYVKNLSESLSDEELNKVF 244
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
G++G S I E + KGFG+V + + +DA +A + L G+ +++
Sbjct: 245 GEFGVTTSCVIMRDGEGKS-KGFGFVNFENSDDAARAVDALNGKTFDDK 292
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/77 (33%), Positives = 45/77 (57%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
+L++G+L L+E F + G++VSVR+ T + G+GYV Y + +DA++A
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 358 LQGEYINNRPVRLDYSI 374
L +N R +R+ YS+
Sbjct: 106 LNFMALNGRAIRVMYSV 122
>Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 360
Score = 84.0 bits (206), Expect = 4e-16
Identities = 50/173 (28%), Positives = 89/173 (50%), Gaps = 15/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L + + L +F P G ++S R+ ++ T RS GY YV+++ A++A++
Sbjct: 162 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 221
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
++ I GRP+ S RD +K G +F+ NL D LY
Sbjct: 222 TLNFDVIKGRPVRIMWS-------QRDPSLRKSG------VGNVFIKNLGKTIDNKALYN 268
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
IF +G I+S ++ + + PKG+G+V + E A +A + + G ++N R +
Sbjct: 269 IFSAFGNILSCKVAC--DEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 319
Score = 52.8 bits (125), Expect = 1e-06
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 283 DRAKKFGDVPSEPS---DTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKG 339
D + GD P +L++G+L E LYE F G I+S+RI T + G
Sbjct: 145 DADETLGDCEGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLG 204
Query: 340 FGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
+ YV Y DA +A E L + I RPVR+ +S
Sbjct: 205 YAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWS 238
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 83.6 bits (205), Expect = 6e-16
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L S+ + L F PIG V S RV + T S GY YV+F D KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
+++ I GR C + S+ RD +K G S +F+ NL + D LY+
Sbjct: 98 QLNYTPIKGR--LCRIMWSQ-----RDPSLRKKG------SGNIFIKNLHPDIDNKALYD 144
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G+I+S +I T E + KGFG+V + A +A + L G +N + +
Sbjct: 145 TFSVFGDILSSKIAT-DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196
Score = 74.7 bits (182), Expect = 3e-13
Identities = 48/167 (28%), Positives = 88/167 (51%), Gaps = 9/167 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IF+ L ID++ L F G ++S+++ + +S+G+G+V FE++ A++AI +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G ++G+ I S R +R + + + ++ L++ N++ E + E+F
Sbjct: 187 NGMLLNGQEIYVAPHLS------RKERDSQLEETKAHYTN-LYVKNINSETTDEQFQELF 239
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYIN 364
K+G IVS + + + KGFG+V Y EDA KA E L +N
Sbjct: 240 AKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELN 285
Score = 64.3 bits (155), Expect = 3e-10
Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTD-RSRGYGYVDFEDKSYAEKAIKE 256
++V ++ DE + F G ++SA + E+ D + +G+G+V++E A KA++
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASL--EKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 257 MHGKEIDGRPINCDMSTSKPAGA---PRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
++ E++G + + K + A + + LF+ NL D + L
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKL 338
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
E F YG I S ++ E + KGFG+V + + E+ATKA + + +P+
Sbjct: 339 EEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 392
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 83.6 bits (205), Expect = 6e-16
Identities = 58/185 (31%), Positives = 93/185 (49%), Gaps = 18/185 (9%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
+GE T+ + LS+S +E L+ FE + + + +S+GY +++F A+
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAK 537
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRD 311
+A+ + +EI+GR I ++ P G+P + S+PS TLF+ LS + +
Sbjct: 538 EALNSCNKREIEGRAIRLELQG--PRGSP---------NARSQPSKTLFVKGLSEDTTEE 586
Query: 312 NLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
L E F V RI T ET KGFG+V + S EDA A E ++ I+ V LD
Sbjct: 587 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 643
Query: 372 YSIPK 376
++ PK
Sbjct: 644 WAKPK 648
Score = 78.6 bits (192), Expect = 2e-14
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+ L + + + LK FE + R++ + G +S+G Y++F+ ++ AEK +E
Sbjct: 394 TLLAKNLPYKVTQDELKEVFEDAAEI---RLVSKDG--KSKGIAYIEFKTEADAEKTFEE 448
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
G EIDGR I+ + K G +D R K S S TL L NLS+ A + L E+
Sbjct: 449 KQGTEIDGRSISLYYTGEK--GQNQDYRGGK-NSTWSGESKTLVLSNLSYSATEETLQEV 505
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIPK 376
F K +++P + + + KG+ ++++ S EDA +A I R +RL+ P+
Sbjct: 506 FEK---ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561
Score = 66.2 bits (160), Expect = 9e-11
Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 24/206 (11%)
Query: 172 KRKAXXXXXXXXXXXPKTELAG-EPAT---IFVGRLSWSIDDEWLKTEFEPIGGVISARV 227
KRK K ++ G EP T +FVG L+++ LKT + V
Sbjct: 279 KRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAV 338
Query: 228 MYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKK 287
+ R +R +GYVDFE EKA+ E+ G ++ G I + K + RD R
Sbjct: 339 VDVR-IGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKDSKKERDAR--- 393
Query: 288 FGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGS 347
TL NL ++ +D L E+F EI V + + KG Y+++ +
Sbjct: 394 ----------TLLAKNLPYKVTQDELKEVFEDAAEIRLV-----SKDGKSKGIAYIEFKT 438
Query: 348 IEDATKAFEGLQGEYINNRPVRLDYS 373
DA K FE QG I+ R + L Y+
Sbjct: 439 EADAEKTFEEKQGTEIDGRSISLYYT 464
Score = 53.5 bits (127), Expect = 6e-07
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FV LS +E LK F+ G + AR++ +R T S+G+G+VDF + A+ A +
Sbjct: 573 TLFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 629
Query: 257 MHGKEIDGRPINCDMSTSKPAG 278
M EIDG + D + K G
Sbjct: 630 MEDGEIDGNKVTLDWAKPKGEG 651
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 83.2 bits (204), Expect = 7e-16
Identities = 53/173 (30%), Positives = 87/173 (49%), Gaps = 15/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L + + L +F P G ++S RV + T RS GY YV+F+ + AE+A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ I G+P+ S RD +K G +F+ NL D LY+
Sbjct: 71 TMNFDVIKGKPVRIMWS-------QRDPSLRKSG------VGNIFIKNLDKSIDNKALYD 117
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G I+S ++ + KG+G+V + + E A +A E + G +N+R V
Sbjct: 118 TFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 79.3 bits (194), Expect = 1e-14
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 9/180 (5%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A E +++ +DDE LK F P +S +VM + + +S+G+G+V FE A+
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE-SGKSKGFGFVSFERHEDAQ 242
Query: 252 KAIKEMHGKEIDGRPI---NCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA 308
KA+ EM+GKE++G+ I + R K + L++ NL
Sbjct: 243 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 302
Query: 309 DRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
D + L + F +G I S ++ E + KGFG+V + S E+ATKA + G + +P+
Sbjct: 303 DDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 360
Score = 59.3 bits (142), Expect = 1e-08
Identities = 31/78 (39%), Positives = 47/78 (59%), Gaps = 2/78 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V L IDDE L+ EF P G + SA+VM E G RS+G+G+V F A KA+ EM
Sbjct: 293 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 350
Query: 258 HGKEIDGRPINCDMSTSK 275
+G+ + +P+ ++ K
Sbjct: 351 NGRIVATKPLYVALAQRK 368
Score = 50.1 bits (118), Expect = 7e-06
Identities = 26/82 (31%), Positives = 44/82 (52%)
Query: 292 PSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDA 351
PS P +L++G+L + LYE F G I+S+R+ T + G+ YV + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 352 TKAFEGLQGEYINNRPVRLDYS 373
+A + + + I +PVR+ +S
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWS 87
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 83.2 bits (204), Expect = 7e-16
Identities = 58/196 (29%), Positives = 93/196 (46%), Gaps = 25/196 (12%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG LS + D L F ARVM+++ T RSRG+G+V F ++ A+ AI EM
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 258 HGKEIDGRPINCDMSTSKPA------------------GAPRDDRAKKFGDVPSEPSD-- 297
+GK + R I C+ +T G+ D R D P
Sbjct: 210 NGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFT 269
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE- 356
T+++GNLS E + +L+ +F G V + ++ KGFG+V+Y + ++A A +
Sbjct: 270 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEV----RVQRDKGFGFVRYNTHDEAALAIQM 325
Query: 357 GLQGEYINNRPVRLDY 372
G ++ +R +R +
Sbjct: 326 GNAQPFLFSRQIRCSW 341
Score = 66.2 bits (160), Expect = 9e-11
Identities = 41/177 (23%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+++ G + + + L+ F G + S +++ + D+S YG+V + D+ A AI
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKS-SYGFVHYFDRRCASMAIMT 119
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
++G+ I G+P+ + + A R+D + F +F+G+LS E L++
Sbjct: 120 LNGRHIFGQPMKVNWAY---ATGQREDTSSHFN---------IFVGDLSPEVTDAALFDS 167
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
F + R+ +T + +GFG+V + + +DA A + G+++++R +R +++
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 82.8 bits (203), Expect = 9e-16
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A E +++ +DDE LK F G +S +VM + + +S+G+G+V FE A+
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQ 245
Query: 252 KAIKEMHGKEIDGRPI---NCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA 308
KA+ EM+GKE++G+ I + R K + L++ NL
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGI 305
Query: 309 DRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
D + L + F +G I S ++ E + KGFG+V + S E+ATKA + G + +P+
Sbjct: 306 DDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 68.9 bits (167), Expect = 1e-11
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L + + L +F P G ++S R+ + T S Y YV+F+ AE A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ I G+P+ S RD +K G +F+ NL + LY+
Sbjct: 71 TMNFDVIKGKPVRIMWS-------QRDPSLRKSG------VGNIFVKNLDKSINNKALYD 117
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
+G I+S + + KG+G+V + + E A +A + + G +N R V
Sbjct: 118 TVSAFGNILSCNVVC--DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V L IDDE L+ F P G + SA+VM E G RS+G+G+V F A KA+ EM
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 258 HGKEIDGRPINCDMSTSK 275
+G+ + +P+ ++ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
>At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 524
Score = 82.8 bits (203), Expect = 9e-16
Identities = 54/201 (26%), Positives = 91/201 (44%), Gaps = 23/201 (11%)
Query: 190 ELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSY 249
E A + +F+G +SW D+E L+ F G ++ A +M +R T R+RG+G++ F D S
Sbjct: 2 ESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSV 61
Query: 250 AEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDR--------------AKKFGDVPSEP 295
AE+ I + H IDGR + + PRDD+ G+
Sbjct: 62 AERVIMDKH--IIDGRTVEAKKA------VPRDDQQVLKRHASPMHLISPSHGGNGGGAR 113
Query: 296 SDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAF 355
+ +F+G L F ++G I V + T++P+GFG++ + S E
Sbjct: 114 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 173
Query: 356 EGLQGEYINNRPVRLDYSIPK 376
E +N + V + ++PK
Sbjct: 174 HKTFHE-LNGKMVEVKRAVPK 193
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 82.8 bits (203), Expect = 9e-16
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 4/186 (2%)
Query: 189 TELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKS 248
T+ +GE ++VG L ++I L F G V+ +++Y++ TDRSRG+G+V
Sbjct: 109 TQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIE 168
Query: 249 YAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT---LFLGNLS 305
A++A++ + +I GR + + P G + K D D+ ++ GNL
Sbjct: 169 EAKEAMQMFNSSQIGGRTVKVNF-PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLG 227
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
+ L + FG ++ ++ T + +GFG++ + S E+ A + G +
Sbjct: 228 WNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEG 287
Query: 366 RPVRLD 371
R +RL+
Sbjct: 288 RALRLN 293
Score = 70.5 bits (171), Expect = 5e-12
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
P ++ G L W++ + LK F GV+ A+V+YER T RSRG+G++ FE + A+
Sbjct: 218 PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 255 KEMHGKEIDGRPINCDMST--SKPAGAP 280
M+G E++GR + ++++ KP +P
Sbjct: 278 ATMNGVEVEGRALRLNLASEREKPTVSP 305
Score = 55.5 bits (132), Expect = 2e-07
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
L++GNL + L +IFG+ G +V V+I T++ +GFG+V GSIE+A +A +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 359 QGEYINNRPVRLDY 372
I R V++++
Sbjct: 178 NSSQIGGRTVKVNF 191
>At3g19130 [R] KOG0118 FOG: RRM domain
Length = 435
Score = 82.8 bits (203), Expect = 9e-16
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 24/198 (12%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEF-EPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
G ++FVG LS + D L F + V SA+V+ + T RS+GYG+V F D++
Sbjct: 199 GPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERS 258
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKK---------------FGDVPSEPS 296
+A+ EM+G R + ++T K A A + + + +G S
Sbjct: 259 RALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES 318
Query: 297 D--TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
T+F+G + + ++L + F ++GE+VSV+IP KG G+VQ+ + A A
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDA 372
Query: 355 FEGLQGEYINNRPVRLDY 372
E L G I VRL +
Sbjct: 373 IESLNGTVIGKNTVRLSW 390
Score = 75.9 bits (185), Expect = 1e-13
Identities = 49/183 (26%), Positives = 96/183 (51%), Gaps = 12/183 (6%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T++VG L +D+ +L + F G V S +V+ + T +S GYG+V+F ++ AE+ ++
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 257 MHGKEI--DGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
G + +P + ++ + RA V + P ++F+G+LS + L+
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTG----EKRA-----VENGPDLSVFVGDLSPDVTDVLLH 219
Query: 315 EIFG-KYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
E F +Y + S ++ T + KG+G+V++G + ++A + G Y +NR +R+ +
Sbjct: 220 ETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
Query: 374 IPK 376
PK
Sbjct: 280 TPK 282
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 82.8 bits (203), Expect = 9e-16
Identities = 55/179 (30%), Positives = 95/179 (52%), Gaps = 8/179 (4%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+ ++V L ++ D+ L T F G V S VM + G RSRG+G+V+F + A+KA
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKA 258
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGD----VPSEPSDTLFLGNLSFEAD 309
++ + G ++ + + + K R+ +KF D P+ L++ NLS +
Sbjct: 259 MESLCGLQLGSKKLFVGKALKK--DERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMN 316
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
L EIFG YG+IVS ++ H E + KGFG+V + + E++ +A L G ++ +P+
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
Score = 72.8 bits (177), Expect = 1e-12
Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 12/181 (6%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A ++V L SI L+ F P G ++S +V+ E G +S+G+G+V F+ + A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENG--QSKGFGFVQFDTEQSAVSARS 169
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
+HG + G+ + +K D+RA G ++ S +++ NL D L+
Sbjct: 170 ALHGSMVYGKKLFVAKFINK------DERAAMAG---NQDSTNVYVKNLIETVTDDCLHT 220
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIP 375
+F +YG + SV + + +GFG+V + + E+A KA E L G + ++ + + ++
Sbjct: 221 LFSQYGTVSSV-VVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK 279
Query: 376 K 376
K
Sbjct: 280 K 280
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 82.4 bits (202), Expect = 1e-15
Identities = 51/176 (28%), Positives = 88/176 (49%), Gaps = 6/176 (3%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FV + IDDE LK F G S +V+ + + +S+G+G+V +E A+KA+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 258 HGKEIDGRPI---NCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
HGK IDG+ + + A R + + P +++ NL + + L
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRL 370
E F +G I ++ E Q KGFG V + S E+ATKA + + G + ++P+ +
Sbjct: 320 EEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
Score = 73.9 bits (180), Expect = 4e-13
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A ++VG L + ++ L +F P G + R+ + T GYGYV+F + AE A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ I+G+P + S+P DDR +K G +F+ NL D L+
Sbjct: 78 TMNFDLINGKPFR--LMWSQP-----DDRLRKSG------VGNIFIKNLDKSIDNRALFY 124
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
+F +G I+S ++ + KG+ YV + S+ A +A + G +NNR V
Sbjct: 125 LFSAFGNILSCKVVC--DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
Score = 51.2 bits (121), Expect = 3e-06
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
I++ L +I+DE LK EF G + A+VM E G + +G+G V F A KA+ EM
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG--QGKGFGVVCFSSFEEATKAVDEM 361
Query: 258 HGKEIDGRPINCDMSTSK 275
+G+ + +P++ + ++
Sbjct: 362 NGRIVGSKPLHVTLGQAR 379
>7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 464
Score = 82.4 bits (202), Expect = 1e-15
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 13/183 (7%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+P T++VG L S+ ++ L F +G V S +++ E G D Y ++++ + A A
Sbjct: 5 QPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP---YAFIEYSNYQAATTA 61
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+ M+ + + I + +TS P P+ D + +F+G+LS E + + L
Sbjct: 62 LTAMNKRLFLEKEIKVNWATS-PGNQPKTDISSHHH---------IFVGDLSPEIETETL 111
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
E F +GEI + RI P T + KG+ +V + +A A + + G++I +R +R ++S
Sbjct: 112 REAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWS 171
Query: 374 IPK 376
K
Sbjct: 172 TRK 174
Score = 67.8 bits (164), Expect = 3e-11
Identities = 58/209 (27%), Positives = 97/209 (45%), Gaps = 33/209 (15%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
PKT+++ IFVG LS I+ E L+ F P G + + R++ + T +S+GY +V F
Sbjct: 87 PKTDISSHHH-IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVK 145
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSK----------------PAGAPRDDRAKK--- 287
K+ AE AI+ M+G+ I R I + ST K G P + K
Sbjct: 146 KAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQ 205
Query: 288 ---FGDVPSEPS---DTLFLGNLSFEADRDNL-YEIFGKYGEIVSVRIPTHPETEQPKGF 340
F +V ++ S T++ G D+L ++ F ++G I VR+ + KGF
Sbjct: 206 RHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRV------FKDKGF 259
Query: 341 GYVQYGSIEDATKAFEGLQGEYINNRPVR 369
++++ + E A A E ++ V+
Sbjct: 260 SFIKFVTKEAAAHAIEHTHNSEVHGNLVK 288
>At5g19350 [R] KOG0118 FOG: RRM domain
Length = 425
Score = 82.0 bits (201), Expect = 2e-15
Identities = 60/202 (29%), Positives = 94/202 (45%), Gaps = 26/202 (12%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEP-IGGVISARVMYERGTDRSRGYGYVDFEDKSYA 250
AG +IFVG L+ + D L+ F V A+V+ + T RS+GYG+V F ++S
Sbjct: 112 AGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESER 171
Query: 251 EKAIKEMHGKEIDGRPINCDMSTSK---------------PAGAPRDDRAKKFGDVPSEP 295
+A+ EM+G RP+ +T K P P A V
Sbjct: 172 NRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPE 231
Query: 296 SD----TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDA 351
SD T+ + NL + L + F + GE++ V+IP KG+GYVQ+ + A
Sbjct: 232 SDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPA------TKGYGYVQFKTRPSA 285
Query: 352 TKAFEGLQGEYINNRPVRLDYS 373
+A + +QG+ I + VR+ +S
Sbjct: 286 EEAVQRMQGQVIGQQAVRISWS 307
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/184 (23%), Positives = 94/184 (50%), Gaps = 10/184 (5%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E T+++G L + +D+ +L + F G ++S +V+ + T + GYG+++F + AE+
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
++ +G ++ G + ++ + + V + P ++F+G+L+ + L
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQK---------VDAGPDHSIFVGDLAPDVTDYLL 132
Query: 314 YEIFG-KYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
E F Y + ++ T P T + KG+G+V++ + +A + G Y + RP+R+
Sbjct: 133 QETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISA 192
Query: 373 SIPK 376
+ PK
Sbjct: 193 ATPK 196
>At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 82.0 bits (201), Expect = 2e-15
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
Query: 191 LAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYA 250
+ + +F+G +SW D+ L+ F G V+ VM E+ T R RG+G+V F D +
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 251 EKAIKEMHGKEIDGRPINCDMSTSKPAGAPRD-----DRAKKFGDVPSEPSDTLFLGNLS 305
++ +++ H ID R ++ + S+ +P + ++ F + + +F+G L
Sbjct: 61 DRVLQDKH--HIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLP 118
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
D F YG + I T++P+GFG+V + S ED+ +N
Sbjct: 119 PALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS-EDSVDLVLHKTFHDLNG 177
Query: 366 RPVRLDYSIPK 376
+ V + ++PK
Sbjct: 178 KQVEVKRALPK 188
>At1g49600 [R] KOG0118 FOG: RRM domain
Length = 445
Score = 81.6 bits (200), Expect = 2e-15
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEP-IGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
G +IFVG L+ + D L F V A+V+ + T RS+GYG+V F D++
Sbjct: 210 GPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERS 269
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKK-------------FGDVPSEPSDT 298
+A+ EM+G R + ++T K A A + D S S T
Sbjct: 270 RAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNS-T 328
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
+F+G L + ++L + F +GE+VSV+IP KG G+VQ+ + + A +A L
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNL 382
Query: 359 QGEYINNRPVRLDY 372
G I VRL +
Sbjct: 383 NGTVIGKNTVRLSW 396
Score = 74.3 bits (181), Expect = 3e-13
Identities = 48/183 (26%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T++VG L +D+ +L T F V S +V+ + T +S GYG+V+F +S AE+A++
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 257 MHGKEIDG--RPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
G + +P + ++ + RA + G P ++F+G+L+ + L
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTG----EKRASENG-----PDLSIFVGDLAPDVSDAVLL 230
Query: 315 EIF-GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
E F G+Y + ++ T + KG+G+V++G + ++A + G + ++R +R+ +
Sbjct: 231 ETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
Query: 374 IPK 376
PK
Sbjct: 291 TPK 293
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 81.3 bits (199), Expect = 3e-15
Identities = 51/173 (29%), Positives = 87/173 (49%), Gaps = 15/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L + + L +F P G ++S RV + T RS GY Y++F+ + AE+A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ + + G+PI S RD +K G +F+ NL D LY+
Sbjct: 71 TMNFEMLKGQPIRIMWS-------QRDPGLRKSG------VGNIFIKNLEDSIDNKALYD 117
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G I+S ++ + +GFG+V + + E A +A + G +N+R V
Sbjct: 118 TFSTFGNILSCKVAC--DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168
Score = 68.2 bits (165), Expect = 2e-11
Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IF+ L SID++ L F G ++S +V + SRG+G+V FE A++AI M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G ++ R + S R +R + G E ++ +++ NL + D L ++F
Sbjct: 159 NGMLLNDRKVFVGHFKS------RREREAELGARALEFTN-IYVKNLPVDVDEQGLQDLF 211
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
++G+++SV++ + + FG+V + E+A KA + G+ ++ R
Sbjct: 212 SQFGKMLSVKV-MRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 58.2 bits (139), Expect = 2e-08
Identities = 40/143 (27%), Positives = 68/143 (46%), Gaps = 16/143 (11%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E I+V L +D++ L+ F G ++S +VM + + SR +G+V+FE A+KA
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 254 IKEMHGKEIDGRPINCDMSTSKPA---------GAPRDDRAKKFGDVPSEPSDTLFLGNL 304
+ M+GKE+ GR + + + + DR +++ V L++ NL
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV------NLYVKNL 301
Query: 305 SFEADRDNLYEIFGKYGEIVSVR 327
D D L + F YG I S +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAK 324
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 81.3 bits (199), Expect = 3e-15
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG LS + D L F ARVM+++ T RSRG+G+V F ++ A+ AI EM
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 258 HGKEIDGRPINCDMST------------------SKPAGAPRDDRAKKFGDVPSEPSD-- 297
+GK + R I C+ +T G+ D + + P S
Sbjct: 206 NGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFT 265
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE- 356
T+++GNL+ E + +L+ F G V + ++ KGFG+V+Y + +A A +
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEV----RVQRDKGFGFVRYNTHPEAALAIQM 321
Query: 357 GLQGEYINNRPVRLDY 372
G Y+ NR ++ +
Sbjct: 322 GNTQPYLFNRQIKCSW 337
Score = 70.5 bits (171), Expect = 5e-12
Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 16/177 (9%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+++VG + + + L+ F G V S++++ + D+S YG+V + D+ A AI
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRK---DKS-SYGFVHYFDRRSAALAILS 115
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
++G+ + G+PI + + A R+D + F +F+G+LS E LY+
Sbjct: 116 LNGRHLFGQPIKVNWAY---ATGQREDTSSHFN---------IFVGDLSPEVTDATLYQS 163
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
F + R+ +T + +GFG+V + + +DA A + G+++++R +R +++
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 81.3 bits (199), Expect = 3e-15
Identities = 51/176 (28%), Positives = 93/176 (51%), Gaps = 8/176 (4%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V + DDE LK FEP G + S +VM + +S+G+G+V FE AE A++ +
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT-----LFLGNLSFEADRDN 312
+GK++ G + ++ ++ + + +KF ++ + ++ L++ NL D D
Sbjct: 244 NGKDM-GEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
L F YG I S ++ T E + KGFG+V + + +AT A L G + ++P+
Sbjct: 303 LRIAFSPYGNITSAKVMT-DEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPL 357
Score = 76.6 bits (187), Expect = 7e-14
Identities = 51/181 (28%), Positives = 89/181 (48%), Gaps = 14/181 (7%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L +++ L +F G V+S RV + T RS GY YV+F+ + AE+A+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ + +PI S RD ++ G +F+ NL D +Y+
Sbjct: 62 TMNFDLVRNKPIRIMWS-------QRDPSLRRSG------VGNVFIKNLDRAIDNKAIYD 108
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIP 375
F +G I+S ++ T E KG+G+V + + E A + + + G +N + V + IP
Sbjct: 109 TFSAFGNILSCKVAT-DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 376 K 376
+
Sbjct: 168 R 168
Score = 51.2 bits (121), Expect = 3e-06
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V L +IDD+ L+ F P G + SA+VM + RS+G+G+V F S A A+ E+
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTEL 347
Query: 258 HGKEIDGRPINCDMSTSK 275
+G+ + +P+ ++ K
Sbjct: 348 NGRVVGSKPLYVALAQRK 365
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 80.9 bits (198), Expect = 4e-15
Identities = 59/181 (32%), Positives = 87/181 (47%), Gaps = 11/181 (6%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEP-IGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
TIFVG L+ + D L F V A+V+ +R T R++GYG+V F D+S +A+
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 256 EMHGKEIDGRPINCDMSTSKP-AGAPRDDRAKKFGDVPSE---PSDTLFLGNLSFEADRD 311
EM+G RP+ + SK RD V ++ + T+F+G L D
Sbjct: 216 EMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDD 275
Query: 312 NLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
+L +F +YGEIV V+IP K G+VQ+ A +A L G + VRL
Sbjct: 276 HLKNVFSQYGEIVHVKIPA------GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLS 329
Query: 372 Y 372
+
Sbjct: 330 W 330
Score = 67.4 bits (163), Expect = 4e-11
Identities = 45/182 (24%), Positives = 86/182 (46%), Gaps = 13/182 (7%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A E T+++G L + +D+ +L F G ++SA+V+ + T + GYG+++F + AE
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 252 KAIKEMHGKEIDGRPINCDMS--TSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEAD 309
+ ++ + I P S +G RDD P T+F+G+L+ +
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDD----------SPDYTIFVGDLAADVT 167
Query: 310 RDNLYEIF-GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
L E F Y + ++ T + KG+G+V++ + +A + G + RP+
Sbjct: 168 DYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPM 227
Query: 369 RL 370
R+
Sbjct: 228 RI 229
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 80.5 bits (197), Expect = 5e-15
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 21/185 (11%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
+GE T+ + LS+S +E L+ FE + + + +S+GY +++F A+
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAK 537
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRD 311
+A+ + +EI+GR I ++ P G+P + S+PS TLF+ LS + +
Sbjct: 538 EALNSCNKREIEGRAIRLELQG--PRGSP---------NARSQPSKTLFVKGLSEDTTEE 586
Query: 312 NLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
L E F V RI T ET KGFG+V + S EDA +A E GE I+ V LD
Sbjct: 587 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKEAME--DGE-IDGNKVTLD 640
Query: 372 YSIPK 376
++ PK
Sbjct: 641 WAKPK 645
Score = 78.6 bits (192), Expect = 2e-14
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+ L + + + LK FE + R++ + G +S+G Y++F+ ++ AEK +E
Sbjct: 394 TLLAKNLPYKVTQDELKEVFEDAAEI---RLVSKDG--KSKGIAYIEFKTEADAEKTFEE 448
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
G EIDGR I+ + K G +D R K S S TL L NLS+ A + L E+
Sbjct: 449 KQGTEIDGRSISLYYTGEK--GQNQDYRGGK-NSTWSGESKTLVLSNLSYSATEETLQEV 505
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIPK 376
F K +++P + + + KG+ ++++ S EDA +A I R +RL+ P+
Sbjct: 506 FEK---ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561
Score = 66.2 bits (160), Expect = 9e-11
Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 24/206 (11%)
Query: 172 KRKAXXXXXXXXXXXPKTELAG-EPAT---IFVGRLSWSIDDEWLKTEFEPIGGVISARV 227
KRK K ++ G EP T +FVG L+++ LKT + V
Sbjct: 279 KRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAV 338
Query: 228 MYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKK 287
+ R +R +GYVDFE EKA+ E+ G ++ G I + K + RD R
Sbjct: 339 VDVR-IGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKDSKKERDAR--- 393
Query: 288 FGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGS 347
TL NL ++ +D L E+F EI V + + KG Y+++ +
Sbjct: 394 ----------TLLAKNLPYKVTQDELKEVFEDAAEIRLV-----SKDGKSKGIAYIEFKT 438
Query: 348 IEDATKAFEGLQGEYINNRPVRLDYS 373
DA K FE QG I+ R + L Y+
Sbjct: 439 EADAEKTFEEKQGTEIDGRSISLYYT 464
Score = 50.1 bits (118), Expect = 7e-06
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FV LS +E LK F+ G + AR++ +R T S+G+G+VDF + A++A
Sbjct: 573 TLFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKEA--- 626
Query: 257 MHGKEIDGRPINCDMSTSKPAG 278
M EIDG + D + K G
Sbjct: 627 MEDGEIDGNKVTLDWAKPKGEG 648
>At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 473
Score = 79.7 bits (195), Expect = 8e-15
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 20/190 (10%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G +SW D+E L+ F G V+ A +M +R T R+RG+G++ F D +E+ I +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDR--AKKFGDVPSEPSDT---------LFLGNLSF 306
H IDGR + + PRDD+ K+ S +F+G L
Sbjct: 68 H--IIDGRTVEAKKA------VPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPS 119
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
+ F ++G I V + T++P+GFG++ + S +DA +N +
Sbjct: 120 SITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLHKTFHELNGK 178
Query: 367 PVRLDYSIPK 376
V + ++PK
Sbjct: 179 LVEVKRAVPK 188
>7294907 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 918
Score = 79.3 bits (194), Expect = 1e-14
Identities = 48/185 (25%), Positives = 88/185 (46%), Gaps = 8/185 (4%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSR-----GYGYVDFEDKSYAE 251
T+F+ L++ E ++ F +G + + + R + R GYG++ F+ S AE
Sbjct: 680 TLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAE 739
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRD 311
A+K + IDG P+ S D ++ + + + N+ F+A
Sbjct: 740 HALKNLQLTHIDGNPVELKRSDRVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQYR 799
Query: 312 NLYEIFGKYGEIVSVRIPTHPET--EQPKGFGYVQYGSIEDATKAFEGLQGE-YINNRPV 368
+ +IF +GE+ S+RIP T + +GFG+V Y S +A +AF+ L ++ R +
Sbjct: 800 EVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAKRAFDALSASTHLYGRRL 859
Query: 369 RLDYS 373
L++S
Sbjct: 860 VLEWS 864
Score = 53.1 bits (126), Expect = 8e-07
Identities = 42/144 (29%), Positives = 65/144 (44%), Gaps = 20/144 (13%)
Query: 249 YAEKAIKEMHGKEIDGRPINCDMSTS-----KPAGAP---------RDDRAKKFGDVPSE 294
Y E A +++ K + G P+ KP P D RA+ D P E
Sbjct: 618 YLEWAPEQVFTKTLSGEPVIPKSEPKPKEEVKPEEKPIVNDAKPDEEDSRAEDADDEP-E 676
Query: 295 PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPK-----GFGYVQYGSIE 349
P+ TLFL NL+F+ ++ + + F G I +V I + E P+ G+G++Q+
Sbjct: 677 PNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSS 736
Query: 350 DATKAFEGLQGEYINNRPVRLDYS 373
A A + LQ +I+ PV L S
Sbjct: 737 VAEHALKNLQLTHIDGNPVELKRS 760
Score = 52.0 bits (123), Expect = 2e-06
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 241 YVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLF 300
+ DF +K+ KA K G+ + P D +K + D K D+ S +F
Sbjct: 316 FSDFTEKNKVTKASKS--GQPL--APAAVDAGNAK--WKHQQDSLSKEDDISE--SGRIF 367
Query: 301 LGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQG 360
NL++ ++L ++F ++G +V V +P T + KGFG V Y E A KAF L G
Sbjct: 368 FRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDG 427
Query: 361 EYINNRPVRL 370
+ R + L
Sbjct: 428 TDFHGRLLHL 437
>YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 887
Score = 78.6 bits (192), Expect = 2e-14
Identities = 51/186 (27%), Positives = 95/186 (50%), Gaps = 12/186 (6%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYE-----RGTDRSRGYGYVDFEDK 247
G +IF+ L++S ++ L F+ G + A+V + +G S G+G+V+F K
Sbjct: 660 GPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTK 719
Query: 248 SYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFE 307
A I M G IDG I +S + A + + K ++ S + + NL FE
Sbjct: 720 EQANAVIAAMDGTVIDGHKIQLKLS-HRQASQSGNTKTKS-----NKKSGKIIVKNLPFE 773
Query: 308 ADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
A R +++E+F +G++ SVR+P + + +GF +V++ ++A A + L G ++ R
Sbjct: 774 ATRKDVFELFNSFGQLKSVRVPKKFD-KSARGFAFVEFLLPKEAENAMDQLHGVHLLGRR 832
Query: 368 VRLDYS 373
+ + Y+
Sbjct: 833 LVMQYA 838
>SPBP22H7.02c [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 833
Score = 78.6 bits (192), Expect = 2e-14
Identities = 51/188 (27%), Positives = 94/188 (49%), Gaps = 16/188 (8%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDR-----SRGYGYVDFEDKS 248
+ ATI+V L++S E + F+P+ G +SA + + R S G+G+V+F+DK+
Sbjct: 617 DTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKA 676
Query: 249 YAEKAIKEMHGKEIDGRPINCDMS---TSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLS 305
A A+ M+G +DG + +S A + D +K G + + NL
Sbjct: 677 SAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKG-------TKILIKNLP 729
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
FEA + ++ + G YG++ SVR+P + +GF + ++ + +A A L+ ++
Sbjct: 730 FEATKKDVQSLLGAYGQLRSVRVPKKFD-RSARGFAFAEFVTAREAANAMRALKNTHLLG 788
Query: 366 RPVRLDYS 373
R + L Y+
Sbjct: 789 RHLVLQYA 796
Score = 54.7 bits (130), Expect = 3e-07
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAF--- 355
LFL NL++ D+L +FG +G++ V +P +T PKGF Y+ + +DA +A+
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 356 --EGLQGEYINNRPVRLDYSI 374
+ QG ++ P + SI
Sbjct: 385 DAKPFQGRLLHVLPAKARSSI 405
>Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 78.6 bits (192), Expect = 2e-14
Identities = 47/166 (28%), Positives = 88/166 (52%), Gaps = 6/166 (3%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYER---GTDRSRGYGYVDFEDKSYAEKA 253
T+F+ L++ +E LK F +G V S + ++ G S G+G+V++ A+KA
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+K++ G +DG + ++ S+ A P A+K + + + + N+ F+A +
Sbjct: 791 LKQLQGHVVDGHKL--EVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREI 848
Query: 314 YEIFGKYGEIVSVRIPTH-PETEQPKGFGYVQYGSIEDATKAFEGL 358
E+F +GE+ +VR+P T +GFG+V + + +DA +AF L
Sbjct: 849 RELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 58.9 bits (141), Expect = 1e-08
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 238 GYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPA--GAPRDDRAKKFGDVPSE- 294
GY +VDF ++ ++A+K + + + GR I + P GAP++ G + E
Sbjct: 334 GYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGEN 392
Query: 295 -------PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGS 347
S LF+ NL + + ++L ++F KYG + + P T++PKGF ++ +
Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452
Query: 348 IEDATKAFEGLQGEYINNR 366
E A KA+ + G+ R
Sbjct: 453 PEHAVKAYSEVDGQVFQGR 471
>Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 78.6 bits (192), Expect = 2e-14
Identities = 47/166 (28%), Positives = 88/166 (52%), Gaps = 6/166 (3%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYER---GTDRSRGYGYVDFEDKSYAEKA 253
T+F+ L++ +E LK F +G V S + ++ G S G+G+V++ A+KA
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+K++ G +DG + ++ S+ A P A+K + + + + N+ F+A +
Sbjct: 791 LKQLQGHVVDGHKL--EVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREI 848
Query: 314 YEIFGKYGEIVSVRIPTH-PETEQPKGFGYVQYGSIEDATKAFEGL 358
E+F +GE+ +VR+P T +GFG+V + + +DA +AF L
Sbjct: 849 RELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 58.9 bits (141), Expect = 1e-08
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 238 GYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPA--GAPRDDRAKKFGDVPSE- 294
GY +VDF ++ ++A+K + + + GR I + P GAP++ G + E
Sbjct: 334 GYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGEN 392
Query: 295 -------PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGS 347
S LF+ NL + + ++L ++F KYG + + P T++PKGF ++ +
Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452
Query: 348 IEDATKAFEGLQGEYINNR 366
E A KA+ + G+ R
Sbjct: 453 PEHAVKAYSEVDGQVFQGR 471
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 78.6 bits (192), Expect = 2e-14
Identities = 50/184 (27%), Positives = 94/184 (50%), Gaps = 15/184 (8%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+ ATI+VG L + + L G V+S + +R T +G+G+V+F + A+ A
Sbjct: 21 QDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 80
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
IK ++ ++ G+PI + +++ +K DV + +F+GNL E D L
Sbjct: 81 IKILNMIKLYGKPIKVNKASAH----------EKNMDVGA----NIFVGNLDPEVDEKLL 126
Query: 314 YEIFGKYGEIVSV-RIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
Y+ F +G I+ V +I ++ KGF ++ + S E + A E + G+++ NR + + Y
Sbjct: 127 YDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 186
Query: 373 SIPK 376
+ +
Sbjct: 187 AFKR 190
>At4g13850 [R] KOG0118 FOG: RRM domain
Length = 158
Score = 78.2 bits (191), Expect = 2e-14
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LSW DD L+ F G V+ A+V+ +R T RSRG+G+V+F D+ A AI EM
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 258 HGKEIDGRPINCDMSTSKPAGAPR 281
GKE++GR I + + +P+ APR
Sbjct: 97 DGKELNGRHIRVNPANDRPS-APR 119
Score = 52.4 bits (124), Expect = 1e-06
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 296 SDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAF 355
S LF+G LS+ D +L + F +G++V ++ ET + +GFG+V + AT A
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 356 EGLQGEYINNRPVRLD 371
+ G+ +N R +R++
Sbjct: 94 SEMDGKELNGRHIRVN 109
>CE29337 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 77.8 bits (190), Expect = 3e-14
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+P +F+G LSW E L+ F G V VM + T R+RG+G++ F D S +K
Sbjct: 43 DPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKV 102
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+ E+DG+ I+ ++ K A + KK +F+G LS + +++
Sbjct: 103 LNNRE-HELDGKKIDPKVAFPKRTQAKLVTKTKK-----------VFIGGLSATSTLEDM 150
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
+ F YG++ + T++ +GFG+V + S E A K E + IN + V +
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE-IHFHEINGKMVECKKA 209
Query: 374 IPK 376
PK
Sbjct: 210 QPK 212
Score = 57.0 bits (136), Expect = 6e-08
Identities = 35/115 (30%), Positives = 59/115 (50%), Gaps = 4/115 (3%)
Query: 188 KTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDK 247
+ +L + +F+G LS + E +K FE G V A +M+++ T R RG+G+V F+
Sbjct: 126 QAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSD 185
Query: 248 SYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAP---RDDRAKKFGDVPSEPSDTL 299
A+K + E+H EI+G+ + C + K P RA ++ P +TL
Sbjct: 186 EVADK-VCEIHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLYGMPPETL 239
>YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 534
Score = 77.4 bits (189), Expect = 4e-14
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 188 KTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDK 247
K +L+ E +F+G L+W ++ L+ F G V ++M + T RSRG+G++ FE
Sbjct: 151 KADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP 210
Query: 248 SYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFE 307
S ++ +K H +DG+ I+ PRD++ K + +F+G + +
Sbjct: 211 SSVDEVVKTQH--ILDGKVID------PKRAIPRDEQDK---------TGKIFVGGIGPD 253
Query: 308 ADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIE 349
E F ++G I+ ++ +T Q +GFG+V Y S +
Sbjct: 254 VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>Hs4758542 [R] KOG0118 FOG: RRM domain
Length = 284
Score = 77.4 bits (189), Expect = 4e-14
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 18/160 (11%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LSW + LK F G V+ + + T RSRG+G++ F+D + EK + +
Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 129
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA-DRDNLYEI 316
+ +DGR I+ K A A + D KK +F+G L+ E+ + + E
Sbjct: 130 EHR-LDGRVID-----PKKAMAMKKDPVKK-----------IFVGGLNPESPTEEKIREY 172
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
FG++GEI ++ +P P+ + +GF ++ + E K E
Sbjct: 173 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212
>Hs14110404 [R] KOG0118 FOG: RRM domain
Length = 331
Score = 77.4 bits (189), Expect = 4e-14
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 18/160 (11%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LSW + LK F G V+ + + T RSRG+G++ F+D + EK + +
Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 129
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEA-DRDNLYEI 316
+ +DGR I+ K A A + D KK +F+G L+ E+ + + E
Sbjct: 130 EHR-LDGRVID-----PKKAMAMKKDPVKK-----------IFVGGLNPESPTEEKIREY 172
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
FG++GEI ++ +P P+ + +GF ++ + E K E
Sbjct: 173 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 77.4 bits (189), Expect = 4e-14
Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 187 PKTELAGE----PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYV 242
P T + G + +FVG LSW DD LK F G V A V+ +R T RSRG+G+V
Sbjct: 22 PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
Query: 243 DFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPR 281
F + A AIKEM GKE++GR I +++T + + APR
Sbjct: 82 SFSCEDSANNAIKEMDGKELNGRQIRVNLATER-SSAPR 119
Score = 52.4 bits (124), Expect = 1e-06
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 296 SDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAF 355
S LF+G LS+ D +L + F +GE+ + ET + +GFG+V + + A A
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 356 EGLQGEYINNRPVRLD 371
+ + G+ +N R +R++
Sbjct: 94 KEMDGKELNGRQIRVN 109
>At1g17370 [R] KOG0118 FOG: RRM domain
Length = 419
Score = 77.4 bits (189), Expect = 4e-14
Identities = 56/196 (28%), Positives = 93/196 (46%), Gaps = 25/196 (12%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG LS + D L T F ARVM+++ T RSRG+G+V F ++ A+ AI E+
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 258 HGKEIDGRPINCDMST------------------SKPAGAPRDDRAKKFGDVPSEPSD-- 297
GK + R I C+ +T +G D + G+ P +
Sbjct: 201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYT 260
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE- 356
T+++GNL+ E + +L+ F G V + ++ KGFG+V+Y + +A A +
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEV----RVQRDKGFGFVRYSTHVEAALAIQM 316
Query: 357 GLQGEYINNRPVRLDY 372
G Y++ R ++ +
Sbjct: 317 GNTHSYLSGRQMKCSW 332
Score = 66.6 bits (161), Expect = 7e-11
Identities = 42/177 (23%), Positives = 88/177 (48%), Gaps = 16/177 (9%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+++VG + + + L+ F G V S +++ + + YG+V + D+ A AI
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILS 110
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
++G+ + G+PI + + A R+D + F +F+G+LS E L+
Sbjct: 111 LNGRHLFGQPIKVNWAY---ASGQREDTSSHFN---------IFVGDLSPEVTDAMLFTC 158
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
F Y R+ +T + +GFG+V + + +DA A + + G+++ +R +R +++
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 77.0 bits (188), Expect = 5e-14
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A++++G L + + L +F G V+S RV + + S GY YV+F+ + AE+A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ + I GRP+ S RD A++ G + +F+ NL D ++Y+
Sbjct: 117 TMNFEVIHGRPMRIMWS-------QRDPAARRAG------NGNIFIKNLDRVIDNKSVYD 163
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G I+S ++ T E KG+G+V + + A A E + G ++++ V
Sbjct: 164 TFSLFGNILSCKVATDDEGNS-KGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215
Score = 69.3 bits (168), Expect = 1e-11
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 10/184 (5%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P AG IF+ L ID++ + F G ++S +V + S+GYG+V FE
Sbjct: 137 PAARRAGN-GNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFET 194
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSF 306
+ A+ AI++++G + + + PR R K+ G+ + ++ +F+ N
Sbjct: 195 EHSAQTAIEKVNGMLLSDKKVYVGKFQ------PRAQRMKELGESGLKYTN-VFVKNFGE 247
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
D++ L +F K+GEI S + T + + PKGFG+V + + A +A E L +
Sbjct: 248 HLDQEKLSAMFSKFGEITSAVVMTDAQGK-PKGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Query: 367 PVRL 370
+L
Sbjct: 307 DCKL 310
Score = 63.9 bits (154), Expect = 5e-10
Identities = 46/178 (25%), Positives = 84/178 (46%), Gaps = 11/178 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FV +D E L F G + SA VM + + +G+G+V F D+ A +A++++
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 258 HGKEIDGRPINCDMS-------TSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADR 310
+ ++G +C +S + + A R A K V L++ N+ + +
Sbjct: 299 NDSILEG--TDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLND 356
Query: 311 DNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
D L + F +G I S ++ E + KGFG+V + E+AT A + + I +P+
Sbjct: 357 DGLRDHFSSFGTITSAKVMV-DENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPL 413
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 77.0 bits (188), Expect = 5e-14
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A++++G L + + L +F G V+S RV + + S GY YV+F+ + AE+A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ + I GRP+ S RD A++ G + +F+ NL D ++Y+
Sbjct: 117 TMNFEVIHGRPMRIMWS-------QRDPAARRAG------NGNIFIKNLDRVIDNKSVYD 163
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G I+S ++ T E KG+G+V + + A A E + G ++++ V
Sbjct: 164 TFSLFGNILSCKVATDDEGNS-KGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215
Score = 69.3 bits (168), Expect = 1e-11
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 10/184 (5%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P AG IF+ L ID++ + F G ++S +V + S+GYG+V FE
Sbjct: 137 PAARRAGN-GNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFET 194
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSF 306
+ A+ AI++++G + + + PR R K+ G+ + ++ +F+ N
Sbjct: 195 EHSAQTAIEKVNGMLLSDKKVYVGKFQ------PRAQRMKELGESGLKYTN-VFVKNFGE 247
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
D++ L +F K+GEI S + T + + PKGFG+V + + A +A E L +
Sbjct: 248 HLDQEKLSAMFSKFGEITSAVVMTDAQGK-PKGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Query: 367 PVRL 370
+L
Sbjct: 307 DCKL 310
Score = 63.9 bits (154), Expect = 5e-10
Identities = 46/178 (25%), Positives = 84/178 (46%), Gaps = 11/178 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FV +D E L F G + SA VM + + +G+G+V F D+ A +A++++
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 258 HGKEIDGRPINCDMS-------TSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADR 310
+ ++G +C +S + + A R A K V L++ N+ + +
Sbjct: 299 NDSILEG--TDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLND 356
Query: 311 DNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
D L + F +G I S ++ E + KGFG+V + E+AT A + + I +P+
Sbjct: 357 DGLRDHFSSFGTITSAKVMV-DENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPL 413
>At1g48920 [K] KOG4210 Nuclear localization sequence binding protein
Length = 557
Score = 77.0 bits (188), Expect = 5e-14
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 11/178 (6%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P T AG T+F LS++I+ ++ F+ G V+ R R RG+G+V+F
Sbjct: 288 PSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFAS 347
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSK------PAGAPRDDRAKKFGDVPSEPSDTL- 299
A+KA+ E HG+ + GR I D++ + PA P+ + GD E +
Sbjct: 348 SEEAQKAL-EFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVK 406
Query: 300 -FLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
F +LS + ++ L E F GEI +V +P +T KG Y+++ E KA E
Sbjct: 407 GFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKALE 462
Score = 58.5 bits (140), Expect = 2e-08
Identities = 34/84 (40%), Positives = 48/84 (56%), Gaps = 5/84 (5%)
Query: 292 PSEP----SDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGS 347
PS P S TLF NLSF +R ++ F + GE+V VR T+ + +GFG+V++ S
Sbjct: 288 PSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFAS 347
Query: 348 IEDATKAFEGLQGEYINNRPVRLD 371
E+A KA E G + R +RLD
Sbjct: 348 SEEAQKALE-FHGRPLLGREIRLD 370
>SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 474
Score = 76.3 bits (186), Expect = 9e-14
Identities = 46/183 (25%), Positives = 88/183 (47%), Gaps = 18/183 (9%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E +F+G L+W D+ L+ FE G V+ VM + T RSRG+G++ F++ +
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+ + H +DG+ I+ PR+++ E + +F+G + + +
Sbjct: 221 MSKEH--HLDGKIID------PKRAIPREEQ---------EKTAKMFVGGVPGDCTEEEF 263
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
F ++G ++ + +T +P+GFG+V Y + E A +A I+ +PV + +
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEVKRA 322
Query: 374 IPK 376
PK
Sbjct: 323 TPK 325
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 75.5 bits (184), Expect = 2e-13
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 6/177 (3%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+F +L+ I L+ F +G V R++ +R + RS+G YV+F D S AI
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG- 212
Query: 257 MHGKEIDGRPINCDMSTS-KPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
+ G+ + G PI S + K A + +K P L++G+L F D L
Sbjct: 213 LTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR----LYVGSLHFNITEDMLRG 268
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
IF +G I S+++ ET + KG+G++ + E A KA E L G + RP+++ +
Sbjct: 269 IFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 325
Score = 66.2 bits (160), Expect = 9e-11
Identities = 29/81 (35%), Positives = 52/81 (63%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
P ++VG L ++I ++ L+ FEP G + S ++M + T RS+GYG++ F D A+KA+
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 255 KEMHGKEIDGRPINCDMSTSK 275
++++G E+ GRP+ T +
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329
>At3g18610 [K] KOG4210 Nuclear localization sequence binding protein
Length = 636
Score = 75.5 bits (184), Expect = 2e-13
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVM-YERGTDRSRGYGYVDFE 245
P + G T+F G LS+ I ++ F+ G V+ R+ ++ G+ +GYG+++F
Sbjct: 375 PTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGS--FKGYGHIEFA 432
Query: 246 DKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLS 305
A+KA+ EM+GK + GR + D++ + G PR+ + G+ S T+++ S
Sbjct: 433 SPEEAQKAL-EMNGKLLLGRDVRLDLANER--GTPRNSNPGRKGE--GSQSRTIYVRGFS 487
Query: 306 FEADRDN----LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE---GL 358
D L F K GE+ V +PT ET +GF Y+ D T F+ L
Sbjct: 488 SSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI------DLTSGFDEALQL 541
Query: 359 QGEYINNRPVRLDYSIPK 376
G I + ++ S P+
Sbjct: 542 SGSEIGGGNIHVEESRPR 559
>At1g17640 [R] KOG0118 FOG: RRM domain
Length = 369
Score = 75.5 bits (184), Expect = 2e-13
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
P +FVG +SW E F G V+ + +M +R T RG+G+V F D + AEK +
Sbjct: 65 PGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVL 124
Query: 255 KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
+E H ID R + D+ + P G +D K + +F+G L + D L
Sbjct: 125 EEDH--VIDDRKV--DLKRTLPRG-DKDTDIKAV-----SKTRKIFVGGLPPLLEEDELK 174
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSI 374
F YG+I+ +I T + +GFG+V + + + + F + + ++ V + +
Sbjct: 175 NYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAE 234
Query: 375 PK 376
PK
Sbjct: 235 PK 236
Score = 52.4 bits (124), Expect = 1e-06
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFE-----DKSYAEK 252
IFVG L ++++ LK F G +I ++MY+ T RSRG+G+V F+ D+ +++
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 253 AIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRD- 311
+ E+ K++ ++ ++P RD+ + +G + + G +A+ D
Sbjct: 219 KVHELGDKQV-------EIKRAEPKRTGRDNSFRSYGASGKYDQEDSYSG----KANEDY 267
Query: 312 NLYEIFGKYG 321
++Y +G YG
Sbjct: 268 SMYSGYGGYG 277
>Hs4885423 [R] KOG0118 FOG: RRM domain
Length = 420
Score = 74.7 bits (182), Expect = 3e-13
Identities = 45/159 (28%), Positives = 78/159 (48%), Gaps = 16/159 (10%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LSW + L G V+ + + T RSRG+G+V F+D + +K + E+
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL-EL 208
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
++DG+ I+ P+ +A K EP +F+G LS + + + E F
Sbjct: 209 KEHKLDGKLID-----------PKRAKALK----GKEPPKKVFVGGLSPDTSEEQIKEYF 253
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
G +GEI ++ +P +T + +GF ++ Y E K E
Sbjct: 254 GAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 74.7 bits (182), Expect = 3e-13
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A + +F+G LSWS+D++ LK F G V R+ Y++G+ RSRG+G+VDF ++ A
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAP 280
A M GK + GRP+ + + G P
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALERVRGGP 125
Score = 60.5 bits (145), Expect = 5e-09
Identities = 26/84 (30%), Positives = 48/84 (56%)
Query: 293 SEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDAT 352
+ PS LF+G LS+ D +L + F +GE+ VRI + + +GFG+V + DA
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 353 KAFEGLQGEYINNRPVRLDYSIPK 376
A + + G+ + RP+R+ +++ +
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALER 120
>At2g41060 [R] KOG0118 FOG: RRM domain
Length = 451
Score = 74.7 bits (182), Expect = 3e-13
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFV L W + L F+ G + + + ++ + +S+GYG++ F+ +S A A+K+
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 258 HGKEIDGRPINCDMSTSKPA-GAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
K+I R C +++ P G P A+ F P +++ N+S + D L E
Sbjct: 190 Q-KKIGTRMTACQLASIGPVQGNPVVAPAQHFN--PENVQRKIYVSNVSADIDPQKLLEF 246
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
F ++GEI + T +PKGF Y S+E A KA E
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>7301687 [R] KOG0118 FOG: RRM domain
Length = 365
Score = 74.7 bits (182), Expect = 3e-13
Identities = 52/181 (28%), Positives = 86/181 (46%), Gaps = 15/181 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L + DE LK FE G ++ VM + T RSRG+G++ + S ++A K
Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSR 92
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT--LFLGNLSFEADRDNLYE 315
K IDGR + PR D D P+ + LF+G L + D ++ +
Sbjct: 93 PHK-IDGRVV------EPKRAVPRQDI-----DSPNAGATVKKLFVGALKDDHDEQSIRD 140
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIP 375
F +G IV + I ET + +GF +V++ + K Q + +N + V + ++P
Sbjct: 141 YFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKALP 199
Query: 376 K 376
K
Sbjct: 200 K 200
>7301686 [R] KOG0118 FOG: RRM domain
Length = 363
Score = 74.7 bits (182), Expect = 3e-13
Identities = 52/181 (28%), Positives = 86/181 (46%), Gaps = 15/181 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L + DE LK FE G ++ VM + T RSRG+G++ + S ++A K
Sbjct: 32 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSR 91
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT--LFLGNLSFEADRDNLYE 315
K IDGR + PR D D P+ + LF+G L + D ++ +
Sbjct: 92 PHK-IDGRVV------EPKRAVPRQDI-----DSPNAGATVKKLFVGALKDDHDEQSIRD 139
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIP 375
F +G IV + I ET + +GF +V++ + K Q + +N + V + ++P
Sbjct: 140 YFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKALP 198
Query: 376 K 376
K
Sbjct: 199 K 199
>Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 407
Score = 74.3 bits (181), Expect = 3e-13
Identities = 44/167 (26%), Positives = 79/167 (46%), Gaps = 6/167 (3%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A E +FVG L WS E L++ F G V+ +M ++ T++SRG+G+V F+D +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 252 KAIKE----MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFE 307
+ + G+ ID +P C +P + +K S+ +F+G +
Sbjct: 66 TVLASRPHTLDGRNIDPKP--CTPRGMQPERTRPKEGWQKGPRSDYSKSNKIFVGGIPHN 123
Query: 308 ADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
L E F K+G + V + E ++P+GFG++ + + +A
Sbjct: 124 CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
>Hs20373175 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 328
Score = 74.3 bits (181), Expect = 3e-13
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+P +F+G LSW + L+ F G + VM + T RSRG+G+V F D + +K
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+ + H E+D + I+ ++ + A R KK +F+G LS +++
Sbjct: 79 LGQPH-HELDSKTIDPKVAFPRRAQPKMVTRTKK-----------IFVGGLSANTVVEDV 126
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
+ F ++G++ + T + +GFG+V + + ED + + INN+ V +
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN-EDVVEKVCEIHFHEINNKMVECKKA 185
Query: 374 IPK 376
PK
Sbjct: 186 QPK 188
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 73.9 bits (180), Expect = 4e-13
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 199 FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMH 258
FVG L+W+ +DE L+ F G VI ++++ +R + RSRG+G+V F+D+ AI+EM+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 259 GKEIDGRPINCDMSTSKPAG 278
GKE+DGR I + + S+ +G
Sbjct: 69 GKELDGRVITVNEAQSRGSG 88
>Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 362
Score = 73.6 bits (179), Expect = 6e-13
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
+P +F+G LSW E L+ F G V VM + T RSRG+G+V F D++ +K
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
+ + E+D + I+ ++ + A R KK +F+G LS +++
Sbjct: 78 LAQSR-HELDSKTIDPKVAFPRRAQPKMVTRTKK-----------IFVGGLSVNTTVEDV 125
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
+ F ++G++ + T + +GFG+V + S ED + + INN+ V +
Sbjct: 126 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNKMVECKKA 184
Query: 374 IPK 376
PK
Sbjct: 185 QPK 187
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 73.2 bits (178), Expect = 7e-13
Identities = 39/176 (22%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++VG L +I ++ LK F+ G + + ++M ++ +++ Y +V++ A A++ +
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTL 135
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+GK+I+ + + + + S+ + LF+G+L+ D + L F
Sbjct: 136 NGKQIENNIVKINWAFQSQQSS-------------SDDTFNLFVGDLNVNVDDETLRNAF 182
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
+ +S + +T +G+G+V + S +DA A + +QG+ +N RP+R++++
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 62.8 bits (151), Expect = 1e-09
Identities = 27/78 (34%), Positives = 48/78 (60%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG L+ ++DDE L+ F+ +S VM++ T SRGYG+V F + A+ A+ M
Sbjct: 164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 223
Query: 258 HGKEIDGRPINCDMSTSK 275
G++++GRP+ + + +
Sbjct: 224 QGQDLNGRPLRINWAAKR 241
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 73.2 bits (178), Expect = 7e-13
Identities = 49/183 (26%), Positives = 88/183 (47%), Gaps = 3/183 (1%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
+T+FV L++ + L F +G + A V+ T +RGYG+V F A++A K
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKF-GDVPSEPSDTLFLGNLSFEADR-DNL 313
E+ K++ GR + D +T + D+ K + + L + NL + + +L
Sbjct: 65 ELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
F K+G++ ++IPT GF +V + A +A L G I+ RP+ +D++
Sbjct: 125 EPHFSKFGKVREIKIPTKGGGRM-CGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Query: 374 IPK 376
+ K
Sbjct: 184 VSK 186
Score = 63.5 bits (153), Expect = 6e-10
Identities = 28/81 (34%), Positives = 52/81 (63%)
Query: 296 SDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAF 355
+ TLF+ NL+F+ +D+L F G I + T+PET + +G+G+V + +EDA +A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 356 EGLQGEYINNRPVRLDYSIPK 376
+ L+ + ++ R +RLD++ P+
Sbjct: 64 KELKNKKLHGRILRLDFATPR 84
>Hs14110420 [R] KOG0118 FOG: RRM domain
Length = 355
Score = 73.2 bits (178), Expect = 7e-13
Identities = 44/159 (27%), Positives = 78/159 (48%), Gaps = 16/159 (10%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LSW + LK F G V+ + + T RSRG+G+V F++ +K + +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
K ++G+ I+ P+ +A K EP +F+G LS + + + E F
Sbjct: 159 EHK-LNGKVID-----------PKRAKAMK----TKEPVKKIFVGGLSPDTPEEKIREYF 202
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
G +GE+ S+ +P +T + +GF ++ + E K E
Sbjct: 203 GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>Hs14110417 [R] KOG0118 FOG: RRM domain
Length = 336
Score = 73.2 bits (178), Expect = 7e-13
Identities = 44/159 (27%), Positives = 78/159 (48%), Gaps = 16/159 (10%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LSW + LK F G V+ + + T RSRG+G+V F++ +K + +
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
K ++G+ I+ P+ +A K EP +F+G LS + + + E F
Sbjct: 140 EHK-LNGKVID-----------PKRAKAMK----TKEPVKKIFVGGLSPDTPEEKIREYF 183
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
G +GE+ S+ +P +T + +GF ++ + E K E
Sbjct: 184 GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 222
>Hs14110414 [R] KOG0118 FOG: RRM domain
Length = 306
Score = 73.2 bits (178), Expect = 7e-13
Identities = 44/159 (27%), Positives = 78/159 (48%), Gaps = 16/159 (10%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LSW + LK F G V+ + + T RSRG+G+V F++ +K + +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
K ++G+ I+ P+ +A K EP +F+G LS + + + E F
Sbjct: 159 EHK-LNGKVID-----------PKRAKAMK----TKEPVKKIFVGGLSPDTPEEKIREYF 202
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
G +GE+ S+ +P +T + +GF ++ + E K E
Sbjct: 203 GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>At2g21660 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 72.8 bits (177), Expect = 1e-12
Identities = 33/80 (41%), Positives = 55/80 (68%)
Query: 199 FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMH 258
FVG L+W+ DD L+T F G VI ++++ +R T RSRG+G+V F+D+ + AI+ M+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 259 GKEIDGRPINCDMSTSKPAG 278
G+++DGR I + + S+ +G
Sbjct: 71 GQDLDGRSITVNEAQSRGSG 90
>At3g26420 [R] KOG0118 FOG: RRM domain
Length = 245
Score = 72.4 bits (176), Expect = 1e-12
Identities = 31/85 (36%), Positives = 54/85 (63%)
Query: 199 FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMH 258
F+G L+W+ D L+ FE G ++ A+V+ ++ + RSRG+G++ F++K ++AI M+
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 259 GKEIDGRPINCDMSTSKPAGAPRDD 283
G ++DGR I D + GA RD+
Sbjct: 70 GMDLDGRTITVDKAQPHQGGAGRDN 94
>Hs7661952 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 963
Score = 71.6 bits (174), Expect = 2e-12
Identities = 54/181 (29%), Positives = 88/181 (47%), Gaps = 9/181 (4%)
Query: 197 TIFVGRLSWSID--DEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
T+FV L +S+ D L+ FE G V+ R ++ D RGY YV+F+++ A +A+
Sbjct: 705 TVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGD-FRGYCYVEFKEEKSALQAL 763
Query: 255 KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
EM K ++GRP M S ++ K F S LF+ L F ++ L
Sbjct: 764 -EMDRKSVEGRP----MFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELE 818
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSI 374
EI +G + +R+ T+ +PKG YV+Y + A++A + G I +++ S
Sbjct: 819 EICKAHGTVKDLRLVTN-RAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 877
Query: 375 P 375
P
Sbjct: 878 P 878
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 71.6 bits (174), Expect = 2e-12
Identities = 46/173 (26%), Positives = 84/173 (47%), Gaps = 14/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L +++ L +F G V+S RV + T S GY YV+F+ + AE+A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
M+ + + G+P+ S PA + + +F+ NL D ++Y+
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPA-------------MRRSGAGNIFIKNLDKVIDNKSIYD 138
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G I+S ++ E KG+G+V + + E A A + + G + + V
Sbjct: 139 TFSLFGNILSCKVAI-DEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKV 190
Score = 70.1 bits (170), Expect = 6e-12
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%)
Query: 190 ELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSY 249
E A + ++V + E L+ F G + S VM G +S+G+G+V F +
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEE 264
Query: 250 AEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSD-----TLFLGNL 304
AE A++ +H I+G + + ++ + KK +E L++ NL
Sbjct: 265 AETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNL 324
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYIN 364
D D L + F YG I S ++ T E + KGFG+V + E+AT A + + +
Sbjct: 325 DETVDDDGLKKQFESYGNITSAKVMT-DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVC 383
Query: 365 NRPV 368
++P+
Sbjct: 384 SKPL 387
Score = 67.0 bits (162), Expect = 5e-11
Identities = 44/173 (25%), Positives = 87/173 (49%), Gaps = 10/173 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IF+ L ID++ + F G ++S +V + S+GYG+V FE + A+ AI+++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKV 180
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G + G+ + PR R ++ G+ + ++ +++ N +++ L ++F
Sbjct: 181 NGMLLAGKKVFVGKFQ------PRAQRNRELGETAKQFTN-VYVKNFGDHYNKETLEKLF 233
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRL 370
K+G I S + T + KGFG+V + + E+A A + L I ++L
Sbjct: 234 AKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKL 284
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 71.6 bits (174), Expect = 2e-12
Identities = 50/174 (28%), Positives = 88/174 (49%), Gaps = 10/174 (5%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P T L+G+ IF+ L SID++ L F G ++S +V + T RS+GYG+V FE
Sbjct: 128 PSTRLSGK-GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK 185
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSF 306
+ A+ AI +++G ++ + + R +RA+ + P+ +++ NL
Sbjct: 186 EESAQAAIDKLNGMLMNDKQVFVGHFIR------RQERARD-ENTPTPRFTNVYVKNLPK 238
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQG 360
E D L + FGK+G ++S + ++ + FG+V + E A A E + G
Sbjct: 239 EIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNG 291
Score = 69.7 bits (169), Expect = 8e-12
Identities = 44/174 (25%), Positives = 84/174 (47%), Gaps = 5/174 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V L I ++ L+ F G + SA VM ++ + SR +G+V+FE A A+++M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 258 HGKEIDGRPI---NCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
+G + + + + R ++ L+L NL D + L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
E+F +YG + S ++ +P+ +GFG+V Y + E+A +A + G+ I +P+
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402
Score = 67.4 bits (163), Expect = 4e-11
Identities = 47/179 (26%), Positives = 88/179 (48%), Gaps = 15/179 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
++++ G L + + L F+ + V+S RV ++ RS GY Y++F + + A +A++
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
++ + RPI +S P+ R G++ F+ NL D L+E
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPS-----TRLSGKGNI--------FIKNLDASIDNKALFE 154
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSI 374
F +G I+S ++ T + KG+G+VQ+ E A A + L G +N++ V + + I
Sbjct: 155 TFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFI 212
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A +++ L S+DDE LK F G V S++VM SRG+G+V + + A +A+
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALS 390
Query: 256 EMHGKEIDGRPINCDMSTSK 275
EM+GK I +P+ ++ K
Sbjct: 391 EMNGKMIGRKPLYIALAQRK 410
>CE17059 [R] KOG0118 FOG: RRM domain
Length = 346
Score = 71.2 bits (173), Expect = 3e-12
Identities = 46/149 (30%), Positives = 75/149 (49%), Gaps = 12/149 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG L+ + D+ ++ + G + VM + T RSRG+G+V F K+ + A+K+
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ- 83
Query: 258 HGKEIDGRPINCDMSTSKPAGA-PRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
RP D T P A PRDD+ + +V ++ L++ + + D L E
Sbjct: 84 -------RPHIIDGKTVDPKRAVPRDDKNRSESNVSTK---RLYVSGVREDHTEDMLTEY 133
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQY 345
F KYG + I T++P+GFG+V +
Sbjct: 134 FTKYGTVTKSEIILDKATQKPRGFGFVTF 162
>At5g41690 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 599
Score = 71.2 bits (173), Expect = 3e-12
Identities = 48/199 (24%), Positives = 97/199 (48%), Gaps = 19/199 (9%)
Query: 190 ELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSY 249
E A T+FV L + + F+ +G V+ +++ + G G+V+F +
Sbjct: 49 EAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNL-KGKLVGCGFVEFASVNE 107
Query: 250 AEKAIKEMHGKEIDGRPINCDMSTSKPAGAP-----------RDDRAKKFGDV------P 292
AE+A+++ +G+ +D I D++ K P +D R + + P
Sbjct: 108 AEEALQKKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPP 167
Query: 293 SEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDAT 352
+ + LF+ NLS + ++++ F GE+VS+R+ + E + G+G+V++ S ++
Sbjct: 168 NSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHV-GYGFVEFASADETK 226
Query: 353 KAFEGLQGEYINNRPVRLD 371
KA E GEY+++ + +D
Sbjct: 227 KALENKNGEYLHDHKIFID 245
Score = 59.3 bits (142), Expect = 1e-08
Identities = 47/191 (24%), Positives = 86/191 (44%), Gaps = 19/191 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FV LS + F +G V+S R+M + GYG+V+F +KA++
Sbjct: 174 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNH-EGKHVGYGFVEFASADETKKALENK 232
Query: 258 HGKEIDGRPINCDMSTSKP---------------AGAPRDDRAKKFGDVPSEPSDTLFLG 302
+G+ + I D++ + P D+ +F + TLF+
Sbjct: 233 NGEYLHDHKIFIDVAKTAPYPPGPNYEDYLRRESLPIDEDETPPEFVEAVGVRKKTLFVA 292
Query: 303 NLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDA--TKAFEGLQG 360
+LS + + ++ F GE+V VR+ + T + G +V++GS +A +A E G
Sbjct: 293 HLSRKTEITHIINFFKDVGEVVHVRLILN-HTGKHVGCAFVEFGSANEAKMVRALETKNG 351
Query: 361 EYINNRPVRLD 371
EY+N+ + L+
Sbjct: 352 EYLNDCKIFLE 362
>At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 71.2 bits (173), Expect = 3e-12
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P+ + + T+F ++ + + F G V R++ +R + RS+G GY++F D
Sbjct: 159 PEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSE-PSDT-LFLGNL 304
AI + G+ G+P+ KP+ A ++ V P+D L++GNL
Sbjct: 219 VMSVPMAIA-LSGQLFLGQPVMV-----KPSEAEKNLAQSNSTTVGGTGPADRKLYVGNL 272
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGE 361
F L +IF +G + V++P PET Q KGFG++Q+ +E + A L G+
Sbjct: 273 HFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGK 329
>ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 293
Score = 70.9 bits (172), Expect = 4e-12
Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+F+ +S+ + + LK+E E IG V + R++G+GYV+F + +KA+K
Sbjct: 88 TVFIKGISYDLTEYDLKSEMEKIGKVARVGIPMTNDHKRNKGFGYVEFCKEEDVKKALK- 146
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
+ G GR + +M+ PR ++ + T+++ N+ +E D+ +L +
Sbjct: 147 LDGTVFLGREVVVNMAH------PRANKERH----------TIYVSNIPYECDKRDLKKY 190
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIED 350
F GE+V + +P + + KG+G+V +G+ ED
Sbjct: 191 FEGMGEVVGMSLPYDRDNNRLKGYGFVDFGNKED 224
>At3g53460 [R] KOG0118 FOG: RRM domain
Length = 342
Score = 70.9 bits (172), Expect = 4e-12
Identities = 31/85 (36%), Positives = 51/85 (59%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
+G ++VG LSW +DD L+ F G V+ ARV+Y+R + RS+G+G+V +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKP 276
KAI ++G ++DGR I + ++P
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEARP 337
Score = 61.6 bits (148), Expect = 2e-09
Identities = 32/97 (32%), Positives = 49/97 (49%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LS+++D L FE G V V+Y++ T RSRG+G+V + E A ++
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSE 294
+G E +GRP+ + P R + G SE
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSE 197
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 70.9 bits (172), Expect = 4e-12
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V L + D LK F G + SA VM + G +SR +G+V+FE A AI++M
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRA-----KKFGDVPSEPSDTLFLGNLSFEADRDN 312
+G +D + ++ + K D +A K D+ + L++ NL D
Sbjct: 180 NGVVVDEKELHVGRAQRK-TNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTK 238
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
L E+F ++G I S KG G+V++ + E+A+KA + G+ + N+P+
Sbjct: 239 LEELFSEFGTITSCN----------KGVGFVEFSTSEEASKAMLKMNGKMVGNKPI 284
Score = 52.4 bits (124), Expect = 1e-06
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P ++G +FV L SID++ L F G V+S +V + + S+GYG+V F
Sbjct: 23 PSNRMSGR-GNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYS 80
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSF 306
A +G I + I+ S+ + D+++ F +V ++ NL
Sbjct: 81 DLSVYTACNFHNGTLIRNQHIHVCPFVSR----GQWDKSRVFTNV--------YVKNLVE 128
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
A +L +FG++GEI S + E + + FG+V + E A A E + G ++ +
Sbjct: 129 TATDADLKRLFGEFGEITSAVVMKDGEGKS-RRFGFVNFEKAEAAVTAIEKMNGVVVDEK 187
Query: 367 PVRL 370
+ +
Sbjct: 188 ELHV 191
>7299788 [R] KOG0118 FOG: RRM domain
Length = 385
Score = 70.5 bits (171), Expect = 5e-12
Identities = 44/158 (27%), Positives = 78/158 (48%), Gaps = 14/158 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L + D+ LK FE G ++ VM + T RSRG+G++ + +SY +
Sbjct: 26 LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY-SQSYMIDNAQNA 84
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT--LFLGNLSFEADRDNLYE 315
+IDGR + P+ ++ D P+ + LF+G L + D + L E
Sbjct: 85 RPHKIDGRTVE-----------PKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLRE 133
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
F +G+IVSV I + +T + +GF ++++ + K
Sbjct: 134 YFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDK 171
>At3g56860 [R] KOG0118 FOG: RRM domain
Length = 478
Score = 70.1 bits (170), Expect = 6e-12
Identities = 48/167 (28%), Positives = 81/167 (47%), Gaps = 12/167 (7%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFV L W E L F+ G + + ++++ + +S+GYG++ ++ +S A A+K+
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 258 HGKEIDGRPINCDMSTSKP--AGAPRDDRAKKFGDVPSEPSDT------LFLGNLSFEAD 309
K+I R C +++ P GAP A P++ S++ +++ N+ E D
Sbjct: 202 Q-KKIGSRMTACQLASKGPVFGGAP---IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELD 257
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
L F K+GEI + T +PKGF Y S E A +A E
Sbjct: 258 PQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
>At3g52150 [R] KOG0118 FOG: RRM domain
Length = 546
Score = 70.1 bits (170), Expect = 6e-12
Identities = 46/185 (24%), Positives = 89/185 (47%), Gaps = 19/185 (10%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+++G + ++ +E L E G V +VMY++ + RSR +G+ + A ++++
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAV--EKVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 135
Query: 258 HGKE-------IDGRPINCDMSTSKPAGAPRD-----DRAKKFGDVPSEPSDTLFLGNLS 305
+G ++GR I ++ T KP + D F D P + +++GNL+
Sbjct: 136 NGNSLFLVSQTVEGREIKVNI-TEKPIASSPDLSVLQSEDSAFVDSPYK----VYVGNLA 190
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
++ L +F + G++VS ++ P T + GFG+V + S ED A L +
Sbjct: 191 KTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEG 250
Query: 366 RPVRL 370
+ +RL
Sbjct: 251 QKIRL 255
>SPAC17A2.09c [R] KOG0118 FOG: RRM domain
Length = 632
Score = 69.7 bits (169), Expect = 8e-12
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPI-GGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
+IFVG L + +D L F I SA+++ + T SR YG+V F + + A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSD---------------TLF 300
M G GRP+ +++ K + D A G VP+ S+ T+F
Sbjct: 243 HMQGYLCQGRPLRISVASPKSRASIAADSA--LGIVPTSTSNRQPNQDLCSMDPLNTTVF 300
Query: 301 LGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQG 360
+G L+ +L F +G I++++IP KG G+VQY A KA +QG
Sbjct: 301 VGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAINTMQG 354
Query: 361 EYINNRPVRL 370
+ +RL
Sbjct: 355 ALVGTSHIRL 364
Score = 52.0 bits (123), Expect = 2e-06
Identities = 37/183 (20%), Positives = 83/183 (45%), Gaps = 9/183 (4%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSR--GYGYVDFEDKSYAEKAI 254
T+++G L +D +++ + + ++ +VM + + Y +V F + AE+A+
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 255 KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
+ + I G ++ + G ++ + +P ++F+G+L + +L+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSR------DPEFSIFVGDLLPTTEDSDLF 199
Query: 315 EIFGK-YGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
F Y S +I P T + +G+V++ S ++ A +QG RP+R+ +
Sbjct: 200 MTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
Query: 374 IPK 376
PK
Sbjct: 260 SPK 262
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 69.7 bits (169), Expect = 8e-12
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
++++VG L S+++ L F + V + RV + T RS GY YV+F + A +A++
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
++ I RPI +S P+ R G+V F+ NL D LYE
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPS-----TRLSGKGNV--------FIKNLDASIDNKALYE 150
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
F +G I+S ++ + KG+G+VQ+ E A A + L G +N++ V
Sbjct: 151 TFSSFGTILSCKV-AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 202
Score = 64.7 bits (156), Expect = 3e-10
Identities = 46/175 (26%), Positives = 84/175 (47%), Gaps = 7/175 (4%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++V L I D+ LK F G + SA VM ++ + SR +G+V+F A A+++M
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAK----KFGDVPSEPSDTLFLGNLSFEADRDNL 313
+G + G + K + + R K + L+L NL + + L
Sbjct: 286 NGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 344
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
E+F +YG + S ++ + + +GFG+V Y + E+A A + + G+ I +P+
Sbjct: 345 KEMFSEYGNVTSCKVMMNSQGLS-RGFGFVAYSNPEEALLAMKEMNGKMIGRKPL 398
>At1g01080 [R] KOG0118 FOG: RRM domain
Length = 293
Score = 69.7 bits (169), Expect = 8e-12
Identities = 52/174 (29%), Positives = 75/174 (42%), Gaps = 9/174 (5%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
P ++V + S D L F+P G VIS V T SRG GYV + A+ AI
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 255 KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPS-----EPSDTLFLGNLSFEAD 309
+ G E+ GR + S G R+ P E +++GNL +
Sbjct: 167 ASLDGTEVGGREMRVRYSVDMNPGTRRNPEV--LNSTPKKILMYESQHKVYVGNLPWFTQ 224
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQY--GSIEDATKAFEGLQGE 361
D L F K+G IVS R+ +T + + F ++ + G DA +F G Q E
Sbjct: 225 PDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYE 278
Score = 52.8 bits (125), Expect = 1e-06
Identities = 25/76 (32%), Positives = 42/76 (54%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
L++ N+ D L ++F +G ++SV + +P+T + +G GYV GSI A A L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 359 QGEYINNRPVRLDYSI 374
G + R +R+ YS+
Sbjct: 170 DGTEVGGREMRVRYSV 185
>SPAC328.05 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 69.3 bits (168), Expect = 1e-11
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
P T+ + W + LK F G VI A + + RSRG G V A AI
Sbjct: 186 PRTLLPYNVRW----QDLKDLFRQAGSVIRADIQMNQ-EGRSRGIGIVVMSSMKEAMHAI 240
Query: 255 KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEP-SDTLFLGNLSFEADRDNL 313
+ +H + GR + ++ + A +D + P P SD +++GNL + NL
Sbjct: 241 QMLHNTDFMGRTL--EVRLDRFAHHKIEDLV--YHAYPHGPCSDCIYVGNLPWATSDRNL 296
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
++F G ++ RI P T + KGFG VQ+ + DA + E L G RP++L Y+
Sbjct: 297 LDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 69.3 bits (168), Expect = 1e-11
Identities = 43/174 (24%), Positives = 79/174 (44%), Gaps = 9/174 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++ G L +++D L + V+Y R T +SRG+ +V + I +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
G E GR + + A P+ ++ + E LF+GNLS+ ++L F
Sbjct: 147 DGTEYLGRALKVNF-----ADKPKPNKEPLY----PETEHKLFVGNLSWTVTSESLAGAF 197
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
+ G++V R+ +T + +G+G+V Y S + A E L G + R +R++
Sbjct: 198 RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVN 251
Score = 68.6 bits (166), Expect = 2e-11
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG LSW++ E L F G V+ ARV+++ T RSRGYG+V + K+ E A++ +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 258 HGKEIDGRPINCDMSTSK 275
G E++GR I +++ K
Sbjct: 239 DGFELEGRAIRVNLAQGK 256
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 68.9 bits (167), Expect = 1e-11
Identities = 36/114 (31%), Positives = 61/114 (52%), Gaps = 9/114 (7%)
Query: 260 KEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGK 319
K+ + +N +S S P+ F + S LF+G +++ D D+L E F K
Sbjct: 12 KQTTNKQLNAQVSLSSPS---------LFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTK 62
Query: 320 YGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
YGE+V R+ ET + +GFG+V + S E A+ A + L G ++ R V+++Y+
Sbjct: 63 YGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
Score = 62.4 bits (150), Expect = 1e-09
Identities = 26/81 (32%), Positives = 50/81 (61%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G +++S+D++ L+ F G V+ RV+ +R T RSRG+G+V F A AI+ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 258 HGKEIDGRPINCDMSTSKPAG 278
G+++ GR + + + + +G
Sbjct: 102 DGRDLHGRVVKVNYANDRTSG 122
>SPAC3G6.04 [K] KOG4210 Nuclear localization sequence binding protein
Length = 369
Score = 68.6 bits (166), Expect = 2e-11
Identities = 46/128 (35%), Positives = 67/128 (51%), Gaps = 9/128 (7%)
Query: 235 RSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPI----NCDMS--TSKPAGAPRDDRAKKF 288
+++G+ YVDF + + A+ + K ++GR I N D S SKPA +
Sbjct: 163 QNKGFAYVDFATEDALKLAL-QCSEKALNGRNILIKSNTDFSGRPSKPANTL--SKTASI 219
Query: 289 GDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSI 348
EPS LF+GNL FE +L E FG+ G+I VR+ T +T + KGFG+V + I
Sbjct: 220 QSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDI 279
Query: 349 EDATKAFE 356
+ KA E
Sbjct: 280 DTCMKAME 287
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 67.8 bits (164), Expect = 3e-11
Identities = 44/164 (26%), Positives = 83/164 (49%), Gaps = 15/164 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+ V L ++ E LK+ F IG + S +++ ++ T +S GYG+V++ D AEKAI +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G + + I +S ++P+ A D L++ L + L ++F
Sbjct: 101 NGLRLQTKTIK--VSYARPSSASIRDA-------------NLYVSGLPKTMTQKELEQLF 145
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGE 361
+YG I++ RI T +G G++++ +A +A +GL G+
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 66.6 bits (161), Expect = 7e-11
Identities = 51/231 (22%), Positives = 103/231 (44%), Gaps = 50/231 (21%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A ++V L ++ + L+ F G +I++R++ ++ T SRG G++ F+ + AE+AIK
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 256 EMHGKEIDG--RPINCDM------------------STSKPAGAPRDDRAKKFG------ 289
++G++ G PI S ++ P +A++F
Sbjct: 185 GLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 244
Query: 290 ----------------------DVPSEPSD--TLFLGNLSFEADRDNLYEIFGKYGEIVS 325
++P P +F+ NL+ +AD L+++FG +G + +
Sbjct: 245 MAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTN 304
Query: 326 VRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIPK 376
V++ T + KGFG+V + ++A A L G + +R +++ + K
Sbjct: 305 VKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSLNGYRLGDRVLQVSFKTNK 355
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 67.8 bits (164), Expect = 3e-11
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVM-YERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+FV L S+ + L+ F+ G ++S +V E G +SRGYG+V FE + A AI+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDG--KSRGYGFVQFEQEDAAHAAIQT 171
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
++ + + I K DR K P E L++ NL + D L E
Sbjct: 172 LNSTIVADKEIYVGKFMKKT------DRVK-----PEEKYTNLYMKNLDADVSEDLLREK 220
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQG 360
F ++G+IVS+ I E +G+ +V + + EDA +A E + G
Sbjct: 221 FAEFGKIVSLAI-AKDENRLCRGYAFVNFDNPEDARRAAETVNG 263
Score = 58.5 bits (140), Expect = 2e-08
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
A+++VG L S+ + L F + S R+ + + RS YGY +F + A AI+
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
+ + ++G+ I S P D R G+V F+ NL L +
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAP-----DARRNGVGNV--------FVKNLPESVTNAVLQD 130
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
+F K+G IVS ++ T E + +G+G+VQ+ + A A + L + ++ +
Sbjct: 131 MFKKFGNIVSCKVATL-EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
>7290796 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 67.4 bits (163), Expect = 4e-11
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+ V L + D L F IG + + R+M + T S GY +VDF + +++AIK +
Sbjct: 87 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 146
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G + + + +S ++P G D L++ NL D L IF
Sbjct: 147 NGITVRNKRLK--VSYARPGGESIKDT-------------NLYVTNLPRTITDDQLDTIF 191
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
GKYG IV I T +P+G +V+Y E+A +A L
Sbjct: 192 GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 232
>SPBC23E6.01c [R] KOG0118 FOG: RRM domain
Length = 255
Score = 67.0 bits (162), Expect = 5e-11
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 228 MYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSK------------ 275
M + T+ SRGYG+V F D++ + A+ EM G+ RPI ++T K
Sbjct: 1 MTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVV 60
Query: 276 PAGAPRDDRAKKFGDVP---SEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHP 332
P P VP + T+F+G LS + L +F +GEIV V+IP
Sbjct: 61 PVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP--- 117
Query: 333 ETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
KG G+VQ+ + + A A LQG + N +RL +
Sbjct: 118 ---PGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSW 154
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 66.6 bits (161), Expect = 7e-11
Identities = 50/177 (28%), Positives = 87/177 (48%), Gaps = 6/177 (3%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+F +L+ I L+ F +G V R++ +R + RS+G YV+F + AI
Sbjct: 133 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG- 191
Query: 257 MHGKEIDGRPINCDMSTS-KPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
+ G+ + G PI S + K A + +K P L++G+L F D L
Sbjct: 192 LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR----LYVGSLHFNITEDMLRG 247
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
IF +G+I ++ + +T + KG+G++ + E A +A E L G + RP+R+ +
Sbjct: 248 IFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 304
Score = 63.9 bits (154), Expect = 5e-10
Identities = 29/86 (33%), Positives = 52/86 (59%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
G P ++VG L ++I ++ L+ FEP G + + +M + T RS+GYG++ F D A +
Sbjct: 226 GGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARR 285
Query: 253 AIKEMHGKEIDGRPINCDMSTSKPAG 278
A+++++G E+ GRP+ T + G
Sbjct: 286 ALEQLNGFELAGRPMRVGHVTERLDG 311
>Hs8923460 [R] KOG0118 FOG: RRM domain
Length = 287
Score = 66.6 bits (161), Expect = 7e-11
Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 11/183 (6%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGG-VISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
A++++G L +D+ ++ F +G V+S +++ R T GY +V+F D + AEK +
Sbjct: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
Query: 255 KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
+++GK + G + PA + + A + P +LF+G+L+ + D LY
Sbjct: 63 HKINGKPLPG---------ATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLY 113
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEY-INNRPVRLDYS 373
E F K +T KG+G+V++ + +A QG + ++PVRL +
Sbjct: 114 EFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
Query: 374 IPK 376
IPK
Sbjct: 174 IPK 176
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 66.6 bits (161), Expect = 7e-11
Identities = 50/177 (28%), Positives = 87/177 (48%), Gaps = 6/177 (3%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+F +L+ I L+ F +G V R++ +R + RS+G YV+F + AI
Sbjct: 151 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG- 209
Query: 257 MHGKEIDGRPINCDMSTS-KPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
+ G+ + G PI S + K A + +K P L++G+L F D L
Sbjct: 210 LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR----LYVGSLHFNITEDMLRG 265
Query: 316 IFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
IF +G+I ++ + +T + KG+G++ + E A +A E L G + RP+R+ +
Sbjct: 266 IFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 322
Score = 63.9 bits (154), Expect = 5e-10
Identities = 29/86 (33%), Positives = 52/86 (59%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
G P ++VG L ++I ++ L+ FEP G + + +M + T RS+GYG++ F D A +
Sbjct: 244 GGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARR 303
Query: 253 AIKEMHGKEIDGRPINCDMSTSKPAG 278
A+++++G E+ GRP+ T + G
Sbjct: 304 ALEQLNGFELAGRPMRVGHVTERLDG 329
>At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 747
Score = 66.2 bits (160), Expect = 9e-11
Identities = 49/193 (25%), Positives = 95/193 (48%), Gaps = 16/193 (8%)
Query: 189 TELAGEPATI--FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
T+++ +T+ FVG + + +E ++ FE G V+ ++ ++ T + +G +V +
Sbjct: 111 TDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSF 306
A++AI+ +H + I T D ++ G + + LF+G+L+
Sbjct: 171 SKDADRAIRALHNQ------ITLPGGTGPVQVRYADGERERIGTLEFK----LFVGSLNK 220
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYIN-- 364
+A + EIF ++G + V + E Q +G G+V+Y S E A A +GL G Y
Sbjct: 221 QATEKEVEEIFLQFGHVEDVYL-MRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRG 279
Query: 365 -NRPVRLDYSIPK 376
N+P+ + ++ PK
Sbjct: 280 CNQPLIVRFAEPK 292
>At2g14550 [A] KOG0131 Splicing factor 3b subunit 4
Length = 314
Score = 66.2 bits (160), Expect = 9e-11
Identities = 43/140 (30%), Positives = 70/140 (49%), Gaps = 16/140 (11%)
Query: 239 YGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT 298
+G+V F ++ A+ AIK + ++ G PI ++ KK DV +
Sbjct: 40 FGFVQFHNEEDADYAIKVFNMIKLYGEPIRVKKASQD----------KKSLDVGAN---- 85
Query: 299 LFLGNLS-FEADRDNLYEIFGKYGEIVS-VRIPTHPETEQPKGFGYVQYGSIEDATKAFE 356
LFLGNL D L++ F +G I +I P+T P+GFG++ Y S E + A E
Sbjct: 86 LFLGNLDPVNVDEKMLHDTFSAFGVISDHPKIMRDPDTGNPRGFGFISYDSFEASDAAIE 145
Query: 357 GLQGEYINNRPVRLDYSIPK 376
+ G+Y++NR + + Y+ K
Sbjct: 146 AMTGQYLSNRQITVTYAYKK 165
>7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 421
Score = 66.2 bits (160), Expect = 9e-11
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 24/178 (13%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E +FVG LSW E L F G +I VM + RSRG+G+V F D +
Sbjct: 5 ERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHV 64
Query: 254 IKE----MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEAD 309
++ + G+ ID +P N PR + K G +FLG L
Sbjct: 65 LQNGPHTLDGRTIDPKPCN-----------PRTLQKPKKGG-----GYKVFLGGLPSNVT 108
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQY---GSIEDAT-KAFEGLQGEYI 363
+L F +YG++ V I E ++ +GFG++ + S+E T + + L G+ +
Sbjct: 109 ETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQV 166
>Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 65.9 bits (159), Expect = 1e-10
Identities = 40/164 (24%), Positives = 83/164 (50%), Gaps = 15/164 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+ V L ++ + K+ F IG + S +++ ++ T R GYG+V++ D + A+KAI +
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGRDLGYGFVNYPDPNDADKAINTL 100
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G ++ + I +S ++P+ A D L++ L + + ++F
Sbjct: 101 NGLKLQTKTIK--VSYARPSSASIRDA-------------NLYVSGLPKTMSQKEMEQLF 145
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGE 361
+YG I++ RI T +G G++++ +A +A +GL G+
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 49.7 bits (117), Expect = 9e-06
Identities = 24/78 (30%), Positives = 44/78 (55%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
+F+ NLS EAD L+++FG +G + +V++ T + KGFG+V + ++A A L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 359 QGEYINNRPVRLDYSIPK 376
G + R +++ + K
Sbjct: 338 NGYRLAERVLQVSFKTSK 355
>At5g04280 [R] KOG0118 FOG: RRM domain
Length = 310
Score = 65.9 bits (159), Expect = 1e-10
Identities = 31/84 (36%), Positives = 51/84 (59%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
A E + IFVG LS + D L+ F G ++ ++M ER T RSRG+G++ F D+ +
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 252 KAIKEMHGKEIDGRPINCDMSTSK 275
++I+EMHG++ R I+ + + K
Sbjct: 63 ESIREMHGRDFGDRVISVNRAEPK 86
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 65.9 bits (159), Expect = 1e-10
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 6/185 (3%)
Query: 189 TELAGEPA---TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFE 245
TEL+ E T+F +LS + L+ F +G V R++ T R +G Y++F+
Sbjct: 227 TELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFD 286
Query: 246 DKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLS 305
D A+ + G+ + G PI + ++ + A F L++G+L
Sbjct: 287 DPESVALALG-LSGQRLLGVPIMVQHTQAEKNRL--QNAAPAFQPKSHTGPMRLYVGSLH 343
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
F D L IF +G+I ++++ ET + KG+G++ Y + +DA KA E L G +
Sbjct: 344 FNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAG 403
Query: 366 RPVRL 370
R +++
Sbjct: 404 RLMKV 408
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 65.5 bits (158), Expect = 2e-10
Identities = 26/79 (32%), Positives = 51/79 (63%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
++FVG + + +E LK F +G V+S R++Y+R T + +GYG+ +++D+ A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 257 MHGKEIDGRPINCDMSTSK 275
++G+E GR + D + S+
Sbjct: 77 LNGREFSGRALRVDNAASE 95
Score = 60.1 bits (144), Expect = 7e-09
Identities = 27/74 (36%), Positives = 44/74 (58%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
++F+GN+ +EA + L +IF + G +VS R+ ET +PKG+G+ +Y E A A
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 358 LQGEYINNRPVRLD 371
L G + R +R+D
Sbjct: 77 LNGREFSGRALRVD 90
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 65.5 bits (158), Expect = 2e-10
Identities = 42/164 (25%), Positives = 82/164 (49%), Gaps = 15/164 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+ V L ++ E ++ F IG + S +++ ++ T +S GYG+V++ D AEKAI +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G + + I +S ++P+ A D L++ L + L ++F
Sbjct: 108 NGLRLQTKTIK--VSYARPSSASIRDA-------------NLYVSGLPKTMTQKELEQLF 152
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGE 361
+YG I++ RI T +G G++++ +A +A +GL G+
Sbjct: 153 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
>At1g58470 [R] KOG0118 FOG: RRM domain
Length = 360
Score = 65.5 bits (158), Expect = 2e-10
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 16/193 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG ++ +E LK F G V+ A V E+ T + RG+G+V F + KA+++
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 258 H---GKEIDGR-----------PINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGN 303
H GK +D R P + K R V S + +F+G
Sbjct: 68 HFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSR-TKKIFVGG 126
Query: 304 LSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYI 363
LS + F ++G V + T +P+GFG+V Y S ED+ + +
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS-EDSVEVVMQSNFHEL 185
Query: 364 NNRPVRLDYSIPK 376
+++ V + +IPK
Sbjct: 186 SDKRVEVKRAIPK 198
>7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 479
Score = 65.5 bits (158), Expect = 2e-10
Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 53/234 (22%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTD-RSRGYGYVDFEDKSYAEKAI 254
A ++V L ++ + L+ F P G +I++R++ G D +++G G++ F+ + A +AI
Sbjct: 244 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 303
Query: 255 KEMHGKEIDG--RPI-----NCDMSTSK------PA-----------GA---PRDDRAKK 287
++G PI N STSK PA GA P + +
Sbjct: 304 IALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLAR 363
Query: 288 FGDVPSEPSDTL-------------------------FLGNLSFEADRDNLYEIFGKYGE 322
F + + D + F+ NL+ E + L+++FG +G
Sbjct: 364 FSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGA 423
Query: 323 IVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIPK 376
+ SV+I P T Q KG+G+V + ++A A L G + NR +++ + K
Sbjct: 424 VQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNK 477
>CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 872
Score = 65.1 bits (157), Expect = 2e-10
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 17/175 (9%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGG--VISARVMY-----ERGTDRSRGYGYVDFEDKS 248
+T+FV L++ D L+ F G V SA++ E S G+G+V F
Sbjct: 641 STLFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLSMGFGFVQFYTAF 700
Query: 249 YAEKAIKEMHGKEIDGRPINCDMS----TSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
A+ A+K+M G+ +DG + +S K A ++ + K+ G+ L + NL
Sbjct: 701 DAKTALKDMQGELLDGHSLELKISHRENADKGALKRKEVKQKEQGECTK-----LLVRNL 755
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHP-ETEQPKGFGYVQYGSIEDATKAFEGL 358
FEA + +F +G + ++RIP P + +Q +GFG+V + S ++A +AF+ L
Sbjct: 756 PFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAFDSL 810
>7291545 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 449
Score = 65.1 bits (157), Expect = 2e-10
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 21/208 (10%)
Query: 189 TELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKS 248
T + P I+VG L ++ + +K + G + ++ + T+ ++G+ + ++ D S
Sbjct: 235 TIVPDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPS 294
Query: 249 YAEKAIKEMHGKEIDGRPINCDMS-----TSKPAGAPRDDRAKKFGDV--PSEPSDTLFL 301
+ AI +HG + R + S + P P + + P P++TL L
Sbjct: 295 VTDHAIAGLHGMLLGDRRLVVQRSIPGGKNAFPGHLPTVLQVPGISTLQDPGSPTETLCL 354
Query: 302 GNL----------SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPK---GFGYVQYGSI 348
N+ FE R ++ + K+GE+ S++IP P + PK G +VQ+ S+
Sbjct: 355 LNMVRPEELLDDEEFEDIRTDIKQECAKFGEVRSIKIP-RPIGQFPKRGCGKVFVQFESV 413
Query: 349 EDATKAFEGLQGEYINNRPVRLDYSIPK 376
ED+ KA + L G + R V Y P+
Sbjct: 414 EDSQKALKALSGRKFSGRIVMTSYYDPE 441
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 64.7 bits (156), Expect = 3e-10
Identities = 26/79 (32%), Positives = 51/79 (63%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
++FVG + + +E LK F +G V+S R++Y+R T + +GYG+ +++D+ A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 257 MHGKEIDGRPINCDMSTSK 275
++G+E GR + D + S+
Sbjct: 77 LNGREFSGRALRVDNAASE 95
Score = 59.7 bits (143), Expect = 9e-09
Identities = 27/74 (36%), Positives = 44/74 (58%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
++F+GN+ +EA + L +IF + G +VS R+ ET +PKG+G+ +Y E A A
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 358 LQGEYINNRPVRLD 371
L G + R +R+D
Sbjct: 77 LNGREFSGRALRVD 90
>At2g16940 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 600
Score = 64.7 bits (156), Expect = 3e-10
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 27/175 (15%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P+ + + T+F +++ + + F G V R++ +R + RSRG GYV+F D
Sbjct: 173 PEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYD 232
Query: 247 KSYAEKAIKEMHGKEIDGRPI---------NCDMSTSKPAGA-----PRDDRAKKFGDVP 292
AI + G+ + G+P+ N ST+ AGA P A++
Sbjct: 233 TMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR----- 286
Query: 293 SEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGS 347
L++GNL D+L ++F +G + V++P ET KGFG+VQ GS
Sbjct: 287 ------LYVGNLHINMSEDDLRKVFESFGSVELVQVP-RDETGLCKGFGFVQVGS 334
>7301511 [R] KOG0118 FOG: RRM domain
Length = 471
Score = 64.7 bits (156), Expect = 3e-10
Identities = 42/157 (26%), Positives = 74/157 (46%), Gaps = 10/157 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L+ +E LK + G V+ VM + T RSRG+G++ + ++A +E
Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA-QEN 92
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
IDG+ + + +P R+ LF+G L D + L E F
Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETNISV---------KKLFVGGLKDNHDEECLREYF 143
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
++G +VSV++ T T + +GF +V++ + KA
Sbjct: 144 LQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA 180
>CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 749
Score = 64.3 bits (155), Expect = 3e-10
Identities = 39/175 (22%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
I+VG +S+ I ++ L+ F+P G + S + ++ T + + +V++E A A + M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRD-DRAKKFGDVPSEPSDTLF---LGNLSFEADRDNL 313
+G+ + GR + + + P++ +A+ D+ + + F + ++ + +L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG-----LQGEYI 363
+F +GEIV ++ P +GFGY+++ ++ ++A G L G+Y+
Sbjct: 224 KSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYL 278
>CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 339
Score = 64.3 bits (155), Expect = 3e-10
Identities = 39/175 (22%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
I+VG +S+ I ++ L+ F+P G + S + ++ T + + +V++E A A + M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRD-DRAKKFGDVPSEPSDTLF---LGNLSFEADRDNL 313
+G+ + GR + + + P++ +A+ D+ + + F + ++ + +L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG-----LQGEYI 363
+F +GEIV ++ P +GFGY+++ ++ ++A G L G+Y+
Sbjct: 224 KSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYL 278
>At5g06210 [R] KOG0118 FOG: RRM domain
Length = 146
Score = 64.3 bits (155), Expect = 3e-10
Identities = 29/87 (33%), Positives = 54/87 (61%)
Query: 189 TELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKS 248
T+ G + +F+G LS+ ++ L F G V+ A+++ +R +DRS+G+G+V F
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 249 YAEKAIKEMHGKEIDGRPINCDMSTSK 275
A+KA+ E +G++++GR I D + +K
Sbjct: 87 EAQKALMEFNGQQLNGRTIFVDYAKAK 113
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/78 (35%), Positives = 44/78 (55%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
LF+G LSF L E F K G++V +I +++ KGFG+V + S ++A KA
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 359 QGEYINNRPVRLDYSIPK 376
G+ +N R + +DY+ K
Sbjct: 96 NGQQLNGRTIFVDYAKAK 113
>SPAC19G12.07c [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 63.9 bits (154), Expect = 5e-10
Identities = 45/174 (25%), Positives = 83/174 (46%), Gaps = 2/174 (1%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FV +L+ + L FE G V A+++ ++ + RS+G YV+F + + AI
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-A 299
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
+ GK + G P+ ++ ++ R+ P L + N+ F +++ I
Sbjct: 300 LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAI 359
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRL 370
F +G+I V + + + KGFGY+QY + A A E + G + R +R+
Sbjct: 360 FEPFGDIEFVHL-QRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 63.9 bits (154), Expect = 5e-10
Identities = 27/73 (36%), Positives = 48/73 (64%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
LF+G LSF+ + +L ++F KYG+I V + ET++ +GFG+V + +I+DA A +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 359 QGEYINNRPVRLD 371
G+ ++ R +R+D
Sbjct: 68 NGKSVDGRQIRVD 80
Score = 63.5 bits (153), Expect = 6e-10
Identities = 34/98 (34%), Positives = 56/98 (56%), Gaps = 5/98 (5%)
Query: 191 LAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYA 250
+A + +FVG LS+ +++ L+ F G + V+ +R T RSRG+G+V FE+ A
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 251 EKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKF 288
+ A+ M+GK +DGR I D AG D+R++ +
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQ-----AGKSSDNRSRGY 93
>At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 414
Score = 63.9 bits (154), Expect = 5e-10
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
+F+GN+ ++A + L EI G+ G +VS R+ T ET +PKG+G+ +Y E A A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 359 QGEYINNRPVRLDYS 373
Q IN R +R+D++
Sbjct: 71 QSYEINGRQLRVDFA 85
Score = 51.2 bits (121), Expect = 3e-06
Identities = 26/87 (29%), Positives = 48/87 (54%), Gaps = 5/87 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG + + +E L+ +G V+S R++ +R T + +GYG+ +++D+ A A + +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 258 HGKEIDGRPINCDMS-----TSKPAGA 279
EI+GR + D + T K GA
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTPGA 97
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 63.5 bits (153), Expect = 6e-10
Identities = 48/178 (26%), Positives = 79/178 (43%), Gaps = 13/178 (7%)
Query: 188 KTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDK 247
K E E IFV L + L F G ++S +V +S+GYG+V F++K
Sbjct: 88 KDERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVA-TTSHGKSKGYGFVQFKEK 146
Query: 248 SYAEKAIK---EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
A+K IK + G + G I ++ + + +KK S F+ N
Sbjct: 147 KAAKKVIKNFSSLDGLLLGGNRIVVELYNPE----IKKGESKK----TSATFTNCFIKNF 198
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEY 362
F+A L E+ +YG++ S+ P + +PKGF + + + E A A + L G +
Sbjct: 199 PFDASEAELLELLERYGKVTSLFFPV-KDNGKPKGFAFANFENHESALNAIKNLHGTF 255
Score = 57.4 bits (137), Expect = 4e-08
Identities = 48/188 (25%), Positives = 87/188 (45%), Gaps = 23/188 (12%)
Query: 192 AGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAE 251
+ + TI+VG LS D L F +G V+S +++ + + + +V FE++ AE
Sbjct: 10 SSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLI--KRAEPVSSFAFVTFENEEDAE 67
Query: 252 KAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRD 311
+AI+E E+ R I +D+R + G++ F+ NL +
Sbjct: 68 RAIREYKHYELHNRQIRV---------MKKDERPPETGNI--------FVKNLPEDFTGK 110
Query: 312 NLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA---FEGLQGEYINNRPV 368
+L + F +GEIVS ++ T + KG+G+VQ+ + A K F L G + +
Sbjct: 111 DLDDAFSMFGEIVSCKVATTSHGKS-KGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRI 169
Query: 369 RLDYSIPK 376
++ P+
Sbjct: 170 VVELYNPE 177
>At4g14300 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 406
Score = 63.5 bits (153), Expect = 6e-10
Identities = 52/183 (28%), Positives = 83/183 (44%), Gaps = 32/183 (17%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYG------------YVDFE 245
+FVG +SW D++ L+ F G V A VM ++ T R RG+G YV
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGIRKNRCIYFLLRYVLDL 67
Query: 246 DKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLS 305
K ++A+ +++ GR N ++TS+ +G ++ KK +F+G L
Sbjct: 68 GKVDVKRAMSR-EEQQVSGRTGN--LNTSRSSGGDAYNKTKK-----------IFVGGLP 113
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDAT-----KAFEGLQG 360
+ + F YG + V I T +P+GFG+V + S EDA K F L G
Sbjct: 114 PTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHKTFHDLSG 172
Query: 361 EYI 363
+ +
Sbjct: 173 KQV 175
>At5g07290 [D] KOG4660 Protein Mei2 essential for commitment to meiosis and
related proteins
Length = 907
Score = 63.2 bits (152), Expect = 8e-10
Identities = 48/179 (26%), Positives = 86/179 (47%), Gaps = 22/179 (12%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FV + SI+D L F+ G V R ++ G ++RG+ V + D A+KA + +
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDV---RALHTAG--KNRGFIMVSYYDIRAAQKAARAL 267
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
HG+ + GR + D+ S P P+++ ++ L++ NL + L+ IF
Sbjct: 268 HGRLLRGRKL--DIRYSIPKENPKENSSE----------GALWVNNLDSSISNEELHGIF 315
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIPK 376
YGEI VR H ++ Y+++ + A A +GL G + R ++L + P+
Sbjct: 316 SSYGEIREVRRTMHENSQV-----YIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPE 369
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 62.8 bits (151), Expect = 1e-09
Identities = 24/74 (32%), Positives = 50/74 (67%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
++FVG +S+ + ++ +++ F G V+S +++++R T + +GYG+++F D AE AI+
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 257 MHGKEIDGRPINCD 270
++G E+ GR + D
Sbjct: 79 LNGYELSGRILRVD 92
Score = 59.7 bits (143), Expect = 9e-09
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
++F+GN+S++ D + IF K G ++S+++ ET +PKG+G++++ I+ A A
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 358 LQGEYINNRPVRLD 371
L G ++ R +R+D
Sbjct: 79 LNGYELSGRILRVD 92
>7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 637
Score = 62.8 bits (151), Expect = 1e-09
Identities = 30/177 (16%), Positives = 90/177 (49%), Gaps = 4/177 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++VG +S+ + ++ ++ F P G + S + ++ T + +G+ +V++E A+ A+++M
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G + GR ++ +P+ P+ + ++ + +++ ++ + +++ +F
Sbjct: 192 NGALMGGR----NIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVF 247
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSI 374
+G I+ ++ KG+G+++Y + + +A + + + +R+ SI
Sbjct: 248 EAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSI 304
>At5g40490 [R] KOG0118 FOG: RRM domain
Length = 423
Score = 62.4 bits (150), Expect = 1e-09
Identities = 40/150 (26%), Positives = 69/150 (45%), Gaps = 13/150 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG L+ F G + + +M +R T + RG+G+V + D S +K I++
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
H I G+ + + + + + D + KK +F+G + D D E F
Sbjct: 104 H--IIIGKQVEIKRTIPRGSMSSNDFKTKK-----------IFVGGIPSSVDDDEFKEFF 150
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGS 347
++GE+ +I T + +GFG+V Y S
Sbjct: 151 MQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
>Hs5803137 [R] KOG0118 FOG: RRM domain
Length = 157
Score = 62.0 bits (149), Expect = 2e-09
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 191 LAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYA 250
++ E +FVG L+++ D++ L+ F G + V+ +R T RSRG+G++ F + +A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 251 EKAIKEMHGKEIDGRPINCDMSTSKPAG 278
A++ M+G+ +DGR I D + G
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKSARG 88
Score = 55.1 bits (131), Expect = 2e-07
Identities = 25/81 (30%), Positives = 45/81 (54%)
Query: 293 SEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDAT 352
S LF+G L+F D L + F +G I V + ET++ +GFG++ + + E A+
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 353 KAFEGLQGEYINNRPVRLDYS 373
A + GE ++ R +R+D++
Sbjct: 62 VAMRAMNGESLDGRQIRVDHA 82
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 62.0 bits (149), Expect = 2e-09
Identities = 35/171 (20%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++VG + + + ++ ++ F P G + S + ++ T + +G+ +V++E A+ A+++M
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+ + GR I ++ P D+ + + + +++ ++ + D++ +F
Sbjct: 191 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAE----EARAFNRIYVASVHQDLSDDDIKSVF 246
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQY---GSIEDATKAFE--GLQGEYI 363
+G+I S + P T + KG+G+++Y S +DA + L G+Y+
Sbjct: 247 EAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297
>Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 542
Score = 62.0 bits (149), Expect = 2e-09
Identities = 35/171 (20%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
++VG + + + ++ ++ F P G + S + ++ T + +G+ +V++E A+ A+++M
Sbjct: 114 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 173
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+ + GR I ++ P D+ + + + +++ ++ + D++ +F
Sbjct: 174 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAE----EARAFNRIYVASVHQDLSDDDIKSVF 229
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQY---GSIEDATKAFE--GLQGEYI 363
+G+I S + P T + KG+G+++Y S +DA + L G+Y+
Sbjct: 230 EAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 280
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 62.0 bits (149), Expect = 2e-09
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+ + L + D L F G + + ++M + T S GYG+VD++ +S +E AI+++
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G + + + +S ++P G D L++ NLS + D L IF
Sbjct: 155 NGFYVRNKRLK--VSYARPGGQSIKDT-------------NLYVINLSRNINDDMLDRIF 199
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
YG IV I T +P+G +V+Y E+A +A + L
Sbjct: 200 SPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKAL 240
>SPBC18H10.04c [R] KOG0118 FOG: RRM domain
Length = 388
Score = 61.6 bits (148), Expect = 2e-09
Identities = 33/86 (38%), Positives = 51/86 (58%), Gaps = 3/86 (3%)
Query: 291 VPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIED 350
+PSEP T +GNLSF+ ++L + FG+ + S+R+ P TE+ +GFGYV++ D
Sbjct: 88 IPSEPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEF-ETAD 144
Query: 351 ATKAFEGLQGEYINNRPVRLDYSIPK 376
A L GE + RPVR+ + P+
Sbjct: 145 TLSAALALSGEDLMGRPVRITVAEPR 170
>Hs4504447 [R] KOG0118 FOG: RRM domain
Length = 341
Score = 61.6 bits (148), Expect = 2e-09
Identities = 41/157 (26%), Positives = 77/157 (48%), Gaps = 12/157 (7%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LS+ +E L+ +E G + VM + + RSRG+G+V F + + A+
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-- 68
Query: 258 HGKEIDGRPINCDMSTSKPAGA-PRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
RP + D +P A R++ K V + LF+G + + + +L +
Sbjct: 69 ------ARPHSIDGRVVEPKRAVAREESGKPGAHVTVK---KLFVGGIKEDTEEHHLRDY 119
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
F +YG+I ++ I T ++ + +GFG+V + + K
Sbjct: 120 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
>Hs4504445 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 61.6 bits (148), Expect = 2e-09
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 188 KTELAGEPATI---FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDF 244
K+E EP + F+G LS+ DE L++ FE G + VM + T RSRG+G+V +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 245 EDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
+ A+ K +DGR + + S R+D + + + +F+G +
Sbjct: 63 ATVEEVDAAMNARPHK-VDGRVVEPKRAVS------REDSQRPGAHLTVK---KIFVGGI 112
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+ + +L + F +YG+I + I T + + +GF +V + + K
Sbjct: 113 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 268
Score = 61.6 bits (148), Expect = 2e-09
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 188 KTELAGEPATI---FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDF 244
K+E EP + F+G LS+ DE L++ FE G + VM + T RSRG+G+V +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 245 EDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
+ A+ K +DGR + + S R+D + + + +F+G +
Sbjct: 63 ATVEEVDAAMNARPHK-VDGRVVEPKRAVS------REDSQRPDAHLTVK---KIFVGGI 112
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+ + +L + F +YG+I + I T + + +GF +V + + K
Sbjct: 113 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>Hs14790190 [R] KOG0112 Large RNA-binding protein (RRM superfamily)
Length = 3664
Score = 61.6 bits (148), Expect = 2e-09
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 215 EFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDM--- 271
EF+ G V S ++ GT R YG V F + EKA+ GK G I
Sbjct: 358 EFKKFGKVTSVQI---HGTSEER-YGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIG 413
Query: 272 --STSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIP 329
+ S+ P D+R +F + + TLF+GNL +L IF ++GEIV + I
Sbjct: 414 PETESENEFRPLDERIDEFHP---KATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIK 470
Query: 330 THPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
Q + ++QY I KA + + GEY+ N ++L +
Sbjct: 471 KVNGVPQ---YAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGF 510
>Hs14043072 [R] KOG0118 FOG: RRM domain
Length = 353
Score = 61.6 bits (148), Expect = 2e-09
Identities = 41/157 (26%), Positives = 77/157 (48%), Gaps = 12/157 (7%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LS+ +E L+ +E G + VM + + RSRG+G+V F + + A+
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-- 80
Query: 258 HGKEIDGRPINCDMSTSKPAGA-PRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
RP + D +P A R++ K V + LF+G + + + +L +
Sbjct: 81 ------ARPHSIDGRVVEPKRAVAREESGKPGAHVTVK---KLFVGGIKEDTEEHHLRDY 131
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
F +YG+I ++ I T ++ + +GFG+V + + K
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
>Hs14043070 [R] KOG0118 FOG: RRM domain
Length = 372
Score = 61.6 bits (148), Expect = 2e-09
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 188 KTELAGEPATI---FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDF 244
K+E EP + F+G LS+ DE L++ FE G + VM + T RSRG+G+V +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 245 EDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
+ A+ K +DGR + + S R+D + + + +F+G +
Sbjct: 63 ATVEEVDAAMNARPHK-VDGRVVEPKRAVS------REDSQRPGAHLTVK---KIFVGGI 112
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+ + +L + F +YG+I + I T + + +GF +V + + K
Sbjct: 113 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>Hs13650572 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 61.6 bits (148), Expect = 2e-09
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 188 KTELAGEPATI---FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDF 244
K+E EP + F+G LS+ DE L++ FE G + VM + T RSRG+G+V +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 245 EDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
+ A+ K +DGR + + S R+D + + + +F+G +
Sbjct: 63 ATVEEVDAAMNARPHK-VDGRVVEPKRAVS------REDSQRPGAHLTVK---KIFVGGI 112
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+ + +L + F +YG+I + I T + + +GF +V + + K
Sbjct: 113 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>CE29317 [R] KOG0118 FOG: RRM domain
Length = 308
Score = 61.6 bits (148), Expect = 2e-09
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 216 FEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSK 275
+ G + VM + T RSRG+G+V F K+ + A+K+ RP D T
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ--------RPHIIDGKTVD 56
Query: 276 PAGA-PRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPET 334
P A PRDD+ + +V ++ L++ + + D L E F KYG + I T
Sbjct: 57 PKRAVPRDDKNRSESNVSTK---RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKAT 113
Query: 335 EQPKGFGYVQY 345
++P+GFG+V +
Sbjct: 114 QKPRGFGFVTF 124
>At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
Length = 244
Score = 61.2 bits (147), Expect = 3e-09
Identities = 31/80 (38%), Positives = 48/80 (59%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+++G LS D+ LK F GV ARVM + T RSRGYG+V+F + A AI M
Sbjct: 65 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 124
Query: 258 HGKEIDGRPINCDMSTSKPA 277
+G+E++G I+ +++ P+
Sbjct: 125 NGQELNGFNISVNVAKDWPS 144
>YNL175c [K] KOG4210 Nuclear localization sequence binding protein
Length = 403
Score = 60.8 bits (146), Expect = 4e-09
Identities = 38/138 (27%), Positives = 71/138 (50%), Gaps = 4/138 (2%)
Query: 235 RSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSE 294
+++G+ Y+ F++ KA+ E+ ++GR + S + +DD + PS
Sbjct: 181 KNKGFCYMFFKNVEQM-KAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSR 239
Query: 295 PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
LF+GNLSF+ D L + F G+IV +R+ T ++ + KGF ++ + + E +T
Sbjct: 240 ---ILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNE 296
Query: 355 FEGLQGEYINNRPVRLDY 372
+ I RP+R++Y
Sbjct: 297 LKDKSCRKIAGRPLRMEY 314
>Hs5031693 [R] KOG0118 FOG: RRM domain
Length = 269
Score = 60.8 bits (146), Expect = 4e-09
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LS+ D+ L+ FE G + VM + T RSRG+G+V + + + AI
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCLVMRDPQTKRSRGFGFVTYSCVTEVDAAIGAR 96
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
K +DGR + + S R+D K + + +F+G++ + + NL + F
Sbjct: 97 PFK-VDGRVVEPKRAVS------REDSVKPGAHLTVK---KIFVGSIKEDTEEYNLRDYF 146
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
KYG+I ++ + ++ + +GF V + + K
Sbjct: 147 EKYGKIETIEVMEDRQSGKKRGFASVTFDDHDTVDK 182
Score = 57.0 bits (136), Expect = 6e-08
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 16/109 (14%)
Query: 271 MSTSKPAGAPRDD---RAKKFGDVPSEPSDT-----LFLGNLSFEADRDNLYEIFGKYGE 322
M P G P+ D R +++G+ +P + LF+G LSFE D+L E F K+G
Sbjct: 1 MEVKPPPGCPQPDSGSRRRRWGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT 60
Query: 323 IVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
+ + P+T++ +GFG+V Y + + A I RP ++D
Sbjct: 61 LTDCLVMRDPQTKRSRGFGFVTYSCVTEVDAA--------IGARPFKVD 101
>Hs13654587 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 60.8 bits (146), Expect = 4e-09
Identities = 40/156 (25%), Positives = 75/156 (47%), Gaps = 10/156 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LS+ DE L++ FE G + VM + T RSRG+G+V + + A+
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
K +DGR + + S R+D + + + +F+G + + + +L + F
Sbjct: 76 PHK-VDGRVVEPKRAVS------REDSQRPGAHLTVK---KIFVGGIKEDTEEHHLRDYF 125
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+YG+I + I T + + +GF +V + + K
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>At4g25500 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 350
Score = 60.8 bits (146), Expect = 4e-09
Identities = 48/182 (26%), Positives = 84/182 (45%), Gaps = 23/182 (12%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F G + + L+ F G V ER D G+ +V ED+ AE AI+ +
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKV-------ER-VDMKAGFAFVYMEDERDAEDAIRAL 55
Query: 258 HGKEID--GRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYE 315
E GR + + + S+ G R + PS TLF+ ++F+AD +
Sbjct: 56 DRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFV--INFDADNTRTRD 113
Query: 316 I---FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
+ F YG+IV+VRI + F ++QY + EDAT+A + + ++ + ++Y
Sbjct: 114 LEKHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNSKLMDKVISVEY 165
Query: 373 SI 374
++
Sbjct: 166 AV 167
>At2g42890 [D] KOG4660 Protein Mei2 essential for commitment to meiosis and
related proteins
Length = 803
Score = 60.8 bits (146), Expect = 4e-09
Identities = 45/179 (25%), Positives = 79/179 (43%), Gaps = 21/179 (11%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FV ++ S++D L FEP G + R +Y +SRG+ + + D A A++
Sbjct: 186 TLFVRNINSSVEDSELSALFEPFGEI---RSLYT--ACKSRGFVMISYYDIRAAHAAMRA 240
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
+ + R ++ S K + +D TL + N+ D L ++
Sbjct: 241 LQNTLLRKRTLDIHFSIPKENPSEKDMN-----------QGTLVIFNVDTTVSNDELLQL 289
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIP 375
FG YGEI +R ET + +++Y + DA A + L I + ++L+ S P
Sbjct: 290 FGAYGEIREIR-----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRP 343
>At2g35410 [R] KOG0118 FOG: RRM domain
Length = 308
Score = 60.8 bits (146), Expect = 4e-09
Identities = 47/182 (25%), Positives = 85/182 (45%), Gaps = 11/182 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FV L WS+ + F G V + ++ ++ ++RG+ +V A+ AI +
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDKF 155
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSE-PSDT---LFLGNLSFEADRDNL 313
++ GR I+ + P+ D+PS P DT L++ NL+++A +L
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSPN-----DLPSPAPGDTRHKLYVSNLAWKARSTHL 210
Query: 314 YEIFGKYG-EIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
E+F VS R+ + G+G+V + + E+A A L G+ I RP+ L +
Sbjct: 211 RELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKF 270
Query: 373 SI 374
S+
Sbjct: 271 SL 272
Score = 54.7 bits (130), Expect = 3e-07
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIG-GVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
++V L+W L+ F +SARV++ RS GYG+V F + AE AI +
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFE 307
++GKEI GRPI S + + D + + SE DT+ N S E
Sbjct: 256 LNGKEIMGRPITLKFSLRSASESEDGDSVE--ANNASEDGDTVEDKNTSEE 304
>Hs22042102 [R] KOG0118 FOG: RRM domain
Length = 378
Score = 60.5 bits (145), Expect = 5e-09
Identities = 40/156 (25%), Positives = 75/156 (47%), Gaps = 10/156 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G LS+ D+ L+ FE G + VM + T RSRG+G+V + + A+
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
K +DGR + + S R+D K + + +F+G + + + NL + F
Sbjct: 97 PHK-VDGRVVEPKRAVS------REDSVKPGAHLTVK---KIFVGGIKEDTEEYNLRDYF 146
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
KYG+I ++ + ++ + +GF +V + + K
Sbjct: 147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDK 182
Score = 56.6 bits (135), Expect = 7e-08
Identities = 31/92 (33%), Positives = 46/92 (49%), Gaps = 8/92 (8%)
Query: 271 MSTSKPAGAPRDDRAKKF------GDVPSEPSDT--LFLGNLSFEADRDNLYEIFGKYGE 322
M P G P+ D ++ G P EP LF+G LSFE D+L E F K+G
Sbjct: 1 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT 60
Query: 323 IVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
+ + P+T++ +GFG+V Y +E+ A
Sbjct: 61 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
>At5g64200 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 303
Score = 60.5 bits (145), Expect = 5e-09
Identities = 30/84 (35%), Positives = 49/84 (57%), Gaps = 2/84 (2%)
Query: 292 PSEPSDT--LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIE 349
P + SDT L + N++F D+LY +F KYG++V V IP T +GF +V+Y +
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 350 DATKAFEGLQGEYINNRPVRLDYS 373
+A KA E L G ++ R + + ++
Sbjct: 69 EAHKAVERLDGRVVDGREITVQFA 92
>At2g16260 [R] KOG0118 FOG: RRM domain
Length = 185
Score = 60.5 bits (145), Expect = 5e-09
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 199 FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMH 258
FVG L+W+ D++ ++ F G V ++++ +R T RS+G+ +V F+D+ AI M+
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 259 GKEIDGRPINCDMSTSKPAG 278
G+E+DGR I S G
Sbjct: 107 GQELDGRNITAQARGSGTRG 126
>At1g76460 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 279
Score = 60.5 bits (145), Expect = 5e-09
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG L+W E L+ FE G ++ A V+ ++ T RS+GYG+V F D A +A +
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD- 84
Query: 258 HGKEIDGRPINCDMSTSKPAGAPR 281
IDGR NC++++ G PR
Sbjct: 85 PTPIIDGRRANCNLAS---LGRPR 105
>7291799 [R] KOG0118 FOG: RRM domain
Length = 307
Score = 60.5 bits (145), Expect = 5e-09
Identities = 45/168 (26%), Positives = 83/168 (48%), Gaps = 12/168 (7%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
I++ L SID++ + F G +++ V + + SRGYG+V F+ + A AI+++
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGN-SRGYGFVHFDSEEAARAAIEKV 173
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G + + ++ PR DR ++ + L++ NLS E +L E+F
Sbjct: 174 NGMLCNNQKVHV------VKFIPRRDREQE----KATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
YG I S ++ E + + FG+V Y + + A A GL G+ + +
Sbjct: 224 EPYGRITSHKLML-DEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGD 270
>At5g54580 [R] KOG0118 FOG: RRM domain
Length = 156
Score = 60.1 bits (144), Expect = 7e-09
Identities = 25/84 (29%), Positives = 48/84 (56%)
Query: 293 SEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDAT 352
+EPS LF+ LS + L F ++GE+ ++ T + KGFG+V+Y ++ED+
Sbjct: 52 AEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSA 111
Query: 353 KAFEGLQGEYINNRPVRLDYSIPK 376
K G+ G++++ + +Y+ P+
Sbjct: 112 KGIAGMDGKFLDGWVIFAEYARPR 135
>YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 611
Score = 59.7 bits (143), Expect = 9e-09
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 20/150 (13%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L ++ +E LK F+ +SA+V + T +S G+GY++FEDK AEKA++E+
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFE---ADRDNLY 314
+ +++G+ I S K FG +F NL Y
Sbjct: 153 NYTKVNGKEIRIMPSLRNTT------FRKNFG-------TNVFFSNLPLNNPLLTTRVFY 199
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQ 344
+ F +YG+I+S ++ ++ + GF Y +
Sbjct: 200 DTFSRYGKILSCKL----DSRKDIGFVYFE 225
>At5g44200 [A] KOG0121 Nuclear cap-binding protein complex subunit CBP20 (RRM
superfamily)
Length = 257
Score = 59.7 bits (143), Expect = 9e-09
Identities = 27/77 (35%), Positives = 47/77 (60%)
Query: 296 SDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAF 355
S T+++GN+SF + LYE+F + GEI + + T+ P GF +V + S ED A
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 356 EGLQGEYINNRPVRLDY 372
+ + G +++RP+R+D+
Sbjct: 93 KYISGTILDDRPIRVDF 109
>At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 304
Score = 59.7 bits (143), Expect = 9e-09
Identities = 31/89 (34%), Positives = 52/89 (57%), Gaps = 6/89 (6%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG L+W + ++ FE G ++ A V+ ++ T RS+GYG+V F++ A +A + M
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 258 HGKEIDGRPINCDMS-----TSKPAGAPR 281
+ IDGR NC+++ +P +PR
Sbjct: 84 N-PVIDGRRANCNLACLGAQKPRPPTSPR 111
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 59.7 bits (143), Expect = 9e-09
Identities = 28/78 (35%), Positives = 48/78 (60%), Gaps = 1/78 (1%)
Query: 296 SDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAF 355
S +F+G +S+ D L E F KYGE+V +I ET + +GF +V + S E+A+ A
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 356 EGLQGEYINNRPVRLDYS 373
+ L G+ ++ R +R++Y+
Sbjct: 93 Q-LDGQDLHGRRIRVNYA 109
Score = 56.6 bits (135), Expect = 7e-08
Identities = 28/81 (34%), Positives = 49/81 (59%), Gaps = 1/81 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG +S+S D+ L+ F G V+ A+++ +R T RSRG+ +V F A A+ ++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 258 HGKEIDGRPINCDMSTSKPAG 278
G+++ GR I + +T + +G
Sbjct: 95 DGQDLHGRRIRVNYATERGSG 115
>At1g18630 [R] KOG0118 FOG: RRM domain
Length = 155
Score = 59.7 bits (143), Expect = 9e-09
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAI 254
P+ IFVG LS S D E LK F G ++ A V+ +R + SRG+G+V ++ A A+
Sbjct: 35 PSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAM 94
Query: 255 KEMHGKEIDGRPINCDMSTSKPAG 278
+ M KE+DGR I + S G
Sbjct: 95 QAMQNKELDGRIIGVHPADSGGGG 118
Score = 50.8 bits (120), Expect = 4e-06
Identities = 28/78 (35%), Positives = 44/78 (55%), Gaps = 1/78 (1%)
Query: 289 GDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSI 348
G++ PS +F+G LS D + L E FG +G+IV + E+ +GFG+V Y SI
Sbjct: 29 GNLSLTPSK-IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSI 87
Query: 349 EDATKAFEGLQGEYINNR 366
E A A + +Q + ++ R
Sbjct: 88 EVANNAMQAMQNKELDGR 105
>Hs20127499 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 344
Score = 59.3 bits (142), Expect = 1e-08
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+++GRLS+++ ++ ++ F G ++ D GYG+V+FED A+ A+ E+
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEV--------DLKNGYGFVEFEDSRDADDAVYEL 55
Query: 258 HGKEIDGRPINCDMST------------SKPAGAPRDDRAKKFGDVPSEPSDT---LFLG 302
+GKE+ G + + + S+ G R D P T L +
Sbjct: 56 NGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVE 115
Query: 303 NLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEY 362
NLS +L + + GE+ H E G +++ S D +A + L G
Sbjct: 116 NLSSRCSWQDLKDFMRQAGEVTYA--DAHKERTNE---GVIEFRSYSDMKRALDKLDGTE 170
Query: 363 INNRPVRLDYSIPK 376
IN R +RL P+
Sbjct: 171 INGRNIRLIEDKPR 184
>At3g61860 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 271
Score = 59.3 bits (142), Expect = 1e-08
Identities = 53/183 (28%), Positives = 84/183 (44%), Gaps = 29/183 (15%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG + L+ F+ G V D GY +V FED+ AE AI+++
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRV--------DMKSGYAFVYFEDERDAEDAIRKL 55
Query: 258 HGKEIDGRPINCDMSTSK-PAGAPRDDRAKKFGDVPS--EPSDTLFLGNLSFEADRDNLY 314
+ +K G PR D PS +P+ TLF+ ++F+ R +
Sbjct: 56 DNFPFGYEKRRLSVEWAKGERGRPRGD-----AKAPSNLKPTKTLFV--INFDPIRTKEH 108
Query: 315 EI---FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
+I F YG++ +VRI + F +VQ+ + EDATKA E Q I +R V ++
Sbjct: 109 DIEKHFEPYGKVTNVRIR--------RNFSFVQFETQEDATKALEATQRSKILDRVVSVE 160
Query: 372 YSI 374
Y++
Sbjct: 161 YAL 163
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 59.3 bits (142), Expect = 1e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
++F+GN+ +EA + L EIF + G ++S+++ E+ +PKGFG+ +Y E A A
Sbjct: 17 SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRN 76
Query: 358 LQGEYINNRPVRLD 371
L G I R +R+D
Sbjct: 77 LNGYEIGGRTLRVD 90
Score = 56.2 bits (134), Expect = 9e-08
Identities = 22/74 (29%), Positives = 48/74 (64%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
++FVG + + +E LK F +G V+S +++++R + + +G+G+ +++D+ A A++
Sbjct: 17 SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRN 76
Query: 257 MHGKEIDGRPINCD 270
++G EI GR + D
Sbjct: 77 LNGYEIGGRTLRVD 90
>Hs22058383 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 476
Score = 58.9 bits (141), Expect = 1e-08
Identities = 35/114 (30%), Positives = 63/114 (54%), Gaps = 5/114 (4%)
Query: 250 AEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLG---NLSF 306
AE A+ M+ I G+P+ CD + SK G+ + ++ + E + + L N
Sbjct: 57 AEHAVNTMNFDVIKGKPVGCDENDSKGYGSVHFE-TQEAAERAMEKMNGMLLNDRKNFGE 115
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQG 360
+ D + L +FGK+G ++V++ T E+ + KGFG+V + +EDA KA + ++G
Sbjct: 116 DMDDERLKNLFGKFGPALNVKVMT-GESGKSKGFGFVSFERLEDAQKAVDEMKG 168
>At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 292
Score = 58.9 bits (141), Expect = 1e-08
Identities = 27/80 (33%), Positives = 46/80 (56%)
Query: 294 EPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+P TLF+G LS D L E+ KYG I ++R+ H T +G+G+V+Y + ++ +
Sbjct: 55 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLR 114
Query: 354 AFEGLQGEYINNRPVRLDYS 373
A+E I+ R + +DY+
Sbjct: 115 AYEDAHHSLIDGREIIVDYN 134
Score = 51.6 bits (122), Expect = 2e-06
Identities = 31/96 (32%), Positives = 51/96 (52%), Gaps = 3/96 (3%)
Query: 189 TELAGEP-ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDK 247
++ G+P T+FVGRLS ++ L+ G + + R++ T SRGYG+V++E +
Sbjct: 50 SKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETE 109
Query: 248 SYAEKAIKEMHGKEIDGRPINCDMSTSK--PAGAPR 281
+A ++ H IDGR I D + + P PR
Sbjct: 110 KEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPR 145
>7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 1112
Score = 58.9 bits (141), Expect = 1e-08
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E +F+ L D L + F P G VISA+V ++ T S+ +G+V F++ A+ A
Sbjct: 741 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 800
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNL 313
IK M+G +++ M ++ P D K D P + +F+G + D L
Sbjct: 801 IKAMNGFQME------LMESTSP------DSIK---DQPDADNIKMFVGQIPKTWDETRL 845
Query: 314 YEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
++F ++G + ++ + T +G +V Y + + A +A + L
Sbjct: 846 RQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDAL 890
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/85 (30%), Positives = 46/85 (53%)
Query: 196 ATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIK 255
+ +F+ L D L + F P G V+SA+V ++ T+ S+ +G+V +++ A AI+
Sbjct: 1027 SNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQ 1086
Query: 256 EMHGKEIDGRPINCDMSTSKPAGAP 280
MHG +I + + + SK A P
Sbjct: 1087 AMHGFQIGSKRLKVQLKRSKDAAKP 1111
>7295256 [AR] KOG0109 RNA-binding protein LARK contains RRM and
retroviral-type Zn-finger domains
Length = 352
Score = 58.9 bits (141), Expect = 1e-08
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 30/176 (17%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L L+ FE G V+ V+ + YG+V E + AI+ +
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQNL 60
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G ++ I + + S+ A P+ P+ +F+GNL+ + + E+F
Sbjct: 61 NGYTLNEFAIKVEAAKSRRA--------------PNTPTTKIFVGNLTDKTRAPEVRELF 106
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
KYG +V E + + +G+V + D A + L G ++ +P+++ S
Sbjct: 107 QKYGTVV--------ECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
>Hs13899354 [AR] KOG0109 RNA-binding protein LARK contains RRM and
retroviral-type Zn-finger domains
Length = 359
Score = 58.5 bits (140), Expect = 2e-08
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 33/176 (18%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L ++ +++ FE G V+ ++ + YG+V EDK+ AE AI+ +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
H ++ G IN + S +K S+ S L +GN+S L F
Sbjct: 56 HHYKLHGVNINVEASKNK-----------------SKASTKLHVGNISPTCTNQELRAKF 98
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
+YG ++ E + K + +V EDA +A GL + + + S
Sbjct: 99 EEYGPVI--------ECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>At1g22330 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 291
Score = 58.5 bits (140), Expect = 2e-08
Identities = 31/98 (31%), Positives = 55/98 (55%), Gaps = 4/98 (4%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG L+W + ++ F+ G ++ A ++ ++ T +S+GYG+V F D A +A+ +
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 258 HGKEIDGRPINCDM-STSKPAGAPRDDRAKKFGDVPSE 294
+ IDGR NC++ S +P P R + G PS+
Sbjct: 79 N-PVIDGRKANCNIASFGRP--RPSTPRGRGQGGSPSQ 113
>At1g20880 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 277
Score = 58.5 bits (140), Expect = 2e-08
Identities = 28/76 (36%), Positives = 45/76 (58%), Gaps = 1/76 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG L+W E L+ F+ G ++ A V+ ++ T RS+GYG+V F D A +A +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD- 84
Query: 258 HGKEIDGRPINCDMST 273
IDGR NC++++
Sbjct: 85 PTPIIDGRRANCNLAS 100
>Hs5730079 [R] KOG0118 FOG: RRM domain
Length = 183
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/79 (32%), Positives = 46/79 (57%)
Query: 295 PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
P+ +LF+ N++ + ++L FG+YG IV V +P T +P+GF YVQ+ + DA A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 355 FEGLQGEYINNRPVRLDYS 373
L ++I R + + ++
Sbjct: 68 LHNLDRKWICGRQIEIQFA 86
>Hs4506445 [AR] KOG0109 RNA-binding protein LARK contains RRM and
retroviral-type Zn-finger domains
Length = 366
Score = 58.2 bits (139), Expect = 2e-08
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 33/176 (18%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L ++ +++ FE G V+ ++ + YG+V EDK+ AE AI+ +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
H ++ G IN + S +K S+ S L +GN+S L F
Sbjct: 56 HHYKLHGVNINVEASKNK-----------------SKTSTKLHVGNISPTCTNKELRAKF 98
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYS 373
+YG ++ E + K + +V EDA +A GL + + + S
Sbjct: 99 EEYGPVI--------ECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>Hs22059019 [R] KOG0118 FOG: RRM domain
Length = 182
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/79 (32%), Positives = 46/79 (57%)
Query: 295 PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
P+ +LF+ N++ + ++L FG+YG IV V +P T +P+GF YVQ+ + DA A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 355 FEGLQGEYINNRPVRLDYS 373
L ++I R + + ++
Sbjct: 68 LHNLDRKWICGRQIEIQFA 86
>Hs16905517 [R] KOG0118 FOG: RRM domain
Length = 262
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/79 (32%), Positives = 46/79 (57%)
Query: 295 PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
P+ +LF+ N++ + ++L FG+YG IV V +P T +P+GF YVQ+ + DA A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 355 FEGLQGEYINNRPVRLDYS 373
L ++I R + + ++
Sbjct: 68 LHNLDRKWICGRQIEIQFA 86
>7300034 [R] KOG0118 FOG: RRM domain
Length = 251
Score = 58.2 bits (139), Expect = 2e-08
Identities = 42/162 (25%), Positives = 70/162 (42%), Gaps = 23/162 (14%)
Query: 216 FEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSK 275
F G + A+++ R T S YG+VD+ + A A+ M G E G+ + +
Sbjct: 61 FSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGMDGYETRGKRLKVAFAR-- 118
Query: 276 PAGAPRDDRAKKFGDVPSE---PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHP 332
PSE S +L++GNL D + E+F YG IV V + H
Sbjct: 119 ----------------PSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHK 162
Query: 333 ETEQPKGFGYVQYGSIEDATKAFEGLQGEYIN--NRPVRLDY 372
+ +G ++Q+ + DA A G+ I +RP+ + +
Sbjct: 163 FNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKF 204
>ECU08g0380 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 214
Score = 57.8 bits (138), Expect = 3e-08
Identities = 33/120 (27%), Positives = 64/120 (52%), Gaps = 9/120 (7%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+IFVG + + + +E + E +G V+S R++Y++ T +SRG+G+ ++E EKA++
Sbjct: 6 SIFVGNIDFEVPEERIIEELGAVGKVVSFRMVYDKTTGKSRGFGFCEYESPLIVEKALQN 65
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
+ +GRP+ + + +D K + S+ + L N+ D+DNL E+
Sbjct: 66 LK-ISFNGRPVKINYA--------ENDMPAKAREPESQVPEIDNLINVLDNMDKDNLKEV 116
Score = 52.0 bits (123), Expect = 2e-06
Identities = 25/76 (32%), Positives = 45/76 (58%), Gaps = 1/76 (1%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
++F+GN+ FE + + E G G++VS R+ T + +GFG+ +Y S KA +
Sbjct: 6 SIFVGNIDFEVPEERIIEELGAVGKVVSFRMVYDKTTGKSRGFGFCEYESPLIVEKALQN 65
Query: 358 LQGEYINNRPVRLDYS 373
L+ + N RPV+++Y+
Sbjct: 66 LKISF-NGRPVKINYA 80
>7301350 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 611
Score = 57.8 bits (138), Expect = 3e-08
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 29/192 (15%)
Query: 195 PATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTD---------RSRGYGYVDFE 245
P +FVG LSW + LK F + +RV + G+ RSRG+G++ F+
Sbjct: 174 PGKLFVGGLSWQTSSDKLKEYFN----IEESRVKDKAGSRSRKQRIPGLRSRGFGFITFQ 229
Query: 246 DKSYAEKAIK-EMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
+ EK +K +H +DG+ I D + P PR K +F+G +
Sbjct: 230 EPCTVEKVLKVPIH--TLDGKKI--DPKHATPKNRPRQANKTK----------KIFVGGV 275
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYIN 364
S + + + F ++G + + +T++ +GFG+V + + ED + I
Sbjct: 276 SQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFEN-EDVVDRVCEIHFHTIK 334
Query: 365 NRPVRLDYSIPK 376
N+ V + PK
Sbjct: 335 NKKVECKKAQPK 346
>Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 57.4 bits (137), Expect = 4e-08
Identities = 42/169 (24%), Positives = 79/169 (45%), Gaps = 13/169 (7%)
Query: 188 KTELAGEPATI---FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDF 244
K+E EP + F+G LS+ DE L++ FE G + VM + T S G+G+V +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQRGTLTDCVVMRDPNTKCSTGFGFVTY 62
Query: 245 EDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
E A+ +++DGR + + S R+D + + + +F+G +
Sbjct: 63 ATVKEVEAAM-NARPQKVDGRVVEPKRAVS------REDSQRPGAHLTVK---KIFVGGI 112
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+ + +L + F +YG+I + I T + + +GF +V + + K
Sbjct: 113 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 57.4 bits (137), Expect = 4e-08
Identities = 22/76 (28%), Positives = 49/76 (63%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+++VG + +E L F IG + + R++ +R T R RG+ +++F ++ A++A+++
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 257 MHGKEIDGRPINCDMS 272
M+G E +GRP+ +++
Sbjct: 66 MNGAEFNGRPLRVNLA 81
Score = 53.1 bits (126), Expect = 8e-07
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
++++GN F+ + L F G+I +VRI ET +P+GF ++++ A +A E
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 358 LQGEYINNRPVRLD 371
+ G N RP+R++
Sbjct: 66 MNGAEFNGRPLRVN 79
>At5g52040 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 356
Score = 57.4 bits (137), Expect = 4e-08
Identities = 48/180 (26%), Positives = 83/180 (45%), Gaps = 20/180 (11%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F G + + L+ F G V ER D G+ +V ED+ AE AI+ +
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKV-------ER-VDMKAGFAFVYMEDERDAEDAIRAL 55
Query: 258 HGKEID--GRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRD-NLY 314
E GR + + + + GA R +++ PS TLF+ N + R +L
Sbjct: 56 DRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSS-GLRPSKTLFVINFDAQNTRTRDLE 114
Query: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSI 374
F YG+IV+VRI + F ++QY + EDAT+A + + ++ + ++Y++
Sbjct: 115 RHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAV 166
>At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 521
Score = 57.4 bits (137), Expect = 4e-08
Identities = 46/167 (27%), Positives = 74/167 (43%), Gaps = 31/167 (18%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIG--------------GVISARVMYERGTDRSRGYGYVD 243
+F+G L + +E L+ E IG ++ R+M +R + S+GY +V
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKDRDSGDSKGYAFVA 177
Query: 244 FEDKSYAEKAIKEMHGKEID-GRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLG 302
F+ K A+KAI+E+H KE NC +S S K SE + LF+G
Sbjct: 178 FKTKDVAQKAIEELHSKEFKASSTANCSLSLS----------GKTIRCSLSETKNRLFIG 227
Query: 303 NLSFEADRDNLYEIFGKYG----EIVSVRIPTHPETEQPKGFGYVQY 345
N+ D ++ G I ++ PT+ T + +GF +V Y
Sbjct: 228 NIPKNWTEDEFRKVIEDVGPGVENIELIKDPTN--TTRNRGFAFVLY 272
>At1g78260 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 302
Score = 57.4 bits (137), Expect = 4e-08
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG L+W + ++ FE G ++ A ++ ++ T +S+GYG+V F + A +A+ +
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 258 HGKEIDGRPINCDM-STSKPAGAPRDDRAK 286
+ IDGR NC++ S +P +P R +
Sbjct: 79 N-PVIDGRKANCNIASFGRPRPSPPRGRGQ 107
>At1g73530 [R] KOG0118 FOG: RRM domain
Length = 181
Score = 57.4 bits (137), Expect = 4e-08
Identities = 30/97 (30%), Positives = 53/97 (53%), Gaps = 7/97 (7%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P + +G ++V LS+ ++ L+ FE G +I ++ ++ +R +G+ ++ +E
Sbjct: 68 PPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
Query: 247 KSYAEKAIKEMHGKEIDGRPI-------NCDMSTSKP 276
+ A KAI+ MHGK +DGR I DMS +KP
Sbjct: 128 EEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKP 164
Score = 56.6 bits (135), Expect = 7e-08
Identities = 28/109 (25%), Positives = 55/109 (49%), Gaps = 9/109 (8%)
Query: 260 KEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGK 319
++I G I+ +ST + P S P L++ LSF D L + F +
Sbjct: 49 RDIGGVLISSCLSTDSSSSPPSSS---------SGPKTKLYVSGLSFRTTEDTLRDTFEQ 99
Query: 320 YGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPV 368
+G ++ + + +PKGF +++Y + E+A KA +G+ G++++ R +
Sbjct: 100 FGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVI 148
>7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 673
Score = 57.4 bits (137), Expect = 4e-08
Identities = 45/181 (24%), Positives = 87/181 (47%), Gaps = 19/181 (10%)
Query: 193 GEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
G +F G++ + ++ L FE G + R+M + T +RGY +V F ++ A
Sbjct: 161 GNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVN 220
Query: 253 AIKEMHGKEI-DGRPINCDMSTSK--------PAGAPRDDRAKKFGDVPSEP-------- 295
A++++ EI G+ + ++S P +D+ ++FG + +
Sbjct: 221 AVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTGKKIGVTISFN 280
Query: 296 SDTLFLGNLSFEADRDNLYEIFGKYGE-IVSVRIPTHPETEQP-KGFGYVQYGSIEDATK 353
+ LF+GN+ DRD L E F K+ + V I + P+ ++ +GF +++Y S + A+
Sbjct: 281 NHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASL 340
Query: 354 A 354
A
Sbjct: 341 A 341
>YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 250
Score = 57.0 bits (136), Expect = 6e-08
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 190 ELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSY 249
+L + +IFVG ++ + E ++ F+ G + ++Y+R T +GYGY++FE +Y
Sbjct: 58 QLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAY 117
Query: 250 AEKAIKEMHGKEIDGRPI 267
EKA+ +++G E+ G+ I
Sbjct: 118 REKAL-QLNGGELKGKKI 134
>Hs4506449 [R] KOG4733 FOG: RRM domain
Length = 407
Score = 57.0 bits (136), Expect = 6e-08
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+++ L D+ L +P G ++S + + ++ T++ +GYG+VDF+ S A+KA+
Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV--- 114
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
T+ A + AK+ P+ L++ NL D L +
Sbjct: 115 ---------------TALKASGVQAQMAKQQEQDPT----NLYISNLPLSMDEQELEGML 155
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
+G+++S RI + +G G+ + S E G+YI P
Sbjct: 156 KPFGQVISTRI-LRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPP 204
>Hs22049560 [R] KOG0118 FOG: RRM domain
Length = 222
Score = 57.0 bits (136), Expect = 6e-08
Identities = 42/169 (24%), Positives = 79/169 (45%), Gaps = 13/169 (7%)
Query: 188 KTELAGEPATI---FVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDF 244
K+E EP + F+G LS+ +E L++ FE G ++ VM + T SRG+G+V +
Sbjct: 3 KSESPKEPKQLRKLFIGGLSFETTNESLRSHFEQWGTLMDCVVMRDPNTKCSRGFGFVTY 62
Query: 245 EDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNL 304
+ A+ K +DGR + + S R+D + + + +F+G +
Sbjct: 63 ATVEEVDAAMNARPHK-VDGRVVESKRAVS------REDSQRPGAHLTVK---KIFVGGI 112
Query: 305 SFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
+ +L + F +YG+I + I T + + +GF +V + + K
Sbjct: 113 KEDTKEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 305
Score = 57.0 bits (136), Expect = 6e-08
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E IFVG +S +++E L + F G V A+V Y+R RSRG+ +V+F + A
Sbjct: 27 EDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLA 86
Query: 254 I----KEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEAD 309
+ + + GK ++ +P S + +F+G L +
Sbjct: 87 LAAREQTIKGKSVEVKP------------------------AKSRENKKVFVGGLPSDYS 122
Query: 310 RDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
+L F ++G++ + P +T+ + F ++ + E A KA
Sbjct: 123 EQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 57.0 bits (136), Expect = 6e-08
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 15/174 (8%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P ++ + + L + E +++ F IG + S +++ ++ T +S GYG+V++
Sbjct: 33 PNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVR 92
Query: 247 KSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSF 306
+ A +A+ +G + + I + P +D+ K L++ +
Sbjct: 93 EEDALRAVSSFNGLRLQNKTIKVSYA------RPSNDQIK---------GSNLYVSGIPK 137
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQG 360
L IF +G+I++ RI + T KG G+V++ ++A A + L G
Sbjct: 138 SMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
>At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 169
Score = 57.0 bits (136), Expect = 6e-08
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
I+VG L W+ E L F+ G +I V+ +R TDRS+GYG+V F+D A +A K+
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74
Query: 258 HGKEIDGRPINCDMS 272
+ I+GR NC ++
Sbjct: 75 N-PTIEGRITNCKLA 88
>At1g45100 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 497
Score = 57.0 bits (136), Expect = 6e-08
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+ V LS +K F + V+S R++ + GYG+V+F A KA++E
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNH-EGKHVGYGFVEFASAYGANKALEEK 218
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G+ + I P A K TLF+ NL ++ F
Sbjct: 219 NGEYLHNHKILLMKGHESPGFAEEAAITK-----------TLFVANLRDSIQISDIINFF 267
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLD 371
GE+V VR+ + + + G+G+V++ S +A KA GEY++N + LD
Sbjct: 268 KDVGEVVHVRLIVNSQGKH-AGWGFVEFASANEAEKALV-KNGEYLHNYKISLD 319
>At1g22910 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 317
Score = 56.6 bits (135), Expect = 7e-08
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG L+W E +K FE G ++ A V+ ++ + RS+GYG+V F + A A +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 258 HGKEIDGRPINCDMST-----SKPA 277
IDGR NC++++ SKP+
Sbjct: 75 -TPVIDGRRANCNLASLGLQRSKPS 98
>HsM5032089 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 494
Score = 56.2 bits (134), Expect = 9e-08
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 26/184 (14%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+++GRLS+ + ++ F+ G ++ D GYG+V+F+D A+ A+ E+
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEV--------DLKNGYGFVEFDDLRDADDAVYEL 55
Query: 258 HGKEIDGRPI----------NCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFE 307
+GK++ G + + + + R K+G P+ L + NLS
Sbjct: 56 NGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGP-PTRTEYRLIVENLSSR 114
Query: 308 ADRDNLYEIFGKYGEIVSVRIPTHPETEQ-PKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
+L + + GE+ T+ + + K G +++ S D +A E L G +N R
Sbjct: 115 CSWQDLKDYMRQAGEV------TYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGR 168
Query: 367 PVRL 370
+RL
Sbjct: 169 KIRL 172
>HsM18152777 [R] KOG0118 FOG: RRM domain
Length = 261
Score = 56.2 bits (134), Expect = 9e-08
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 295 PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
P+ +LF+ N++ ++L FG+YG IV V IP T +P+GF YVQ+ + DA A
Sbjct: 8 PNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 355 FEGLQGEYINNRPVRLDYS 373
L +++ R + + ++
Sbjct: 68 LYNLNRKWVCGRQIEIQFA 86
>Hs21361282 [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 494
Score = 56.2 bits (134), Expect = 9e-08
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 26/184 (14%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+++GRLS+ + ++ F+ G ++ D GYG+V+F+D A+ A+ E+
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEV--------DLKNGYGFVEFDDLRDADDAVYEL 55
Query: 258 HGKEIDGRPI----------NCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFE 307
+GK++ G + + + + R K+G P+ L + NLS
Sbjct: 56 NGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGP-PTRTEYRLIVENLSSR 114
Query: 308 ADRDNLYEIFGKYGEIVSVRIPTHPETEQ-PKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
+L + + GE+ T+ + + K G +++ S D +A E L G +N R
Sbjct: 115 CSWQDLKDYMRQAGEV------TYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGR 168
Query: 367 PVRL 370
+RL
Sbjct: 169 KIRL 172
>At1g33470 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 117
Score = 56.2 bits (134), Expect = 9e-08
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+FVG L+W L+ FE G ++ A V+ ++ + RS+GYG+V F D A+KA +
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD- 67
Query: 258 HGKEIDGRPINCDMST-----SKPA 277
IDGR NC+++ SKP+
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPS 92
>CE13934 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 248
Score = 55.8 bits (133), Expect = 1e-07
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG L + D+ L FE G + A V+ +R T +SRGYG+V +D++ AE+A K+
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDP 96
Query: 258 HGKEIDGRPINCDMS 272
+ IDGR N +++
Sbjct: 97 N-PIIDGRKANVNLA 110
>At4g19610 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 772
Score = 55.8 bits (133), Expect = 1e-07
Identities = 44/191 (23%), Positives = 88/191 (46%), Gaps = 27/191 (14%)
Query: 203 LSWSIDDEWLKTEFEPI---GGVISARVMYERGTDR--SRGYGYVDFEDKSYAEKAIKEM 257
LS+ DE LK F + G ++S ++ + ++ S GYG+V+F+ A +++
Sbjct: 550 LSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDL 609
Query: 258 H---------------GKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLG 302
G +DG + +K R D+ K + +P L +
Sbjct: 610 QLIGLDGVEWHFLLWQGTVLDGHALILRFCENK-----RSDKVGKDSN-KDKPCTKLHVK 663
Query: 303 NLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEY 362
N++FEA + L ++F +G+I S+R+P Q G+ +V++ + ++A A + L +
Sbjct: 664 NIAFEATKRELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQEALNAKKALASTH 722
Query: 363 INNRPVRLDYS 373
R + L+++
Sbjct: 723 FYGRHLVLEWA 733
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 55.8 bits (133), Expect = 1e-07
Identities = 41/173 (23%), Positives = 84/173 (47%), Gaps = 21/173 (12%)
Query: 194 EPAT-IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEK 252
+P T + V L ++ + +++ F G V S +++ ++ T +S GYG+V++ + AEK
Sbjct: 107 DPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEK 166
Query: 253 AIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDN 312
AI ++G + + I +S ++P+ S L++ L + +
Sbjct: 167 AINALNGLRLQNKTIK--VSIARPSS-------------ESIKGANLYVSGLPKNMTQSD 211
Query: 313 LYEIFGKYGEIVSVRIPTHPETEQ-----PKGFGYVQYGSIEDATKAFEGLQG 360
L +F YG+I++ RI T++ KG G++++ +A +A + L G
Sbjct: 212 LESLFSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
>SPAC16E8.06c [R] KOG0118 FOG: RRM domain
Length = 438
Score = 55.5 bits (132), Expect = 2e-07
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 233 TDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVP 292
++R Y+ F D S A A+ ++G R + D S S P +P
Sbjct: 222 SERDTVNAYIVFRDSSSARSALS-LNGTMFMDRHLRVD-SVSHP--------------MP 265
Query: 293 SEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDAT 352
+ +F+GNL+FEA+ + L+ FG G I VRI P+T KGF Y+Q+
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 353 KA 354
KA
Sbjct: 326 KA 327
>At2g21440 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 1003
Score = 55.5 bits (132), Expect = 2e-07
Identities = 26/78 (33%), Positives = 43/78 (54%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
L + NL F+A ++ +F G + V IP + ET PKGF +V++ +DA A +
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 359 QGEYINNRPVRLDYSIPK 376
G RP+ +D+++PK
Sbjct: 393 NGHMFGKRPIAVDWAVPK 410
>Hs5803036 [R] KOG0118 FOG: RRM domain
Length = 305
Score = 55.1 bits (131), Expect = 2e-07
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+G L+ + L+ FE G + V+ T RSR +G+V + + A+ A+
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+DG + + S+ A AK LF+G L + +L E F
Sbjct: 69 P-HAVDGNTVELKRAVSREDSARPGAHAKV---------KKLFVGGLKGDVAEGDLIEHF 118
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA----FEGLQGEYI 363
++G + I ++ + +GFG+V + + + A KA F +QG +
Sbjct: 119 SQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRV 168
>Hs20560400 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 234
Score = 55.1 bits (131), Expect = 2e-07
Identities = 25/73 (34%), Positives = 41/73 (55%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
TL + NL++ D+L +F KYG + V IP P T+ P+GF +V++ DA A
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQDAEAA 74
Query: 358 LQGEYINNRPVRL 370
+ G ++ R +R+
Sbjct: 75 MDGAVLDERELRV 87
>Hs7706326 [R] KOG0114 Predicted RNA-binding protein (RRM superfamily)
Length = 125
Score = 54.7 bits (130), Expect = 3e-07
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 291 VPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIED 350
+P E + L++ NL ++ + +Y+IFGKYG I +R+ PET +G YV Y I D
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYEDIFD 69
Query: 351 ATKAFEGLQGEYINNR 366
A A + L G + NR
Sbjct: 70 AKNACDHLSGFNVCNR 85
>Hs4759098 [R] KOG0118 FOG: RRM domain
Length = 288
Score = 54.7 bits (130), Expect = 3e-07
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 279 APRDDRAKKFGDVPS-EPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQP 337
+P R + G+ + +P+ L + LS +L E+F KYG I V I ++ +
Sbjct: 99 SPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158
Query: 338 KGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIPK 376
+GF +V + +++DA +A E G ++ R +R+D+SI K
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197
>Hs15055543 [A] KOG4207 Predicted splicing factor SR protein superfamily
Length = 282
Score = 54.7 bits (130), Expect = 3e-07
Identities = 25/73 (34%), Positives = 41/73 (55%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
TL + NL++ D+L +F KYG + V IP P T+ P+GF +V++ DA A
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 358 LQGEYINNRPVRL 370
+ G ++ R +R+
Sbjct: 75 MDGAELDGRELRV 87
>CE05167 [A] KOG0128 RNA-binding protein SART3 (RRM superfamily)
Length = 836
Score = 54.7 bits (130), Expect = 3e-07
Identities = 51/190 (26%), Positives = 84/190 (43%), Gaps = 17/190 (8%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDR-SRGYGYVDFE 245
P TE + TIFV L ++ ++ ++ E GV S R + +D RG+ YV E
Sbjct: 587 PGTE---DARTIFVSNLDFTTTEDEIRQAIE---GVASIRFARKANSDLVHRGFAYVVME 640
Query: 246 DKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLS 305
+ A++A+ + + GRP+ A P KF + +F+ N+
Sbjct: 641 NDQKAQQALLKDR-VPVKGRPMFIS------ANDPEKRVGFKFSTTLEKSK--VFVRNVH 691
Query: 306 FEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINN 365
F+A D L +F K+G + SVR TH + +PKG +V + + A K +
Sbjct: 692 FQATDDELKALFSKFGTVTSVRRVTHKD-GKPKGIAFVDFDTEASAQKCVASGDKLMLRE 750
Query: 366 RPVRLDYSIP 375
R + + S P
Sbjct: 751 RELEVALSNP 760
>7291222 [R] KOG0151 Predicted splicing regulator contains RRM SWAP and RPR
domains
Length = 957
Score = 54.7 bits (130), Expect = 3e-07
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 266 PINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDT-LFLGNLSFEADRDNLYEIFGKYGEIV 324
P + +TS+ + + ++ + GD P+ T L+LGNL+ + L EIFG+YG +
Sbjct: 187 PSSSVSTTSQNSSSSKESGSFDTGD----PNTTNLYLGNLNPKISEQQLMEIFGRYGPLA 242
Query: 325 SVRI---PTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
S++I + E ++ + G+V Y S +DA +A + L G YI +RL +
Sbjct: 243 SIKIMWPRSEEEKQRGRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGW 293
>YBR212w [R] KOG0118 FOG: RRM domain
Length = 672
Score = 54.3 bits (129), Expect = 4e-07
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 17/150 (11%)
Query: 238 GYGYVDFEDKSYAEKAIKEMHGKEIDGRPI-NCDMSTSKPAGAPRDDRAKKFG------- 289
GY +V+FE + A+ A+ ++ P+ N T+ P R +
Sbjct: 129 GYCFVEFETQKDAKFALS------LNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATL 182
Query: 290 --DVPSEPSDTLFLGNLSFEADRDNLYEIFG-KYGEIVSVRIPTHPETEQPKGFGYVQYG 346
+PS P +LF+G+LS A +L +F ++ + +VR+ T P T + FG+V++G
Sbjct: 183 QSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFG 242
Query: 347 SIEDATKAFEGLQGEYINNRPVRLDYSIPK 376
++ +A + G++ R +R+ Y+ P+
Sbjct: 243 DEDERRRALIEMSGKWFQGRALRVAYATPR 272
>HsM13236563 [R] KOG0226 RNA-binding proteins
Length = 451
Score = 54.3 bits (129), Expect = 4e-07
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IF G L ++D+ L F + A+V+ ++ T +++GYG+V F+D S +A++EM
Sbjct: 354 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 413
Query: 258 HGKEIDGRPINCDMSTSK 275
+GK + RPI S K
Sbjct: 414 NGKYVGSRPIKLRKSMWK 431
>Hs7657506 [R] KOG4733 FOG: RRM domain
Length = 411
Score = 54.3 bits (129), Expect = 4e-07
Identities = 34/151 (22%), Positives = 64/151 (41%), Gaps = 23/151 (15%)
Query: 217 EPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKP 276
+P G ++S + + ++ T++ +GYG+VDF+ + A+KA+ S
Sbjct: 73 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV------------------ASLK 114
Query: 277 AGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQ 336
A + AK+ P+ L++ NL D L + +G ++S RI
Sbjct: 115 ANGVQAQMAKQQEQDPT----NLYISNLPISMDEQELENMLKPFGHVISTRI-LRDANGV 169
Query: 337 PKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
+G G+ + S E + G+Y+ P
Sbjct: 170 SRGVGFARMESTEKCEVVIQHFNGKYLKTPP 200
>Hs21359951 [R] KOG0226 RNA-binding proteins
Length = 480
Score = 54.3 bits (129), Expect = 4e-07
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IF G L ++D+ L F + A+V+ ++ T +++GYG+V F+D S +A++EM
Sbjct: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
Query: 258 HGKEIDGRPINCDMSTSK 275
+GK + RPI S K
Sbjct: 443 NGKYVGSRPIKLRKSMWK 460
>CE09667 [A] KOG0121 Nuclear cap-binding protein complex subunit CBP20 (RRM
superfamily)
Length = 154
Score = 54.3 bits (129), Expect = 4e-07
Identities = 31/105 (29%), Positives = 55/105 (51%), Gaps = 3/105 (2%)
Query: 271 MSTSKPAGAPRDDRAK---KFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVR 327
+ K A RD R + + + S TL++GNLS+ D +YE+FG+ G++ V
Sbjct: 8 LDNPKEISAYRDQRYQGTVRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVI 67
Query: 328 IPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDY 372
+ + P GF +V+Y + EDA A + + +++R +R D+
Sbjct: 68 MGLDRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIRADW 112
>At3g06970 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 272
Score = 54.3 bits (129), Expect = 4e-07
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 1/77 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG L+W + L+ FE G V+ A V+ E RS+GYG++ F D +A++
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNS 73
Query: 258 HGKEIDGRPINCDMSTS 274
IDGR NC+++++
Sbjct: 74 K-PIIDGRTTNCNLASA 89
>7299787 [R] KOG0118 FOG: RRM domain
Length = 428
Score = 54.3 bits (129), Expect = 4e-07
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 19/168 (11%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IF+G LS E L+ F G V A V+ + ++ SRG+G+V + D E ++
Sbjct: 34 IFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVE-IVQRA 92
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPS-----------EPSDTLFLGNLSF 306
ID + + + PR D K+ G V S S +FLG L
Sbjct: 93 RPHTIDNKIVETKHA------LPRQD-FKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKE 145
Query: 307 EADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
D + + E F ++G + SV++ ET + + FG++++ A KA
Sbjct: 146 YHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKA 193
>SPBC29A3.07c [R] KOG0114 Predicted RNA-binding protein (RRM superfamily)
Length = 137
Score = 53.9 bits (128), Expect = 5e-07
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 291 VPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIED 350
V E + LF+ NLSF+ + +Y++FG+YG + +R+ T Q +G +V Y +++D
Sbjct: 6 VNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENVQD 62
Query: 351 ATKAFEGLQGEYINNRPVRLDYSIPK 376
A +A E L G +R + + Y P+
Sbjct: 63 ARRACEKLSGYNFMDRYLVVHYYNPE 88
>Hs9558733 [R] KOG0118 FOG: RRM domain
Length = 282
Score = 53.9 bits (128), Expect = 5e-07
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 279 APRDDRAKKFGDVPS-EPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQP 337
+P +R + G + +P+ L + LS +L E+F +YG + V + T +
Sbjct: 100 SPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS 159
Query: 338 KGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIPK 376
+GF +V + I+D+ +A E G ++ R +R+DYSI K
Sbjct: 160 RGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK 198
>Hs8400724 [R] KOG4733 FOG: RRM domain
Length = 389
Score = 53.9 bits (128), Expect = 5e-07
Identities = 32/151 (21%), Positives = 65/151 (42%), Gaps = 23/151 (15%)
Query: 217 EPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKP 276
+P G ++S + + ++ T++ +GYG+VDF+ + A+KA+ + + +
Sbjct: 50 QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQ----------- 98
Query: 277 AGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQ 336
AK+ P+ L++ NL D L + +G+++S RI +
Sbjct: 99 -------MAKQQEQDPT----NLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDSSGT 146
Query: 337 PKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
+G G+ + S E G++I P
Sbjct: 147 SRGVGFARMESTEKCEAVIGHFNGKFIKTPP 177
>Hs8400722 [R] KOG4733 FOG: RRM domain
Length = 373
Score = 53.9 bits (128), Expect = 5e-07
Identities = 32/151 (21%), Positives = 65/151 (42%), Gaps = 23/151 (15%)
Query: 217 EPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKP 276
+P G ++S + + ++ T++ +GYG+VDF+ + A+KA+ + + +
Sbjct: 50 QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQ----------- 98
Query: 277 AGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQ 336
AK+ P+ L++ NL D L + +G+++S RI +
Sbjct: 99 -------MAKQQEQDPT----NLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDSSGT 146
Query: 337 PKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
+G G+ + S E G++I P
Sbjct: 147 SRGVGFARMESTEKCEAVIGHFNGKFIKTPP 177
>Hs8400720 [R] KOG4733 FOG: RRM domain
Length = 419
Score = 53.9 bits (128), Expect = 5e-07
Identities = 32/151 (21%), Positives = 65/151 (42%), Gaps = 23/151 (15%)
Query: 217 EPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKP 276
+P G ++S + + ++ T++ +GYG+VDF+ + A+KA+ + + +
Sbjct: 83 QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQ----------- 131
Query: 277 AGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQ 336
AK+ P+ L++ NL D L + +G+++S RI +
Sbjct: 132 -------MAKQQEQDPT----NLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDSSGT 179
Query: 337 PKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
+G G+ + S E G++I P
Sbjct: 180 SRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
>Hs8400718 [R] KOG4733 FOG: RRM domain
Length = 406
Score = 53.9 bits (128), Expect = 5e-07
Identities = 32/151 (21%), Positives = 65/151 (42%), Gaps = 23/151 (15%)
Query: 217 EPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKP 276
+P G ++S + + ++ T++ +GYG+VDF+ + A+KA+ + + +
Sbjct: 83 QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQ----------- 131
Query: 277 AGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQ 336
AK+ P+ L++ NL D L + +G+++S RI +
Sbjct: 132 -------MAKQQEQDPT----NLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDSSGT 179
Query: 337 PKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
+G G+ + S E G++I P
Sbjct: 180 SRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
>Hs4506447 [R] KOG4733 FOG: RRM domain
Length = 403
Score = 53.9 bits (128), Expect = 5e-07
Identities = 32/151 (21%), Positives = 65/151 (42%), Gaps = 23/151 (15%)
Query: 217 EPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKP 276
+P G ++S + + ++ T++ +GYG+VDF+ + A+KA+ + + +
Sbjct: 83 QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQ----------- 131
Query: 277 AGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQ 336
AK+ P+ L++ NL D L + +G+++S RI +
Sbjct: 132 -------MAKQQEQDPT----NLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDSSGT 179
Query: 337 PKGFGYVQYGSIEDATKAFEGLQGEYINNRP 367
+G G+ + S E G++I P
Sbjct: 180 SRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
>CE29126 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 580
Score = 53.9 bits (128), Expect = 5e-07
Identities = 45/188 (23%), Positives = 83/188 (43%), Gaps = 7/188 (3%)
Query: 188 KTELAGEPA---TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDF 244
K EL E T+ + +++ L+ F +G V R++ + T RS+G YV+F
Sbjct: 159 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 218
Query: 245 EDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDV-PSEPSDT-LFLG 302
D+ + ++G+ + G P+ + ++ A A G V P T + +
Sbjct: 219 WDEESVPLGL-ALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVE 277
Query: 303 NLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEY 362
NL + D + +IF +G I + + E +GF + + + +DA K+ E L
Sbjct: 278 NLHPKIDEKMIRDIFESFGRIEKIDLEVDSNREN-RGFATITFRNADDAQKSCEQLNNFE 336
Query: 363 INNRPVRL 370
+ R +RL
Sbjct: 337 LAGRCIRL 344
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 53.9 bits (128), Expect = 5e-07
Identities = 21/75 (28%), Positives = 49/75 (65%)
Query: 191 LAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYA 250
+A + +++VG + + +E + F +G V + R++Y+R T R RG+ +V+F +++ A
Sbjct: 1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60
Query: 251 EKAIKEMHGKEIDGR 265
++A+++++G +GR
Sbjct: 61 QRAVEQLNGVAFNGR 75
Score = 50.1 bits (118), Expect = 7e-06
Identities = 22/76 (28%), Positives = 43/76 (55%)
Query: 298 TLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEG 357
++++GN+ ++ + + F G + +VRI ET +P+GF +V++ A +A E
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 358 LQGEYINNRPVRLDYS 373
L G N R +R++Y+
Sbjct: 67 LNGVAFNGRNLRVNYA 82
>At4g09040 [R] KOG0118 FOG: RRM domain
Length = 225
Score = 53.9 bits (128), Expect = 5e-07
Identities = 39/137 (28%), Positives = 62/137 (44%), Gaps = 12/137 (8%)
Query: 238 GYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAG--APRDDRAKKFGDVPSE- 294
G +++ A A + E +GR + D + +K APR+ PS
Sbjct: 56 GLVFIEMASPEEASTAFISLESYEYEGRRLKVDYAKTKKKKTYAPRE--------TPSPV 107
Query: 295 PSDTLFLGNLSFEADRDNLYEIF-GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATK 353
P+ LF+ NL+FEA +L E F G +VS + H + G+G+V + + + A
Sbjct: 108 PTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEA 167
Query: 354 AFEGLQGEYINNRPVRL 370
A QG+ RP+RL
Sbjct: 168 ALIEFQGKDFLGRPIRL 184
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/71 (39%), Positives = 40/71 (55%), Gaps = 1/71 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEP-IGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
+FV L++ + LK F+ G V+S V++ RS GYG+V F+ K AE A+ E
Sbjct: 112 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 171
Query: 257 MHGKEIDGRPI 267
GK+ GRPI
Sbjct: 172 FQGKDFLGRPI 182
>At3g15010 [R] KOG0118 FOG: RRM domain
Length = 404
Score = 53.9 bits (128), Expect = 5e-07
Identities = 42/171 (24%), Positives = 79/171 (45%), Gaps = 13/171 (7%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+ L+ E L++ F G + A V+ ++ T +S+GYG+V F A A+KE
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE- 135
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
K+IDGR ++ ++ A + + D+ +++ N+ F+ D L F
Sbjct: 136 PSKKIDGR-----VTVTQLAASGNQGTGSQIADISMR---KIYVANVPFDMPADRLLNHF 187
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAF----EGLQGEYIN 364
YG++ + T + +GF Y + E A A + + G+++N
Sbjct: 188 MAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLN 238
>At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein
Length = 849
Score = 53.9 bits (128), Expect = 5e-07
Identities = 28/85 (32%), Positives = 46/85 (53%), Gaps = 1/85 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFV W E LKT FE G + V+ ++ T R +GYG+V F+ + A +A+K
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRD 282
K + R + C++++ KP A ++
Sbjct: 470 E-KRMYNRIVVCNLASEKPGKAGKE 493
>At3g20930_2 [R] KOG0118 FOG: RRM domain
Length = 92
Score = 53.9 bits (128), Expect = 5e-07
Identities = 24/79 (30%), Positives = 50/79 (62%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F+ LS+ ++ L+ FE G ++ +++ ++ + RS+GY ++++ + A A+KEM
Sbjct: 2 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 61
Query: 258 HGKEIDGRPINCDMSTSKP 276
+GK I+G I D++ +KP
Sbjct: 62 NGKIINGWMIVVDVAKTKP 80
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 53.5 bits (127), Expect = 6e-07
Identities = 34/163 (20%), Positives = 76/163 (45%), Gaps = 15/163 (9%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+ V L ++ + L++ F IG V SA+++ ++ S GYG+V++ AE+AI +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 258 HGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIF 317
+G + + I +S ++P+ D L++ L + ++ ++F
Sbjct: 82 NGLRLQSKTIK--VSYARPSSEVIKDA-------------NLYISGLPRTMTQKDVEDMF 126
Query: 318 GKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQG 360
++G I++ R+ T +G ++++ +A +A G
Sbjct: 127 SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>Hs21361783 [R] KOG0118 FOG: RRM domain
Length = 261
Score = 53.5 bits (127), Expect = 6e-07
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 295 PSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
P+ +LF+ N++ ++L FG+YG IV V IP T +P+GF YVQ+ + A A
Sbjct: 8 PNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRGAEDA 67
Query: 355 FEGLQGEYINNRPVRLDYS 373
L +++ R + + ++
Sbjct: 68 LYNLNRKWVCGRQIEIQFA 86
>Hs16519537 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 481
Score = 53.5 bits (127), Expect = 6e-07
Identities = 27/87 (31%), Positives = 47/87 (53%)
Query: 194 EPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKA 253
E +F+ L D L F P G V+SA+V +R T++S+ +G+V F++ + A+ A
Sbjct: 394 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 453
Query: 254 IKEMHGKEIDGRPINCDMSTSKPAGAP 280
I+ M+G +I + + + K A P
Sbjct: 454 IQAMNGFQIGMKRLKVQLKRPKDANRP 480
>ECU07g0340 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 333
Score = 53.5 bits (127), Expect = 6e-07
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 241 YVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLF 300
+ DF++ A ++E+ G +GR + +++ P+ P++ R P E ++
Sbjct: 94 FADFDNPHAAYLCMREIDGMVFEGRALKVGRTSTFPSEIPKELRP------PDE--SIVY 145
Query: 301 LGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKA 354
+ N+ + + L +IF K GEI VR+ + + KG+GYVQ+ DA KA
Sbjct: 146 ISNIDLNIEEEQLEDIFKKMGEIKGVRL-VYESSFMHKGYGYVQFSRCIDAKKA 198
>CE27875 [R] KOG0114 Predicted RNA-binding protein (RRM superfamily)
Length = 215
Score = 53.5 bits (127), Expect = 6e-07
Identities = 32/90 (35%), Positives = 49/90 (53%), Gaps = 6/90 (6%)
Query: 277 AGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQ 336
A A R +R K +P E + L++ NL ++ + +YEIFGK+G + +R+ ET
Sbjct: 2 AMANRQNRGAK---LPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAET-- 56
Query: 337 PKGFGYVQYGSIEDATKAFEGLQGEYINNR 366
+G +V Y I DA A E L G ++NR
Sbjct: 57 -RGTAFVVYEDIFDAKTACEHLSGYNVSNR 85
>CE25017 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 611
Score = 53.5 bits (127), Expect = 6e-07
Identities = 43/168 (25%), Positives = 74/168 (43%), Gaps = 23/168 (13%)
Query: 187 PKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFED 246
P T AG+ I+VG + + ++ L FE G + R+M + + SRGY +V + +
Sbjct: 191 PATGPAGQGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCN 250
Query: 247 KSYAEKAIKEMHGKEID-GRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLS 305
K A A K G EI G+P+ ++S + + LF+GN+
Sbjct: 251 KEDAAAAAKTYDGHEISTGKPLKVNVSIA---------------------NTRLFIGNIP 289
Query: 306 FEADRDNLYEIFGKYGE-IVSVRIPTHPETEQPKGFGYVQYGSIEDAT 352
+D + E + E +V V + + P+ E+ K G+ I+ T
Sbjct: 290 KTKSKDEILEELKTHAEGVVDVIVYSVPDNEKIKNRGFCFVDFIDHKT 337
>At1g29400 [D] KOG4660 Protein Mei2 essential for commitment to meiosis and
related proteins
Length = 779
Score = 53.5 bits (127), Expect = 6e-07
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FV ++ +++D L FE G + R +Y T + RG+ + + D A A++
Sbjct: 159 TLFVRNINSNVEDSELTALFEQYGDI---RTLYT--TCKHRGFVMISYYDIRSARMAMRS 213
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEI 316
+ K + R ++ S P+D+ ++K TL + NL D+L+ I
Sbjct: 214 LQNKPLRRRKLDIHFSI------PKDNPSEK-----DMNQGTLVVFNLDPSISNDDLHGI 262
Query: 317 FGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSIP 375
FG +GEI +R ET + +V++ + A A + L I + ++++ S P
Sbjct: 263 FGAHGEIKEIR-----ETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSRP 316
>YPL043w [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 685
Score = 53.1 bits (126), Expect = 8e-07
Identities = 52/209 (24%), Positives = 86/209 (40%), Gaps = 38/209 (18%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FV + + DE L F + A V+ + RSRG+G+V F + ++A+ +
Sbjct: 27 TLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAK 85
Query: 257 MHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDV----PSEPSDTLFLGNLSFEADRD- 311
+ +G + D+ A R DR+KK +V E S+ + N E D D
Sbjct: 86 ARKTKFNGHILRVDI-------AKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADG 138
Query: 312 ------------------------NLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGS 347
L +IFG+YG +V IP + + GF +V
Sbjct: 139 EDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKL-CGFAFVTMKK 197
Query: 348 IEDATKAFEGLQGEYINNRPVRLDYSIPK 376
I + A E + I+ R V +D+++ K
Sbjct: 198 ISNCRIALENTKDLKIDGRKVAVDFAVQK 226
>Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 614
Score = 53.1 bits (126), Expect = 8e-07
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FV R+++ + L+ EFE G + ++Y + + + RGY ++++E + A K
Sbjct: 281 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 340
Query: 257 MHGKEIDGRPINCDMSTSK 275
GK+IDGR + D+ +
Sbjct: 341 ADGKKIDGRRVLVDVERGR 359
>Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 437
Score = 53.1 bits (126), Expect = 8e-07
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 197 TIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKE 256
T+FV R+++ + L+ EFE G + ++Y + + + RGY ++++E + A K
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 257 MHGKEIDGRPINCDMSTSK 275
GK+IDGR + D+ +
Sbjct: 164 ADGKKIDGRRVLVDVERGR 182
>Hs14192947 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 216
Score = 53.1 bits (126), Expect = 8e-07
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
IFVG L + D L+ FE G + A V+ +R T +SRGYG+V D++ AE+A K+
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72
Query: 258 HGKEIDGRPINCDMS 272
+ IDGR N +++
Sbjct: 73 N-PIIDGRKANVNLA 86
>CE24459 [R] KOG0226 RNA-binding proteins
Length = 302
Score = 53.1 bits (126), Expect = 8e-07
Identities = 28/78 (35%), Positives = 40/78 (50%)
Query: 198 IFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEM 257
+F G L + DE L F A+V+ E T++S+GYG+V F D +A++EM
Sbjct: 205 VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREM 264
Query: 258 HGKEIDGRPINCDMSTSK 275
GK + RPI S K
Sbjct: 265 DGKYVGNRPIKLRKSAWK 282
Score = 51.2 bits (121), Expect = 3e-06
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 299 LFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGL 358
+F G+L E + L + F KY ++ T + KG+G+V + ED +A +
Sbjct: 205 VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREM 264
Query: 359 QGEYINNRPVRL 370
G+Y+ NRP++L
Sbjct: 265 DGKYVGNRPIKL 276
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,223,587
Number of Sequences: 60738
Number of extensions: 605437
Number of successful extensions: 3046
Number of sequences better than 1.0e-05: 302
Number of HSP's better than 0.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 2001
Number of HSP's gapped (non-prelim): 787
length of query: 445
length of database: 30,389,216
effective HSP length: 110
effective length of query: 335
effective length of database: 23,708,036
effective search space: 7942192060
effective search space used: 7942192060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)