ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII2829  suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII2829 996529 995621 -303 
         (303 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR161c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...    53   6e-07

>YGR161c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 263

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 25/33 (75%), Positives = 31/33 (93%)

Query: 90  RRLSSEEIINQMEKEQDAMVMRLLKEIDLLREE 122
           RRLS EEIIN+MEKEQDA+V+RLL+EI+ L+EE
Sbjct: 61  RRLSREEIINEMEKEQDAIVVRLLREIETLKEE 93


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.309    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,301,582
Number of Sequences: 60738
Number of extensions: 390638
Number of successful extensions: 881
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 1
length of query: 303
length of database: 30,389,216
effective HSP length: 106
effective length of query: 197
effective length of database: 23,950,988
effective search space: 4718344636
effective search space used: 4718344636
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)