ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2888 good I KOG3006 Lipid transport and metabolism Transthyretin and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2888 1017212 1016778 -145
(145 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.04 [I] KOG3006 Transthyretin and related proteins 88 3e-18
CE12662 [I] KOG3006 Transthyretin and related proteins 76 2e-14
CE18458 [I] KOG3006 Transthyretin and related proteins 72 3e-13
At5g58220 [I] KOG3006 Transthyretin and related proteins 62 3e-10
>SPCC285.04 [I] KOG3006 Transthyretin and related proteins
Length = 124
Score = 88.2 bits (217), Expect = 3e-18
Identities = 51/141 (36%), Positives = 72/141 (50%), Gaps = 29/141 (20%)
Query: 5 LTCHILDTVSGKPAESVVCTLSHLTLNSDNDTAIIESESQFAIAKTNADGRVTQWIFKPD 64
LT HIL+T+SG PA V L L + + S+ A +TNA+GRVT W
Sbjct: 13 LTAHILNTMSGIPAAGVQVALFKL------NESPTPSQQFIATTETNANGRVTSW----- 61
Query: 65 PSERSHLKELGVVETSTGKLEWQSLKPGTYKIRFHTGNYFKQKKEPSFFPFVDIVFEVSD 124
++ +++ G Y RF TG YF SF+P+V++ ++
Sbjct: 62 ------------------NVDLSTVESGIYTFRFETGAYFDSLGVTSFYPYVEMAVRINK 103
Query: 125 TRHYHIPLLLSNYGYSTYRGS 145
+HYHIPLLL+ YGY+TYRGS
Sbjct: 104 GQHYHIPLLLAPYGYTTYRGS 124
>CE12662 [I] KOG3006 Transthyretin and related proteins
Length = 121
Score = 75.9 bits (185), Expect = 2e-14
Identities = 35/69 (50%), Positives = 50/69 (71%), Gaps = 5/69 (7%)
Query: 82 GKLEWQS----LKPGTYKIRFHTGNYFKQKKEPSFFPFVDIVFEVSD-TRHYHIPLLLSN 136
G+++W S L PGTY++ + T Y+K K SF+P+V++VF + D T+HYH+PL LS
Sbjct: 53 GRVDWVSPDFTLIPGTYRLVYITEPYYKAKNVESFYPYVEVVFNIRDATQHYHVPLTLSP 112
Query: 137 YGYSTYRGS 145
+GYSTYRGS
Sbjct: 113 WGYSTYRGS 121
>CE18458 [I] KOG3006 Transthyretin and related proteins
Length = 190
Score = 71.6 bits (174), Expect = 3e-13
Identities = 33/69 (47%), Positives = 49/69 (70%), Gaps = 5/69 (7%)
Query: 82 GKLEWQS----LKPGTYKIRFHTGNYFKQKKEPSFFPFVDIVFEVSD-TRHYHIPLLLSN 136
G+++W S L PGTY++ + T Y+ K SF+P+V++VF + + T+HYH+PL LS
Sbjct: 122 GRVDWVSPDFTLIPGTYRLVYITEPYYTAKNVESFYPYVEVVFNIRNATQHYHVPLTLSP 181
Query: 137 YGYSTYRGS 145
+GYSTYRGS
Sbjct: 182 WGYSTYRGS 190
>At5g58220 [I] KOG3006 Transthyretin and related proteins
Length = 324
Score = 62.0 bits (149), Expect = 3e-10
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 36/149 (24%)
Query: 4 PLTCHILDTVSGKPAESVVCTLSHLTLNSDNDTAIIESE----SQFAIAKTNADGRVTQW 59
P+T H+LD G PA V L + + + S + T+ DGR
Sbjct: 205 PITTHVLDVSRGAPAAGVEVHLE--VWSGTTGPSFVHGGGGVWSSVGTSATDRDGRSGPL 262
Query: 60 IFKPDPSERSHLKELGVVETSTGKLEWQSLKPGTYKIRFHTGNYFKQKKEPSFFPFVDIV 119
+ D +L PGTY+I F T Y FFP+V IV
Sbjct: 263 MDLVD-----------------------ALNPGTYRISFDTAKY----SPGCFFPYVSIV 295
Query: 120 FEVSDTR---HYHIPLLLSNYGYSTYRGS 145
F+V++++ H+H+PLLL+ + +STYRGS
Sbjct: 296 FQVTESQKWEHFHVPLLLAPFSFSTYRGS 324
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,772,181
Number of Sequences: 60738
Number of extensions: 399906
Number of successful extensions: 877
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 5
length of query: 145
length of database: 30,389,216
effective HSP length: 96
effective length of query: 49
effective length of database: 24,558,368
effective search space: 1203360032
effective search space used: 1203360032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)