ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII2924  suspect: LH   U     KOG3498  Intracellular trafficking, secretion, and vesicular transport  Preprotein translocase, gamma subunit

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII2924 1027661 1027452 -70  
         (70 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR086c [U] KOG3498 Preprotein translocase gamma subunit               70   5e-13
SPAC4G8.02c [U] KOG3498 Preprotein translocase gamma subunit           47   4e-06

>YDR086c [U] KOG3498 Preprotein translocase gamma subunit
          Length = 80

 Score = 70.1 bits (170), Expect = 5e-13
 Identities = 35/68 (51%), Positives = 40/68 (58%)

Query: 3  KQNAQFDKLVETPLEFVKEGNQFLQKCKKPSKKEYLKXXXXXXXXXXXXXXXXXXXKLIH 62
          + N Q +KLVE P+EFV+EG QFL KCKKP  KEY K                   KLIH
Sbjct: 13 QSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH 72

Query: 63 IPIRYLIV 70
          IPIRY+IV
Sbjct: 73 IPIRYVIV 80


>SPAC4G8.02c [U] KOG3498 Preprotein translocase gamma subunit
          Length = 70

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 22/62 (35%), Positives = 31/62 (49%)

Query: 9  DKLVETPLEFVKEGNQFLQKCKKPSKKEYLKXXXXXXXXXXXXXXXXXXXKLIHIPIRYL 68
          D L + P  F KEG+ F+++C KP +KE+L                    KLIHIPI  +
Sbjct: 6  DDLFQIPKNFYKEGSHFIKRCVKPDRKEFLSISKAVATGFVLMGLIGYIIKLIHIPINKV 65

Query: 69 IV 70
          +V
Sbjct: 66 LV 67


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,097,209
Number of Sequences: 60738
Number of extensions: 73007
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 2
length of query: 70
length of database: 30,389,216
effective HSP length: 46
effective length of query: 24
effective length of database: 27,595,268
effective search space: 662286432
effective search space used: 662286432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)