ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2929 good A KOG3911 RNA processing and modification Nucleolar protein NOP52/RRP1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2929 1028704 1027922 -261
(261 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR087c [A] KOG3911 Nucleolar protein NOP52/RRP1 258 5e-69
Hs4503247 [A] KOG3911 Nucleolar protein NOP52/RRP1 105 6e-23
Hs22067314 [A] KOG3911 Nucleolar protein NOP52/RRP1 101 9e-22
7298046 [A] KOG3911 Nucleolar protein NOP52/RRP1 92 1e-18
SPBC9B6.07 [A] KOG3911 Nucleolar protein NOP52/RRP1 90 3e-18
CE20571 [A] KOG3911 Nucleolar protein NOP52/RRP1 86 7e-17
>YDR087c [A] KOG3911 Nucleolar protein NOP52/RRP1
Length = 278
Score = 258 bits (660), Expect = 5e-69
Identities = 129/252 (51%), Positives = 168/252 (66%), Gaps = 12/252 (4%)
Query: 3 NTLVKQLAGHRKETREQAFESLRKYLTTRNFQNAKQSQFDKLWKGLYYSMWHCDKPIPQQ 62
+ VKQL+ + ++TR A E+L+KYLT + F+ KQ +F+KLWKGLYY+MW D+P PQQ
Sbjct: 4 SNFVKQLSSNNRKTRVNALEALKKYLTAKQFKENKQIEFNKLWKGLYYAMWFSDRPRPQQ 63
Query: 63 SLAYSLGELHLLYLKGK----------NQQAFIRFSKAFWKVICIEWYRIDHHRLDKFLL 112
LA LGELH LY K N +AFI+FS+ FWKV+C EW+ ID +RLDK+LL
Sbjct: 64 RLANELGELHGLYFDPKDNSTADELTTNDKAFIKFSRGFWKVMCFEWFNIDRYRLDKYLL 123
Query: 113 LIRRCLHFQIKYLHECEWEQALVDDYINKVLKKIPLSGDRKVYNGIPFHIIDILLDEWVK 172
LIRR L Q+KYL W++ LVD+YI KVL+ +PLSG KVY GIP HI+DILLDEW +
Sbjct: 124 LIRRVLFSQLKYLQSRNWDKKLVDEYIKKVLRWLPLSGSPKVYTGIPIHIVDILLDEWER 183
Query: 173 VCYGXXXXXXXXXXXXXXXXXXAVS--KTPLSDFISIFQELSSDTNNIKILRDKIKEDLL 230
+ A S KTPL+D I+IFQ++ +D NN K+LR+KIKEDL
Sbjct: 184 LLKDGDEDDEDEENKEEEMRKIAESAKKTPLADVIAIFQDIVADYNNSKVLREKIKEDLF 243
Query: 231 KDQRLRAWDVLQ 242
D RL +WD+L+
Sbjct: 244 SDTRLVSWDILE 255
>Hs4503247 [A] KOG3911 Nucleolar protein NOP52/RRP1
Length = 461
Score = 105 bits (262), Expect = 6e-23
Identities = 61/175 (34%), Positives = 98/175 (55%), Gaps = 7/175 (4%)
Query: 2 ENTLVKQLAGHRKETREQAFESLRKYLTTRNFQNAKQSQFD---KLWKGLYYSMWHCDKP 58
E L ++LAG+ + TR++A LRKY+ R + A D K+WKGL+Y MW DKP
Sbjct: 10 EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69
Query: 59 IPQQSLAYSLGELHLLYLKGKNQQAFIRFSKAFWKVICIEWYRIDHHRLDKFLLLIRRCL 118
+ Q+ L ++ +L + + Q F++ AFW+ + EW ID RLDKF +L+R L
Sbjct: 70 LLQEELGRTISQLVHAFQTTEAQHLFLQ---AFWQTMNREWTGIDRLRLDKFYMLMRMVL 126
Query: 119 HFQIKYLHECEWEQALVDDYINKVLKKIPLSGDRKVYNGIPFHIIDILLDEWVKV 173
+ +K L WE+ +++ + ++ +I L + NG+ H I+I L+E KV
Sbjct: 127 NESLKVLKMQGWEERQIEELLELLMTEI-LHPSSQAPNGVKSHFIEIFLEELTKV 180
>Hs22067314 [A] KOG3911 Nucleolar protein NOP52/RRP1
Length = 758
Score = 101 bits (252), Expect = 9e-22
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 2 ENTLVKQLAGHRKETREQAFESLRKYL---TTRNFQNAKQSQFDKLWKGLYYSMWHCDKP 58
E ++LA K R++A + LR+Y+ T R Q + K+WKGL+Y MW D+P
Sbjct: 9 EIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEP 68
Query: 59 IPQQSLAYSLGELHLLYLKGKNQQAFIRFSKAFWKVICIEWYRIDHHRLDKFLLLIRRCL 118
+ Q+ LA ++ +L Q FI+ FW+ + EW ID RLDK+ +LIR L
Sbjct: 69 LLQEELANTIAQLVHAVNNSAAQHLFIQ---TFWQTMNREWKGIDRLRLDKYYMLIRLVL 125
Query: 119 HFQIKYLHECEWEQALVDDYINKVLKKIPLSGDRKVYNGIPFHIIDILLDEWVKV 173
+ L WE++ + +++ ++K++ L + + NG+ FH IDI LDE KV
Sbjct: 126 RQSFEVLKRNGWEESRIKVFLDVLMKEV-LCPESQSPNGVRFHFIDIYLDELSKV 179
>7298046 [A] KOG3911 Nucleolar protein NOP52/RRP1
Length = 687
Score = 91.7 bits (226), Expect = 1e-18
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
Query: 2 ENTLVKQLAGHRKETREQAFESLRKYLTTRNFQNA--KQSQFDKLWKGLYYSMWHCDKPI 59
E +++ LA + R + LRK+ R + + F ++WKGLYY+MW DKP+
Sbjct: 40 EVKIIRALACNDVVERNRQIRILRKWFKARAGSSFPFNEDDFMRIWKGLYYTMWMSDKPL 99
Query: 60 PQQSLAYSLGELHLLYLKGKNQQAFIRFSKAFWKVICIEWYRIDHHRLDKFLLLIRRCLH 119
Q+ LA L ++ + G N + + AF + +C E++ ID R+DKFL+L RR +
Sbjct: 100 VQEELAEKLAQMVDSF--GGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLMLTRRMVR 157
Query: 120 FQIKYLHECEWEQALVDDYINKVLKKIPLSGDRKVYNGIPFHIIDILLDEWVKVCYG 176
+ +++L + W L+ + + + ++ + ++ G+ H +D+ +E K G
Sbjct: 158 YLLRFLKQNNWNADLIAAFNSSM--QLSVMSEQPKSRGMTMHYLDVFFEELAKAANG 212
>SPBC9B6.07 [A] KOG3911 Nucleolar protein NOP52/RRP1
Length = 217
Score = 90.1 bits (222), Expect = 3e-18
Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 13/173 (7%)
Query: 6 VKQLAGHRKETREQAFESLRKYLTTRNFQNAKQSQFDKLWKGLYYSMWHCDKPIPQQSLA 65
+K+LA + ++TR++A ESL+++L+ + + ++ F KLWKGL+Y MW DKP+ QQ L+
Sbjct: 8 IKKLAANDRKTRDKALESLQRFLSQK--KKFERLDFLKLWKGLFYCMWMADKPLYQQKLS 65
Query: 66 YSLGEL-HLLYLKGKNQQAFIRFSKAFWKVICIEWYRIDHHRLDKFLLLIRRCLHFQIKY 124
+L L ++++ + I F FW+ + EW ID R DKF LL+RR +
Sbjct: 66 DNLAALVPIVWIDNR-----ILFQSTFWETMGREWTGIDILRTDKFYLLMRRFCAAAFRD 120
Query: 125 LHECEWEQALVDDYI---NKVLKKIPLSGDRKVY-NGIPFHIIDILLDEWVKV 173
+ + + AL+D + N++ P + + + NGI FH+ DI +E KV
Sbjct: 121 I-QTRSKTALLDKVVAEYNQMWMDGPFNTENLAFPNGILFHLADIWTEELRKV 172
>CE20571 [A] KOG3911 Nucleolar protein NOP52/RRP1
Length = 397
Score = 85.5 bits (210), Expect = 7e-17
Identities = 57/173 (32%), Positives = 92/173 (52%), Gaps = 11/173 (6%)
Query: 1 MENTLVKQLAGHRKETREQAFESLRKYLTTRNFQNAKQSQFD----KLWKGLYYSMWHCD 56
+E ++LA TR++A L ++ Q+AK+ D +L KGL+Y MW D
Sbjct: 8 VEVVFAQKLACGEPATRQRALRVLHDWIRD---QSAKKHFDDADLMRLCKGLHYVMWMQD 64
Query: 57 KPIPQQSLAYSLGELHLLYLKGKNQQAFIRFSKAFWKVICIEWYRIDHHRLDKFLLLIRR 116
K I Q+ LA +G L ++ +++ +RF F K + EW ID R+DKFL+ +RR
Sbjct: 65 KMILQEELADRIGGLINIFT---SEEEKVRFVACFLKSLSKEWPHIDRWRMDKFLMEVRR 121
Query: 117 CLHFQIKYLHECEWEQALVDDYINKVLKKIPLSGDRKVYNGIPFHIIDILLDE 169
+ +L E +W++ + D+Y KV ++ +S D+ + FH ILLDE
Sbjct: 122 MVRACFTHLAELKWKKDIRDEYW-KVFQETTISTDKSFNEALKFHFASILLDE 173
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.325 0.140 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,354,427
Number of Sequences: 60738
Number of extensions: 568043
Number of successful extensions: 1746
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 6
length of query: 261
length of database: 30,389,216
effective HSP length: 104
effective length of query: 157
effective length of database: 24,072,464
effective search space: 3779376848
effective search space used: 3779376848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)