ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2934 good J KOG2241 Translation, ribosomal structure and biogenesis tRNA-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2934 1030677 1031297 207
(207 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
CE06007_2 [J] KOG2241 tRNA-binding protein 74 1e-13
SPAC30C2.04 [J] KOG2241 tRNA-binding protein 73 2e-13
Hs4758266 [J] KOG2241 tRNA-binding protein 72 4e-13
7303976 [J] KOG2241 tRNA-binding protein 72 4e-13
Hs4507947_2 [J] KOG2241 tRNA-binding protein 72 4e-13
7294108_2 [J] KOG2241 tRNA-binding protein 72 4e-13
YGL105w [J] KOG2241 tRNA-binding protein 72 5e-13
At4g13780_2 [J] KOG2241 tRNA-binding protein 72 5e-13
At3g59980 [J] KOG2241 tRNA-binding protein 65 5e-11
At2g40660 [J] KOG2241 tRNA-binding protein 62 6e-10
ECU04g1510 [J] KOG2241 tRNA-binding protein 49 4e-06
>CE06007_2 [J] KOG2241 tRNA-binding protein
Length = 163
Score = 74.3 bits (181), Expect = 1e-13
Identities = 40/142 (28%), Positives = 77/142 (54%), Gaps = 14/142 (9%)
Query: 31 LNLKVGKFQQVALHPNSEKMYVSQVELGNGSVKQICSGIRQYIPRDQLQDKLCIVVDNIK 90
L+++VG+ + HP+++ +YV Q+++G + + + SG+ +++P DQ+Q++L +V+ N+K
Sbjct: 6 LDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRLVVVLCNLK 65
Query: 91 KCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSAQLVGQQVVIDLDQKITDR 150
K+RG S AM++C D V++ A+S G VV D
Sbjct: 66 PAKMRGVESRAMVMCASSPD------KVEIMEVPADSKP------GTPVVCPPYTHRPDE 113
Query: 151 KIKPKK--WDCISSSLYTNGNG 170
++ PKK W+ ++ L + G
Sbjct: 114 QLNPKKKIWETVAEDLKVSAEG 135
>SPAC30C2.04 [J] KOG2241 tRNA-binding protein
Length = 450
Score = 73.2 bits (178), Expect = 2e-13
Identities = 43/161 (26%), Positives = 84/161 (51%), Gaps = 13/161 (8%)
Query: 30 LLNLKVGKFQQVALHPNSEKMYVSQVELGNGS-VKQICSGIRQYIPRDQLQDKLCIVVDN 88
+++ ++G ++ HPN++ +YVS + G+ + +CSG+ +YIP +Q+Q + IVV N
Sbjct: 281 MIDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVVAN 340
Query: 89 IKKCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSAQLVGQQVVIDLDQKIT 148
+K +R S+AM+ C D + V+ P ++A++ + D +
Sbjct: 341 LKPVNMRSVKSQAMVFCASSPDK----SVVEFVLP-----PENAEIGDRLTFEGFDTEEP 391
Query: 149 DRKIKPKK--WDCISSSLYTNGNGEIVFQQGDSSEKQLFVK 187
+ ++ PK+ W+ I +T+G I + +S +LFVK
Sbjct: 392 EAQLNPKRKIWEAIQPG-FTSGEDLICGYKDESGLHRLFVK 431
>Hs4758266 [J] KOG2241 tRNA-binding protein
Length = 312
Score = 72.4 bits (176), Expect = 4e-13
Identities = 38/148 (25%), Positives = 80/148 (53%), Gaps = 14/148 (9%)
Query: 22 EAKRFPFELLNLKVGKFQQVALHPNSEKMYVSQVELGNGSVKQICSGIRQYIPRDQLQDK 81
++K L+L++G HP+++ +YV +V++G + + + SG+ ++P +Q+Q++
Sbjct: 146 DSKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNR 205
Query: 82 LCIVVDNIKKCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSAQLVGQQVVI 141
+ I++ N+K K+RG S+AM++C S +++ P + + G ++
Sbjct: 206 MVILLCNLKPAKMRGVLSQAMVMC------ASSPEKIEILAP------PNGSVPGDRITF 253
Query: 142 DLDQKITDRKIKPKK--WDCISSSLYTN 167
D D+++ PKK W+ I L+TN
Sbjct: 254 DAFPGEPDKELNPKKKIWEQIQPDLHTN 281
>7303976 [J] KOG2241 tRNA-binding protein
Length = 294
Score = 72.4 bits (176), Expect = 4e-13
Identities = 39/140 (27%), Positives = 80/140 (56%), Gaps = 14/140 (10%)
Query: 31 LNLKVGKFQQVALHPNSEKMYVSQVELGNGSVKQICSGIRQYIPRDQLQDKLCIVVDNIK 90
L+L+VGK +V HP+++ +Y+ +++ G + + + SG+ +++P +++Q++L +V+ N+K
Sbjct: 137 LDLRVGKIVEVGRHPDADSLYLEKIDCGEAAPRTVVSGLVKFVPLEEMQNRLVVVMCNLK 196
Query: 91 KCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSAQLVGQQVVIDLDQKITDR 150
K+RG SEAM++C + V++ P A ++ G V + + D
Sbjct: 197 PAKMRGVTSEAMVMCASTPE------KVEVLSPPAGAVP------GDLVHCEGYPRQPDA 244
Query: 151 KIKPKK--WDCISSSLYTNG 168
++ PKK ++ + L TNG
Sbjct: 245 QLNPKKKIFESCAPDLKTNG 264
>Hs4507947_2 [J] KOG2241 tRNA-binding protein
Length = 172
Score = 72.4 bits (176), Expect = 4e-13
Identities = 39/128 (30%), Positives = 74/128 (57%), Gaps = 12/128 (9%)
Query: 31 LNLKVGKFQQVALHPNSEKMYVSQVELGNGSVKQICSGIRQYIPRDQLQDKLCIVVDNIK 90
L+++VGK V HP+++ +YV ++++G + + SG+ Q++P+++LQD+L +V+ N+K
Sbjct: 12 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 71
Query: 91 KCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSA-QLVGQQVVI-DLDQKIT 148
K+RG S+ M+LC S++ E L+ A G+ V + ++
Sbjct: 72 PQKMRGVESQGMLLC----------ASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQP 121
Query: 149 DRKIKPKK 156
D ++KPKK
Sbjct: 122 DEELKPKK 129
>7294108_2 [J] KOG2241 tRNA-binding protein
Length = 160
Score = 72.4 bits (176), Expect = 4e-13
Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Query: 31 LNLKVGKFQQVALHPNSEKMYVSQVELGNGSVKQICSGIRQYIPRDQLQDKLCIVVDNIK 90
L+++VGK +VA HP+++ +YV +++L + I SG+ +++ ++L +L V+ N+K
Sbjct: 2 LDIRVGKVVEVARHPDADTLYVLKIDLAEAQPRTIISGLVKFVTEEELNQRLVAVLCNLK 61
Query: 91 KCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSA-QLVGQQVVIDLDQKITD 149
K+RG SE M+LC + D + V E + A G ++ + D
Sbjct: 62 PSKMRGILSEGMVLCTSNAD-----------HTVVEPIVLPATATAGSRLSFEGFSGTPD 110
Query: 150 RKIKPKK--WDCISSSLYTNGNGEIVFQ 175
++ PKK W+ +S+ TN +G V++
Sbjct: 111 EQLNPKKKVWEKLSADFKTNSDGLAVWK 138
>YGL105w [J] KOG2241 tRNA-binding protein
Length = 376
Score = 72.0 bits (175), Expect = 5e-13
Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 18/156 (11%)
Query: 31 LNLKVGKFQQVALHPNSEKMYVSQVELGNGS-VKQICSGIRQYIPRDQLQDKLCIVVDNI 89
++ +VG Q+ HP+++ +YVS +++G+ + +CSG+ ++ P D +Q++ +VV N+
Sbjct: 209 IDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKHFPLDAMQERYVVVVCNL 268
Query: 90 KKCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSAQLVGQQVVID-LDQKIT 148
K +RG S AM+LCG + D V+ P +S G +V + +
Sbjct: 269 KPVNMRGIKSTAMVLCGSNDD------KVEFVEPPKDS------KAGDKVFFEGFGDEAP 316
Query: 149 DRKIKPKK--WDCISSSLYTNGNGEIVFQQGDSSEK 182
+++ PKK W+ + TN E++F+ D EK
Sbjct: 317 MKQLNPKKKIWEHLQPHFTTNDGLEVIFK--DEEEK 350
>At4g13780_2 [J] KOG2241 tRNA-binding protein
Length = 166
Score = 72.0 bits (175), Expect = 5e-13
Identities = 39/141 (27%), Positives = 76/141 (53%), Gaps = 12/141 (8%)
Query: 31 LNLKVGKFQQVALHPNSEKMYVSQVELGNGSVKQICSGIRQYIPRDQLQDKLCIVVDNIK 90
L+++VGK + HP ++ +YV ++++G G ++ + SG+ +YIP +++Q+++ V+ N+K
Sbjct: 8 LDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLK 67
Query: 91 KCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSAQLVGQQVVIDLDQKITDR 150
K+R S+AM+L +D + V+L P +G++V + D
Sbjct: 68 PAKMRDIVSQAMVLAASSSDG----SKVELVEP------PKTANIGERVTFPGFEGEPDD 117
Query: 151 KIKPKK--WDCISSSLYTNGN 169
+ PKK W+ + L T N
Sbjct: 118 VLNPKKKVWETLLVDLNTKEN 138
>At3g59980 [J] KOG2241 tRNA-binding protein
Length = 273
Score = 65.5 bits (158), Expect = 5e-11
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 30 LLNLKVGKFQQVALHPNSEKMYVSQVELGNGSVKQICSGIRQYIPRDQLQDKLCIVVDNI 89
LL++KVG+ + H ++ +YV +V++G + ICSG+ +Y+P D LQ +V+ N+
Sbjct: 108 LLDIKVGRIVKAWQHEEADSLYVEEVDIGEAEPRIICSGLVKYVPLDLLQGASVVVLANL 167
Query: 90 KKCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSAQLVGQQVVID-LDQKIT 148
K +RG S M+L +DA +V+L P S+ G + ++ L +
Sbjct: 168 KPRNMRGVKSCGMLLAA--SDAAH--ENVELLVPPEGSVPGDRVWFGNEEDLEQLPEPAP 223
Query: 149 DRKIKPKK-WDCISSSLYTNGNG 170
K++ KK W+ + L T+ +G
Sbjct: 224 PNKVQKKKMWELVQPLLKTDASG 246
>At2g40660 [J] KOG2241 tRNA-binding protein
Length = 440
Score = 62.0 bits (149), Expect = 6e-10
Identities = 37/148 (25%), Positives = 74/148 (50%), Gaps = 12/148 (8%)
Query: 30 LLNLKVGKFQQVALHPNSEKMYVSQVELGNGSVKQICSGIRQYIPRDQLQDKLCIVVDNI 89
LLN++VG ++ HP+++ + V ++++G V+Q+ SG+ ++ + L ++L ++ N+
Sbjct: 282 LLNIQVGLIRKAWKHPSADSLLVEEIDVGEDKVRQVVSGLAKFCSPEDLTNRLVALITNV 341
Query: 90 KKCKLRGEPSEAMILCGEHTDAGSGITSVKLAYPVAESLEQSAQLVGQQVVIDLDQKITD 149
K KLR S+ ++LC D V L + G++V + +
Sbjct: 342 KPGKLRDVMSQGLVLCASSEDHS----------VVEPLLPPAGAKPGERVSFSGIEGKPE 391
Query: 150 RKIKPKK--WDCISSSLYTNGNGEIVFQ 175
+ PKK + I+ LYT+ NG ++
Sbjct: 392 DVLNPKKKQLEKITPGLYTDENGVATYK 419
>ECU04g1510 [J] KOG2241 tRNA-binding protein
Length = 285
Score = 49.3 bits (116), Expect = 4e-06
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 1 MFLQGVVK-RLVRDFHVSRICNEAKRFP-FELLNLKVGKFQQVALHPNSEKMYVSQVELG 58
M QG ++ +L D V +I + P F+LL+++ G+ + +K+Y V
Sbjct: 96 MITQGTLRNKLFIDQMVEKIMPSVRLDPDFQLLDIQAGEIVSIGDVQGLDKLYSEDVVAR 155
Query: 59 NGSVKQICSGIRQYIPRDQLQDKLCIVVDNIKKCKLRGEPSEAMILCGEHTD 110
Q+ SG+R+++ ++++ + V NIK K +G+ SE MILC + D
Sbjct: 156 ERI--QVLSGLREHVAKEEMLGNKFLFVTNIKPAKFKGQVSEGMILCVKGPD 205
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,929,719
Number of Sequences: 60738
Number of extensions: 475958
Number of successful extensions: 1071
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 11
length of query: 207
length of database: 30,389,216
effective HSP length: 101
effective length of query: 106
effective length of database: 24,254,678
effective search space: 2570995868
effective search space used: 2570995868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)