ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII2946 check: MH R KOG0017 General function prediction only FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII2946 1034874 1033948 -309
(309 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL284c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re... 338 6e-93
At5g64670 [J] KOG0846 Mitochondrial/chloroplast ribosomal protei... 143 4e-34
SPBC9B6.06 [J] KOG0846 Mitochondrial/chloroplast ribosomal prote... 131 1e-30
Hs7661806 [J] KOG0846 Mitochondrial/chloroplast ribosomal protei... 89 1e-17
7296309 [J] KOG0846 Mitochondrial/chloroplast ribosomal protein ... 69 7e-12
At3g25920 [J] KOG0846 Mitochondrial/chloroplast ribosomal protei... 67 3e-11
CE26840 [J] KOG0846 Mitochondrial/chloroplast ribosomal protein ... 50 4e-06
>YNL284c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
transcriptase integrase domains in various combinations
Length = 322
Score = 338 bits (867), Expect = 6e-93
Identities = 164/259 (63%), Positives = 201/259 (77%), Gaps = 2/259 (0%)
Query: 50 RQITILGGLKPGEGSKKNYKRLGRGPSSGKGKTAGRGQKGQKARGYVKSWFEGGQTPIFK 109
R ++ILG LKP +GS K++KRLGRGPSSG GKT+GRGQKGQKARG VKSWFEGGQTPI+K
Sbjct: 56 RYVSILGQLKPSDGSTKSFKRLGRGPSSGLGKTSGRGQKGQKARGKVKSWFEGGQTPIYK 115
Query: 110 LFPKLGFTNVTSLKLKELNLDRITWFHQKGRLHLEPGETLTMKKMKEIGLVTGPIKDGIK 169
LFPK+GFTNV + LKELNL RI WFH K RLHL+PGE L M KM+++GLVTGPIK G+K
Sbjct: 116 LFPKIGFTNVGAKPLKELNLKRIQWFHDKNRLHLQPGEVLDMNKMRKLGLVTGPIKYGVK 175
Query: 170 ILGDGKFSYNLPIKIEATRASQDAIEAIEHAGGSFTARYFNRLGLRAHLSPHWFLEKYGR 229
IL GKF YNLPI +EA+RAS AI AIE AGG FTARY+ LGLRAHL+P WFLEK GR
Sbjct: 176 ILASGKFHYNLPIALEASRASAKAIAAIEKAGGKFTARYYTPLGLRAHLNPQWFLEKRGR 235
Query: 230 VPLQARPTKRKDIEYYCNEEKRGYLIMENDPYYQLLQKSKDEGGKNLVARKTKKS--KXX 287
VPLQARPTKR+DI++Y EEKRGYL+ME D Q +++++++G ++ + + KKS +
Sbjct: 236 VPLQARPTKRRDIDFYSKEEKRGYLVMEKDKLLQDIKEAQNKGSRHFLKQNVKKSSLEIE 295
Query: 288 XXXXXXXNDFAPASPNSEI 306
D+ P NS++
Sbjct: 296 LEELSPEKDWVPVVSNSKV 314
>At5g64670 [J] KOG0846 Mitochondrial/chloroplast ribosomal protein L15/L10
Length = 281
Score = 143 bits (360), Expect = 4e-34
Identities = 76/176 (43%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 65 KKNYKRLGRGPSSGKGKTAGRGQKGQKARGYVKSWFEGGQTPIFKLFPKLGFTNVTSLKL 124
+K R GRG SGKGKTAGRG KGQKARG +K FEGGQTP+ + PK GF N L
Sbjct: 75 RKLKTRKGRGIGSGKGKTAGRGHKGQKARGTMKFGFEGGQTPLRRRLPKRGFKNKFKLHF 134
Query: 125 KELNLDRITWFHQKGRLHLEPGETLTMKKMKEIGLVTGPIKDGIKILGDGKFSYNLPIKI 184
+ + L +I G++ + E +TMK +K++G + I+DG++++G G P+
Sbjct: 135 QPVGLGKIAKLINAGKI--DSHELITMKTLKDVGAIGKQIEDGVRLMGRGADDIKWPLHF 192
Query: 185 EATRASQDAIEAIEHAGGSFTARYFNRLGLRAHLSPHWFLEKYGRVPLQARPTKRK 240
E +R + A E +E AGGS Y+N+LGLRA L P WF +K +P ARP ++
Sbjct: 193 EVSRVTVRAKEVVEAAGGSVRRVYYNKLGLRALLKPEWFEKKGRLLPKAARPPPKQ 248
>SPBC9B6.06 [J] KOG0846 Mitochondrial/chloroplast ribosomal protein L15/L10
Length = 220
Score = 131 bits (329), Expect = 1e-30
Identities = 80/188 (42%), Positives = 107/188 (56%), Gaps = 9/188 (4%)
Query: 69 KRLGRGPSSGKGKTAGRGQKG--QKARGYVKSWFEGGQTPIFKLFPKLGFTNVTSLKLKE 126
KR+GRGP+SG GKT+GRG KG Q+ +K FEGGQTPI KLFPK+G + K
Sbjct: 15 KRVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQTPITKLFPKVGHSTGHLKKPLR 74
Query: 127 LNLDRITWFHQKGRLHLEPGETLTMKKMKEIGLVTGPIKDGIKILGDGKFSYNLPIKIEA 186
L L R+ + +GRL + +T+TMK + + G IK G+++ D I IE
Sbjct: 75 LGLGRVQEWIDRGRL--DASKTITMKDLLDSRCCRG-IKHGVELTADEPGLLKTAISIEV 131
Query: 187 TRASQDAIEAIEHAGGSFTARYFNRLGLRAHLSPHWFLEKYGRVPLQARPTKRKDIEYYC 246
++A+ AI+ I++AGGS T YF+ L LRAHL P + P P +KDI YY
Sbjct: 132 SKATVQAIQQIKNAGGSITTVYFSPLALRAHLHP----SSFRTPPRPPLPVSKKDIRYYT 187
Query: 247 NEEKRGYL 254
N GYL
Sbjct: 188 NPHFAGYL 195
>Hs7661806 [J] KOG0846 Mitochondrial/chloroplast ribosomal protein L15/L10
Length = 296
Score = 88.6 bits (218), Expect = 1e-17
Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 12/206 (5%)
Query: 55 LGGLKPGEGSKKNYKRLGRGPSSGKGKTAGRGQKGQKARGY-VKSWFEGGQTPIFKLFPK 113
L LKP GSKK +R RG +G+ GRG KG++ RG + FEGGQTP + PK
Sbjct: 24 LANLKPNPGSKKPERR-PRGRR--RGRKCGRGHKGERQRGTRPRLGFEGGQTPFYIRIPK 80
Query: 114 LGFTNVTSLK--LKELNLDRITWFHQKGRLHLEPGETLTMKKM-KEIGLVTGPIKD--GI 168
GF S + K L+L+R+ + GR ++P + + + ++ G+ P+K G+
Sbjct: 81 YGFNEGHSFRRQYKPLSLNRLQYLIDLGR--VDPSQPIDLTQLVNGRGVTIQPLKRDYGV 138
Query: 169 KILGDGKFSYNLPIKIEATRASQDAIEAIEHAGGSFTARYFNRLGLRAHLSPHWFLEKYG 228
+++ +G ++ + IE AS+ AI AIE GG T +++ L P F +
Sbjct: 139 QLVEEGADTFTAKVNIEVQLASELAIAAIEKNGGVVTTAFYDPRSLDIVCKPVPFFLRGQ 198
Query: 229 RVPLQARPTKRKDIEYYCNEEKRGYL 254
+P + P + + YY + + RGYL
Sbjct: 199 PIPKRMLPPEEL-VPYYTDAKNRGYL 223
>7296309 [J] KOG0846 Mitochondrial/chloroplast ribosomal protein L15/L10
Length = 286
Score = 69.3 bits (168), Expect = 7e-12
Identities = 56/204 (27%), Positives = 96/204 (46%), Gaps = 8/204 (3%)
Query: 55 LGGLKPGEGSKKNYKRLGRGPSSGKGKTAGRGQKGQKARGYVKSWFEGGQTPIFKLFPKL 114
+G L+P SK+N KR GR G AG GQ+ + +++ +E G P + FP
Sbjct: 23 IGNLRPNPNSKQNDKR-GRAQHGGDKHGAGNKGSGQR-QNFMRLGYETGNQPFYLRFPYE 80
Query: 115 GFTNVTSLKLK--ELNLDRITWFHQKGRLHL-EPGETLTMKKMKEIGLVTGPIKDGIKIL 171
+ LK + ++L ++ R+ + +P + T+ + L ++ G ++
Sbjct: 81 PYYKGHHLKRQYPPISLLQLQVLIDTNRIDISQPIDISTLCNSGLLKLKPAEMEYGFQLT 140
Query: 172 GDGKFSYNLPIKIEATRASQDAIEAIEHAGGSFTARYFNRLGLRAHLSPHWFLEKYGRVP 231
DG ++ I IE AS+ I AIE GG Y++ L +P + EK VP
Sbjct: 141 DDGLDNFQAKINIEVQHASEAVIAAIEKNGGVIRTAYYDPRSLHMLANPKKWFEK--GVP 198
Query: 232 LQARPTKRKD-IEYYCNEEKRGYL 254
+ +R +D ++YY + + RGYL
Sbjct: 199 IPSRMLPPQDAVDYYTDPKNRGYL 222
>At3g25920 [J] KOG0846 Mitochondrial/chloroplast ribosomal protein L15/L10
Length = 277
Score = 67.4 bits (163), Expect = 3e-11
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 27/165 (16%)
Query: 55 LGGLKPGEGSKKNYKRLGRGPSSGKGKTAGRGQKGQKARG--YVKSWFEGGQTPIFKLFP 112
L L P GS+K KR GRG S+G+G + G G +GQK+R + FEGGQT +++ P
Sbjct: 83 LDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLP 142
Query: 113 KL---------GFTNVTSLKLKELNLDRITWFHQKGRLHLEPGETLTMKKMKEIGLVTGP 163
KL G + +K++ + G+ ++++ +K+ GL+
Sbjct: 143 KLRGIAGGMRSGLPKYLPVNIKDIE-----------TAGFQEGDEVSLETLKQKGLINPS 191
Query: 164 IKD---GIKILGDGKFSYNLPIKIEATRASQDAIEAIEHAGGSFT 205
++ +KILG G+ S L K A S A E +E +G + T
Sbjct: 192 GRERKLPLKILGTGELSMKLTFKARA--FSTQAKEKLEASGCTLT 234
>CE26840 [J] KOG0846 Mitochondrial/chloroplast ribosomal protein L15/L10
Length = 298
Score = 50.1 bits (118), Expect = 4e-06
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 167 GIKILGDGKFSYNLPIKIEATRASQDAIEAIEHAGGSFTARYFNRLGLRAHLSPHWFLEK 226
G + +G S+ I IE A+ AI A+E AGG Y++ L A ++P + E
Sbjct: 137 GFDLTEEGADSFPYSIDIEVQYATPSAIAAVEKAGGRVRTAYYDVESLEAAINPKCWFEA 196
Query: 227 YGRVPLQARPTKRKDIEYYCNEEKRGYLIMEND 259
VP + +P + +EYY + + RGYL E +
Sbjct: 197 GKVVPKRKQPPQSL-LEYYMDAKNRGYLCEEQE 228
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,287,257
Number of Sequences: 60738
Number of extensions: 863151
Number of successful extensions: 2442
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2428
Number of HSP's gapped (non-prelim): 7
length of query: 309
length of database: 30,389,216
effective HSP length: 106
effective length of query: 203
effective length of database: 23,950,988
effective search space: 4862050564
effective search space used: 4862050564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)