ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3004 good J KOG2278 Translation, ribosomal structure and biogenesis RNA:NAD 2'-phosphotransferase TPT1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3004 1056153 1055446 -236
(236 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL102c [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1 200 1e-51
SPAC2C4.12c_1 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1 100 2e-21
7295099_1 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1 93 3e-19
At2g45330 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1 89 4e-18
At5g23600 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1 87 2e-17
Hs13899325 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1 84 1e-16
>YOL102c [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1
Length = 230
Score = 200 bits (509), Expect = 1e-51
Identities = 115/226 (50%), Positives = 148/226 (64%), Gaps = 6/226 (2%)
Query: 12 RSVKISKALAYLLRHGAVKENLPIDSDGYIALDRILQHNRLKSLKATSTEIQHIVASNDK 71
R V++SKAL+YLLRH AVKE L IDS+GY L +L HNRLK+ K T +I IV NDK
Sbjct: 10 RDVQLSKALSYLLRHTAVKEKLTIDSNGYTPLKELLSHNRLKTHKCTVDDIHRIVKENDK 69
Query: 72 QRFHIKTDPNTGIMYVCATQGHTLKQIAPSQHVLKPITNIEQLSSKLVHGTNVSNCISIL 131
QRFHIKT ++CATQGH++K I PS VL PIT QL +L+HGTN+ + I I+
Sbjct: 70 QRFHIKT-LGADEEWICATQGHSIKSIQPSDEVLVPITEASQLPQELIHGTNLQSVIKII 128
Query: 132 HSGFIKKMSRNHVHLSPGITGKDTDVISGMRSSSNVYIHIKRIQEM-LDSLNLVKSLNNV 190
SG I MSRNHVHLSPG+ VISGMRSSSNVYI I + +L + +SLNNV
Sbjct: 129 ESGAISPMSRNHVHLSPGML-HAKGVISGMRSSSNVYIFIDCHSPLFFQTLKMFRSLNNV 187
Query: 191 YLTSQDIPLKFIDFIQVRKGRSAASSEQLQQLKKLATEMKVPIEII 236
YL+S IP++ I + V+ + E+L L+++ E +P+E I
Sbjct: 188 YLSS-SIPVELIQKVVVK--GNLKDEEKLDTLRRILHERNIPLEKI 230
>SPAC2C4.12c_1 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1
Length = 225
Score = 100 bits (249), Expect = 2e-21
Identities = 71/188 (37%), Positives = 101/188 (52%), Gaps = 16/188 (8%)
Query: 9 PKDRSVKISKALAYLLRHGAVKENLPIDSDGYIALDRILQHNRLKSLKATSTE-IQHIVA 67
P++ V SKAL+ +LRH A L I DGYI +D IL +L + E + IV
Sbjct: 30 PRNDLVHYSKALSKVLRHTAKANGLQIREDGYIEVDSIL---KLPQFRGMGMELLLSIVK 86
Query: 68 SNDKQRFHIKTDPNTGIMYVCATQGHTLKQIAPSQHVLKPITNIEQLSS--KLVHGTNVS 125
NDK+RF + + G++Y+ A QGH++K V P+ I+ SS K+VHGT
Sbjct: 87 GNDKKRFTM--EEVEGVLYIRANQGHSIKA------VQVPMARIDNASSIPKVVHGTKKE 138
Query: 126 NCISILHSGFIKKMSRNHVHLSPGITGKDTDVISGMRSSSNVYIHIKRIQEMLDSLNLVK 185
I G + +M RNH+H + G+ G D VISG+R S +YI+I + M D + +
Sbjct: 139 LWPVISKQG-LSRMKRNHIHCATGLYG-DPGVISGIRKSCTLYIYIDSAKAMQDGVEFYR 196
Query: 186 SLNNVYLT 193
S N V LT
Sbjct: 197 SENGVILT 204
>7295099_1 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1
Length = 245
Score = 93.2 bits (230), Expect = 3e-19
Identities = 56/180 (31%), Positives = 103/180 (57%), Gaps = 6/180 (3%)
Query: 13 SVKISKALAYLLRHGAVKENLPIDSDGYIALDRILQHNRLKSLKATSTEIQHIVASNDKQ 72
+ ++SK L++LLRHGA E + I +DG++++ + +H R L T +++ I A++ KQ
Sbjct: 8 NTQLSKKLSWLLRHGAKTEGITIRADGFVSVPDLQKHPRY--LCFTLEKLKEIAAADAKQ 65
Query: 73 RFHIKTDPNTGIMYVCATQGHTLKQIAPSQHVLKPITNIEQLSSKLVHGTNVSNCISILH 132
R+ ++ +P G+ + A QGH+L + L+ IT++ Q+ VHGT + +I
Sbjct: 66 RYTLRWNPELGVHEIRANQGHSLAVLEGEAGGLENITHVSQV-PLAVHGTYYRHWGAIRS 124
Query: 133 SGFIKKMSRNHVHLSPGITGKDTDVISGMRSSSNVYIHIKRIQEMLDSLNLVKSLNNVYL 192
G + +M+RNHVH + + + +SG RS + I++ + + D + + +S NNV L
Sbjct: 125 QG-LSRMNRNHVHFA--CSDETNSTLSGFRSDCQILIYLNVEKVLADGIPIYRSSNNVLL 181
>At2g45330 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1
Length = 257
Score = 89.4 bits (220), Expect = 4e-18
Identities = 73/202 (36%), Positives = 111/202 (54%), Gaps = 11/202 (5%)
Query: 10 KDRSVKISKALAYLLRHGAVKENLPIDSDGYIALDRILQHNRLKS----LKA-TSTEIQH 64
KDR + + L +LRH A + L + DG++ ++ +L N S LK+ T EI+
Sbjct: 49 KDRIDALGRLLTRILRHMATELRLNMRGDGFVKVEDLLNLNLKTSANIQLKSHTIDEIRE 108
Query: 65 IVASNDKQRFHIKTDPNTGIMYVCATQGHTLKQIAPSQHVLKPITNIEQLSSKLVHGTNV 124
V ++KQRF + D N G + + A QGH++ + S+ +LKPI + E+ + VHGT
Sbjct: 109 AVRRDNKQRFSL-IDEN-GELLIRANQGHSITTV-ESEKLLKPILSPEE-APVCVHGTYR 164
Query: 125 SNCISILHSGFIKKMSRNHVHLSPGITGKDTDVISGMRSSSNVYIHIKRIQEMLDSLNLV 184
N SIL SG +K+M+R HVH S G+ D +VISGMR + NV I + + + D +
Sbjct: 165 KNLESILASG-LKRMNRMHVHFSCGLP-TDGEVISGMRRNVNVIIFLDIKKALEDGIAFY 222
Query: 185 KSLNNVYLTSQDIPLKFIDFIQ 206
S N V LT + +D+ Q
Sbjct: 223 ISDNKVILTEGIDGVLPVDYFQ 244
>At5g23600 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1
Length = 212
Score = 87.0 bits (214), Expect = 2e-17
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 15/203 (7%)
Query: 11 DRSVKISKALAYLLRHGAVKENLPIDSDGYIALDRILQHN-----RLKSLKATSTEIQHI 65
DR + + L +LRH A + L + DG++ ++ +L N ++ T EI+
Sbjct: 5 DRIDALGRILTRILRHMATELRLNMRGDGFVKVEDLLNLNLKTCANIQLNSHTIDEIREA 64
Query: 66 VASNDKQRFHIKTDPNTGIMYVCATQGHTLKQIAPSQHVLKPITNIEQLSSKLVHGTNVS 125
V ++K+RF + + G + + A QGH++ + S+ +LKPI + E+ + VHGT
Sbjct: 65 VTRDNKKRFSLIDED--GELLIRANQGHSITTVE-SEKLLKPILSPEE-APVCVHGTYRK 120
Query: 126 NCISILHSGFIKKMSRNHVHLSPGITGKDTDVISGMRSSSNV--YIHIKRIQEMLDSLNL 183
N SIL SG +K+M+R HVH S G+ D +VISG+R + NV ++HIK+ E D +
Sbjct: 121 NLESILASG-LKRMNRMHVHFSCGLP-TDGEVISGVRRNVNVIIFLHIKKALE--DGIAF 176
Query: 184 VKSLNNVYLTSQDIPLKFIDFIQ 206
S N V LT + + +D+ Q
Sbjct: 177 YISDNKVILTQGIVGVLPVDYFQ 199
>Hs13899325 [J] KOG2278 RNA:NAD 2'-phosphotransferase TPT1
Length = 204
Score = 84.3 bits (207), Expect = 1e-16
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 14/185 (7%)
Query: 37 SDGYIALDRILQHNRLKSLKATSTEIQHIVASNDKQRFHIKT-DPNTGIMYVCATQGHTL 95
+DG++ L +LQ + + A ++Q +V +N KQRF ++ DP+TG++ + A QGH+L
Sbjct: 3 ADGFVPLGTLLQLPQFRGFSAE--DVQRVVDTNRKQRFALQLGDPSTGLL-IRANQGHSL 59
Query: 96 KQIAPSQHVLKPITNIEQLSSKLVHGTNVSNCISILHSGFIKKMSRNHVHLSPGITGKDT 155
Q+ + L P+ + L LVHGT + SIL G + R H+HL+PG+ G D
Sbjct: 60 -QVPKLE--LMPLETPQALPPMLVHGTFWKHWPSILLKG-LSCQGRTHIHLAPGLPG-DP 114
Query: 156 DVISGMRSSSNVYIHIKRIQEMLDSLNLVKSLNNVYLTSQD-----IPLKFIDFIQVRKG 210
+ISGMRS + + I + D + +S N V LT + +P F + +Q+R
Sbjct: 115 GIISGMRSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPT 174
Query: 211 RSAAS 215
R S
Sbjct: 175 RKPLS 179
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,692,728
Number of Sequences: 60738
Number of extensions: 490811
Number of successful extensions: 1547
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 30,389,216
effective HSP length: 103
effective length of query: 133
effective length of database: 24,133,202
effective search space: 3209715866
effective search space used: 3209715866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)