ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3077 good K KOG3463 Transcription Transcription initiation factor IIA, gamma subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3077 1086759 1086421 -113
(113 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL058w [K] KOG3463 Transcription initiation factor IIA gamma su... 154 3e-38
SPCC553.11c [K] KOG3463 Transcription initiation factor IIA gamm... 107 3e-24
At4g24440 [K] KOG3463 Transcription initiation factor IIA gamma ... 96 1e-20
Hs4758486 [K] KOG3463 Transcription initiation factor IIA gamma ... 92 1e-19
7301064 [K] KOG3463 Transcription initiation factor IIA gamma su... 88 2e-18
7290110 [K] KOG3463 Transcription initiation factor IIA gamma su... 77 4e-15
CE26630 [K] KOG3463 Transcription initiation factor IIA gamma su... 77 5e-15
CE26429 [K] KOG3463 Transcription initiation factor IIA gamma su... 69 8e-13
ECU02g0450 [K] KOG3463 Transcription initiation factor IIA gamma... 54 5e-08
>YKL058w [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 122
Score = 154 bits (388), Expect = 3e-38
Identities = 76/121 (62%), Positives = 94/121 (76%), Gaps = 10/121 (8%)
Query: 1 MSTTGYYELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKL 60
M+ GYYELYRRST+G SL+D+LDTLISDGRIEASLAM +LETFD+V+++TL+D T SKL
Sbjct: 1 MAVPGYYELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKL 60
Query: 61 TFKGHLDTYRFCDDVWTFIVKDCIVKLDGQ----------DQESELKCDKLHIVACNAKK 110
T KG+LDTY FCDDVWTFIVK+C V ++ D +S + DKL IVACN+KK
Sbjct: 61 TVKGNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIVACNSKK 120
Query: 111 N 111
+
Sbjct: 121 S 121
>SPCC553.11c [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 107
Score = 107 bits (267), Expect = 3e-24
Identities = 54/107 (50%), Positives = 74/107 (68%), Gaps = 6/107 (5%)
Query: 6 YYELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKLTFKGH 65
YYELYRRS + SL D+LD LIS G+I LAM +L FD+ +++ L +K S+LTFKGH
Sbjct: 4 YYELYRRSRI--SLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGH 61
Query: 66 LDTYRFCDDVWTFIVKDCIVKLDGQDQESELKCDKLHIVACNAKKNT 112
LDTYRFCD+VWTFI+K+ + D + S +K+ IVAC + ++
Sbjct: 62 LDTYRFCDEVWTFIIKNPSFRFDNETVTS----NKIRIVACATRDSS 104
>At4g24440 [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 106
Score = 95.5 bits (236), Expect = 1e-20
Identities = 43/107 (40%), Positives = 71/107 (66%), Gaps = 4/107 (3%)
Query: 7 YELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKLTFKGHL 66
+ELYRRST+G L ++LD ++ G + LA+ +L FD+ +++ L + +K++ KGHL
Sbjct: 4 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHL 63
Query: 67 DTYRFCDDVWTFIVKDCIVKLDGQDQESELKCDKLHIVACNAKKNTE 113
TYRFCD+VWTFI++D + K D + + ++ IVAC++K T+
Sbjct: 64 HTYRFCDNVWTFILQDAMFKSDDRQE----NVSRVKIVACDSKLLTQ 106
>Hs4758486 [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 109
Score = 92.0 bits (227), Expect = 1e-19
Identities = 44/103 (42%), Positives = 68/103 (65%), Gaps = 4/103 (3%)
Query: 7 YELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKLTFKGHL 66
Y+LYR +TLG SL +SLD LI +I LA+ +L FD+ I+ L + +++ F+G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSL 62
Query: 67 DTYRFCDDVWTFIVKDCIVKLDGQDQESELKCDKLHIVACNAK 109
+TYRFCD+VWTF++ D ++ ++ +K DK+ IVAC+ K
Sbjct: 63 NTYRFCDNVWTFVLND----VEFREVTELIKVDKVKIVACDGK 101
>7301064 [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 106
Score = 88.2 bits (217), Expect = 2e-18
Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 5/104 (4%)
Query: 7 YELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKLTFK-GH 65
Y+LYR +TLG +L +SLD LI G+I LA +L FD+ I++ L + +++TFK G
Sbjct: 3 YQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGK 62
Query: 66 LDTYRFCDDVWTFIVKDCIVKLDGQDQESELKCDKLHIVACNAK 109
L+TYRFCD+VWT ++ D ++ ++ +K DK+ IVAC+ K
Sbjct: 63 LNTYRFCDNVWTLMLND----VEFREVHEIVKVDKVKIVACDGK 102
>7290110 [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 107
Score = 77.0 bits (188), Expect = 4e-15
Identities = 44/106 (41%), Positives = 64/106 (59%), Gaps = 5/106 (4%)
Query: 7 YELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKLTFKG-H 65
Y+ YR +TLG +L D+LD ++ G I +A +L +D+ IS L+D TS ++F
Sbjct: 3 YQHYRATTLGRTLQDTLDEMMERGDITKKIANLVLLRYDKSISTALKDHGTSNMSFTAER 62
Query: 66 LDTYRFCDDVWTFIVKDCIVKLDGQDQESELKCDKLHIVACNAKKN 111
L+T+R CD+VWT I+KD + +DQ S LK D + IVAC N
Sbjct: 63 LETFRCCDNVWTLILKDAEFR---EDQHS-LKVDVVKIVACLGTDN 104
>CE26630 [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 113
Score = 76.6 bits (187), Expect = 5e-15
Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 7 YELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKLTFKG-H 65
Y+LYR +TLG +L +LD + D I SL+ I+++FD+ I+ L K +K+ F+
Sbjct: 6 YQLYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHKAKNKVNFRADK 65
Query: 66 LDTYRFCDDVWTFIVKDCIVKLDGQDQESELKCDKLHIVACNAK 109
L YR+CD+VWTFIV+ ++D +D D+L IVAC+ +
Sbjct: 66 LRAYRYCDNVWTFIVE----QIDLRDAVEGGTVDRLKIVACDGQ 105
>CE26429 [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 139
Score = 69.3 bits (168), Expect = 8e-13
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 7 YELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKLTF-KGH 65
Y LYR +TLG +L +L+ + S+G + SLA +L+ FD+ ++ + K+ F
Sbjct: 4 YALYRGTTLGQALDKTLEDMESEGLLTKSLASKVLQQFDKSMNKQISRLPKEKMNFCATQ 63
Query: 66 LDTYRFCDDVWTFIVKDCIVKLDGQDQESELKCDKLHIVACNAKKNT 112
L TYR+CD+VWTFI+ + V L + + DKL +VAC+ ++ +
Sbjct: 64 LLTYRYCDNVWTFILNN--VTLKDPQRSFDEPIDKLKVVACDGRQTS 108
>ECU02g0450 [K] KOG3463 Transcription initiation factor IIA gamma subunit
Length = 113
Score = 53.5 bits (127), Expect = 5e-08
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 7 YELYRRSTLGASLMDSLDTLISDGRIEASLAMTILETFDRVISDTLRDKTTSKLTFKGHL 66
YE YR+ +G L +D ++ + + ILETFD + T+ ++FKG +
Sbjct: 2 YEFYRQLMVGKVLEKIVDEKVNANVLSPNQGKHILETFDLSVPIVFNKSVTNSMSFKGKV 61
Query: 67 DTYRFCDDVWTFIVKDCIVKLDGQDQESELKCDKLHIVACNAKKNTE 113
D Y D VW F ++ L+ + +++IVAC+A N +
Sbjct: 62 DFYNHVDGVWRFQTTGFVMSLNNE----YFNAGEVNIVACDADINMD 104
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,223,349
Number of Sequences: 60738
Number of extensions: 218602
Number of successful extensions: 529
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 9
length of query: 113
length of database: 30,389,216
effective HSP length: 89
effective length of query: 24
effective length of database: 24,983,534
effective search space: 599604816
effective search space used: 599604816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)