ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3106 check: MH A KOG4205 RNA processing and modification RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3106 1094574 1096283 570
(570 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 327 3e-89
SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 218 1e-56
At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 177 5e-44
CE29337 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 176 7e-44
Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 175 2e-43
Hs20373175 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 174 3e-43
At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 169 1e-41
At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 167 4e-41
At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 166 7e-41
At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 160 4e-39
At1g17640 [R] KOG0118 FOG: RRM domain 160 5e-39
At5g40490 [R] KOG0118 FOG: RRM domain 157 3e-38
7301687 [R] KOG0118 FOG: RRM domain 154 3e-37
7301686 [R] KOG0118 FOG: RRM domain 154 3e-37
7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 150 7e-36
Hs4504447 [R] KOG0118 FOG: RRM domain 149 1e-35
Hs14043072 [R] KOG0118 FOG: RRM domain 149 1e-35
Hs13654587 [R] KOG0118 FOG: RRM domain 148 2e-35
Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 147 6e-35
Hs4885423 [R] KOG0118 FOG: RRM domain 147 6e-35
Hs14110417 [R] KOG0118 FOG: RRM domain 146 9e-35
Hs4758542 [R] KOG0118 FOG: RRM domain 145 2e-34
Hs14110404 [R] KOG0118 FOG: RRM domain 145 2e-34
7301350 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 145 2e-34
7299788 [R] KOG0118 FOG: RRM domain 144 4e-34
Hs14110420 [R] KOG0118 FOG: RRM domain 144 5e-34
Hs14110414 [R] KOG0118 FOG: RRM domain 144 5e-34
Hs22042102 [R] KOG0118 FOG: RRM domain 143 6e-34
Hs4504445 [R] KOG0118 FOG: RRM domain 142 1e-33
Hs14043070 [R] KOG0118 FOG: RRM domain 142 1e-33
Hs13650572 [R] KOG0118 FOG: RRM domain 141 2e-33
Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 140 7e-33
At4g14300 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage ... 139 9e-33
CE17059 [R] KOG0118 FOG: RRM domain 137 3e-32
At1g58470 [R] KOG0118 FOG: RRM domain 137 4e-32
Hs5031693 [R] KOG0118 FOG: RRM domain 137 6e-32
Hs22049560 [R] KOG0118 FOG: RRM domain 135 1e-31
Hs5803036 [R] KOG0118 FOG: RRM domain 132 2e-30
7301511 [R] KOG0118 FOG: RRM domain 131 2e-30
Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 131 3e-30
Hs17458873 [R] KOG0118 FOG: RRM domain 124 3e-28
CE29317 [R] KOG0118 FOG: RRM domain 122 2e-27
7299785 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 120 7e-27
Hs17440809 [R] KOG0118 FOG: RRM domain 115 2e-25
7299787 [R] KOG0118 FOG: RRM domain 114 3e-25
Hs14734196 [R] KOG0118 FOG: RRM domain 111 3e-24
CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage an... 96 2e-19
Hs17433768 [R] KOG0118 FOG: RRM domain 95 2e-19
Hs20474934 [R] KOG0118 FOG: RRM domain 94 4e-19
Hs22060967 [R] KOG0118 FOG: RRM domain 93 9e-19
CE11598 [R] KOG0118 FOG: RRM domain 92 2e-18
Hs20537262 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 91 4e-18
At2g37220 [R] KOG0118 FOG: RRM domain 91 4e-18
Hs22055112 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 91 5e-18
At4g24770 [R] KOG0118 FOG: RRM domain 89 2e-17
At2g41060 [R] KOG0118 FOG: RRM domain 89 2e-17
Hs22044597 [R] KOG0118 FOG: RRM domain 87 7e-17
Hs18550462 [R] KOG0118 FOG: RRM domain 86 1e-16
Hs20480107 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 85 3e-16
At5g50250 [R] KOG0118 FOG: RRM domain 85 3e-16
At2g18510 [A] KOG0131 Splicing factor 3b subunit 4 85 3e-16
Hs22041301 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 83 1e-15
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 82 2e-15
At3g56860 [R] KOG0118 FOG: RRM domain 81 4e-15
At3g15010 [R] KOG0118 FOG: RRM domain 81 5e-15
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 80 6e-15
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 80 8e-15
Hs17435738 [R] KOG0118 FOG: RRM domain 80 8e-15
Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 80 1e-14
At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 79 1e-14
At3g26420 [R] KOG0118 FOG: RRM domain 77 5e-14
Hs17462157 [R] KOG0118 FOG: RRM domain 77 7e-14
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 77 7e-14
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 77 9e-14
Hs22044914 [R] KOG0118 FOG: RRM domain 76 2e-13
At5g04280 [R] KOG0118 FOG: RRM domain 76 2e-13
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 76 2e-13
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 75 2e-13
Hs4502847 [R] KOG0118 FOG: RRM domain 75 2e-13
At3g52380 [R] KOG0118 FOG: RRM domain 75 3e-13
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 75 3e-13
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 75 3e-13
Hs20537556_2 [R] KOG0118 FOG: RRM domain 75 3e-13
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 75 3e-13
Hs22044532 [R] KOG0118 FOG: RRM domain 74 5e-13
Hs22046858 [R] KOG0118 FOG: RRM domain 74 8e-13
Hs22047249 [R] KOG0118 FOG: RRM domain 73 1e-12
Hs18553597 [R] KOG0118 FOG: RRM domain 73 1e-12
Hs17446941 [R] KOG0118 FOG: RRM domain 73 1e-12
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 72 2e-12
Hs20548749 [R] KOG0118 FOG: RRM domain 72 2e-12
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 71 4e-12
7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 71 4e-12
Hs5803137 [R] KOG0118 FOG: RRM domain 71 5e-12
At3g19130 [R] KOG0118 FOG: RRM domain 71 5e-12
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 70 7e-12
At3g08000 [R] KOG0118 FOG: RRM domain 70 9e-12
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 69 1e-11
Hs20536974 [R] KOG0118 FOG: RRM domain 69 2e-11
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 69 2e-11
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 69 2e-11
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 69 2e-11
ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 69 2e-11
CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superf... 68 4e-11
At4g13850 [R] KOG0118 FOG: RRM domain 68 4e-11
At1g60000 [R] KOG0118 FOG: RRM domain 68 4e-11
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 67 6e-11
YGR159c [K] KOG4210 Nuclear localization sequence binding protein 67 7e-11
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 67 9e-11
CE02231 [R] KOG0118 FOG: RRM domain 67 9e-11
At5g61030 [R] KOG0118 FOG: RRM domain 67 9e-11
At1g74230 [R] KOG0118 FOG: RRM domain 67 9e-11
7291799 [R] KOG0118 FOG: RRM domain 67 9e-11
YNL016w [R] KOG0118 FOG: RRM domain 66 1e-10
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 66 1e-10
At5g54900 [R] KOG0118 FOG: RRM domain 66 1e-10
At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 66 1e-10
At1g54080 [R] KOG0118 FOG: RRM domain 66 2e-10
At1g22330 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 66 2e-10
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 65 2e-10
7290689 [A] KOG0131 Splicing factor 3b subunit 4 65 2e-10
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 65 3e-10
At4g39260 [R] KOG0118 FOG: RRM domain 65 3e-10
At3g06970 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 65 3e-10
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 65 3e-10
7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 65 3e-10
At3g23830 [R] KOG0118 FOG: RRM domain 65 4e-10
At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 65 4e-10
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 64 5e-10
At3g52150 [R] KOG0118 FOG: RRM domain 64 5e-10
Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily) 64 6e-10
Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily) 64 6e-10
Hs20485464 [R] KOG0118 FOG: RRM domain 64 6e-10
At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 64 6e-10
Hs14719414 [R] KOG0118 FOG: RRM domain 64 8e-10
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 64 8e-10
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 64 8e-10
At5g53720 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 64 8e-10
Hs4506445 [AR] KOG0109 RNA-binding protein LARK contains RRM and... 63 1e-09
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 63 1e-09
At5g19350 [R] KOG0118 FOG: RRM domain 63 1e-09
At2g21660 [R] KOG0118 FOG: RRM domain 63 1e-09
At1g78260 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 63 1e-09
7290149 [R] KOG0118 FOG: RRM domain 63 1e-09
YNL004w [R] KOG0118 FOG: RRM domain 63 1e-09
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 63 1e-09
At1g20880 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 63 1e-09
Hs22056947 [R] KOG0118 FOG: RRM domain 62 2e-09
Hs18543876 [R] KOG0118 FOG: RRM domain 62 2e-09
At1g76460 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 62 2e-09
At1g22910 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 62 2e-09
CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 62 2e-09
At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 62 2e-09
At5g06210 [R] KOG0118 FOG: RRM domain 62 2e-09
At3g54770 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 62 2e-09
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 62 3e-09
Hs13899354 [AR] KOG0109 RNA-binding protein LARK contains RRM an... 62 3e-09
Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 62 3e-09
At1g33470 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM su... 62 3e-09
At1g18630 [R] KOG0118 FOG: RRM domain 62 3e-09
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 62 3e-09
7300034 [R] KOG0118 FOG: RRM domain 61 4e-09
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 61 5e-09
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 61 5e-09
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 61 5e-09
Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 61 5e-09
At1g49600 [R] KOG0118 FOG: RRM domain 61 5e-09
At1g01080 [R] KOG0118 FOG: RRM domain 61 5e-09
Hs5729794 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 60 7e-09
Hs17452185 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 60 7e-09
At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 60 7e-09
7290796 [R] KOG0118 FOG: RRM domain 60 7e-09
YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily 60 9e-09
Hs4506449 [R] KOG4733 FOG: RRM domain 60 9e-09
CE18909 [R] KOG4733 FOG: RRM domain 60 9e-09
CE18908 [R] KOG4733 FOG: RRM domain 60 9e-09
Hs5729816 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 60 1e-08
Hs14192947 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM s... 60 1e-08
At4g36960 [R] KOG0118 FOG: RRM domain 60 1e-08
YCL011c [R] KOG0118 FOG: RRM domain 59 2e-08
Hs8922789 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 59 2e-08
Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 59 2e-08
ECU08g0380 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 59 2e-08
At3g14100 [R] KOG0118 FOG: RRM domain 59 2e-08
Hs4503259 [R] KOG0118 FOG: RRM domain 59 2e-08
Hs14731277 [R] KOG0118 FOG: RRM domain 59 2e-08
Hs8400724 [R] KOG4733 FOG: RRM domain 59 3e-08
Hs8400722 [R] KOG4733 FOG: RRM domain 59 3e-08
Hs8400720 [R] KOG4733 FOG: RRM domain 59 3e-08
Hs8400718 [R] KOG4733 FOG: RRM domain 59 3e-08
Hs4759098 [R] KOG0118 FOG: RRM domain 59 3e-08
Hs4506447 [R] KOG4733 FOG: RRM domain 59 3e-08
7299058 [R] KOG0118 FOG: RRM domain 59 3e-08
Hs22043440 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage... 58 3e-08
Hs14141154 [A] KOG4212 RNA-binding protein hnRNP-M 58 3e-08
At5g19960 [R] KOG0118 FOG: RRM domain 58 3e-08
At2g16260 [R] KOG0118 FOG: RRM domain 58 3e-08
7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 58 3e-08
Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 58 4e-08
Hs13123780 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 58 4e-08
CE27175 [R] KOG0118 FOG: RRM domain 58 4e-08
CE13934 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM supe... 58 4e-08
At3g18610 [K] KOG4210 Nuclear localization sequence binding protein 58 4e-08
At2g14550 [A] KOG0131 Splicing factor 3b subunit 4 58 4e-08
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 57 6e-08
At5g54580 [R] KOG0118 FOG: RRM domain 57 6e-08
At4g27000 [R] KOG0118 FOG: RRM domain 57 6e-08
At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 57 6e-08
At2g22090 [R] KOG0118 FOG: RRM domain 57 6e-08
At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein 57 6e-08
At1g17370 [R] KOG0118 FOG: RRM domain 57 6e-08
At1g11650 [R] KOG0118 FOG: RRM domain 57 6e-08
Hs13123778 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 57 8e-08
Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 57 8e-08
At1g47490 [R] KOG0118 FOG: RRM domain 57 8e-08
Hs7657506 [R] KOG4733 FOG: RRM domain 57 1e-07
At2g21690 [R] KOG0118 FOG: RRM domain 57 1e-07
Hs9558733 [R] KOG0118 FOG: RRM domain 56 1e-07
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 56 1e-07
Hs16519537 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily) 56 1e-07
Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 56 1e-07
At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protei... 56 1e-07
At1g73530 [R] KOG0118 FOG: RRM domain 56 1e-07
Hs18573289 [R] KOG0118 FOG: RRM domain 56 2e-07
At2g37510 [R] KOG0118 FOG: RRM domain 56 2e-07
At2g22100 [R] KOG0118 FOG: RRM domain 56 2e-07
7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 56 2e-07
YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 55 2e-07
At2g16940 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 55 2e-07
At1g47500 [R] KOG0118 FOG: RRM domain 55 2e-07
7297205 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM supe... 55 2e-07
Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 55 3e-07
Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 55 3e-07
At3g53460 [R] KOG0118 FOG: RRM domain 55 3e-07
CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 55 4e-07
At2g47310 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 55 4e-07
At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 54 5e-07
Hs20149667 [R] KOG0112 Large RNA-binding protein (RRM superfamily) 54 6e-07
Hs17437324 [R] KOG0118 FOG: RRM domain 54 6e-07
At1g34140 [R] KOG0118 FOG: RRM domain 54 6e-07
At1g07350 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold at... 54 8e-07
CE08881 [R] KOG0118 FOG: RRM domain 53 1e-06
At5g41690 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 53 1e-06
SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM ... 53 1e-06
Hs7657383 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 53 1e-06
Hs22058338 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 53 1e-06
CE29126 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 53 1e-06
7298629 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 53 1e-06
Hs17435511 [R] KOG0118 FOG: RRM domain 52 2e-06
At5g04810 [R] KOG4197 FOG: PPR repeat 52 2e-06
At3g52660 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 52 2e-06
At1g03457 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM supe... 52 2e-06
7295256 [AR] KOG0109 RNA-binding protein LARK contains RRM and r... 52 2e-06
Hs22059781 [R] KOG0118 FOG: RRM domain 52 2e-06
CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 52 2e-06
CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 52 2e-06
7294989 [R] KOG0118 FOG: RRM domain 52 2e-06
HsM5453806 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 52 3e-06
Hs8922388 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM s... 52 3e-06
Hs4826998 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily) 52 3e-06
Hs4758122 [R] KOG0118 FOG: RRM domain 52 3e-06
Hs22040836 [R] KOG0118 FOG: RRM domain 52 3e-06
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 52 3e-06
Hs11036660 [R] KOG0118 FOG: RRM domain 52 3e-06
Hs11036658 [R] KOG0118 FOG: RRM domain 52 3e-06
Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superf... 51 4e-06
At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 51 4e-06
YPR112c [R] KOG0110 RNA-binding protein (RRM superfamily) 51 5e-06
CE25017 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 51 5e-06
At3g55340 [R] KOG0118 FOG: RRM domain 51 5e-06
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 50 7e-06
Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 50 7e-06
Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM s... 50 7e-06
Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 50 9e-06
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 50 9e-06
At5g64200 [A] KOG4207 Predicted splicing factor SR protein super... 50 9e-06
At2g35410 [R] KOG0118 FOG: RRM domain 50 9e-06
>YOL123w [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 534
Score = 327 bits (838), Expect = 3e-89
Identities = 168/251 (66%), Positives = 189/251 (74%), Gaps = 12/251 (4%)
Query: 178 KADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENA 237
KADLS++ KMFIGGLNW+TTE+ LR+YF KYG V ++KIMKD ATGRSRGFGFL+FE
Sbjct: 151 KADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP 210
Query: 238 SSVDEVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSII 297
SSVDEVVKTQHILDGKVIDPKRAIPR+EQDKTGKIFVGGIGPDVRPKEFEEFFSQWG+II
Sbjct: 211 SSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII 270
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPRXXXXXXXXX 357
DAQLMLDKDTG+SRGFGF+TYD+ DAVDRVCQNKFI+FK ++IEIKRAEPR
Sbjct: 271 DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPRHMQQKSSNN 330
Query: 358 XXXXXXXNMS-------NPMQQYQMFQNPMMAGGFNPMMATGFNPQSMNXXXXXXXXXXX 410
NM+ N QM+QNPMM GG+NPMM NPQ+M
Sbjct: 331 GGNNGGNNMNRRGGNFGNQGDFNQMYQNPMM-GGYNPMM----NPQAMTDYYQKMQEYYQ 385
Query: 411 XXXXXXGIDYT 421
G+DYT
Sbjct: 386 QMQKQTGMDYT 396
Score = 69.7 bits (169), Expect = 1e-11
Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 175 KAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF 234
+AI D K+F+GG+ + + ++FS++G + + ++M D TG+SRGFGF+T+
Sbjct: 232 RAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291
Query: 235 ENASSVDEVVKTQHI-LDGKVIDPKRAIPREEQDKT 269
++A +VD V + + I + I+ KRA PR Q K+
Sbjct: 292 DSADAVDRVCQNKFIDFKDRKIEIKRAEPRHMQQKS 327
>SPBC660.15 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 474
Score = 218 bits (556), Expect = 1e-56
Identities = 107/215 (49%), Positives = 140/215 (64%), Gaps = 5/215 (2%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
+R+ KMFIGGLNWETT++ LRDYF ++G V + +M+D+ TGRSRGFGFLTF+N V+
Sbjct: 159 NREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVN 218
Query: 242 EVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
EV+ +H LDGK+IDPKRAIPREEQ+KT K+FVGG+ D +EF FF+Q+G ++DA L
Sbjct: 219 EVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATL 278
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPRXXXXXXXXXXXXX 361
M+DKDTGR RGFGF+TY+ AV+ +I GK +E+KRA P+
Sbjct: 279 MMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHG 338
Query: 362 XXXNMSNPMQQYQMFQNPMMAGGFNPMMATGFNPQ 396
N +NP QN M GG P M + Q
Sbjct: 339 YHGN-ANPYYA----QNMNMYGGMTPAMMAQYYRQ 368
Score = 75.9 bits (185), Expect = 2e-13
Identities = 40/110 (36%), Positives = 64/110 (57%), Gaps = 5/110 (4%)
Query: 175 KAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF 234
+AI + KMF+GG+ + TEE R++F+++G V + +M D TGR RGFGF+T+
Sbjct: 236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 235 ENASSVDEVVKTQHI-LDGKVIDPKRAIP----REEQDKTGKIFVGGIGP 279
EN S+V+ + +I + GK ++ KRA P R+ D+ + G P
Sbjct: 296 ENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANP 345
>At5g55550 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 473
Score = 177 bits (448), Expect = 5e-44
Identities = 92/228 (40%), Positives = 128/228 (55%), Gaps = 23/228 (10%)
Query: 181 LSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV 240
+ D+ K+FIGG++W+T EE LRDYFS YG V E IM+D ATGR+RGFGF+ F +
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 241 DEVVKTQHILDGKVIDPKRAIPREEQD--------------------KTGKIFVGGIGPD 280
+ V+ +HI+DG+ ++ K+A+PR++Q +T KIFVGG+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 281 VRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQI 340
+ +EF+ +F Q+G+I D +M D +T R RGFGFIT+D+ DAVDRV F E GK +
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 341 EIKRAEPRXXXXXXXXXXXXXXXXNM---SNPMQQYQMFQNPMMAGGF 385
E+KRA P+ N SN M F N GF
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGF 228
>CE29337 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 176 bits (447), Expect = 7e-44
Identities = 88/188 (46%), Positives = 123/188 (64%), Gaps = 11/188 (5%)
Query: 172 HEPKAIKADL------SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGR 225
HE + AD S+D KMFIGGL+W+TT E LRDYF ++G V E +M+D AT R
Sbjct: 25 HEEARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKR 84
Query: 226 SRGFGFLTFENASSVDEVVKT-QHILDGKVIDPKRAIPREEQ----DKTGKIFVGGIGPD 280
+RGFGF+TF + SSVD+V+ +H LDGK IDPK A P+ Q KT K+F+GG+
Sbjct: 85 ARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSAT 144
Query: 281 VRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQI 340
++ +++F +G + DA LM DK T R RGFGF+T+D+ + D+VC+ F E GK +
Sbjct: 145 STLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMV 204
Query: 341 EIKRAEPR 348
E K+A+P+
Sbjct: 205 ECKKAQPK 212
Score = 75.1 bits (183), Expect = 3e-13
Identities = 38/92 (41%), Positives = 58/92 (62%), Gaps = 1/92 (1%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
PK +A L K+FIGGL+ +T E ++ YF YG V + +M D AT R RGFGF+T
Sbjct: 122 PKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVT 181
Query: 234 FENASSVDEVVKTQ-HILDGKVIDPKRAIPRE 264
F++ D+V + H ++GK+++ K+A P+E
Sbjct: 182 FDSDEVADKVCEIHFHEINGKMVECKKAQPKE 213
>Hs4505255 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 362
Score = 175 bits (443), Expect = 2e-43
Identities = 85/181 (46%), Positives = 122/181 (66%), Gaps = 5/181 (2%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFL 232
+P D D KMFIGGL+W+TT+EGLR+YF ++G V E +M+D T RSRGFGF+
Sbjct: 7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFV 66
Query: 233 TFENASSVDEVV-KTQHILDGKVIDPKRAIPREEQDK----TGKIFVGGIGPDVRPKEFE 287
TF + + VD+V+ +++H LD K IDPK A PR Q K T KIFVGG+ + ++ +
Sbjct: 67 TFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVK 126
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEP 347
++F Q+G + DA LM DK T R RGFGF+T+++ D V++VC+ F E K +E K+A+P
Sbjct: 127 QYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
Query: 348 R 348
+
Sbjct: 187 K 187
Score = 72.8 bits (177), Expect = 1e-12
Identities = 35/98 (35%), Positives = 59/98 (59%), Gaps = 1/98 (1%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
P+ + + K+F+GGL+ TT E ++ YF ++G V + +M D T R RGFGF+T
Sbjct: 97 PRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156
Query: 234 FENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDKTG 270
FE+ V++V + H ++ K+++ K+A P+E TG
Sbjct: 157 FESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTG 194
>Hs20373175 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 328
Score = 174 bits (441), Expect = 3e-43
Identities = 84/174 (48%), Positives = 117/174 (66%), Gaps = 5/174 (2%)
Query: 180 DLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASS 239
D D KMFIGGL+W+T+ + LRDYFSK+G + E +M+D T RSRGFGF+TF + +S
Sbjct: 15 DSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPAS 74
Query: 240 VDEVV-KTQHILDGKVIDPKRAIPREEQDK----TGKIFVGGIGPDVRPKEFEEFFSQWG 294
VD+V+ + H LD K IDPK A PR Q K T KIFVGG+ + ++ +++F Q+G
Sbjct: 75 VDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFG 134
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ DA LM DK T R RGFGF+T++ D V++VC+ F E K +E K+A+P+
Sbjct: 135 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188
Score = 70.1 bits (170), Expect = 9e-12
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
P+ + + K+F+GGL+ T E ++ YF ++G V + +M D T R RGFGF+T
Sbjct: 98 PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157
Query: 234 FENASSVDEVVKTQ-HILDGKVIDPKRAIPRE 264
FEN V++V + H ++ K+++ K+A P+E
Sbjct: 158 FENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
>At5g47620 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 169 bits (427), Expect = 1e-41
Identities = 81/178 (45%), Positives = 116/178 (64%), Gaps = 16/178 (8%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+FIGG++WET+E+ LRDYF +G V E IMKD ATGR+RGFGF+ F + + + VV
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 247 QHILDGKVIDPKRAIPREEQ----------------DKTGKIFVGGIGPDVRPKEFEEFF 290
+HI+DGK+++ K+A+PR++ + KIFVGG+ V EF+++F
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Query: 291 SQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+Q+G I D +M D T R RGFGFI+YD+ +AVD+V Q F E GK +E+K A P+
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 72.0 bits (175), Expect = 2e-12
Identities = 32/79 (40%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV-K 245
K+F+GGL TE + YF+++G + +V +M D T R RGFGF+++++ +VD+V+ K
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 246 TQHILDGKVIDPKRAIPRE 264
T H L+GK+++ K A+P++
Sbjct: 167 TFHELNGKMVEVKLAVPKD 185
>At4g26650 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 524
Score = 167 bits (423), Expect = 4e-41
Identities = 78/188 (41%), Positives = 117/188 (61%), Gaps = 23/188 (12%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
D+ K+FIGG++W+T EE L++YF KYG + E IM+D TGR+RGFGF+ F + S + V
Sbjct: 6 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 65
Query: 244 VKTQHILDGKVIDPKRAIPREEQD-----------------------KTGKIFVGGIGPD 280
+ +HI+DG+ ++ K+A+PR++Q +T KIFVGG+
Sbjct: 66 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 125
Query: 281 VRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQI 340
+ EF+ +F Q+G+I D +M D +T R RGFGFIT+D+ ++VD V F E GK +
Sbjct: 126 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 185
Query: 341 EIKRAEPR 348
E+KRA P+
Sbjct: 186 EVKRAVPK 193
Score = 80.5 bits (197), Expect = 6e-15
Identities = 39/84 (46%), Positives = 58/84 (68%), Gaps = 1/84 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV-K 245
K+F+GGL TE ++YF ++G +A+V +M D T R RGFGF+TF++ SVD V+ K
Sbjct: 116 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 175
Query: 246 TQHILDGKVIDPKRAIPREEQDKT 269
T H L+GK+++ KRA+P+E T
Sbjct: 176 TFHELNGKMVEVKRAVPKELSSTT 199
Score = 75.5 bits (184), Expect = 2e-13
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
E GK+F+GGI D + +E+F ++G +++A +M D+ TGR+RGFGFI + P
Sbjct: 2 ESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSV 61
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
+RV +K I G+ +E K+A PR
Sbjct: 62 AERVIMDKHI-IDGRTVEAKKAVPR 85
>At3g07810 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 492
Score = 166 bits (421), Expect = 7e-41
Identities = 85/237 (35%), Positives = 132/237 (54%), Gaps = 22/237 (9%)
Query: 181 LSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV 240
+ D K+FIGG++W+T EE L++YFS +G V E I+KD TGR+RGFGF+ F + +
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 241 DEVVKTQHILDGKVIDPKRAIPREEQD------------------KTGKIFVGGIGPDVR 282
+ V+ +H +DG++++ K+A+PR++Q+ +T KIFVGG+ V
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 283 PKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEI 342
+F+ +F Q+G+ D +M D +T R RGFGFITYD+ +AV++V F E GK +E+
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 343 KRAEPRXX----XXXXXXXXXXXXXXNMSNPMQQYQMFQNPMMAGGFNPMMATGFNP 395
KRA P+ ++N + Y NP GG+ M F+P
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSP 237
>At2g33410 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 404
Score = 160 bits (406), Expect = 4e-39
Identities = 77/188 (40%), Positives = 117/188 (61%), Gaps = 20/188 (10%)
Query: 181 LSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV 240
+ D K+FIGG++W+T E LR+YFS +G V +V +M++ ATGR RGFGF+ F + + +
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 241 DEVVKTQHILDGKVIDPKRAIPREEQD--------------------KTGKIFVGGIGPD 280
D V++ +H +D + +D KRA+ REEQ +T KIFVGG+ P
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 281 VRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQI 340
+ EF +F +G + DA +M+D+ T R RGFGF+++D+ D+VD V F + GKQ+
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 341 EIKRAEPR 348
E+KRA P+
Sbjct: 181 EVKRALPK 188
Score = 72.8 bits (177), Expect = 1e-12
Identities = 37/79 (46%), Positives = 53/79 (66%), Gaps = 1/79 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV-K 245
K+F+GGL T + R YF YG V++ IM D T R RGFGF++F++ SVD V+ K
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 246 TQHILDGKVIDPKRAIPRE 264
T H L+GK ++ KRA+P++
Sbjct: 171 TFHDLNGKQVEVKRALPKD 189
>At1g17640 [R] KOG0118 FOG: RRM domain
Length = 369
Score = 160 bits (405), Expect = 5e-39
Identities = 78/170 (45%), Positives = 113/170 (65%), Gaps = 8/170 (4%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+GG++WETT E +YF K+G V + IM D TG RGFGF+TF +++ ++V++
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 247 QHILDGKVIDPKRAIPREEQD-------KTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDA 299
H++D + +D KR +PR ++D KT KIFVGG+ P + E + +F +G II+
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEH 186
Query: 300 QLMLDKDTGRSRGFGFITYDTPDAVDRV-CQNKFIEFKGKQIEIKRAEPR 348
Q+M D TGRSRGFGF+T+ T D+VDR+ K E KQ+EIKRAEP+
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 61.6 bits (148), Expect = 3e-09
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 233 TFENASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQ 292
TF++ + V T I +D + + GK+FVGG+ + + F +F +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHS--SSSMSSPGKLFVGGVSWETTAETFANYFGK 88
Query: 293 WGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+G ++D+ +M D+ TG RGFGF+T+ ++V + + +++++KR PR
Sbjct: 89 FGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHV-IDDRKVDLKRTLPR 143
>At5g40490 [R] KOG0118 FOG: RRM domain
Length = 423
Score = 157 bits (398), Expect = 3e-38
Identities = 81/167 (48%), Positives = 110/167 (65%), Gaps = 5/167 (2%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+GGL ETT +F KYG + + IMKD TG+ RGFGF+T+ ++S VD+V++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 247 QHILDGKVIDPKRAIPREEQD----KTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLM 302
HI+ GK ++ KR IPR KT KIFVGGI V EF+EFF Q+G + + Q+M
Sbjct: 103 NHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
Query: 303 LDKDTGRSRGFGFITYDTPDAVDR-VCQNKFIEFKGKQIEIKRAEPR 348
D TGRSRGFGF+TY++ D VD + + IE G Q+EIK+AEP+
Sbjct: 163 RDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 80.9 bits (198), Expect = 5e-15
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 13/115 (11%)
Query: 246 TQHILDGKVIDPKRAIPREEQD------------KTGKIFVGGIGPDVRPKEFEEFFSQW 293
T+ +++ ++ DPK + E+ D GKIFVGG+ + EF + F ++
Sbjct: 6 TETVIEDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKY 65
Query: 294 GSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
G I D+ +M D+ TG+ RGFGF+TY VD+V Q+ I GKQ+EIKR PR
Sbjct: 66 GEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHI-IIGKQVEIKRTIPR 119
>7301687 [R] KOG0118 FOG: RRM domain
Length = 365
Score = 154 bits (389), Expect = 3e-37
Identities = 69/171 (40%), Positives = 116/171 (67%), Gaps = 7/171 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ TT+E L+ +F K+G + +V +MKD T RSRGFGF+T+ ++S +DE
Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 89
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
K++ H +DG+V++PKRA+PR++ D K+FVG + D + ++F +G+I+
Sbjct: 90 KSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIV 149
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
D +++DK+TG+ RGF F+ +D D VD+V K + GK +++K+A P+
Sbjct: 150 DINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 200
Score = 78.6 bits (192), Expect = 2e-14
Identities = 36/95 (37%), Positives = 61/95 (63%), Gaps = 1/95 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+F+G L + E+ +RDYF +G + ++ I+ D TG+ RGF F+ F++ VD+VV
Sbjct: 121 VKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV 180
Query: 245 -KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
+ QH L+GK++D K+A+P++ + G GG G
Sbjct: 181 LQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPG 215
Score = 65.5 bits (158), Expect = 2e-10
Identities = 31/84 (36%), Positives = 48/84 (56%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E + K+F+GG+ + + F +WG+I+D +M D T RSRGFGFITY +
Sbjct: 26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85
Query: 325 DRVCQNKFIEFKGKQIEIKRAEPR 348
D +++ + G+ +E KRA PR
Sbjct: 86 DEAQKSRPHKIDGRVVEPKRAVPR 109
>7301686 [R] KOG0118 FOG: RRM domain
Length = 363
Score = 154 bits (389), Expect = 3e-37
Identities = 69/171 (40%), Positives = 116/171 (67%), Gaps = 7/171 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ TT+E L+ +F K+G + +V +MKD T RSRGFGF+T+ ++S +DE
Sbjct: 29 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 88
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
K++ H +DG+V++PKRA+PR++ D K+FVG + D + ++F +G+I+
Sbjct: 89 KSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIV 148
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
D +++DK+TG+ RGF F+ +D D VD+V K + GK +++K+A P+
Sbjct: 149 DINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPK 199
Score = 78.6 bits (192), Expect = 2e-14
Identities = 36/95 (37%), Positives = 61/95 (63%), Gaps = 1/95 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+F+G L + E+ +RDYF +G + ++ I+ D TG+ RGF F+ F++ VD+VV
Sbjct: 120 VKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV 179
Query: 245 -KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
+ QH L+GK++D K+A+P++ + G GG G
Sbjct: 180 LQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPG 214
Score = 65.5 bits (158), Expect = 2e-10
Identities = 31/84 (36%), Positives = 48/84 (56%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E + K+F+GG+ + + F +WG+I+D +M D T RSRGFGFITY +
Sbjct: 25 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 84
Query: 325 DRVCQNKFIEFKGKQIEIKRAEPR 348
D +++ + G+ +E KRA PR
Sbjct: 85 DEAQKSRPHKIDGRVVEPKRAVPR 108
>7297190 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 421
Score = 150 bits (378), Expect = 7e-36
Identities = 69/167 (41%), Positives = 114/167 (67%), Gaps = 5/167 (2%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+GGL+WETT+E L YF ++G + + +MK+ +GRSRGFGF+TF + ++V+ V++
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 247 -QHILDGKVIDPKRAIPRE-EQDKTG---KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
H LDG+ IDPK PR ++ K G K+F+GG+ +V + FF+++G + + +
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
M D++ +SRGFGF++++ +V+ V ++I GKQ+EIK+AEPR
Sbjct: 128 MYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
Score = 70.9 bits (172), Expect = 5e-12
Identities = 33/84 (39%), Positives = 51/84 (60%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E+D+ GK+FVGG+ + + +F ++G IID +M + ++GRSRGFGF+T+ P V
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 325 DRVCQNKFIEFKGKQIEIKRAEPR 348
+ V QN G+ I+ K PR
Sbjct: 62 NHVLQNGPHTLDGRTIDPKPCNPR 85
>Hs4504447 [R] KOG0118 FOG: RRM domain
Length = 341
Score = 149 bits (376), Expect = 1e-35
Identities = 69/169 (40%), Positives = 110/169 (64%), Gaps = 7/169 (4%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+FIGGL++ETTEE LR+Y+ ++G + + +M+D A+ RSRGFGF+TF + + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 247 Q-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSIIDA 299
+ H +DG+V++PKRA+ REE K G K+FVGGI D ++F ++G I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 300 QLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+++ D+ +G+ RGFGF+T+D D VD++ K+ G E+++A R
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 73.9 bits (180), Expect = 6e-13
Identities = 31/85 (36%), Positives = 57/85 (66%), Gaps = 1/85 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+F+GG+ +T E LRDYF +YG + ++I+ D +G+ RGFGF+TF++ VD++V
Sbjct: 99 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
Query: 245 -KTQHILDGKVIDPKRAIPREEQDK 268
+ H ++G + ++A+ R+E +
Sbjct: 159 LQKYHTINGHNAEVRKALSRQEMQE 183
Score = 59.3 bits (142), Expect = 2e-08
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E+++ K+F+GG+ + + ++ QWG + D +M D + RSRGFGF+T+ + V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 325 DRVCQNKFIEFKGKQIEIKRAEPR 348
D + G+ +E KRA R
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAR 87
>Hs14043072 [R] KOG0118 FOG: RRM domain
Length = 353
Score = 149 bits (376), Expect = 1e-35
Identities = 69/169 (40%), Positives = 110/169 (64%), Gaps = 7/169 (4%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+FIGGL++ETTEE LR+Y+ ++G + + +M+D A+ RSRGFGF+TF + + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 247 Q-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSIIDA 299
+ H +DG+V++PKRA+ REE K G K+FVGGI D ++F ++G I
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 300 QLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+++ D+ +G+ RGFGF+T+D D VD++ K+ G E+++A R
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 73.9 bits (180), Expect = 6e-13
Identities = 31/85 (36%), Positives = 57/85 (66%), Gaps = 1/85 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+F+GG+ +T E LRDYF +YG + ++I+ D +G+ RGFGF+TF++ VD++V
Sbjct: 111 VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Query: 245 -KTQHILDGKVIDPKRAIPREEQDK 268
+ H ++G + ++A+ R+E +
Sbjct: 171 LQKYHTINGHNAEVRKALSRQEMQE 195
Score = 60.1 bits (144), Expect = 9e-09
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 263 REEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
+ E+++ K+F+GG+ + + ++ QWG + D +M D + RSRGFGF+T+ +
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 323 AVDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + G+ +E KRA R
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAR 99
>Hs13654587 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 148 bits (373), Expect = 2e-35
Identities = 69/171 (40%), Positives = 109/171 (63%), Gaps = 7/171 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ETT+E LR +F ++G + + +M+D T RSRGFGF+T+ VD +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
T H +DG+V++PKRA+ RE+ + G KIFVGGI D ++F Q+G I
Sbjct: 73 NTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
++M D+ +G+ RGF F+T+D D+VD++ K+ KG E+++A P+
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
Score = 66.6 bits (161), Expect = 9e-11
Identities = 34/91 (37%), Positives = 51/91 (55%), Gaps = 1/91 (1%)
Query: 258 KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFIT 317
K A P+E + + K+F+GG+ + + F QWG++ D +M D +T RSRGFGF+T
Sbjct: 3 KSASPKEPE-QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 318 YDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
Y T + VD + G+ +E KRA R
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSR 92
>Hs9506537 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 407
Score = 147 bits (370), Expect = 6e-35
Identities = 76/184 (41%), Positives = 110/184 (59%), Gaps = 19/184 (10%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
+I K+F+GGL+W TT+E LR YFS+YG V + IMKD T +SRGFGF+ F++ + V V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 244 VKTQ-HILDGKVIDPKRAIPREEQ------------------DKTGKIFVGGIGPDVRPK 284
+ ++ H LDG+ IDPK PR Q K+ KIFVGGI +
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDYSKSNKIFVGGIPHNCGET 127
Query: 285 EFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKR 344
E E+F ++G + + ++ D + R RGFGFIT++ +VD+ F + GK++E+KR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 345 AEPR 348
AEPR
Sbjct: 188 AEPR 191
Score = 76.3 bits (186), Expect = 1e-13
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 175 KAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF 234
K ++D S+ NK+F+GG+ E LR+YF K+G V EV ++ D R RGFGF+TF
Sbjct: 103 KGPRSDYSKS-NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161
Query: 235 ENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDK 268
E+ SVD+ V H + GK ++ KRA PR+ + +
Sbjct: 162 EDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQ 196
Score = 66.2 bits (160), Expect = 1e-10
Identities = 30/82 (36%), Positives = 47/82 (56%)
Query: 267 DKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR 326
D+ GK+FVGG+ + +FSQ+G ++D +M DK T +SRGFGF+ + P+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 327 VCQNKFIEFKGKQIEIKRAEPR 348
V ++ G+ I+ K PR
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPR 88
>Hs4885423 [R] KOG0118 FOG: RRM domain
Length = 420
Score = 147 bits (370), Expect = 6e-35
Identities = 70/167 (41%), Positives = 113/167 (66%), Gaps = 1/167 (0%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
+D KMFIGGL+W+T+++ L +Y S++G V + I D TGRSRGFGF+ F++A+SVD+
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 243 VVKT-QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
V++ +H LDGK+IDPKRA + ++ K+FVGG+ PD ++ +E+F +G I + +L
Sbjct: 205 VLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 264
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+D T RGF FITY + V ++ ++++ + + EIK A+P+
Sbjct: 265 PMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPK 311
Score = 69.3 bits (168), Expect = 1e-11
Identities = 32/83 (38%), Positives = 51/83 (60%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+ Q GK+F+GG+ D K+ E+ S++G ++D + D TGRSRGFGF+ + +
Sbjct: 142 KNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 201
Query: 324 VDRVCQNKFIEFKGKQIEIKRAE 346
VD+V + K + GK I+ KRA+
Sbjct: 202 VDKVLELKEHKLDGKLIDPKRAK 224
>Hs14110417 [R] KOG0118 FOG: RRM domain
Length = 336
Score = 146 bits (368), Expect = 9e-35
Identities = 75/177 (42%), Positives = 112/177 (62%), Gaps = 4/177 (2%)
Query: 173 EPKAIKADLSR---DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGF 229
E + K D S+ D KMFIGGL+W+TT++ L+DYFSK+G V + + D TGRSRGF
Sbjct: 62 ESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGF 121
Query: 230 GFLTFENASSVDEVV-KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEE 288
GF+ F+ + SVD+V+ + +H L+GKVIDPKRA + ++ KIFVGG+ PD ++ E
Sbjct: 122 GFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIRE 181
Query: 289 FFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
+F +G + +L +D T + RGF FIT+ + V ++ + K+ + EIK A
Sbjct: 182 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 238
Score = 76.3 bits (186), Expect = 1e-13
Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 263 REEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
+ E+D+ GK+F+GG+ D K+ +++FS++G ++D L LD TGRSRGFGF+ + +
Sbjct: 72 KNEEDE-GKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 130
Query: 323 AVDRVCQNKFIEFKGKQIEIKRAE 346
+VD+V K + GK I+ KRA+
Sbjct: 131 SVDKVMDQKEHKLNGKVIDPKRAK 154
>Hs4758542 [R] KOG0118 FOG: RRM domain
Length = 284
Score = 145 bits (365), Expect = 2e-34
Identities = 73/167 (43%), Positives = 113/167 (66%), Gaps = 3/167 (1%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
D KMF+GGL+W+T+++ L+DYF+K+G V + I D TGRSRGFGF+ F++A+SV++V
Sbjct: 66 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 125
Query: 244 V-KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKE-FEEFFSQWGSIIDAQL 301
+ + +H LDG+VIDPK+A+ ++D KIFVGG+ P+ +E E+F ++G I +L
Sbjct: 126 LDQKEHRLDGRVIDPKKAMAM-KKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIEL 184
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+D + RGF FIT+ + V +V + KF G + EIK A+P+
Sbjct: 185 PMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 231
Score = 70.1 bits (170), Expect = 9e-12
Identities = 32/93 (34%), Positives = 57/93 (60%), Gaps = 6/93 (6%)
Query: 259 RAIPREE------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRG 312
R PR++ ++ GK+FVGG+ D K+ +++F+++G ++D + +D +TGRSRG
Sbjct: 51 RTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 110
Query: 313 FGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
FGFI + +V++V K G+ I+ K+A
Sbjct: 111 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 143
Score = 60.8 bits (146), Expect = 5e-09
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWET-TEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
+PK A + K+F+GGLN E+ TEE +R+YF ++G + +++ D + RGF F
Sbjct: 139 DPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVF 198
Query: 232 LTFENASSVDEVV-KTQHILDGKVIDPKRAIPRE 264
+TF+ V +V+ K H + G + K A P+E
Sbjct: 199 ITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 232
>Hs14110404 [R] KOG0118 FOG: RRM domain
Length = 331
Score = 145 bits (365), Expect = 2e-34
Identities = 73/167 (43%), Positives = 113/167 (66%), Gaps = 3/167 (1%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
D KMF+GGL+W+T+++ L+DYF+K+G V + I D TGRSRGFGF+ F++A+SV++V
Sbjct: 66 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 125
Query: 244 V-KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKE-FEEFFSQWGSIIDAQL 301
+ + +H LDG+VIDPK+A+ ++D KIFVGG+ P+ +E E+F ++G I +L
Sbjct: 126 LDQKEHRLDGRVIDPKKAMAM-KKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIEL 184
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+D + RGF FIT+ + V +V + KF G + EIK A+P+
Sbjct: 185 PMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPK 231
Score = 70.1 bits (170), Expect = 9e-12
Identities = 32/93 (34%), Positives = 57/93 (60%), Gaps = 6/93 (6%)
Query: 259 RAIPREE------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRG 312
R PR++ ++ GK+FVGG+ D K+ +++F+++G ++D + +D +TGRSRG
Sbjct: 51 RTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 110
Query: 313 FGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
FGFI + +V++V K G+ I+ K+A
Sbjct: 111 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 143
Score = 60.8 bits (146), Expect = 5e-09
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWET-TEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
+PK A + K+F+GGLN E+ TEE +R+YF ++G + +++ D + RGF F
Sbjct: 139 DPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVF 198
Query: 232 LTFENASSVDEVV-KTQHILDGKVIDPKRAIPRE 264
+TF+ V +V+ K H + G + K A P+E
Sbjct: 199 ITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 232
>7301350 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 611
Score = 145 bits (365), Expect = 2e-34
Identities = 73/171 (42%), Positives = 112/171 (64%), Gaps = 9/171 (5%)
Query: 187 KMFIGGLNWETTEEGLRDYF----SKYGAVAEVKIMKDTATG-RSRGFGFLTFENASSVD 241
K+F+GGL+W+T+ + L++YF S+ A + K G RSRGFGF+TF+ +V+
Sbjct: 176 KLFVGGLSWQTSSDKLKEYFNIEESRVKDKAGSRSRKQRIPGLRSRGFGFITFQEPCTVE 235
Query: 242 EVVKTQ-HILDGKVIDPKRAIPRE---EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSII 297
+V+K H LDGK IDPK A P+ + +KT KIFVGG+ D +E + +FSQ+G +
Sbjct: 236 KVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVE 295
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ +++D+ T R RGFGF+T++ D VDRVC+ F K K++E K+A+P+
Sbjct: 296 ETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 346
>7299788 [R] KOG0118 FOG: RRM domain
Length = 385
Score = 144 bits (363), Expect = 4e-34
Identities = 67/168 (39%), Positives = 106/168 (62%), Gaps = 7/168 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ TT++GL+ +F K+G + +V +MKD T RSRGFGF+T+ + +D
Sbjct: 23 LRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQ 82
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ H +DG+ ++PKRA+PR+E D K+FVGG+ D + E+F +G I+
Sbjct: 83 NARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIV 142
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
++ DKDTG+ RGF FI +D D VD++ K K K +++K+A
Sbjct: 143 SVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKA 190
Score = 63.2 bits (152), Expect = 1e-09
Identities = 31/84 (36%), Positives = 46/84 (53%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E ++ K+F+GG+ + F +WG+I+D +M D T RSRGFGFITY +
Sbjct: 19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMI 78
Query: 325 DRVCQNKFIEFKGKQIEIKRAEPR 348
D + + G+ +E KRA PR
Sbjct: 79 DNAQNARPHKIDGRTVEPKRAVPR 102
>Hs14110420 [R] KOG0118 FOG: RRM domain
Length = 355
Score = 144 bits (362), Expect = 5e-34
Identities = 72/168 (42%), Positives = 108/168 (63%), Gaps = 1/168 (0%)
Query: 179 ADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENAS 238
A R+ KMFIGGL+W+TT++ L+DYFSK+G V + + D TGRSRGFGF+ F+ +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 239 SVDEVV-KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSII 297
SVD+V+ + +H L+GKVIDPKRA + ++ KIFVGG+ PD ++ E+F +G +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
+L +D T + RGF FIT+ + V ++ + K+ + EIK A
Sbjct: 210 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 257
Score = 73.9 bits (180), Expect = 6e-13
Identities = 34/90 (37%), Positives = 56/90 (61%)
Query: 257 PKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFI 316
P+ + Q + K+F+GG+ D K+ +++FS++G ++D L LD TGRSRGFGF+
Sbjct: 84 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Query: 317 TYDTPDAVDRVCQNKFIEFKGKQIEIKRAE 346
+ ++VD+V K + GK I+ KRA+
Sbjct: 144 LFKESESVDKVMDQKEHKLNGKVIDPKRAK 173
>Hs14110414 [R] KOG0118 FOG: RRM domain
Length = 306
Score = 144 bits (362), Expect = 5e-34
Identities = 72/168 (42%), Positives = 108/168 (63%), Gaps = 1/168 (0%)
Query: 179 ADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENAS 238
A R+ KMFIGGL+W+TT++ L+DYFSK+G V + + D TGRSRGFGF+ F+ +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 239 SVDEVV-KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSII 297
SVD+V+ + +H L+GKVIDPKRA + ++ KIFVGG+ PD ++ E+F +G +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
+L +D T + RGF FIT+ + V ++ + K+ + EIK A
Sbjct: 210 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 257
Score = 73.9 bits (180), Expect = 6e-13
Identities = 34/90 (37%), Positives = 56/90 (61%)
Query: 257 PKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFI 316
P+ + Q + K+F+GG+ D K+ +++FS++G ++D L LD TGRSRGFGF+
Sbjct: 84 PRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 143
Query: 317 TYDTPDAVDRVCQNKFIEFKGKQIEIKRAE 346
+ ++VD+V K + GK I+ KRA+
Sbjct: 144 LFKESESVDKVMDQKEHKLNGKVIDPKRAK 173
>Hs22042102 [R] KOG0118 FOG: RRM domain
Length = 378
Score = 143 bits (361), Expect = 6e-34
Identities = 70/181 (38%), Positives = 110/181 (60%), Gaps = 12/181 (6%)
Query: 172 HEPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
H+PK + K+FIGGL++ETT++ LR++F K+G + + +M+D T RSRGFGF
Sbjct: 26 HDPKE-----PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 80
Query: 232 LTFENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPK 284
+T+ VD + + H +DG+V++PKRA+ RE+ K G KIFVGGI D
Sbjct: 81 VTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY 140
Query: 285 EFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKR 344
++F ++G I ++M D+ +G+ RGF F+T+D D VD++ K+ G E+K+
Sbjct: 141 NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKK 200
Query: 345 A 345
A
Sbjct: 201 A 201
Score = 79.0 bits (193), Expect = 2e-14
Identities = 34/96 (35%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 176 AIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFE 235
++K + K+F+GG+ +T E LRDYF KYG + +++M+D +G+ RGF F+TF+
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
Query: 236 NASSVDE-VVKTQHILDGKVIDPKRAIPREEQDKTG 270
+ +VD+ VV+ H ++G + K+A+ ++E G
Sbjct: 176 DHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAG 211
Score = 62.8 bits (151), Expect = 1e-09
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + E F +WG++ D +M D T RSRGFGF+TY +
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 89 VDAAMCARPHKVDGRVVEPKRAVSR 113
>Hs4504445 [R] KOG0118 FOG: RRM domain
Length = 320
Score = 142 bits (359), Expect = 1e-33
Identities = 66/168 (39%), Positives = 106/168 (62%), Gaps = 7/168 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ETT+E LR +F ++G + + +M+D T RSRGFGF+T+ VD +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ H +DG+V++PKRA+ RE+ + G KIFVGGI D ++F Q+G I
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
++M D+ +G+ RGF F+T+D D+VD++ K+ G E+++A
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 73.2 bits (178), Expect = 1e-12
Identities = 31/82 (37%), Positives = 56/82 (67%), Gaps = 1/82 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF++ SVD+ V
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Query: 244 VKTQHILDGKVIDPKRAIPREE 265
++ H ++G + ++A+ ++E
Sbjct: 164 IQKYHTVNGHNCEVRKALSKQE 185
Score = 66.2 bits (160), Expect = 1e-10
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + + F QWG++ D +M D +T RSRGFGF+TY T +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSR 92
>Hs14043070 [R] KOG0118 FOG: RRM domain
Length = 372
Score = 142 bits (359), Expect = 1e-33
Identities = 66/168 (39%), Positives = 106/168 (62%), Gaps = 7/168 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ETT+E LR +F ++G + + +M+D T RSRGFGF+T+ VD +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ H +DG+V++PKRA+ RE+ + G KIFVGGI D ++F Q+G I
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
++M D+ +G+ RGF F+T+D D+VD++ K+ G E+++A
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 73.2 bits (178), Expect = 1e-12
Identities = 31/82 (37%), Positives = 56/82 (67%), Gaps = 1/82 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF++ SVD+ V
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Query: 244 VKTQHILDGKVIDPKRAIPREE 265
++ H ++G + ++A+ ++E
Sbjct: 164 IQKYHTVNGHNCEVRKALSKQE 185
Score = 66.2 bits (160), Expect = 1e-10
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + + F QWG++ D +M D +T RSRGFGF+TY T +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSR 92
>Hs13650572 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 141 bits (356), Expect = 2e-33
Identities = 66/168 (39%), Positives = 105/168 (62%), Gaps = 7/168 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ETT+E LR +F ++G + + +M+D T RSRGFGF+T+ VD +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ H +DG+V++PKRA+ RE+ + G KIFVGGI D ++F Q+G I
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
++M D+ +G+ RGF F+T+D D+VD+ K+ G E+++A
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNCEVRKA 180
Score = 73.2 bits (178), Expect = 1e-12
Identities = 31/82 (37%), Positives = 56/82 (67%), Gaps = 1/82 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF++ SVD+ V
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKTV 163
Query: 244 VKTQHILDGKVIDPKRAIPREE 265
++ H ++G + ++A+ ++E
Sbjct: 164 IQKYHTVNGHNCEVRKALSKQE 185
Score = 66.2 bits (160), Expect = 1e-10
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + + F QWG++ D +M D +T RSRGFGF+TY T +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSR 92
>Hs22067735 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 268
Score = 140 bits (352), Expect = 7e-33
Identities = 65/168 (38%), Positives = 105/168 (61%), Gaps = 7/168 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ETT+E LR +F ++G + + +M+D T RSRGFGF+T+ VD +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ H +DG+V++PKRA+ RE+ + KIFVGGI D ++F Q+G I
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
++M D+ +G+ RGF F+T+D D+VD++ K+ G E+++A
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 73.9 bits (180), Expect = 6e-13
Identities = 32/89 (35%), Positives = 58/89 (64%), Gaps = 1/89 (1%)
Query: 178 KADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENA 237
+ D + K+F+GG+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF++
Sbjct: 97 RPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156
Query: 238 SSVDE-VVKTQHILDGKVIDPKRAIPREE 265
SVD+ V++ H ++G + ++A+ ++E
Sbjct: 157 DSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Score = 66.2 bits (160), Expect = 1e-10
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + + F QWG++ D +M D +T RSRGFGF+TY T +
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSR 92
>At4g14300 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 406
Score = 139 bits (351), Expect = 9e-33
Identities = 72/188 (38%), Positives = 109/188 (57%), Gaps = 25/188 (13%)
Query: 181 LSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV 240
+ D K+F+GG++WET E+ LR++F+ YG V++ +M+D TGR RGFG +
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGIRKNRCIYFL 60
Query: 241 DEVVKTQHILDGKVIDPKRAIPREEQ--------------------DKTGKIFVGGIGPD 280
+++LD +D KRA+ REEQ +KT KIFVGG+ P
Sbjct: 61 -----LRYVLDLGKVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 115
Query: 281 VRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQI 340
+ +EF ++F +G + D +M D+ T R RGFGF+++D+ DAVD V F + GKQ+
Sbjct: 116 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 175
Query: 341 EIKRAEPR 348
E+KRA P+
Sbjct: 176 EVKRALPK 183
Score = 82.4 bits (202), Expect = 2e-15
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 180 DLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASS 239
D K+F+GGL T+E R YF YG V +V IM D AT R RGFGF++F++ +
Sbjct: 99 DAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDA 158
Query: 240 VDEVV-KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
VD V+ KT H L GK ++ KRA+P++ G +GG G
Sbjct: 159 VDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGG 198
>CE17059 [R] KOG0118 FOG: RRM domain
Length = 346
Score = 137 bits (346), Expect = 3e-32
Identities = 60/168 (35%), Positives = 113/168 (66%), Gaps = 7/168 (4%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
++ K+F+GGL TT++ +R+++S++G + ++ +M+D T RSRGFGF+TF + VD
Sbjct: 21 NLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA 80
Query: 244 VKTQ-HILDGKVIDPKRAIPREEQDK------TGKIFVGGIGPDVRPKEFEEFFSQWGSI 296
+K + HI+DGK +DPKRA+PR+++++ T +++V G+ D E+F+++G++
Sbjct: 81 MKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTV 140
Query: 297 IDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKR 344
++++LDK T + RGFGF+T+D D+VD+ K G + ++++
Sbjct: 141 TKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRK 188
Score = 63.9 bits (154), Expect = 6e-10
Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E + KIFVGG+ + EF+SQ+G I D +M D T RSRGFGF+T+ V
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 325 DRVCQNKFIEFKGKQIEIKRAEPR 348
D + + GK ++ KRA PR
Sbjct: 78 DAAMKQRPHIIDGKTVDPKRAVPR 101
>At1g58470 [R] KOG0118 FOG: RRM domain
Length = 360
Score = 137 bits (345), Expect = 4e-32
Identities = 72/195 (36%), Positives = 108/195 (54%), Gaps = 30/195 (15%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
D K+F+GG+ ET+EE L+ YFS+YGAV E + K+ TG+ RGFGF+ F N V +
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Query: 244 VKTQHILDGKVIDPKRAIPREE------------------------------QDKTGKIF 273
++ H + GK +D ++AI + E +T KIF
Sbjct: 64 LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123
Query: 274 VGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFI 333
VGG+ + +EF+ +F ++G D +M D T R RGFGF+TYD+ D+V+ V Q+ F
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183
Query: 334 EFKGKQIEIKRAEPR 348
E K++E+KRA P+
Sbjct: 184 ELSDKRVEVKRAIPK 198
Score = 75.5 bits (184), Expect = 2e-13
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+GGL+ TTEE + YF ++G +V +M D T R RGFGF+T+++ SV+ V+++
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 247 Q-HILDGKVIDPKRAIPRE 264
H L K ++ KRAIP+E
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
>Hs5031693 [R] KOG0118 FOG: RRM domain
Length = 269
Score = 137 bits (344), Expect = 6e-32
Identities = 67/181 (37%), Positives = 108/181 (59%), Gaps = 12/181 (6%)
Query: 172 HEPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
H+PK + K+FIGGL++ETT++ LR++F K+G + + +M+D T RSRGFGF
Sbjct: 26 HDPKE-----PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCLVMRDPQTKRSRGFGF 80
Query: 232 LTFENASSVDEVVKTQHI-LDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPK 284
+T+ + VD + + +DG+V++PKRA+ RE+ K G KIFVG I D
Sbjct: 81 VTYSCVTEVDAAIGARPFKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGSIKEDTEEY 140
Query: 285 EFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKR 344
++F ++G I ++M D+ +G+ RGF +T+D D VD++ K+ G E+K+
Sbjct: 141 NLRDYFEKYGKIETIEVMEDRQSGKKRGFASVTFDDHDTVDKIVVQKYHTINGHNCEVKK 200
Query: 345 A 345
A
Sbjct: 201 A 201
Score = 63.2 bits (152), Expect = 1e-09
Identities = 30/85 (35%), Positives = 46/85 (53%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + E F +WG++ D +M D T RSRGFGF+TY
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCLVMRDPQTKRSRGFGFVTYSCVTE 88
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 89 VDAAIGARPFKVDGRVVEPKRAVSR 113
>Hs22049560 [R] KOG0118 FOG: RRM domain
Length = 222
Score = 135 bits (341), Expect = 1e-31
Identities = 64/170 (37%), Positives = 105/170 (61%), Gaps = 7/170 (4%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
+ + K+FIGGL++ETT E LR +F ++G + + +M+D T SRGFGF+T+ VD
Sbjct: 11 KQLRKLFIGGLSFETTNESLRSHFEQWGTLMDCVVMRDPNTKCSRGFGFVTYATVEEVDA 70
Query: 243 VVKTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGS 295
+ + H +DG+V++ KRA+ RE+ + G KIFVGGI D + ++F Q+G
Sbjct: 71 AMNARPHKVDGRVVESKRAVSREDSQRPGAHLTVKKIFVGGIKEDTKEHHLRDYFEQYGK 130
Query: 296 IIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
I ++M D+ +G+ RGF F+T+D D+VD++ K+ G E+++A
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHICEVRKA 180
Score = 76.6 bits (187), Expect = 9e-14
Identities = 32/86 (37%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF++ SVD+ V
Sbjct: 104 VKKIFVGGIKEDTKEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Query: 244 VKTQHILDGKVIDPKRAIPREEQDKT 269
++ H ++G + + ++A+ ++E T
Sbjct: 164 IQKYHTVNGHICEVRKALSKQEMAST 189
Score = 62.8 bits (151), Expect = 1e-09
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E + K+F+GG+ + + F QWG+++D +M D +T SRGFGF+TY T +
Sbjct: 8 KEPKQLRKLFIGGLSFETTNESLRSHFEQWGTLMDCVVMRDPNTKCSRGFGFVTYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 68 VDAAMNARPHKVDGRVVESKRAVSR 92
>Hs5803036 [R] KOG0118 FOG: RRM domain
Length = 305
Score = 132 bits (331), Expect = 2e-30
Identities = 64/169 (37%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+FIGGLN +T+E GLR +F +G + + ++ + T RSR FGF+T+ N D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 247 Q-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSIIDA 299
H +DG ++ KRA+ RE+ + G K+FVGG+ DV + E FSQ+G++ A
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 300 QLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+++ DK +G+ RGFGF+ + DA D+ KF +G ++E+K+A P+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 67.4 bits (163), Expect = 6e-11
Identities = 32/95 (33%), Positives = 58/95 (60%), Gaps = 7/95 (7%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+F+GGL + E L ++FS++G V + +I+ D +G+ RGFGF+ F+N + D+
Sbjct: 97 VKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAA 156
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
+ H + G ++ K+A+P+E+ I+ GG G
Sbjct: 157 VVKFHPIQGHRVEVKKAVPKED------IYSGGGG 185
>7301511 [R] KOG0118 FOG: RRM domain
Length = 471
Score = 131 bits (330), Expect = 2e-30
Identities = 65/168 (38%), Positives = 106/168 (62%), Gaps = 7/168 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL TTEE L+ ++ ++G V +V +M+D AT RSRGFGF+T+ + VD
Sbjct: 31 LRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQ 90
Query: 245 KTQ-HILDGKVIDPKRAIPREEQD------KTGKIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ + HI+DGK ++ KRA+PR E++ K+FVGG+ + + E+F Q+G+++
Sbjct: 91 ENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
+L+ DK TG+ RGF F+ +D DAVD+ K K +++K++
Sbjct: 151 SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKS 198
Score = 73.9 bits (180), Expect = 6e-13
Identities = 36/84 (42%), Positives = 49/84 (57%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E + K+F+GG+ P + + F+ QWG ++D +M D T RSRGFGFITY V
Sbjct: 27 ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMV 86
Query: 325 DRVCQNKFIEFKGKQIEIKRAEPR 348
DR +N+ GK +E KRA PR
Sbjct: 87 DRAQENRPHIIDGKTVEAKRALPR 110
Score = 71.2 bits (173), Expect = 4e-12
Identities = 40/122 (32%), Positives = 68/122 (54%), Gaps = 3/122 (2%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
P+ + + + K+F+GGL EE LR+YF ++G V VK++ D TG+ RGF F+
Sbjct: 111 PERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVE 170
Query: 234 FENASSVDE-VVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQ 292
F++ +VD+ ++K QH + +D K++I DK K GG+ ++P ++ Q
Sbjct: 171 FDDYDAVDKAILKKQHAIKYVHVDVKKSI--YNLDKKEKQQPGGLANAIKPSLNQQQQQQ 228
Query: 293 WG 294
G
Sbjct: 229 GG 230
>Hs14731484 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 320
Score = 131 bits (329), Expect = 3e-30
Identities = 62/168 (36%), Positives = 102/168 (59%), Gaps = 7/168 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ETT+E LR +F + G + + +M+D T S GFGF+T+ V+ +
Sbjct: 13 LRKLFIGGLSFETTDESLRSHFEQRGTLTDCVVMRDPNTKCSTGFGFVTYATVKEVEAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ +DG+V++PKRA+ RE+ + G KIFVGGI D ++F Q+G I
Sbjct: 73 NARPQKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
++M D+ +G+ RGF F+T+D D+VD++ K+ G E+++A
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 73.2 bits (178), Expect = 1e-12
Identities = 31/82 (37%), Positives = 56/82 (67%), Gaps = 1/82 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF++ SVD+ V
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Query: 244 VKTQHILDGKVIDPKRAIPREE 265
++ H ++G + ++A+ ++E
Sbjct: 164 IQKYHTVNGHNCEVRKALSKQE 185
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + + F Q G++ D +M D +T S GFGF+TY T
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQRGTLTDCVVMRDPNTKCSTGFGFVTYATVKE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
V+ + + G+ +E KRA R
Sbjct: 68 VEAAMNARPQKVDGRVVEPKRAVSR 92
>Hs17458873 [R] KOG0118 FOG: RRM domain
Length = 321
Score = 124 bits (312), Expect = 3e-28
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
+ + K+FIGGL +ET++E LR + ++G + E +M+D T RSRGFGF+ + VD
Sbjct: 11 KQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDA 70
Query: 243 VVKTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGS 295
+ + H + G+V++PK A+ RE+ + G KIFVGGI D +++ Q+G
Sbjct: 71 AMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGK 130
Query: 296 IIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
++M D+ +G+ R F F+T+D D+ D++ K+ G E+++A
Sbjct: 131 TEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Score = 68.9 bits (167), Expect = 2e-11
Identities = 29/82 (35%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDY+ +YG ++IM D +G+ R F F+TF+N S D+ V
Sbjct: 104 VKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIV 163
Query: 244 VKTQHILDGKVIDPKRAIPREE 265
++ HI++G + ++A+ +++
Sbjct: 164 IQKYHIVNGHNCEVRKALSKQK 185
Score = 55.5 bits (132), Expect = 2e-07
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E + K+F+GG+ + + QWG++ + +M D +T RSRGFGF+ Y T +
Sbjct: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E K A R
Sbjct: 68 VDAAMNARPHKMGGRVVEPKTAVSR 92
>CE29317 [R] KOG0118 FOG: RRM domain
Length = 308
Score = 122 bits (305), Expect = 2e-27
Identities = 53/150 (35%), Positives = 100/150 (66%), Gaps = 7/150 (4%)
Query: 202 LRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ-HILDGKVIDPKRA 260
+R+++S++G + ++ +M+D T RSRGFGF+TF + VD +K + HI+DGK +DPKRA
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 261 IPREEQDK------TGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFG 314
+PR+++++ T +++V G+ D E+F+++G++ ++++LDK T + RGFG
Sbjct: 61 VPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFG 120
Query: 315 FITYDTPDAVDRVCQNKFIEFKGKQIEIKR 344
F+T+D D+VD+ K G + ++++
Sbjct: 121 FVTFDDHDSVDQCVLQKSHMVNGHRCDVRK 150
Score = 68.6 bits (166), Expect = 2e-11
Identities = 30/83 (36%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-VVK 245
++++ G+ + TE+ L +YF+KYG V + +I+ D AT + RGFGF+TF++ SVD+ V++
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 136
Query: 246 TQHILDGKVIDPKRAIPREEQDK 268
H+++G D ++ + ++E K
Sbjct: 137 KSHMVNGHRCDVRKGLSKDEMSK 159
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/61 (44%), Positives = 36/61 (58%)
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEP 347
EF+SQ+G I D +M D T RSRGFGF+T+ VD + + GK ++ KRA P
Sbjct: 3 EFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVP 62
Query: 348 R 348
R
Sbjct: 63 R 63
>7299785 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 378
Score = 120 bits (300), Expect = 7e-27
Identities = 55/148 (37%), Positives = 92/148 (62%), Gaps = 6/148 (4%)
Query: 202 LRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV-VKTQHILDGKVIDPKRA 260
LRD+F KYG + + + D TGRSRGF F+ F N ++D+V +HI++ K +DPK+A
Sbjct: 150 LRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA 209
Query: 261 IPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDT 320
R GKIFVGG+ ++ +E + +F Q+G+I++ ++ DK + +GF FIT+D+
Sbjct: 210 KARH-----GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS 264
Query: 321 PDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
V + + + GK++++KRA P+
Sbjct: 265 EQVVTDLLKTPKQKIAGKEVDVKRATPK 292
Score = 64.3 bits (155), Expect = 5e-10
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFL 232
+PK KA K+F+GGL E ++E ++ YF ++G + EV++ D + +GF F+
Sbjct: 205 DPKKAKARHG----KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFI 260
Query: 233 TFENASSVDEVVKT-QHILDGKVIDPKRAIPREEQDKTG 270
TF++ V +++KT + + GK +D KRA P+ E G
Sbjct: 261 TFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMG 299
>Hs17440809 [R] KOG0118 FOG: RRM domain
Length = 187
Score = 115 bits (288), Expect = 2e-25
Identities = 57/168 (33%), Positives = 96/168 (56%), Gaps = 7/168 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGG+++ETT+E LR + ++G + + +M ++ T SRGFGF+T+ VD +
Sbjct: 13 LRKLFIGGMSFETTDESLRSHSEQWGTLTDCVVMSESNTKCSRGFGFVTYATMEEVDAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ H ++G+V++PKRA+ R + + G KIF GGI D ++F Q I
Sbjct: 73 NARPHKVNGRVVEPKRAVSRGDSQRPGAHLTVEKIFAGGIKEDAEEHHLRDYFEQHRKIE 132
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
+++ D+ GR RGF F+ D D+VD+ K+ G E+++A
Sbjct: 133 VIEIVTDQGNGRKRGFDFVNTDDHDSVDKTVIQKYHTVNGHNGEVRKA 180
Score = 58.9 bits (141), Expect = 2e-08
Identities = 28/85 (32%), Positives = 47/85 (54%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + + QWG++ D +M + +T SRGFGF+TY T +
Sbjct: 8 KEPEQLRKLFIGGMSFETTDESLRSHSEQWGTLTDCVVMSESNTKCSRGFGFVTYATMEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 68 VDAAMNARPHKVNGRVVEPKRAVSR 92
>7299787 [R] KOG0118 FOG: RRM domain
Length = 428
Score = 114 bits (286), Expect = 3e-25
Identities = 60/190 (31%), Positives = 107/190 (55%), Gaps = 20/190 (10%)
Query: 176 AIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFE 235
AIK + + K+FIGGL+ +TT E LR +FS++G VA+ +++D + SRGFGF+T+
Sbjct: 22 AIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYV 81
Query: 236 NASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDKTG-------------------KIFVG 275
+ SV+ V + + H +D K+++ K A+PR++ + G +IF+G
Sbjct: 82 DPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLG 141
Query: 276 GIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEF 335
G+ E+FSQ+G + +L++D++TGR R FGF+ + P + ++ +
Sbjct: 142 GLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWI 201
Query: 336 KGKQIEIKRA 345
+E+KR+
Sbjct: 202 LQTLVEVKRS 211
Score = 64.3 bits (155), Expect = 5e-10
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 256 DPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGF 315
D K AI E + KIF+GG+ + FFSQ+G + DA ++ D + SRGFGF
Sbjct: 18 DGKTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGF 77
Query: 316 ITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+TY P +V+ V + + K +E K A PR
Sbjct: 78 VTYVDPKSVEIVQRARPHTIDNKIVETKHALPR 110
>Hs14734196 [R] KOG0118 FOG: RRM domain
Length = 294
Score = 111 bits (277), Expect = 3e-24
Identities = 52/151 (34%), Positives = 88/151 (57%), Gaps = 7/151 (4%)
Query: 202 LRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ-HILDGKVIDPKRA 260
LR +F ++G + + +M+D T RGFGF+T+ VD + + H +DG+V++PKRA
Sbjct: 4 LRSHFEQWGMLTDCVVMRDPNTKHPRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 63
Query: 261 IPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFG 314
+ RE+ ++ G KIFVGGI D + F Q+G I ++M D+ +G+ RGF
Sbjct: 64 VSREDSERPGAHLTVKKIFVGGIKEDTEEHHLRDDFEQYGKIEVIEIMTDRGSGKKRGFA 123
Query: 315 FITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
F+ +D D++D++ K+ G E+++A
Sbjct: 124 FVNFDDHDSMDKIVIQKYHTVNGHNCEVRKA 154
Score = 66.2 bits (160), Expect = 1e-10
Identities = 29/84 (34%), Positives = 54/84 (63%), Gaps = 1/84 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRD F +YG + ++IM D +G+ RGF F+ F++ S+D+ V
Sbjct: 78 VKKIFVGGIKEDTEEHHLRDDFEQYGKIEVIEIMTDRGSGKKRGFAFVNFDDHDSMDKIV 137
Query: 244 VKTQHILDGKVIDPKRAIPREEQD 267
++ H ++G + ++A ++E D
Sbjct: 138 IQKYHTVNGHNCEVRKAPSQQEMD 161
>CE29008 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 305
Score = 95.5 bits (236), Expect = 2e-19
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD-EVVK 245
K+F+GG++ E E L +F++YG VA+ ++ D GRSRGF F+ F +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 246 TQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDK 305
+ + GK ++ K A RE + K+FVGG+ D ++ F Q+G + D + DK
Sbjct: 90 REQTIKGKSVEVKPAKSRENK----KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDK 145
Query: 306 DTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
T R F FI ++ ++ D+ F ++ ++K+A P+
Sbjct: 146 QTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQ 188
Score = 55.8 bits (133), Expect = 2e-07
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 177 IKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFEN 236
+K SR+ K+F+GGL + +E+ LR +F ++G V +++ D T R F F+ FE
Sbjct: 101 VKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEE 160
Query: 237 ASSVDEV-VKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
S D+ +T+ + D K+A+P+ GK F G G
Sbjct: 161 EESADKASSQTKQTFGTRECDVKKAVPQ------GKRFPGAQG 197
>Hs17433768 [R] KOG0118 FOG: RRM domain
Length = 238
Score = 95.1 bits (235), Expect = 2e-19
Identities = 47/135 (34%), Positives = 76/135 (55%), Gaps = 7/135 (5%)
Query: 218 MKDTATGRSRGFGFLTFENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDKTG------ 270
M+D T SRGFGF+T+ VD + + H +DG+V++PKRA+ RE+ + G
Sbjct: 1 MRDPNTKLSRGFGFVTYTTVEEVDAAMNARPHEVDGRVVEPKRAVSREDSQRPGAHLTVK 60
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
KIFVGGI D ++F G + +++ D+ +G+ RGF F+T+D D++D+
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFELCGKMELIEIITDRGSGKKRGFAFVTFDDYDSMDKTVIQ 120
Query: 331 KFIEFKGKQIEIKRA 345
K G E+++A
Sbjct: 121 KCYTVNGHNCEVRKA 135
Score = 61.6 bits (148), Expect = 3e-09
Identities = 27/82 (32%), Positives = 54/82 (64%), Gaps = 1/82 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDYF G + ++I+ D +G+ RGF F+TF++ S+D+ V
Sbjct: 59 VKKIFVGGIKEDTEEHHLRDYFELCGKMELIEIITDRGSGKKRGFAFVTFDDYDSMDKTV 118
Query: 244 VKTQHILDGKVIDPKRAIPREE 265
++ + ++G + ++A+ ++E
Sbjct: 119 IQKCYTVNGHNCEVRKALSKQE 140
>Hs20474934 [R] KOG0118 FOG: RRM domain
Length = 236
Score = 94.4 bits (233), Expect = 4e-19
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 16/162 (9%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+ GGL+ E T E LR +F ++G + + +++D T SRGFGF+T+ VD
Sbjct: 13 LQKLLTGGLSIEATNESLRSHFEQWGTLTDCVVLRDPNTKCSRGFGFVTYATVEEVDAAT 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ H +DG+V++ KRA+ RE+ + G ++G + ++M
Sbjct: 73 NARPHKVDGRVVETKRAVSREDSQRPGAHLT---------------VKKFGKMEVIEIMT 117
Query: 304 DKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
D +G+ R F F+T+D D+VD+ K+ G E+++A
Sbjct: 118 DHGSGKKRDFAFVTFDDHDSVDKTVIQKYHIVNGHNCEVRKA 159
Score = 59.3 bits (142), Expect = 2e-08
Identities = 28/85 (32%), Positives = 46/85 (53%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+ GG+ + + F QWG++ D ++ D +T SRGFGF+TY T +
Sbjct: 8 KEPEQLQKLLTGGLSIEATNESLRSHFEQWGTLTDCVVLRDPNTKCSRGFGFVTYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 68 VDAATNARPHKVDGRVVETKRAVSR 92
>Hs22060967 [R] KOG0118 FOG: RRM domain
Length = 271
Score = 93.2 bits (230), Expect = 9e-19
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
Query: 218 MKDTATGRSRGFGFLTFENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDKTG------ 270
M+D T RSRGF F+T+ VD + + H +D V++PKRA+ RE+ G
Sbjct: 1 MRDPQTKRSRGFVFVTYSYVEEVDAAMCARPHKVDRCVVEPKRAVSREDSVNPGLHLGVK 60
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
K+FVGGI D ++F ++G I ++M D+ +G+ RGF F+T+D D VD++
Sbjct: 61 KLFVGGIKEDTEEYNLRDYFEKYGKIETIEIMEDRQSGKKRGFAFVTFDDHDRVDKIDVQ 120
Query: 331 KFIEFKGKQIEIK 343
K+ G E+K
Sbjct: 121 KYHTINGHNCEVK 133
Score = 70.1 bits (170), Expect = 9e-12
Identities = 30/78 (38%), Positives = 51/78 (64%), Gaps = 1/78 (1%)
Query: 176 AIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFE 235
++ L + K+F+GG+ +T E LRDYF KYG + ++IM+D +G+ RGF F+TF+
Sbjct: 50 SVNPGLHLGVKKLFVGGIKEDTEEYNLRDYFEKYGKIETIEIMEDRQSGKKRGFAFVTFD 109
Query: 236 NASSVDEV-VKTQHILDG 252
+ VD++ V+ H ++G
Sbjct: 110 DHDRVDKIDVQKYHTING 127
>CE11598 [R] KOG0118 FOG: RRM domain
Length = 336
Score = 92.0 bits (227), Expect = 2e-18
Identities = 53/162 (32%), Positives = 87/162 (52%), Gaps = 20/162 (12%)
Query: 180 DLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASS 239
D + K+FIGGL+ +TT+E L +YFS++G V + +++D T SRGFGF+TF + S
Sbjct: 64 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 240 VDEVVKTQ-HILDGKVIDPKRAIPREEQDKT-------------GKIFVGGIGPDVRPKE 285
+ + + H L GK +D KRAIPRE+ K+ + GI V +
Sbjct: 124 AESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGITNGVHSVD 183
Query: 286 -FEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR 326
+F +G++ +++ G+ RG GF+ Y+ ++ DR
Sbjct: 184 SLRVYFETFGTLDQVEIL-----GQPRGLGFVIYEDKESADR 220
Score = 65.5 bits (158), Expect = 2e-10
Identities = 28/78 (35%), Positives = 49/78 (61%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
K+F+GG+ D ++ +FSQWG ++DA ++ D +T SRGFGF+T+ + + + +
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 331 KFIEFKGKQIEIKRAEPR 348
+ + GK ++ KRA PR
Sbjct: 131 RPHKLGGKTVDSKRAIPR 148
>Hs20537262 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 136
Score = 91.3 bits (225), Expect = 4e-18
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 218 MKDTATGRSRGFGFLTFENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDKTG------ 270
M+D T S GFGF+ ++ D + + H +DG+V++PKRA+ RE+ + G
Sbjct: 1 MRDPNTKCSTGFGFVIYDTVEEGDAAMNARPHKVDGRVMEPKRAVSREDSQRPGAHLTVK 60
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
KIFVGGI D ++F Q I ++M D+ +G RGF F+ +D D+VD++
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFEQCRKIEVTEIMTDRVSGNKRGFAFVIFDNHDSVDKIVIQ 120
Query: 331 KFIEFKGKQIEIKRA 345
K+ G E+++A
Sbjct: 121 KYHTVNGHNCEVRKA 135
Score = 61.2 bits (147), Expect = 4e-09
Identities = 28/78 (35%), Positives = 48/78 (60%), Gaps = 1/78 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDYF + + +IM D +G RGF F+ F+N SVD+ V
Sbjct: 59 VKKIFVGGIKEDTEEHHLRDYFEQCRKIEVTEIMTDRVSGNKRGFAFVIFDNHDSVDKIV 118
Query: 244 VKTQHILDGKVIDPKRAI 261
++ H ++G + ++A+
Sbjct: 119 IQKYHTVNGHNCEVRKAL 136
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 91.3 bits (225), Expect = 4e-18
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK- 245
K+F+G L + L F G V V+++ D TGRSRGFGF+T + S V+ +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 246 -TQHILDGKVI-------DPKRAI-----PREEQDKTG---------------KIFVGGI 277
+ LDG+ + PKR PR +G +++VG +
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 278 GPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN-KFIEFK 336
V E FS+ G +++A+++ D+D+GRS+GFGF+TYD+ V ++ +
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 337 GKQIEIKRAEPR 348
G+QI + AE R
Sbjct: 272 GRQIRVSEAEAR 283
Score = 59.7 bits (143), Expect = 1e-08
Identities = 25/74 (33%), Positives = 47/74 (62%), Gaps = 3/74 (4%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
N++++G L+W + L FS+ G V E +++ D +GRS+GFGF+T++++ V +K
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 246 TQHILDGKVIDPKR 259
+ LDG +D ++
Sbjct: 264 S---LDGADLDGRQ 274
>Hs22055112 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 153
Score = 90.9 bits (224), Expect = 5e-18
Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+FIGGL++ETT+E LR + ++G + + +M+D SRG GF+T+ VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHCEQWGMLTDCVVMRDPNFKHSRGCGFVTYATVEEVDAAMNA 74
Query: 247 Q-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ H +DG+V++PKRA+ RE+ + G KIFVGGI D ++F Q +I+
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQLEAIL 132
Score = 54.7 bits (130), Expect = 4e-07
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+GG+ + + QWG + D +M D + SRG GF+TY T +
Sbjct: 8 KEPEQQRKLFIGGLSFETTDESLRSHCEQWGMLTDCVVMRDPNFKHSRGCGFVTYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + + G+ +E KRA R
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSR 92
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 88.6 bits (218), Expect = 2e-17
Identities = 48/173 (27%), Positives = 93/173 (53%), Gaps = 11/173 (6%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK- 245
K+F+G L ++ + L F + G V +++ + T +SRGFGF+T + + V+
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 246 -TQHILDGKVIDPKRAIPREEQDKTG--------KIFVGGIGPDVRPKEFEEFFSQWGSI 296
++ L+G+++ +A PR + + +++VG + DV E+ FS+ G +
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 297 IDAQLMLDKDTGRSRGFGFITY-DTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
++A+++ D++TGRSRGFGF+T D + + + +G+ I + AE R
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 51.6 bits (122), Expect = 3e-06
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E + K+FVG + DV + F Q G++ A+++ +++T +SRGFGF+T + D
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 325 DRVCQ--NKFIEFKGKQIEIKRAEPR 348
+ + N++ + G+ + + +A PR
Sbjct: 205 ETAVEKFNRY-DLNGRLLTVNKAAPR 229
>At2g41060 [R] KOG0118 FOG: RRM domain
Length = 451
Score = 88.6 bits (218), Expect = 2e-17
Identities = 51/186 (27%), Positives = 88/186 (46%), Gaps = 19/186 (10%)
Query: 177 IKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFEN 236
I AD K+F+ GL W+T + L D F +YG + + K + D +G+S+G+GF+ F++
Sbjct: 119 IVADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
Query: 237 ASSVDEVVKTQH-----------------ILDGKVIDPKRAIPREEQDKTGKIFVGGIGP 279
S +K + V+ P + E + KI+V +
Sbjct: 179 RSGARNALKQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQR--KIYVSNVSA 236
Query: 280 DVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQ 339
D+ P++ EFFS++G I + L LDK TGR +GF Y + ++ + + F+G
Sbjct: 237 DIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHV 296
Query: 340 IEIKRA 345
+ +A
Sbjct: 297 LHCHKA 302
>Hs22044597 [R] KOG0118 FOG: RRM domain
Length = 118
Score = 87.0 bits (214), Expect = 7e-17
Identities = 48/113 (42%), Positives = 69/113 (60%), Gaps = 12/113 (10%)
Query: 172 HEPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
H+PK + K FIGGL++ETT++GLR++F K+ + + +M+D T SRGFGF
Sbjct: 4 HDPKE-----REQLRKPFIGGLSFETTDDGLREHFEKWVTLTDCVVMRDPQTKCSRGFGF 58
Query: 232 LTFENASSVDEVV-KTQHILDGKVIDPKRAIPREEQDKTG------KIFVGGI 277
+T+ VD + H +DG V++PKRA+ RE+ K G KIFVGGI
Sbjct: 59 VTYSYIEEVDAAMCAPPHKVDGCVVEPKRAVSREDFVKPGAHLTVKKIFVGGI 111
Score = 50.4 bits (119), Expect = 7e-06
Identities = 28/85 (32%), Positives = 43/85 (49%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E+++ K F+GG+ + E F +W ++ D +M D T SRGFGF+TY +
Sbjct: 7 KEREQLRKPFIGGLSFETTDDGLREHFEKWVTLTDCVVMRDPQTKCSRGFGFVTYSYIEE 66
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD + G +E KRA R
Sbjct: 67 VDAAMCAPPHKVDGCVVEPKRAVSR 91
>Hs18550462 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 86.3 bits (212), Expect = 1e-16
Identities = 38/87 (43%), Positives = 62/87 (70%), Gaps = 1/87 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIG L++ETT+E L+ +F ++G + + +M+D T RSRGFGF+T A VD V+
Sbjct: 85 LRKLFIGWLSFETTDESLKSHFEQWGTLTDCAVMRDPNTKRSRGFGFVTHATAEEVDAVM 144
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG 270
T+ H +DG+V++PKR + RE+ ++G
Sbjct: 145 NTRPHKVDGRVVEPKRPVSREDYQRSG 171
Score = 61.2 bits (147), Expect = 4e-09
Identities = 29/91 (31%), Positives = 49/91 (52%)
Query: 258 KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFIT 317
K + + + K+F+G + + + + F QWG++ D +M D +T RSRGFGF+T
Sbjct: 74 KNYTEKTQPEHLRKLFIGWLSFETTDESLKSHFEQWGTLTDCAVMRDPNTKRSRGFGFVT 133
Query: 318 YDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ T + VD V + + G+ +E KR R
Sbjct: 134 HATAEEVDAVMNTRPHKVDGRVVEPKRPVSR 164
>Hs20480107 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 249
Score = 85.1 bits (209), Expect = 3e-16
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
Query: 248 HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
H +DG+V++PKRA+ RE+ + G KIFVGGI D ++F Q+G I ++
Sbjct: 6 HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 65
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
M D+ +G+ RGF F+T+D D+VD++ K+ G E+ +A
Sbjct: 66 MSDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVTKA 109
Score = 72.4 bits (176), Expect = 2e-12
Identities = 31/82 (37%), Positives = 55/82 (66%), Gaps = 1/82 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF++ SVD+ V
Sbjct: 33 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMSDRGSGKKRGFAFVTFDDHDSVDKIV 92
Query: 244 VKTQHILDGKVIDPKRAIPREE 265
++ H ++G + +A+ ++E
Sbjct: 93 IQKYHTVNGHNCEVTKALSKQE 114
>At5g50250 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 84.7 bits (208), Expect = 3e-16
Identities = 50/173 (28%), Positives = 89/173 (50%), Gaps = 11/173 (6%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK- 245
K+F+G L ++ + L F + G V +++ + T +SRGFGF+T ++ V+
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 246 -TQHILDGKVIDPKRAIPREEQ--------DKTGKIFVGGIGPDVRPKEFEEFFSQWGSI 296
++G+ + RA PR + D +I+VG + DV E FS+ G +
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 297 IDAQLMLDKDTGRSRGFGFITYDTPDAVD-RVCQNKFIEFKGKQIEIKRAEPR 348
+DA+++ D++TGRSRGFGF+ + V+ + +G+ I++ AE R
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 54.7 bits (130), Expect = 4e-07
Identities = 28/86 (32%), Positives = 50/86 (57%), Gaps = 3/86 (3%)
Query: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV 324
E + K+FVG + DV + F Q G++ ++++ ++DT +SRGFGF+T T +
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 325 DRVCQ--NKFIEFKGKQIEIKRAEPR 348
++ + N F E G+++ + RA PR
Sbjct: 168 EKAVEKFNSF-EVNGRRLTVNRAAPR 192
>At2g18510 [A] KOG0131 Splicing factor 3b subunit 4
Length = 363
Score = 84.7 bits (208), Expect = 3e-16
Identities = 52/163 (31%), Positives = 89/163 (53%), Gaps = 5/163 (3%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++GGL+ + +EE L + F + G V V + KD T + +GF+ + + D +K
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 248 HI--LDGKVIDPKRAI-PREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSII-DAQLML 303
++ L GK I +A ++ D +F+G + PDV K + FS +G I + ++M
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMR 146
Query: 304 DKDTGRSRGFGFITYDTPDAVDRVCQNKFIEF-KGKQIEIKRA 345
D DTG SRGFGFI+YD+ +A D ++ ++ +QI + A
Sbjct: 147 DPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>Hs22041301 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 209
Score = 82.8 bits (203), Expect = 1e-15
Identities = 43/164 (26%), Positives = 79/164 (47%), Gaps = 37/164 (22%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
+++ K+F GL++ETT++ LR +F ++G + +M+D+ T S GFGF+T+ VD
Sbjct: 11 KELGKLFFEGLSFETTDKSLRSHFEQWGTPTDCVVMRDSNTKHSGGFGFITYATVEEVDV 70
Query: 243 VVKTQ-HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
+ +DG++++P RA+ RE+ + G
Sbjct: 71 AKNAKPRNVDGRLVEPNRAVSREDSQRPG------------------------------- 99
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
+G+ RGF F+T+D D+VD++ K+ E ++A
Sbjct: 100 -----SGKKRGFAFVTFDNHDSVDKIVIQKYHTVNDHNCEARKA 138
Score = 56.6 bits (135), Expect = 1e-07
Identities = 31/85 (36%), Positives = 42/85 (48%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E + GK+F G+ + K F QWG+ D +M D +T S GFGFITY T +
Sbjct: 8 KEPKELGKLFFEGLSFETTDKSLRSHFEQWGTPTDCVVMRDSNTKHSGGFGFITYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIKRAEPR 348
VD K G+ +E RA R
Sbjct: 68 VDVAKNAKPRNVDGRLVEPNRAVSR 92
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 82.4 bits (202), Expect = 2e-15
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 172 HEPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
H + + D+ R + + L T++ LR FS G V K+++D G S G+GF
Sbjct: 8 HMAEDCRGDIGR--TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 232 LTFENASSVDEVVKTQH--ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEF 289
+ + A + + T + L K I A P E K +++ G+ + K+ E+
Sbjct: 66 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDM 125
Query: 290 FSQWGSIIDAQLMLDKDTGRSRGFGFITYD 319
FS++G II++++++D+ TG SRG FI +D
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155
>At3g56860 [R] KOG0118 FOG: RRM domain
Length = 478
Score = 81.3 bits (199), Expect = 4e-15
Identities = 49/182 (26%), Positives = 85/182 (45%), Gaps = 25/182 (13%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+ GL W+T E L + F +YG + + K + D +G+S+G+GF+ +++ S +K
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 247 QH-----------------------ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRP 283
I V P + E K KI+V +G ++ P
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQK--KIYVSNVGAELDP 258
Query: 284 KEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIK 343
++ FFS++G I + L LDK TGR +GF Y + ++ R + F+G + +
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQ 318
Query: 344 RA 345
+A
Sbjct: 319 KA 320
>At3g15010 [R] KOG0118 FOG: RRM domain
Length = 404
Score = 80.9 bits (198), Expect = 5e-15
Identities = 54/181 (29%), Positives = 80/181 (43%), Gaps = 8/181 (4%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFL 232
E + AD K+FI GL +TT EGLR FS YG + E ++ D TG+S+G+GF+
Sbjct: 62 ESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFV 121
Query: 233 TFENASSVDEVVK-TQHILDGKVIDPKRAIPREE-------QDKTGKIFVGGIGPDVRPK 284
TF + +K +DG+V + A + KI+V + D+
Sbjct: 122 TFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPAD 181
Query: 285 EFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKR 344
F +G + + L DK TG+SRGF Y T + + GK + K
Sbjct: 182 RLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKL 241
Query: 345 A 345
A
Sbjct: 242 A 242
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 80.5 bits (197), Expect = 6e-15
Identities = 44/150 (29%), Positives = 78/150 (51%), Gaps = 4/150 (2%)
Query: 174 PKAIKADLSRDINK--MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
P ++ + D +K + + L T+E R F G + K+++D TG+S G+GF
Sbjct: 32 PSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 91
Query: 232 LTFENASSVDEVVKTQH--ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEF 289
+ + + ++ + T + L K I A P + ++V G+ + KE E+
Sbjct: 92 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 151
Query: 290 FSQWGSIIDAQLMLDKDTGRSRGFGFITYD 319
FSQ+G II +++++D+ TG SRG GFI +D
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 80.1 bits (196), Expect = 8e-15
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+ + L T+E L+ F G + K+++D TG+S G+GF+ + + ++ + T
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 248 H--ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDK 305
+ L K I A P + ++V G+ + KE E+ FSQ+G II +++++D+
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 160
Query: 306 DTGRSRGFGFITYD 319
TG SRG GFI +D
Sbjct: 161 VTGISRGVGFIRFD 174
>Hs17435738 [R] KOG0118 FOG: RRM domain
Length = 124
Score = 80.1 bits (196), Expect = 8e-15
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 9/121 (7%)
Query: 217 IMKDTATGRSRGFGFLTFENASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTG------ 270
+M+D T SRGFGF+T+ + +I +V+ PKRA+ RE+ + G
Sbjct: 7 VMRDQNTKCSRGFGFVTWRRWM---QPWMQGYIKWMRVVKPKRAVSREDSQRPGAYLTVK 63
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
KIFVGGI D ++F Q+G I ++M D+ +G+ RGF F+T+D D+VD+
Sbjct: 64 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDNHDSVDKTVIQ 123
Query: 331 K 331
K
Sbjct: 124 K 124
Score = 68.2 bits (165), Expect = 3e-11
Identities = 28/60 (46%), Positives = 42/60 (69%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+F+GG+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF+N SVD+ V
Sbjct: 62 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDNHDSVDKTV 121
>Hs4503553 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 79.7 bits (195), Expect = 1e-14
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+ + L T++ + F G + K+++D TGR G+GF+ + + + D+ + T
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGRDLGYGFVNYPDPNDADKAINTL 100
Query: 248 H--ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDK 305
+ L K I A P + ++V G+ + KE E+ FSQ+G II +++++D+
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQ 160
Query: 306 DTGRSRGFGFITYD 319
TG SRG GFI +D
Sbjct: 161 VTGVSRGVGFIRFD 174
>At4g16280 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 747
Score = 79.3 bits (194), Expect = 1e-14
Identities = 51/173 (29%), Positives = 87/173 (49%), Gaps = 12/173 (6%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+G + TEE +R YF ++G V EV ++KD TG+ +G F+ + + D ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 247 QH---ILDGKVIDPKRAIPREEQDKTG----KIFVGGIGPDVRPKEFEEFFSQWGSIIDA 299
H L G + E+++ G K+FVG + KE EE F Q+G + D
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 240
Query: 300 QLMLDKDTGRSRGFGFITYDTPD----AVDRVCQNKFIEFKGKQIEIKRAEPR 348
LM D + +SRG GF+ Y + + A+D + + + + ++ AEP+
Sbjct: 241 YLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPK 292
>At3g26420 [R] KOG0118 FOG: RRM domain
Length = 245
Score = 77.4 bits (189), Expect = 5e-14
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
+ FIGGL W T++ GLRD F KYG + E K++ D +GRSRGFGF+TF+ ++DE +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 247 QH--ILDGKVIDPKRAIPRE 264
+ LDG+ I +A P +
Sbjct: 68 MNGMDLDGRTITVDKAQPHQ 87
Score = 60.5 bits (145), Expect = 7e-09
Identities = 27/83 (32%), Positives = 51/83 (60%), Gaps = 1/83 (1%)
Query: 266 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVD 325
+D + F+GG+ + + F ++G +++A+++LDK +GRSRGFGFIT+D A+D
Sbjct: 3 EDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMD 62
Query: 326 R-VCQNKFIEFKGKQIEIKRAEP 347
+ ++ G+ I + +A+P
Sbjct: 63 EAIAAMNGMDLDGRTITVDKAQP 85
>Hs17462157 [R] KOG0118 FOG: RRM domain
Length = 163
Score = 77.0 bits (188), Expect = 7e-14
Identities = 45/162 (27%), Positives = 77/162 (46%), Gaps = 43/162 (26%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIG L++ET +E LR +F ++G + + +M+D T SRGFGF+T+ VD +
Sbjct: 41 LRKLFIGELSFETADESLRSHFEQWGMLMDCVVMRDPNTKCSRGFGFVTYATVEEVDAAM 100
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ H +DG+V++PK + R FS
Sbjct: 101 NARPHKVDGRVVEPKSDLKRR-------------------------FS------------ 123
Query: 304 DKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRA 345
++RGF F+T+D D++D+ K+ G E+++A
Sbjct: 124 -----KNRGFAFVTFDDHDSMDKTVIQKYHTVNGHNCEVRKA 160
Score = 55.8 bits (133), Expect = 2e-07
Identities = 26/80 (32%), Positives = 44/80 (54%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+G + + + F QWG ++D +M D +T SRGFGF+TY T +
Sbjct: 36 KEPEQLRKLFIGELSFETADESLRSHFEQWGMLMDCVVMRDPNTKCSRGFGFVTYATVEE 95
Query: 324 VDRVCQNKFIEFKGKQIEIK 343
VD + + G+ +E K
Sbjct: 96 VDAAMNARPHKVDGRVVEPK 115
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 77.0 bits (188), Expect = 7e-14
Identities = 44/152 (28%), Positives = 71/152 (45%), Gaps = 2/152 (1%)
Query: 176 AIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFE 235
A D+ + I L T+E +R F+ G + K+++D TG+S G+GF+ +
Sbjct: 32 APNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYV 91
Query: 236 NASSVDEVVKTQH--ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQW 293
V + + L K I A P +Q K ++V GI + E E F +
Sbjct: 92 REEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPF 151
Query: 294 GSIIDAQLMLDKDTGRSRGFGFITYDTPDAVD 325
G II ++++ D TG S+G GF+ +D D D
Sbjct: 152 GQIITSRILSDNVTGLSKGVGFVRFDKKDEAD 183
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 76.6 bits (187), Expect = 9e-14
Identities = 45/142 (31%), Positives = 77/142 (53%), Gaps = 4/142 (2%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++GGL+ + +E L + F + G V + KD TG+ +G+GF+ F + D +K
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 248 HI--LDGKVIDPKRAIPREEQ-DKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDA-QLML 303
++ L GK I +A + D IF+G + P++ K + FS +G I+ ++M
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 304 DKDTGRSRGFGFITYDTPDAVD 325
D DTG S+G+ FI + + DA D
Sbjct: 135 DPDTGNSKGYAFINFASFDASD 156
>Hs22044914 [R] KOG0118 FOG: RRM domain
Length = 357
Score = 75.9 bits (185), Expect = 2e-13
Identities = 36/106 (33%), Positives = 59/106 (54%), Gaps = 6/106 (5%)
Query: 248 HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
H +DG+V++PKRA+ RE+ + G KIFVGGI D + Q+ I ++
Sbjct: 6 HKVDGRVVEPKRAVSREDSQRPGARLTVKKIFVGGIKEDTEEHHLRNYSEQYRKIEVIEI 65
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEP 347
D+ + + RGF F+T+D D+VD++ K+ G E+++A P
Sbjct: 66 TTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHSVNGHNYEVRKALP 111
Score = 58.9 bits (141), Expect = 2e-08
Identities = 26/81 (32%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE-V 243
+ K+F+GG+ +T E LR+Y +Y + ++I D + + RGF F+TF++ SVD+ V
Sbjct: 33 VKKIFVGGIKEDTEEHHLRNYSEQYRKIEVIEITTDRGSVKKRGFAFVTFDDHDSVDKIV 92
Query: 244 VKTQHILDGKVIDPKRAIPRE 264
++ H ++G + ++A+P +
Sbjct: 93 IQKYHSVNGHNYEVRKALPNK 113
>At5g04280 [R] KOG0118 FOG: RRM domain
Length = 310
Score = 75.9 bits (185), Expect = 2e-13
Identities = 36/79 (45%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR-VCQ 329
+IFVGG+ P+V ++ E FS++G I+D Q+ML++DTGRSRGFGFIT+ A+D + +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 330 NKFIEFKGKQIEIKRAEPR 348
+F + I + RAEP+
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 66.6 bits (161), Expect = 9e-11
Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
+++ +++F+GGL+ E T+ L FS++G + + +IM + TGRSRGFGF+TF + ++D
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 242 EVVKTQHILD--GKVIDPKRAIPREEQD 267
E ++ H D +VI RA P+ +D
Sbjct: 63 ESIREMHGRDFGDRVISVNRAEPKLGRD 90
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 75.9 bits (185), Expect = 2e-13
Identities = 48/179 (26%), Positives = 88/179 (48%), Gaps = 32/179 (17%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++ L TT++ L++ F +YG + +MKD G+S+GFGF+ FENA D+ +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENA---DDAARAV 272
Query: 248 HILDGKVIDPK-----RAIPREEQD------------------KTGKIFVGGIGPDVRPK 284
L+G D K RA + E++ ++ ++V + P + +
Sbjct: 273 ESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDE 332
Query: 285 EFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIK 343
+ +E FS +G++ +++M D + G S+G GF+ + TP+ + GK IE K
Sbjct: 333 KLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS----QLSGKMIESK 386
Score = 69.3 bits (168), Expect = 1e-11
Identities = 37/146 (25%), Positives = 73/146 (49%), Gaps = 5/146 (3%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L++ T+ L D F + G V V++ +D T RS G+G++ F N ++
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 248 HI--LDGKVIDP--KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ L GK I P + G IF+ + + K + FS +G+I+ ++ +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAV 157
Query: 304 DKDTGRSRGFGFITYDTPDAVDRVCQ 329
D +G+S+G+GF+ Y ++ + +
Sbjct: 158 D-SSGQSKGYGFVQYANEESAQKAIE 182
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 75.5 bits (184), Expect = 2e-13
Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 13/172 (7%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+FI L+ + + L D FS +G + KI D G+S+GFGF+ FE + E +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 248 H--ILDGKVIDPKRAIPREEQDKT--------GKIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ +L+G+ I + R+E+D ++V I + ++F+E F+++G I+
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 298 DAQLMLDKDTGRSRGFGFITYDT-PDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
A L D D G+ +GFGF+ Y+ DAV V E G+++ + RA+ +
Sbjct: 247 SASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 297
Score = 69.3 bits (168), Expect = 1e-11
Identities = 44/164 (26%), Positives = 83/164 (49%), Gaps = 22/164 (13%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK-- 245
+++ +N ETT+E ++ F+K+G + + KD A G+ +GFGF+ +E + V+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 246 TQHILDGKVIDPKRAIPREEQ-------------DKTGK-----IFVGGIGPDVRPKEFE 287
L+G+ + RA + E+ +K K +FV + V ++ E
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNK 331
E F+ +G+I A++M + G+S+GFGF+ + TP+ + K
Sbjct: 340 EEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 382
Score = 63.2 bits (152), Expect = 1e-09
Identities = 35/140 (25%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L +E L D FS G+V+ +++ +D T S G+ ++ F + + + ++
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 248 HI--LDGKV--IDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ + G++ I + P + +G IF+ + PD+ K + FS +G I+ +++
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIAT 159
Query: 304 DKDTGRSRGFGFITYDTPDA 323
D + G+S+GFGF+ ++ A
Sbjct: 160 D-ENGKSKGFGFVHFEEEGA 178
>Hs4502847 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 75.5 bits (184), Expect = 2e-13
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 181 LSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV 240
++ D K+F+GGL+++T E+ L FSKYG ++EV ++KD T RSRGFGF+TFEN +
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN---I 57
Query: 241 DEVVKTQHILDGKVIDPKR 259
D+ ++GK +D ++
Sbjct: 58 DDAKDAMMAMNGKSVDGRQ 76
Score = 59.7 bits (143), Expect = 1e-08
Identities = 29/77 (37%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
Query: 270 GKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDT-PDAVDRVC 328
GK+FVGG+ D + E+ FS++G I + ++ D++T RSRGFGF+T++ DA D +
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 329 QNKFIEFKGKQIEIKRA 345
G+QI + +A
Sbjct: 66 AMNGKSVDGRQIRVDQA 82
>At3g52380 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 75.1 bits (183), Expect = 3e-13
Identities = 46/190 (24%), Positives = 92/190 (48%), Gaps = 26/190 (13%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
S + ++++G L + T L F + G V +V+I+ D T RSRGFGF+T S++
Sbjct: 112 SGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM---GSIE 168
Query: 242 EVVKTQHILDGKVIDPKRA------IPREEQ----------------DKTGKIFVGGIGP 279
E + + + I + +PR + D K++ G +G
Sbjct: 169 EAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGW 228
Query: 280 DVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV-DRVCQNKFIEFKGK 338
++ + ++ F ++ A+++ +++TGRSRGFGFI++++ + V + +E +G+
Sbjct: 229 NLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 288
Query: 339 QIEIKRAEPR 348
+ + A R
Sbjct: 289 ALRLNLASER 298
Score = 59.3 bits (142), Expect = 2e-08
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
+K++ G L W T +GL+D F V K++ + TGRSRGFGF++FE+A +V +
Sbjct: 219 HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Query: 246 TQH--ILDGKVIDPKRAIPREE 265
T + ++G+ + A RE+
Sbjct: 279 TMNGVEVEGRALRLNLASEREK 300
Score = 50.8 bits (120), Expect = 5e-06
Identities = 29/101 (28%), Positives = 55/101 (53%), Gaps = 8/101 (7%)
Query: 225 RSRGFGFLTFENASSVDEV---VKTQHILDGKVIDPKRAIPREEQD-----KTGKIFVGG 276
R R F E +S+ DE+ V+ + ++ + + + + E+Q + G+++VG
Sbjct: 63 RHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGN 122
Query: 277 IGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFIT 317
+ + E + F + G+++D Q++ DK T RSRGFGF+T
Sbjct: 123 LPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVT 163
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 75.1 bits (183), Expect = 3e-13
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 17/165 (10%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK-- 245
+++G L++ T+ L DYF++ V V++ +D AT S G+G++ + N ++ ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 246 TQHILDGKVIDPKRAIPREEQDKT------GKIFVGGIGPDVRPKEFEEFFSQWGSIIDA 299
L+GK+I I +D + G +FV + V K E FS G+I+
Sbjct: 108 NYSYLNGKMI----RITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 300 QLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKR 344
++ D G+SRG+GF+ +DT D+ +N + GK + K+
Sbjct: 164 KVATD-HMGQSRGYGFVQFDTEDS----AKNAIEKLNGKVLNDKQ 203
Score = 66.2 bits (160), Expect = 1e-10
Identities = 43/156 (27%), Positives = 77/156 (48%), Gaps = 16/156 (10%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ +F+ L+ + L + FS G + K+ D G+SRG+GF+ F+ S +
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAI 191
Query: 245 KTQHILDGKVIDPKRA-----IPREEQD------KTGKIFVGGIGPDVRPKEFEEFFSQW 293
+ L+GKV++ K+ + +EE++ K ++V + E + F Q+
Sbjct: 192 EK---LNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQY 248
Query: 294 GSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQ 329
GSI A +M D D G+SR FGF+ ++ P+ R +
Sbjct: 249 GSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVE 283
Score = 64.3 bits (155), Expect = 5e-10
Identities = 47/191 (24%), Positives = 87/191 (44%), Gaps = 33/191 (17%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFL 232
E + AD + N +++ L+ TT++ L+ F +YG+++ +M+D G+SR FGF+
Sbjct: 213 EERESAADKMKFTN-VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFV 270
Query: 233 TFENASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTGK--------------------- 271
FEN ++ + L+GK D K + Q K+ +
Sbjct: 271 NFENP---EDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDG 327
Query: 272 --IFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQ 329
++V + V ++ E F+++G+I ++M D +G S+G GF+ + RV
Sbjct: 328 LNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLN 386
Query: 330 NKFIEFKGKQI 340
E GK +
Sbjct: 387 ----EMNGKMV 393
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 75.1 bits (183), Expect = 3e-13
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENA----SSV 240
+ +FI L+ + + D FS +G + K+ D G S+G+GF+ FE +S+
Sbjct: 89 VGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSI 147
Query: 241 DEVVKTQHILDGKVIDPKRAIPREEQDKT--------GKIFVGGIGPDVRPKEFEEFFSQ 292
D+V +L+GK + + IPR+E++K ++V D ++ +EFF
Sbjct: 148 DKV--NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEP 205
Query: 293 WGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQ--NKFIEFKGKQIEIKRAEPR 348
+G I ++M K+ G+S+GFGF+ ++T +A + Q N +GK + + RA+ +
Sbjct: 206 YGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262
Score = 66.6 bits (161), Expect = 9e-11
Identities = 39/166 (23%), Positives = 84/166 (50%), Gaps = 6/166 (3%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L + E GL D FS G V +++ +D T RS G+ ++ F+ + + + T
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 248 H--ILDGKVIDP--KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ ++ K I + P + G +F+ + + K + FS +G+I+ ++
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT 123
Query: 304 DKDTGRSRGFGFITYDTPDAVD-RVCQNKFIEFKGKQIEIKRAEPR 348
D + G S+G+GF+ ++T +A + + + + GK++ + + PR
Sbjct: 124 D-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPR 168
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/153 (24%), Positives = 73/153 (46%), Gaps = 23/153 (15%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++ + +E L+++F YG + K+M G+S+GFGF+ FE + + V+
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKE-DGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 248 HILD---GKVIDPKRAIPREEQDKTGK------------------IFVGGIGPDVRPKEF 286
+ D GK + RA + E+ + K ++V + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 287 EEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYD 319
FS +G+I A++M D++ GRS+GFGF+ ++
Sbjct: 304 RIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFN 335
>Hs20537556_2 [R] KOG0118 FOG: RRM domain
Length = 122
Score = 75.1 bits (183), Expect = 3e-13
Identities = 38/101 (37%), Positives = 60/101 (58%), Gaps = 7/101 (6%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
++F GG ++ETT+E LR + ++G + +M+D T SRGFGF+T+ VD +
Sbjct: 5 QLFTGGSSFETTDERLRSHSEQWGMLTGCVVMRDPNTKCSRGFGFVTYATVEEVDAAMNA 64
Query: 247 Q-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPD 280
+ H +DG+ ++PKRA+ RE + G K+FV GI D
Sbjct: 65 RPHKVDGRAVEPKRAVSREGSQRPGAHLTVKKVFVAGIKED 105
Score = 50.8 bits (120), Expect = 5e-06
Identities = 26/78 (33%), Positives = 39/78 (49%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
++F GG + + QWG + +M D +T SRGFGF+TY T + VD
Sbjct: 5 QLFTGGSSFETTDERLRSHSEQWGMLTGCVVMRDPNTKCSRGFGFVTYATVEEVDAAMNA 64
Query: 331 KFIEFKGKQIEIKRAEPR 348
+ + G+ +E KRA R
Sbjct: 65 RPHKVDGRAVEPKRAVSR 82
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 74.7 bits (182), Expect = 3e-13
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++GGL+ + +E L + + G V V + KD T +GFGF+ F D +K
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84
Query: 248 HI--LDGKVIDPKRAIPREE-QDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDA-QLML 303
++ L GK I +A E+ D IFVG + P+V K + FS +G I+ ++M
Sbjct: 85 NMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMR 144
Query: 304 DKDTGRSRGFGFITYDTPDAVD 325
D D+G S+GF FI + + +A D
Sbjct: 145 DVDSGTSKGFAFINFASFEASD 166
>Hs22044532 [R] KOG0118 FOG: RRM domain
Length = 138
Score = 74.3 bits (181), Expect = 5e-13
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FI GL++ETT E LR +F ++G + +M+D T RSRG GF+T VD +
Sbjct: 13 LRKLFIEGLSFETTNESLRGHFEQHGMLTGCVVMRDPNTKRSRGCGFVTCATVEEVDAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG-----KIFVGGIGPDVRPKEFEEFFSQWGSIID 298
+ H +DG+V++ K A+ + Q KIFVGG D ++ Q G
Sbjct: 73 NARPHKVDGRVVETKTAVSGDSQRPGAHLTMKKIFVGGFKEDTEEHHPRDYPEQCGKNEV 132
Query: 299 AQLMLD 304
++M D
Sbjct: 133 IEIMTD 138
>Hs22046858 [R] KOG0118 FOG: RRM domain
Length = 318
Score = 73.6 bits (179), Expect = 8e-13
Identities = 39/151 (25%), Positives = 72/151 (46%), Gaps = 28/151 (18%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
+ + K+ I L +ETT+E +R +F ++G + + +++D T SRGFGF T+ A
Sbjct: 62 AEQLQKLSIKELGFETTDECMRSHFEQWGTLTDCAVVRDPNTKHSRGFGFDTYATA---- 117
Query: 242 EVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
+++ + + G D ++F Q+G I ++
Sbjct: 118 ------------------------EEEWMQSCMQGTQEDTEEHHLRDYFEQYGEIEVIEI 153
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKF 332
M D+ +G RGF F+T+D D+VD++ K+
Sbjct: 154 MTDRSSGNKRGFAFVTFDDHDSVDKIVIQKY 184
>Hs22047249 [R] KOG0118 FOG: RRM domain
Length = 174
Score = 73.2 bits (178), Expect = 1e-12
Identities = 39/122 (31%), Positives = 62/122 (49%), Gaps = 7/122 (5%)
Query: 227 RGFGFLTFENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDKT------GKIFVGGIGP 279
R F + A VD + H +DG+ ++PKRA+ RE+ ++ KIFVGGI
Sbjct: 20 REFWVCHYAAAEEVDAATNARPHKVDGRAVEPKRAVSREDSQRSVAHLAVKKIFVGGIKE 79
Query: 280 DVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQ 339
D ++F Q+G I ++ + +G+ RGF F+T D D+VD++ K+ G
Sbjct: 80 DTEEHHLRDYFEQFGKIEVTEITTGRGSGKKRGFAFVTLDDHDSVDKLVIQKYPTVNGHS 139
Query: 340 IE 341
E
Sbjct: 140 CE 141
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/60 (38%), Positives = 39/60 (64%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+F+GG+ +T E LRDYF ++G + +I +G+ RGF F+T ++ SVD++V
Sbjct: 69 VKKIFVGGIKEDTEEHHLRDYFEQFGKIEVTEITTGRGSGKKRGFAFVTLDDHDSVDKLV 128
>Hs18553597 [R] KOG0118 FOG: RRM domain
Length = 300
Score = 73.2 bits (178), Expect = 1e-12
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 9/111 (8%)
Query: 193 LNWETTEEGLRDYFSKYGAVAEVK--IMKDTATGRSRGFGFLTFENASSVDEVVKTQ-HI 249
L++ETT+E L+ ++G + +++D T SRGFGF+T+ VD + + H
Sbjct: 188 LSFETTDETLKSRSEQWGQLPHTNCVVIRDPNTKHSRGFGFVTYALMEEVDAAMNARPHK 247
Query: 250 LDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWG 294
DG+V++PKRA+ RE+ + G KIFVGGI D ++F ++G
Sbjct: 248 EDGRVVEPKRAVSREDSQRLGAHLTLKKIFVGGIKEDTEEHHLRDYFEEYG 298
>Hs17446941 [R] KOG0118 FOG: RRM domain
Length = 192
Score = 72.8 bits (177), Expect = 1e-12
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 10/117 (8%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K++I GL++ETT+E L +F ++G + + T SRGFGF+T V+ +
Sbjct: 69 VRKLYIRGLSFETTDESLMGHFEQWG---RLTLTDYPNTNSSRGFGFVTNATVEEVEAAM 125
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVRPKEFEEFFSQWG 294
+ H ++G+V+ PKRA+ RE+ + G K+FVGGI D + F Q+G
Sbjct: 126 NARPHKVNGRVVKPKRAVSREDSQRAGVHLTVKKVFVGGIKEDTEEHHQRDDFRQFG 182
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 72.4 bits (176), Expect = 2e-12
Identities = 41/161 (25%), Positives = 87/161 (53%), Gaps = 23/161 (14%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
+++ ++I E +E L++ FS++G VK+M+D G+S+GFGF+++E +
Sbjct: 187 AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDAN 245
Query: 242 EVVKTQH--ILDGKVI-------------DPKRAIPREEQDKTGK-----IFVGGIGPDV 281
+ V+ + + GK+I + KR + +Q++ + +++ + +
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 305
Query: 282 RPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
++ + FS +GSI A++ML + GRS+GFGF+ + +P+
Sbjct: 306 DDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPE 344
Score = 67.4 bits (163), Expect = 6e-11
Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ +FI L+ + L D FS +G + K++ D S+G+ F+ FE + D+ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAI 155
Query: 245 KTQH---ILDGKVIDPKRAIPREEQDKTG-------KIFVGGIGPDVRPKEFEEFFSQWG 294
+ + + D KV + +E + + G +++ G +V + +E FSQ+G
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDT-PDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ ++M D + G+S+GFGF++Y+ DA V + E GK I + RA+ +
Sbjct: 216 KTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 65.5 bits (158), Expect = 2e-10
Identities = 34/146 (23%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ + TE L + FS G V +++ +D T RS G+ ++ F+ + + + T
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 248 H--ILDGKVIDP--KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ ++ GK I + P + G +F+ + + K + FS +G+I+ +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 304 DKDTGRSRGFGFITYDTPDAVDRVCQ 329
D++ S+G+ F+ ++T +A D+ +
Sbjct: 133 DEN--GSKGYAFVHFETQEAADKAIE 156
>Hs20548749 [R] KOG0118 FOG: RRM domain
Length = 291
Score = 72.4 bits (176), Expect = 2e-12
Identities = 37/128 (28%), Positives = 65/128 (49%), Gaps = 16/128 (12%)
Query: 218 MKDTATGRSRGFGFLTFENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDKTGKIFVGG 276
M+D T +RGFGF+ + VD + H +DG+V++PKRA+ RE+ +
Sbjct: 1 MRDPNTKHARGFGFVIYATVEEVDAATNARPHKVDGRVVEPKRAVSREDSQRP------- 53
Query: 277 IGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFK 336
E + Q+G + ++ D+ +G+ RGF FIT+D D+VD++ K+
Sbjct: 54 --------EIIGYLEQYGKMEVIEITTDRGSGKKRGFAFITFDDYDSVDKIVIQKYHNVN 105
Query: 337 GKQIEIKR 344
E+++
Sbjct: 106 VHNCEVRK 113
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 71.2 bits (173), Expect = 4e-12
Identities = 45/189 (23%), Positives = 87/189 (45%), Gaps = 22/189 (11%)
Query: 182 SRDINK---MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENAS 238
S+D N+ +F+G L+W ++ L F +YG + +++ D +GRS+G+G++ FE
Sbjct: 256 SQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
Query: 239 SVDEVVKTQHI--LDGKVI-----DPKRAIPRE-EQDKTGK-----------IFVGGIGP 279
+ V +DG+++ +P+ A P+ Q + G +FVG +
Sbjct: 316 AAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSF 375
Query: 280 DVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQ 339
+ + F G I +L D +GR +GFG++T+ D+ + + G+
Sbjct: 376 NATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRP 435
Query: 340 IEIKRAEPR 348
+ + PR
Sbjct: 436 CRLDFSTPR 444
Score = 57.4 bits (137), Expect = 6e-08
Identities = 25/88 (28%), Positives = 54/88 (60%), Gaps = 1/88 (1%)
Query: 262 PREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTP 321
P ++ ++T +FVG + +V + + F ++G+I+ A++++D +GRS+G+G++ ++TP
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 322 DAVD-RVCQNKFIEFKGKQIEIKRAEPR 348
+A V N E G+ + + + PR
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPR 342
>7297935 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 1112
Score = 71.2 bits (173), Expect = 4e-12
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF---ENASSVDEV 243
KMF+G + E LR+ F +YGAV + +++D ATG S+G F+TF A +
Sbjct: 358 KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDA 417
Query: 244 VKTQHILDGKVIDPKRAIPREEQDKT-GKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLM 302
+ L+G + P + P + +++ K+FVG + + + + F G+I + ++
Sbjct: 418 LHNVKTLNGVMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHGAIEECTVL 477
Query: 303 LDKDTGRSRGFGFITYDTPDAV-----DRVCQNKFIEFKGKQIEIKRAE 346
D++ G+S+G F+T+ T A + QNK +E + +K A+
Sbjct: 478 RDQN-GQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 525
Score = 59.7 bits (143), Expect = 1e-08
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+FI L E T+ L F +G V K+ D T S+ FGF++F+N S +K
Sbjct: 745 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 804
Query: 248 HILDGKVIDPKRAIPREEQDKTG--KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDK 305
+ ++++ ++Q K+FVG I + F Q+G + ++ DK
Sbjct: 805 NGFQMELMESTSPDSIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDK 864
Query: 306 DTGRSRGFGFITYDTPDAVDR 326
T SRG F+TY T A R
Sbjct: 865 VTSISRGCCFVTYYTRKAALR 885
>Hs5803137 [R] KOG0118 FOG: RRM domain
Length = 157
Score = 70.9 bits (172), Expect = 5e-12
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 181 LSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV 240
+S + K+F+GGLN+ T E+ L D+FS +G ++EV ++KD T RSRGFGF+TF N
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 241 DEVVKTQH--ILDGKVI 255
++ + LDG+ I
Sbjct: 61 SVAMRAMNGESLDGRQI 77
Score = 53.5 bits (127), Expect = 8e-07
Identities = 28/79 (35%), Positives = 46/79 (57%), Gaps = 5/79 (6%)
Query: 270 GKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVD---R 326
GK+FVGG+ + + E+ FS +G I + ++ D++T RSRGFGFIT+ P+ R
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 327 VCQNKFIEFKGKQIEIKRA 345
+ ++ G+QI + A
Sbjct: 66 AMNGESLD--GRQIRVDHA 82
>At3g19130 [R] KOG0118 FOG: RRM domain
Length = 435
Score = 70.9 bits (172), Expect = 5e-12
Identities = 60/241 (24%), Positives = 105/241 (42%), Gaps = 41/241 (17%)
Query: 175 KAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF 234
KAI D+ +++G L E L FS G V+ VK++++ T +S G+GF+ F
Sbjct: 97 KAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
Query: 235 ENASSVDEVVKTQHILDGKVI----------------DPKRAIPREEQDKTGKIFVGGIG 278
+ ++ +EV++ G V+ KRA+ E +FVG +
Sbjct: 157 LSRAAAEEVLQN---YSGSVMPNSDQPFRINWASFSTGEKRAV---ENGPDLSVFVGDLS 210
Query: 279 PDVRPKEFEEFFS-QWGSIIDAQLMLDKDTGRSRGFGFITY-DTPDAVDRVCQNKFIEFK 336
PDV E FS ++ S+ A++++D +TGRS+G+GF+ + D + + +
Sbjct: 211 PDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCS 270
Query: 337 GKQIEIKRAEPRXXXXXXXXXXXXXXXXNMSNPMQQYQMFQNPMMAGGFNPMMATGFNPQ 396
+Q+ + A P+ QQ Q ++AGG + G+ Q
Sbjct: 271 NRQMRVGIATPKRAIAN-----------------QQQHSSQAVILAGGHGSNGSMGYGSQ 313
Query: 397 S 397
S
Sbjct: 314 S 314
Score = 59.7 bits (143), Expect = 1e-08
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 42/176 (23%)
Query: 188 MFIGGLNWETTEEGLRDYFS-KYGAVAEVKIMKDTATGRSRGFGFLTF--ENASS----- 239
+F+G L+ + T+ L + FS +Y +V K++ D+ TGRS+G+GF+ F EN S
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 240 VDEVVKTQHILDGKVIDPKRAIPREEQDKT---------------------------GKI 272
++ + + + PKRAI ++Q + I
Sbjct: 264 MNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATI 323
Query: 273 FVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITY-DTPDAVDRV 327
FVGGI PDV ++ + FSQ+G ++ ++ + K G GF+ + D A D +
Sbjct: 324 FVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK------GCGFVQFADRKSAEDAI 373
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 70.5 bits (171), Expect = 7e-12
Identities = 45/184 (24%), Positives = 91/184 (49%), Gaps = 12/184 (6%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFL 232
+P + S + +++G L+ + E L + FS G V +++ +D AT S G+ ++
Sbjct: 19 QPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYV 78
Query: 233 TFENASSVDEVVKTQHI--LDGKVIDPKRAI-----PREEQDKTGKIFVGGIGPDVRPKE 285
F+ + + + T + L GK P R + P + G IF+ + + K
Sbjct: 79 NFQQPADAERAMDTMNFEALHGK---PMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 286 FEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN-KFIEFKGKQIEIKR 344
+ FS +G+I+ ++ +D+D G S+G+GF+ ++T +A Q + GK++ + +
Sbjct: 136 IYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGK 194
Query: 345 AEPR 348
+PR
Sbjct: 195 FQPR 198
Score = 58.5 bits (140), Expect = 3e-08
Identities = 42/174 (24%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+FI L+ + + D FS +G + K+ D G S+G+GF+ FE + ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 248 H--ILDGKVIDPKRAIPREEQDK----TGK----IFVGGIGPDVRPKEFEEFFSQWGSII 297
+ +L GK + + PR ++++ T K ++V G + E+ F+++G+I
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNIT 240
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQ---NKFIEFKGKQIEIKRAEPR 348
++M + G+S+GFGF+ + P+ + Q + IE ++ + RA+ +
Sbjct: 241 SCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKK 292
Score = 58.5 bits (140), Expect = 3e-08
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 25/165 (15%)
Query: 180 DLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASS 239
+ ++ +++ +E L F+K+G + ++M T G+S+GFGF+ F N
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEE 264
Query: 240 VDEVVKTQHILDGKVIDPKRAIPR--------------EEQDKTGK--------IFVGGI 277
+ V+ H + D K + R EQ K + ++V +
Sbjct: 265 AETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNL 324
Query: 278 GPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
V ++ F +G+I A++M D + GRS+GFGF+ ++ P+
Sbjct: 325 DETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPE 368
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 70.1 bits (170), Expect = 9e-12
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
+K+FIGGL+W E+ L+D FS +G VAEV+I D +GRSRGFGF+ F + + +
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF---AEEGDALS 97
Query: 246 TQHILDGKVI--DPKRAIPREEQDKTGKIFVGGIGPDVRPKE 285
+ +DGK + P R E+ + G + V +G R +E
Sbjct: 98 AKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKSKRERE 139
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 69.3 bits (168), Expect = 1e-11
Identities = 37/140 (26%), Positives = 73/140 (51%), Gaps = 5/140 (3%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ T+ L + F++ G V V++ +D T RS G+G++ + +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 248 HI--LDGKVIDPKRAI--PREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ L+G+ I ++ P + G IF+ + + K E FS +G I+ ++ +
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAV 166
Query: 304 DKDTGRSRGFGFITYDTPDA 323
D +G+S+G+GF+ YDT +A
Sbjct: 167 D-PSGQSKGYGFVQYDTDEA 185
Score = 66.6 bits (161), Expect = 9e-11
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++ L+ ++E L F ++G IM+D G+S+GFGF+ FEN+ D+ +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENS---DDAARAV 281
Query: 248 HILDGKVIDPKRAIPREEQDKT-----------------------GKIFVGGIGPDVRPK 284
L+GK D K + Q K+ ++V + V
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 285 EFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIK 343
+ E F+ +G+I ++M D +G SRG GF+ + TP+ R E GK I K
Sbjct: 342 KLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRA----ITEMNGKMIVTK 395
>Hs20536974 [R] KOG0118 FOG: RRM domain
Length = 135
Score = 68.9 bits (167), Expect = 2e-11
Identities = 32/89 (35%), Positives = 55/89 (60%), Gaps = 1/89 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIG L++ETT+E LR + ++G + + +M+D T SRGFGF+T+ VD +
Sbjct: 13 LQKLFIGELSFETTDESLRSHSEQWGMLMDCVVMRDPNTKCSRGFGFVTYATVEEVDAAM 72
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDKTGKI 272
+ H +DG+V++PK + R + K+
Sbjct: 73 NARPHKVDGRVVEPKSCLKRRFSKTSCKV 101
Score = 52.8 bits (125), Expect = 1e-06
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 264 EEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+E ++ K+F+G + + + QWG ++D +M D +T SRGFGF+TY T +
Sbjct: 8 KEPEQLQKLFIGELSFETTDESLRSHSEQWGMLMDCVVMRDPNTKCSRGFGFVTYATVEE 67
Query: 324 VDRVCQNKFIEFKGKQIEIK 343
VD + + G+ +E K
Sbjct: 68 VDAAMNARPHKVDGRVVEPK 87
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 68.9 bits (167), Expect = 2e-11
Identities = 43/161 (26%), Positives = 83/161 (50%), Gaps = 23/161 (14%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
+++ ++I + +E L+D F K+G VK+M D +G+S+GFGF++FE
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 242 EVVKTQH--ILDGKVI-------------DPKRAIPREEQDKTGK-----IFVGGIGPDV 281
+ V + L+GK I + KR + +QD+ + ++V + +
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGI 305
Query: 282 RPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
+ + FS +G+I A++M+ + GRS+GFGF+ + +P+
Sbjct: 306 DDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPE 344
Score = 64.7 bits (156), Expect = 4e-10
Identities = 40/175 (22%), Positives = 89/175 (50%), Gaps = 14/175 (8%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ +F+ L+ + L D S +G + ++ D S+G+GF+ FE + + +
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAI 155
Query: 245 KTQH--ILDGKVIDPKRAIPREEQD--------KTGKIFVGGIGPDVRPKEFEEFFSQWG 294
K + +L+G+ + + R+E++ + +++ G D+ + ++ F ++G
Sbjct: 156 KKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDT-PDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ ++M D ++G+S+GFGF++++ DA V + E GKQI + RA+ +
Sbjct: 216 PALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 60.8 bits (146), Expect = 5e-09
Identities = 33/143 (23%), Positives = 73/143 (50%), Gaps = 6/143 (4%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ + TE L + FS G + ++I +D T S + ++ F++ + + T
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 248 H--ILDGKVIDP--KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ ++ GK + + P + G IFV + + K + S +G+I+ ++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 304 DKDTGRSRGFGFITYDTPDAVDR 326
D++ S+G+GF+ ++T +A +R
Sbjct: 133 DEN--GSKGYGFVHFETHEAAER 153
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 68.9 bits (167), Expect = 2e-11
Identities = 38/146 (26%), Positives = 79/146 (54%), Gaps = 5/146 (3%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV--K 245
+++G L+ TE L D F+++ ++ V++ KD ++GRS +G+ F + + + K
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 246 TQHILDGKVIDPKRAI--PREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+L+GK+I ++ P ++ G +FV + V ++ F ++G+I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT 145
Query: 304 DKDTGRSRGFGFITYDTPDAVDRVCQ 329
+D G+SRG+GF+ ++ DA Q
Sbjct: 146 LED-GKSRGYGFVQFEQEDAAHAAIQ 170
Score = 63.9 bits (154), Expect = 6e-10
Identities = 47/182 (25%), Positives = 86/182 (46%), Gaps = 23/182 (12%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++ L+ + +E+ LR+ F+++G + + I KD RG+ F+ F+N +T
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261
Query: 248 H--ILDGKVIDPKRAIPREEQD------------------KTGKIFVGGIGPDVRPKEFE 287
+ K + RA + E++ K I+V + V +E
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTP-DAVDRVCQNKFIEFKGKQIEIKRAE 346
+ FSQ G+I +LM D + G+S+GFGF+ + TP +A+D V F GK + + A+
Sbjct: 322 KHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 347 PR 348
+
Sbjct: 381 KK 382
Score = 60.8 bits (146), Expect = 5e-09
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ +F+ L T L+D F K+G + K+ G+SRG+GF+ FE + +
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 245 KT--------QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSI 296
+T + I GK + + EE K +++ + DV E F+++G I
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEE--KYTNLYMKNLDADVSEDLLREKFAEFGKI 227
Query: 297 IDAQLMLDKDTGR-SRGFGFITYDTPDAVDRVCQN-KFIEFKGKQIEIKRAEPR 348
+ L + KD R RG+ F+ +D P+ R + +F K + + RA+ +
Sbjct: 228 V--SLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 68.9 bits (167), Expect = 2e-11
Identities = 38/136 (27%), Positives = 67/136 (48%), Gaps = 7/136 (5%)
Query: 198 TEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQH--ILDGKVI 255
+++ +R F +G V K+++D TG+S G+GF+ + ++ + + L K I
Sbjct: 122 SQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTI 181
Query: 256 DPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDT-----GRS 310
A P E K ++V G+ ++ + E FS +G II ++++ D T G S
Sbjct: 182 KVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLS 241
Query: 311 RGFGFITYDTPDAVDR 326
+G GFI +D DR
Sbjct: 242 KGVGFIRFDQRFEADR 257
>ECU03g0730 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 293
Score = 68.6 bits (166), Expect = 2e-11
Identities = 38/147 (25%), Positives = 74/147 (49%), Gaps = 2/147 (1%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+FI G++++ TE L+ K G VA V I R++GFG++ F V + +K
Sbjct: 89 VFIKGISYDLTEYDLKSEMEKIGKVARVGIPMTNDHKRNKGFGYVEFCKEEDVKKALKLD 148
Query: 248 H-ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKD 306
+ G+ + A PR +++ I+V I + ++ +++F G ++ L D+D
Sbjct: 149 GTVFLGREVVVNMAHPRANKERH-TIYVSNIPYECDKRDLKKYFEGMGEVVGMSLPYDRD 207
Query: 307 TGRSRGFGFITYDTPDAVDRVCQNKFI 333
R +G+GF+ + + +RV + K +
Sbjct: 208 NNRLKGYGFVDFGNKEDYERVLKKKLV 234
>CE12942 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 584
Score = 67.8 bits (164), Expect = 4e-11
Identities = 43/140 (30%), Positives = 73/140 (51%), Gaps = 8/140 (5%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
D KMF+G + + E R F KYG+V I++D +T S+G F+TF + E
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Query: 244 VKTQHILDGKVID----PKRAIPREEQDKT-GKIFVGGIGPDVRPKEFEEFFSQWGSIID 298
H + KVI+ P + P + +++ K+F+G + + E F+++G I D
Sbjct: 113 QGALHNI--KVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIED 170
Query: 299 AQLMLDKDTGRSRGFGFITY 318
++ D+D G+SRG F+T+
Sbjct: 171 CSVLRDQD-GKSRGCAFVTF 189
Score = 52.0 bits (123), Expect = 2e-06
Identities = 30/79 (37%), Positives = 46/79 (57%), Gaps = 3/79 (3%)
Query: 172 HEPKAIK-ADL-SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGF 229
H P +K AD +R+ K+FIG L+ + EE LR+ F+K+G + + +++D G+SRG
Sbjct: 126 HHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGC 184
Query: 230 GFLTFENASSVDEVVKTQH 248
F+TF N S K H
Sbjct: 185 AFVTFTNRSCAVVATKEMH 203
>At4g13850 [R] KOG0118 FOG: RRM domain
Length = 158
Score = 67.8 bits (164), Expect = 4e-11
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+FIGGL+W T + LRD F+ +G V + K++ D TGRSRGFGF+ F + + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 247 QHILDGKVIDPK--RAIPREEQDKTGKIFVGGIG 278
+DGK ++ + R P ++ + + GG G
Sbjct: 96 ---MDGKELNGRHIRVNPANDRPSAPRAYGGGGG 126
Score = 55.1 bits (131), Expect = 3e-07
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITY-DTPDAVDRVCQ 329
K+F+GG+ + F+ +G ++DA++++D++TGRSRGFGF+ + D A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 330 NKFIEFKGKQIEIKRAEPR 348
E G+ I + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>At1g60000 [R] KOG0118 FOG: RRM domain
Length = 258
Score = 67.8 bits (164), Expect = 4e-11
Identities = 44/172 (25%), Positives = 80/172 (45%), Gaps = 15/172 (8%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K++ G L + L + V+++ + TG+SRGF F+T N + ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 247 QHILDG--------KVIDPKRAIPREEQ---DKTGKIFVGGIGPDVRPKEFEEFFSQWGS 295
LDG KV + P +E + K+FVG + V + F + G
Sbjct: 146 ---LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGD 202
Query: 296 IIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN-KFIEFKGKQIEIKRAE 346
++ A+++ D DTGRSRG+GF+ Y + ++ ++ E +G+ I + A+
Sbjct: 203 VVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254
Score = 51.2 bits (121), Expect = 4e-06
Identities = 27/81 (33%), Positives = 47/81 (57%), Gaps = 4/81 (4%)
Query: 173 EPKAIKADLSRDI-NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
+PK K L + +K+F+G L+W T E L F + G V +++ D TGRSRG+GF
Sbjct: 163 KPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGF 222
Query: 232 LTFENASSVDEVVKTQHILDG 252
+ + + + ++ +++ LDG
Sbjct: 223 VCYSSKAEMETALES---LDG 240
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 67.4 bits (163), Expect = 6e-11
Identities = 42/175 (24%), Positives = 89/175 (50%), Gaps = 14/175 (8%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
I +FI L+ + L ++FS +G + K+M D S+G+ F+ F+N S+ D +
Sbjct: 214 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAI 271
Query: 245 KTQH--ILDG--------KVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWG 294
+ + +L G K + A R + + +++ G D+ + ++ FS++G
Sbjct: 272 EEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 331
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN-KFIEFKGKQIEIKRAEPR 348
+ ++M D +G+S+GFGF+++D+ +A + + + G+ I + RA+ +
Sbjct: 332 KTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 385
Score = 64.7 bits (156), Expect = 4e-10
Identities = 40/159 (25%), Positives = 83/159 (52%), Gaps = 23/159 (14%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
+ ++I + +E L+D FSKYG VK+M D ++G+S+GFGF++F++ + +
Sbjct: 305 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKA 363
Query: 244 VKTQH--ILDGKVIDPKRAIPREEQD------------------KTGKIFVGGIGPDVRP 283
V+ + ++G++I RA + E+ + K+++ + +
Sbjct: 364 VEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDD 423
Query: 284 KEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
++ FS +GSI ++M ++ G+S+GFG I + +P+
Sbjct: 424 EKLRNEFSSFGSISRVKVM--QEEGQSKGFGLICFSSPE 460
Score = 62.0 bits (149), Expect = 2e-09
Identities = 44/160 (27%), Positives = 79/160 (48%), Gaps = 14/160 (8%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ + TE+ L FS G V ++I +D T RS G+ ++ F + + + T
Sbjct: 129 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 188
Query: 248 H--ILDGKVI----DPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
+ I+ GK I + A R + G +F+ + + K E FS +G I+ +++
Sbjct: 189 NFDIIKGKSIRLMWSQRDAYLR--RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 246
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIE 341
M D D G S+G+ F+ + A DR + E GK ++
Sbjct: 247 MSD-DQG-SKGYAFVHFQNQSAADRAIE----EMNGKLLK 280
>YGR159c [K] KOG4210 Nuclear localization sequence binding protein
Length = 414
Score = 67.0 bits (162), Expect = 7e-11
Identities = 41/179 (22%), Positives = 86/179 (47%), Gaps = 20/179 (11%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+F+G L+W +E L+ F G V +++ + T RSRG+G++ FEN S ++ ++
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 248 H--ILDGKVI--DPKRAIPREEQDKTGK-----------IFVGGIGPDVRPKEFEEFFSQ 292
+DG+ I D + P D+ K +F+G + + E F++
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 289
Query: 293 WGSIIDAQLMLDKDTGRSRGFGFITY----DTPDAVDRVCQNKFIEFKGKQIEIKRAEP 347
G ++ ++ +T + +GFG++ + D A+D + Q ++I+ + +++ P
Sbjct: 290 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL-QGEYIDNRPVRLDFSSPRP 347
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 66.6 bits (161), Expect = 9e-11
Identities = 34/146 (23%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ + TE L + FS G + +++ +D T RS G+ ++ F+ + + + T
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 248 H--ILDGKVIDP--KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ ++ GK + + P + G IF+ + + K + FS +G+I+ +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 304 DKDTGRSRGFGFITYDTPDAVDRVCQ 329
D++ S+G+GF+ ++T +A +R +
Sbjct: 133 DEN--GSKGYGFVHFETQEAAERAIE 156
Score = 60.5 bits (145), Expect = 7e-09
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 26/161 (16%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
+++ ++I + +E L+D F G VK+M D + G+S+GFGF++FE
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDES-GKSKGFGFVSFERHEDAQ 242
Query: 242 EVVKTQH--ILDGKVI-------------DPKRAIPREEQDKTGK-----IFVGGIGPDV 281
+ V + L+GK I + KR + +QD+ + ++V + +
Sbjct: 243 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 302
Query: 282 RPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
+ + FS +G+I A++M++ GRS+GFGF+ + +P+
Sbjct: 303 DDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPE 341
>CE02231 [R] KOG0118 FOG: RRM domain
Length = 411
Score = 66.6 bits (161), Expect = 9e-11
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 6/166 (3%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT- 246
+ + G++++TT+E + YF G V +I K + G S+GFGF+ + ++V+
Sbjct: 175 LIVLGVDFKTTDECFQKYFEDIGTVVFCEI-KRKSDGNSKGFGFVRMSSVGEQNKVLAIP 233
Query: 247 QHILDGKVIDPKRAIPREEQDKTG--KIFVGGIGPDVRPKEFEEFFSQWG-SIIDAQLML 303
QH++DG+ D K R++Q + +IFVG + V + + F S I+ ++
Sbjct: 234 QHMIDGRRCDVKVPDGRDKQGRPSISRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVT 293
Query: 304 DKDTGRS-RGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
D + RGF F+T + +A +R+ + G + + A+PR
Sbjct: 294 DVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPR 339
>At5g61030 [R] KOG0118 FOG: RRM domain
Length = 309
Score = 66.6 bits (161), Expect = 9e-11
Identities = 35/105 (33%), Positives = 57/105 (53%), Gaps = 3/105 (2%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
P +A +K+FIGG+ + E+ LR+ F+KYG V + +++ D TGRSRGFGF+T
Sbjct: 28 PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87
Query: 234 FENASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
F ++ + ++ LDG+ + + D+T GG G
Sbjct: 88 FTSSEAASSAIQA---LDGRDLHGRVVKVNYANDRTSGGGFGGGG 129
Score = 58.5 bits (140), Expect = 3e-08
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 269 TGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVC 328
+ K+F+GG+ + E F+++G ++D +++LD++TGRSRGFGF+T+ + +A
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 329 Q 329
Q
Sbjct: 99 Q 99
>At1g74230 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 66.6 bits (161), Expect = 9e-11
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
+K+F+GG+++ T E GLR+ FSKYG V + KI+ D TGRSRGF F+TF + ++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 246 TQHILDGKVIDPKR 259
LDG+ + +R
Sbjct: 94 ----LDGQDLHGRR 103
Score = 61.6 bits (148), Expect = 3e-09
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 269 TGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVC 328
+ KIFVGGI E FS++G ++DA++++D++TGRSRGF F+T+ + +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 329 QNKFIEFKGKQIEIKRAEPR 348
Q + G++I + A R
Sbjct: 93 QLDGQDLHGRRIRVNYATER 112
>7291799 [R] KOG0118 FOG: RRM domain
Length = 307
Score = 66.6 bits (161), Expect = 9e-11
Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
S D K++I L + + D FS +G + + KD G SRG+GF+ F++ +
Sbjct: 109 SPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHFDSEEAAR 167
Query: 242 EVVKTQH--ILDGKVIDPKRAIPRE--EQDKTG---KIFVGGIGPDVRPKEFEEFFSQWG 294
++ + + + + + + IPR EQ+K ++V + + + E F +G
Sbjct: 168 AAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 227
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
I +LMLD++ GRSR FGF+ Y+ P +
Sbjct: 228 RITSHKLMLDEE-GRSRRFGFVAYENPQS 255
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 66.2 bits (160), Expect = 1e-10
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 12/215 (5%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ TE+ L+ YF G +A +KIM D ++ + F+ + + + ++T
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQT- 134
Query: 248 HILDGKVIDPKRA-------IPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQ 300
L+GK I+ + D T +FVG + +V + F + S +
Sbjct: 135 --LNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 192
Query: 301 LMLDKDTGRSRGFGFITYDT-PDAVDRVCQNKFIEFKGKQIEIKRAEPRXXXXXXXXXXX 359
+M D TG SRG+GF+++ + DA + + + + G+ + I A R
Sbjct: 193 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQR 252
Query: 360 XXXXXNMSNPMQQYQMFQNPMMAGGFNPMMATGFN 394
N +QY N M G N M N
Sbjct: 253 RNYGNNNRGGFRQYNSNNNNNMNMGMNMNMNMNMN 287
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 66.2 bits (160), Expect = 1e-10
Identities = 43/168 (25%), Positives = 84/168 (49%), Gaps = 26/168 (15%)
Query: 181 LSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFEN---- 236
L + ++I L+ E TE+ D F ++G + + ++KD + RGFGF+ + N
Sbjct: 256 LKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECA 314
Query: 237 ASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTGK------------------IFVGGIG 278
+VDE+ ++ GK + RA + E+++ + +F+ +
Sbjct: 315 QKAVDELNDKEY--KGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQ 372
Query: 279 PDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR 326
+V + + FS +G+I A++M D+ G+S+GFGF+ Y TP+ ++
Sbjct: 373 DEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANK 419
Score = 65.1 bits (157), Expect = 3e-10
Identities = 37/149 (24%), Positives = 80/149 (52%), Gaps = 9/149 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENAS----SVDEV 243
+++G L+ TE L + F+ G VA +++ +D T RS G+ ++ F N ++DE+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 244 VKTQHILDGKV--IDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
T ++ G+ I + P + TG +F+ + P + K + FS +G I+ ++
Sbjct: 142 NYT--LIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 199
Query: 302 MLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
+D + G ++G+GF+ +D+ ++ + ++
Sbjct: 200 AVD-ELGNAKGYGFVHFDSVESANAAIEH 227
>At5g54900 [R] KOG0118 FOG: RRM domain
Length = 390
Score = 66.2 bits (160), Expect = 1e-10
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 15/148 (10%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
D+ ++IG L E + F++ G K++++ TG+S G+GF+ F + S + V
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 244 VKTQH------------ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFS 291
++T + + + ++ E D T IFVG + P+V + F
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT--IFVGDLAPEVTDYMLSDTFK 175
Query: 292 Q-WGSIIDAQLMLDKDTGRSRGFGFITY 318
+GS+ A+++LD+ TGRS+G+GF+ +
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 51.6 bits (122), Expect = 3e-06
Identities = 42/146 (28%), Positives = 69/146 (46%), Gaps = 28/146 (19%)
Query: 188 MFIGGLNWETTEEGLRDYFSK-YGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
+F+G L E T+ L D F YG+V K++ D TGRS+G+GF+ F + + E ++
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN---EQMRA 212
Query: 247 QHILDGKV-------IDP---KRAIPREE---QDKTGK-----------IFVGGIGPDVR 282
++G+ I P K A+P + Q+ G IFVGG+ +V
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 283 PKEFEEFFSQWGSIIDAQLMLDKDTG 308
E + F Q+G ++ ++ K G
Sbjct: 273 DDELKSIFGQFGELLHVKIPPGKRCG 298
>At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 66.2 bits (160), Expect = 1e-10
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 15/180 (8%)
Query: 178 KADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENA 237
+AD RD +F + + TE + ++FSK G V +V+++ D + RS+G G++ F +
Sbjct: 160 EADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 219
Query: 238 SSVD-EVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGP------------DVRPK 284
SV + + + G+ + K + + ++ VGG GP ++
Sbjct: 220 MSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSEL 279
Query: 285 EFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD--AVDRVCQNKFIEFKGKQIEI 342
+ + F +G + QL LD +TG+ +GFGFI + + ++ N +E G+ I++
Sbjct: 280 QLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 65.9 bits (159), Expect = 2e-10
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 42/182 (23%)
Query: 178 KADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENA 237
+ D S N +F+G L+ E T+ L D FS + + ++ ++M D TGRSRGFGF++F N
Sbjct: 141 REDTSSHFN-IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQ 199
Query: 238 SSVDEVV-------------------------KTQHILDGKVI--------DPKRAIPRE 264
+ + +H DGK + + R + E
Sbjct: 200 QDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNE 259
Query: 265 EQDKTG----KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDT 320
+ + ++VG + P+V + F G+ + ++ + +D +GFGF+ Y+T
Sbjct: 260 DAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD----KGFGFVRYNT 315
Query: 321 PD 322
D
Sbjct: 316 HD 317
>At1g22330 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 291
Score = 65.9 bits (159), Expect = 2e-10
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+GGL WET + +R YF ++G + E I+ D ATG+S+G+GF+TF ++ S V
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 247 QH-ILDGK 253
+ ++DG+
Sbjct: 78 PNPVIDGR 85
Score = 55.1 bits (131), Expect = 3e-07
Identities = 22/56 (39%), Positives = 37/56 (65%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR 326
K+FVGG+ + E +F Q+G I++A ++ DK TG+S+G+GF+T+ D+ R
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATR 73
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 65.5 bits (158), Expect = 2e-10
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV-- 240
RD +F L L ++FS G V +V+++ D + RS+G ++ F + SSV
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 241 ------DEVVKTQHILDGKVIDPKRAIPREEQDKTG-----KIFVGGIGPDVRPKEFEEF 289
V+ I+ + RA + G +++VG + ++
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGI 269
Query: 290 FSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIE 334
F +G I QLM+D +TGRS+G+GFIT+ D C K +E
Sbjct: 270 FEPFGRIESIQLMMDSETGRSKGYGFITFS-----DSECAKKALE 309
>7290689 [A] KOG0131 Splicing factor 3b subunit 4
Length = 347
Score = 65.5 bits (158), Expect = 2e-10
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++ GGL+ + +E L + F + G V V + KD T +G+GF+ F + D +K
Sbjct: 15 IYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIM 74
Query: 248 HI--LDGKVIDPKRAIPREEQ-DKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDA-QLML 303
++ L GK I +A ++ D IF+G + +V K + FS +G I+ ++M
Sbjct: 75 NMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMR 134
Query: 304 DKDTGRSRGFGFITYDTPDAVD 325
D +TG+S+ F FI + + +A D
Sbjct: 135 DPETGKSKSFAFINFASFEASD 156
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 65.1 bits (157), Expect = 3e-10
Identities = 37/143 (25%), Positives = 75/143 (51%), Gaps = 6/143 (4%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ + TE L + FS G + +++ +D AT RS G+ ++ F+ + + + T
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 248 H--ILDGKVIDP--KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ +L G+ I + P + G IF+ + + K + FS +G+I+ ++
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 304 DKDTGRSRGFGFITYDTPDAVDR 326
D+ SRGFGF+ ++T +A +
Sbjct: 133 DEH--GSRGFGFVHFETHEAAQQ 153
Score = 61.2 bits (147), Expect = 4e-09
Identities = 44/166 (26%), Positives = 77/166 (45%), Gaps = 17/166 (10%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ +FI L + L D FS +G + K+ D SRGFGF+ FE + + +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAI 155
Query: 245 KTQH---ILDGKVIDPKRAIPREEQDKTG-------KIFVGGIGPDVRPKEFEEFFSQWG 294
T + + D KV RE + + G I+V + DV + ++ FSQ+G
Sbjct: 156 NTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG 215
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQI 340
++ ++M D ++G SR FGF+ ++ + Q + GK++
Sbjct: 216 KMLSVKVMRD-NSGHSRCFGFVNFEKHEE----AQKAVVHMNGKEV 256
>At4g39260 [R] KOG0118 FOG: RRM domain
Length = 169
Score = 65.1 bits (157), Expect = 3e-10
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
+ F+GGL W T +E L+ FS++G V + KI+ D +GRSRGFGF+TF++ ++ + ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 247 QH--ILDGKVIDPKRAIPR 263
+ LDG+VI A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 57.4 bits (137), Expect = 6e-08
Identities = 27/79 (34%), Positives = 49/79 (61%), Gaps = 1/79 (1%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV-DRVCQ 329
+ FVGG+ ++ + FSQ+G +ID++++ D+++GRSRGFGF+T+ A+ D + +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 330 NKFIEFKGKQIEIKRAEPR 348
E G+ I + A+ R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>At3g06970 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 272
Score = 65.1 bits (157), Expect = 3e-10
Identities = 27/70 (38%), Positives = 47/70 (66%), Gaps = 1/70 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFEN-ASSVDEV 243
+ K+F+G L W TT + LR YF ++G V + ++ +T GRS+G+GF+TF + S+V +
Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
Query: 244 VKTQHILDGK 253
++ I+DG+
Sbjct: 71 QNSKPIIDGR 80
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 65.1 bits (157), Expect = 3e-10
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 26/173 (15%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++ L E E+ LR F K+G ++ +M+D + G SR FGF+ FE + V+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEKM 289
Query: 248 H--ILDGKVIDPKRA------------------IPREEQDKTGKIFVGGIGPDVRPKEFE 287
+ L V+ RA I R E+ + +++ + V ++ +
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQI 340
E FS++G++ +++ML+ G SRGFGF+ Y P+ R E GK I
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALS----EMNGKMI 397
Score = 58.9 bits (141), Expect = 2e-08
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 18/149 (12%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+FI L+ + L + FS +G + K+ D TGRS+G+GF+ FE S +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDK- 195
Query: 248 HILDGKVIDPKRAI----------PREEQDKTGK---IFVGGIGPDVRPKEFEEFFSQWG 294
L+G +++ K+ R+E T + ++V + ++ E + F ++G
Sbjct: 196 --LNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG 253
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
I A +M D+ +G SR FGF+ ++ +A
Sbjct: 254 VISSAVVMRDQ-SGNSRCFGFVNFECTEA 281
Score = 57.0 bits (136), Expect = 8e-08
Identities = 39/151 (25%), Positives = 71/151 (46%), Gaps = 6/151 (3%)
Query: 177 IKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFEN 236
+ AD + + ++ G L+ + TE L D F V V++ +D RS G+ ++ F N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSN 98
Query: 237 ---ASSVDEVVKTQHILDGKV-IDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQ 292
A E + + D + I P G IF+ + + K E FS
Sbjct: 99 PNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSS 158
Query: 293 WGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+G+I+ ++ +D TGRS+G+GF+ ++ ++
Sbjct: 159 FGTILSCKVAMDV-TGRSKGYGFVQFEKEES 188
>7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 168
Score = 65.1 bits (157), Expect = 3e-10
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 198 TEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQH--ILDGKVI 255
T+E +R FS G + K+++D +G+S G+GF+ + A ++ V T + L KVI
Sbjct: 38 TQEEMRSLFSSIGELESCKLVRDKVSGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVI 97
Query: 256 DPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSR 311
A P E K ++V G+ ++ + E F+ +G II ++++ D +G R
Sbjct: 98 KVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGTHR 153
>At3g23830 [R] KOG0118 FOG: RRM domain
Length = 136
Score = 64.7 bits (156), Expect = 4e-10
Identities = 33/96 (34%), Positives = 53/96 (54%), Gaps = 6/96 (6%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
+K+F+GGL+W T + L+ F+ +G V E ++ D TGRSRGFGF++F S + +K
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 246 TQHILDGKVIDPKRA---IPREEQDKTGKIFVGGIG 278
+DGK ++ ++ + E F GG G
Sbjct: 95 E---MDGKELNGRQIRVNLATERSSAPRSSFGGGGG 127
Score = 54.7 bits (130), Expect = 4e-07
Identities = 25/81 (30%), Positives = 47/81 (57%), Gaps = 1/81 (1%)
Query: 269 TGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR-V 327
+ K+FVGG+ ++ F+ +G + +A ++ D++TGRSRGFGF+++ D+ + +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 328 CQNKFIEFKGKQIEIKRAEPR 348
+ E G+QI + A R
Sbjct: 94 KEMDGKELNGRQIRVNLATER 114
>At2g46780 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 304
Score = 64.7 bits (156), Expect = 4e-10
Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+F+GGL WET + +R YF ++G + E ++ D TGRS+G+GF+TF+ A +
Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRAC 80
Query: 245 KTQH-ILDGK 253
+ + ++DG+
Sbjct: 81 QNMNPVIDGR 90
Score = 63.9 bits (154), Expect = 6e-10
Identities = 27/63 (42%), Positives = 42/63 (65%)
Query: 268 KTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRV 327
K KIFVGG+ + + +F Q+G I++A ++ DK+TGRS+G+GF+T+ +A R
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 328 CQN 330
CQN
Sbjct: 80 CQN 82
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 64.3 bits (155), Expect = 5e-10
Identities = 36/160 (22%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ TE+ + F++ G+V + K++ D G + + F+ F + + ++T
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQTM 104
Query: 248 H---ILDGKVIDPKRAIPREEQDKTGK-----IFVGGIGPDVRPKEFEEFFSQWGSIIDA 299
+ +LD ++ P ++Q K +FVG + +V ++ E F +G + DA
Sbjct: 105 NKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDA 164
Query: 300 QLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQ 339
+++ D +T +S+G+GF++Y + +R + ++ G++
Sbjct: 165 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRR 204
>At3g52150 [R] KOG0118 FOG: RRM domain
Length = 546
Score = 64.3 bits (155), Expect = 5e-10
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 26/168 (15%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
S +++IG + T E L ++GAV K+M D +GRSR FGF T ++ +
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVE--KVMYDKYSGRSRRFGFATMKSVEDAN 129
Query: 242 EVVK---------TQHILDGKVI-----------DPKRAIPREEQ----DKTGKIFVGGI 277
VV+ ++G+ I P ++ + E D K++VG +
Sbjct: 130 AVVEKLNGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 189
Query: 278 GPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVD 325
V + E FS+ G ++ A++ T +S GFGF+T+ + + V+
Sbjct: 190 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVE 237
>Hs7705365 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 63.9 bits (154), Expect = 6e-10
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMK---DTATGRSRGFGFLTFENASSVDEVV 244
+FI LN++TTEE L++ FSK G V I K S GFGF+ + + +
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 245 K--TQHILDGKVID---------------PKRAIPREEQDKTGKIFVGGIGPDVRPKEFE 287
K H++DG ++ K+ +PR++ T KI V I +E
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQ--TTSKILVRNIPFQAHSREIR 849
Query: 288 EFFSQWGSIIDAQLMLD-KDTGRSRGFGFITYDTPDAVDR 326
E FS +G + +L TG RGFGF+ + T R
Sbjct: 850 ELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889
>Hs7662250 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 960
Score = 63.9 bits (154), Expect = 6e-10
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMK---DTATGRSRGFGFLTFENASSVDEVV 244
+FI LN++TTEE L++ FSK G V I K S GFGF+ + + +
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 245 K--TQHILDGKVID---------------PKRAIPREEQDKTGKIFVGGIGPDVRPKEFE 287
K H++DG ++ K+ +PR++ T KI V I +E
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQ--TTSKILVRNIPFQAHSREIR 849
Query: 288 EFFSQWGSIIDAQLMLD-KDTGRSRGFGFITYDTPDAVDR 326
E FS +G + +L TG RGFGF+ + T R
Sbjct: 850 ELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889
>Hs20485464 [R] KOG0118 FOG: RRM domain
Length = 124
Score = 63.9 bits (154), Expect = 6e-10
Identities = 38/141 (26%), Positives = 67/141 (46%), Gaps = 48/141 (34%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+FIGGL++ETT++ LR +F ++ +
Sbjct: 13 LRKLFIGGLSFETTDKSLRSHFEQWRML-------------------------------- 40
Query: 245 KTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKE-FEEFFSQWGSIIDAQLML 303
T ++D +V++PKRA+ RE+ RP+ ++F Q+G I ++M
Sbjct: 41 -TDCVVDRRVVEPKRAVSREDSQ--------------RPEHHLRDYFEQYGKIEVTEIMT 85
Query: 304 DKDTGRSRGFGFITYDTPDAV 324
D+ +G+ RGF F+T+D D+V
Sbjct: 86 DRGSGKKRGFAFLTFDDRDSV 106
>At3g16380 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 537
Score = 63.9 bits (154), Expect = 6e-10
Identities = 47/186 (25%), Positives = 91/186 (48%), Gaps = 24/186 (12%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
++D +++ L T++ L FS+YG V+ V +M+D GRSRGFGF+ F N +
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAK 256
Query: 242 EVVK--------TQHILDGKVI--DPKRAIPREE---------QDKTGKIFVGGIGPDVR 282
+ ++ ++ + GK + D +R + +++ + ++V + +
Sbjct: 257 KAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMN 316
Query: 283 PKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQ--NKFIEFKGKQI 340
E F +G I+ A++M + GRS+GFGF+ + + + + N F+ GK I
Sbjct: 317 ETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSNCEESKQAKRYLNGFL-VDGKPI 374
Query: 341 EIKRAE 346
++ AE
Sbjct: 375 VVRVAE 380
Score = 58.5 bits (140), Expect = 3e-08
Identities = 37/146 (25%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENA-SSV 240
S +++G L+ + TE+ L D FS V V + +++ TG+S + ++ F++ S+
Sbjct: 17 SSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSAS 76
Query: 241 DEVVKTQHI-LDGK---VIDPKRAIPREEQDKTG--KIFVGGIGPDVRPKEFEEFFSQWG 294
+ + + H L GK ++ +R + + +TG ++V + + E F +G
Sbjct: 77 NAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFG 136
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDT 320
SI+ +++ ++ G+S+GFGF+ +DT
Sbjct: 137 SILSCKVV--EENGQSKGFGFVQFDT 160
Score = 57.0 bits (136), Expect = 8e-08
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 17/154 (11%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++ L+ T L F +G++ K++++ G+S+GFGF+ F+ S
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSAL 171
Query: 248 H--ILDGKVIDPKRAIPREE-------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIID 298
H ++ GK + + I ++E QD T ++V + V FSQ+G++
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDST-NVYVKNLIETVTDDCLHTLFSQYGTVSS 230
Query: 299 AQLMLDKDTGRSRGFGFITYDTPD----AVDRVC 328
+M D GRSRGFGF+ + P+ A++ +C
Sbjct: 231 VVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLC 263
>Hs14719414 [R] KOG0118 FOG: RRM domain
Length = 283
Score = 63.5 bits (153), Expect = 8e-10
Identities = 29/68 (42%), Positives = 48/68 (69%), Gaps = 1/68 (1%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
N++F+GG++++T E LR +FS+YG+V EVKI+ D A G S+G+GF+TFE ++++
Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQ 91
Query: 246 TQHILDGK 253
L+ K
Sbjct: 92 EAEKLNYK 99
Score = 52.0 bits (123), Expect = 2e-06
Identities = 24/73 (32%), Positives = 47/73 (63%), Gaps = 2/73 (2%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
+IFVGGI + +FFSQ+GS+ + +++ D+ G S+G+GF+T++T + ++ Q
Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92
Query: 331 -KFIEFKGKQIEI 342
+ + +K K++ I
Sbjct: 93 AEKLNYKDKKLNI 105
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 63.5 bits (153), Expect = 8e-10
Identities = 61/248 (24%), Positives = 102/248 (40%), Gaps = 45/248 (18%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK-- 245
+F+ +E L FSK+G + +M D A G+ +GFGF+ F + + + V+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 246 TQHILDG---------------KVIDPKRAIPREEQDKTGK-----IFVGGIGPDVRPKE 285
IL+G + + KR +Q++ + ++V I D+
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 358
Query: 286 FEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD---AVDRVCQNKFIEFKGKQIEI 342
+ FS +G+I A++M+D++ GRS+GFGF+ ++ P+ A +K I K + +
Sbjct: 359 LRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
Query: 343 -KRAEPRXXXXXX------------XXXXXXXXXXNMSNPMQQYQMFQNPMMAGGFNPMM 389
+R E R + P QQ NPM A G
Sbjct: 418 AQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNAQG----- 472
Query: 390 ATGFNPQS 397
GF PQS
Sbjct: 473 RPGFQPQS 480
Score = 59.3 bits (142), Expect = 2e-08
Identities = 37/169 (21%), Positives = 83/169 (48%), Gaps = 12/169 (7%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++IG L+ + +E L + FS G V +++ +D + S G+ ++ F+ + + + T
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 248 H--ILDGKVIDPKRAI-----PREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQ 300
+ ++ G+ P R + P + G IF+ + + K + FS +G+I+ +
Sbjct: 119 NFEVIHGR---PMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCK 175
Query: 301 LMLDKDTGRSRGFGFITYDTPDAVDRVCQN-KFIEFKGKQIEIKRAEPR 348
+ D D G S+G+GF+ ++T + + + K++ + + +PR
Sbjct: 176 VATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR 223
Score = 57.8 bits (138), Expect = 4e-08
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFE---NASSVDEVV 244
+FI L+ + + D FS +G + K+ D G S+G+GF+ FE +A + E V
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKV 205
Query: 245 KTQHILDGKVIDPK---RAIPREEQDKTG----KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ D KV K RA +E ++G +FV G + ++ FS++G I
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEIT 265
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQ---NKFIEFKGKQIEIKRAEPR 348
A +M D G+ +GFGF+ + DA + + + +E ++ + RA+ +
Sbjct: 266 SAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKK 318
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 63.5 bits (153), Expect = 8e-10
Identities = 61/248 (24%), Positives = 102/248 (40%), Gaps = 45/248 (18%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK-- 245
+F+ +E L FSK+G + +M D A G+ +GFGF+ F + + + V+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 246 TQHILDG---------------KVIDPKRAIPREEQDKTGK-----IFVGGIGPDVRPKE 285
IL+G + + KR +Q++ + ++V I D+
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 358
Query: 286 FEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD---AVDRVCQNKFIEFKGKQIEI 342
+ FS +G+I A++M+D++ GRS+GFGF+ ++ P+ A +K I K + +
Sbjct: 359 LRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
Query: 343 -KRAEPRXXXXXX------------XXXXXXXXXXNMSNPMQQYQMFQNPMMAGGFNPMM 389
+R E R + P QQ NPM A G
Sbjct: 418 AQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNAQG----- 472
Query: 390 ATGFNPQS 397
GF PQS
Sbjct: 473 RPGFQPQS 480
Score = 59.3 bits (142), Expect = 2e-08
Identities = 37/169 (21%), Positives = 83/169 (48%), Gaps = 12/169 (7%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++IG L+ + +E L + FS G V +++ +D + S G+ ++ F+ + + + T
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 248 H--ILDGKVIDPKRAI-----PREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQ 300
+ ++ G+ P R + P + G IF+ + + K + FS +G+I+ +
Sbjct: 119 NFEVIHGR---PMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCK 175
Query: 301 LMLDKDTGRSRGFGFITYDTPDAVDRVCQN-KFIEFKGKQIEIKRAEPR 348
+ D D G S+G+GF+ ++T + + + K++ + + +PR
Sbjct: 176 VATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR 223
Score = 57.8 bits (138), Expect = 4e-08
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFE---NASSVDEVV 244
+FI L+ + + D FS +G + K+ D G S+G+GF+ FE +A + E V
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKV 205
Query: 245 KTQHILDGKVIDPK---RAIPREEQDKTG----KIFVGGIGPDVRPKEFEEFFSQWGSII 297
+ D KV K RA +E ++G +FV G + ++ FS++G I
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEIT 265
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQ---NKFIEFKGKQIEIKRAEPR 348
A +M D G+ +GFGF+ + DA + + + +E ++ + RA+ +
Sbjct: 266 SAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKK 318
>At5g53720 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 100
Score = 63.5 bits (153), Expect = 8e-10
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+++ GL W T EGL YF ++G + K++ D AT RS+GFGF+TF S +
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 247 -QHILDGKVIDPKRA 260
H +DG+ ++ K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
Score = 52.4 bits (124), Expect = 2e-06
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 267 DKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR 326
D+ KI+V G+ R + +F ++G I+ A+++ D T RS+GFGF+T+ ++ R
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 327 VCQNKFIEFKGKQIEIKRA 345
C+N G+ + K A
Sbjct: 66 ACENPNHTIDGRTVNCKLA 84
>Hs4506445 [AR] KOG0109 RNA-binding protein LARK contains RRM and
retroviral-type Zn-finger domains
Length = 366
Score = 63.2 bits (152), Expect = 1e-09
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+FIG L E TE+ +R F +YG V E I+K+ +GF+ E+ ++ ++ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54
Query: 247 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKD 306
H ++ + + + K+ VG I P KE F ++G +I+ ++ D
Sbjct: 55 LHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-- 112
Query: 307 TGRSRGFGFITYD-TPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ F+ + DAV+ + EF+GK++ ++ + R
Sbjct: 113 ------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 63.2 bits (152), Expect = 1e-09
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 9/152 (5%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
S D +++G L+ +T + L FS G V VK++K S F F+TFEN +
Sbjct: 10 SSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAE 67
Query: 242 EVVKT--QHILDGKVIDPKRAIPREEQD-KTGKIFVGGIGPDVRPKEFEEFFSQWGSIID 298
++ + L + I R + ++E+ +TG IFV + D K+ ++ FS +G I+
Sbjct: 68 RAIREYKHYELHNRQI---RVMKKDERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVS 124
Query: 299 AQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
++ G+S+G+GF+ + A +V +N
Sbjct: 125 CKVATTSH-GKSKGYGFVQFKEKKAAKKVIKN 155
Score = 55.5 bits (132), Expect = 2e-07
Identities = 38/159 (23%), Positives = 70/159 (43%), Gaps = 14/159 (8%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
+ +F+ L + T + L D FS +G + K+ T+ G+S+G+GF+ F+ + +V
Sbjct: 94 ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVAT-TSHGKSKGYGFVQFKEKKAAKKV 152
Query: 244 VKTQHILDGKVIDPKR--------AIPREEQDKTG----KIFVGGIGPDVRPKEFEEFFS 291
+K LDG ++ R I + E KT F+ D E E
Sbjct: 153 IKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELLE 212
Query: 292 QWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
++G + + KD G+ +GF F ++ ++ +N
Sbjct: 213 RYGKVTSLFFPV-KDNGKPKGFAFANFENHESALNAIKN 250
>At5g19350 [R] KOG0118 FOG: RRM domain
Length = 425
Score = 63.2 bits (152), Expect = 1e-09
Identities = 41/159 (25%), Positives = 77/159 (47%), Gaps = 20/159 (12%)
Query: 172 HEPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
H P+ ++ ++ ++IG L + E L FS+ G + VK++++ TG+ G+GF
Sbjct: 15 HHPQTLE-----EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGF 69
Query: 232 LTFENASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTGK-----------IFVGGIGPD 280
+ F + ++ + ++T + G + R G IFVG + PD
Sbjct: 70 IEFISHAAAERTLQTYN---GTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPD 126
Query: 281 VRPKEFEEFFS-QWGSIIDAQLMLDKDTGRSRGFGFITY 318
V +E F + S+ A+++ D TGRS+G+GF+ +
Sbjct: 127 VTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
>At2g21660 [R] KOG0118 FOG: RRM domain
Length = 176
Score = 63.2 bits (152), Expect = 1e-09
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
+ F+GGL W T + L F++YG V + KI+ D TGRSRGFGF+TF++ ++ + ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 247 QH--ILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
+ LDG+ I A R G GG G
Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGG 102
Score = 55.5 bits (132), Expect = 2e-07
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAV-DRVCQ 329
+ FVGG+ + E F+Q+G +ID++++ D++TGRSRGFGF+T+ A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 330 NKFIEFKGKQIEIKRAEPR 348
+ G+ I + A+ R
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
>At1g78260 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 302
Score = 63.2 bits (152), Expect = 1e-09
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF-ENASSVDEVVK 245
K+F+GGL WET + +R YF ++G + E I+ D TG+S+G+GF+TF E+ S+ V
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 246 TQHILDGK 253
++DG+
Sbjct: 78 PNPVIDGR 85
Score = 56.2 bits (134), Expect = 1e-07
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR 326
K+FVGG+ + E +F Q+G I++A ++ DK+TG+S+G+GF+T+ D+ R
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 63.2 bits (152), Expect = 1e-09
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+ I L + T+ L + FS G + KIM+D TG S G+GF+ ++ S ++ ++
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQK- 153
Query: 248 HILDGKVIDPKR-----AIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLM 302
L+G + KR A P + K ++V + ++ + FS +G I+ ++
Sbjct: 154 --LNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNIL 211
Query: 303 LDKDTGRSRGFGFITYD 319
DK TGR RG F+ Y+
Sbjct: 212 RDKLTGRPRGVAFVRYN 228
>YNL004w [R] KOG0118 FOG: RRM domain
Length = 429
Score = 62.8 bits (151), Expect = 1e-09
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 22/180 (12%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
N +F+G L +++T E L ++FS+ G V I+ T+ G RG G + F N+ VD ++
Sbjct: 136 NSIFVGNLTYDSTPEDLTEFFSQIGKVVRADII--TSRGHHRGMGTVEFTNSDDVDRAIR 193
Query: 246 T---QHILDGKV------------IDPKRAIPREE---QDKTGKIFVGGIGPDVRPKEFE 287
+D K+ I ++A+ R E KT ++ V + V + +
Sbjct: 194 QYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALK 253
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFIT-YDTPDAVDRVCQNKFIEFKGKQIEIKRAE 346
+ F + G++ A + LD D G S G G ++ YD D + + +G +++K E
Sbjct: 254 DIFKECGNVAHADVELDGD-GVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKE 312
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 62.8 bits (151), Expect = 1e-09
Identities = 41/155 (26%), Positives = 76/155 (48%), Gaps = 22/155 (14%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++ L E T++ L+ F KYG ++ +MKD +G SR FGF+ F + + V+
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 248 H--ILDGKVIDPKRA------------------IPREEQDKTGKIFVGGIGPDVRPKEFE 287
+ L V+ RA I R E+ + +++ + V ++ +
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD 322
E FS++G++ ++M++ G SRGFGF+ Y P+
Sbjct: 346 EMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPE 379
Score = 60.1 bits (144), Expect = 9e-09
Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+FI L+ + L + FS +G + K+ D GRS+G+GF+ FE + +
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRSKGYGFVQFEKEETAQAAIDKL 192
Query: 248 H--ILDGKVIDPKRAIPREEQDKTGK--------IFVGGIGPDVRPKEFEEFFSQWGSII 297
+ +L+ K + + R+++ ++ ++V + ++ E ++ F ++G I
Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDIS 252
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDA 323
A +M D+ +G SR FGF+ + +P+A
Sbjct: 253 SAVVMKDQ-SGNSRSFGFVNFVSPEA 277
Score = 55.5 bits (132), Expect = 2e-07
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF---ENASSVDE 242
+ +++G L+ E L D F++ V +++ +D T RS G+ ++ F E+AS E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 243 VVKTQHILDGKV-IDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
+ I D + I P G +F+ + + K E FS +G+I+ ++
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 302 MLDKDTGRSRGFGFITYDTPD----AVDRV 327
+D GRS+G+GF+ ++ + A+D++
Sbjct: 164 AMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192
>At1g20880 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 277
Score = 62.8 bits (151), Expect = 1e-09
Identities = 29/68 (42%), Positives = 43/68 (62%), Gaps = 1/68 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV-VK 245
K+F+GGL WET E LR +F +YG + E ++ D TGRS+G+GF+TF + + V
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 246 TQHILDGK 253
I+DG+
Sbjct: 85 PTPIIDGR 92
Score = 61.2 bits (147), Expect = 4e-09
Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVC 328
K+FVGG+ + + + F Q+G I++A ++ DK+TGRS+G+GF+T+ P+A R C
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>Hs22056947 [R] KOG0118 FOG: RRM domain
Length = 142
Score = 62.4 bits (150), Expect = 2e-09
Identities = 29/77 (37%), Positives = 45/77 (57%), Gaps = 6/77 (7%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV-- 244
+ F+ G+ +T E LRDYF +YG + ++IM D +G+ RGF F+TF+N SVD+ V
Sbjct: 49 RTFVAGIKEDTEEHHLRDYFQQYGKMEVIEIMTDRGSGKKRGFAFVTFDNHDSVDKTVVQ 108
Query: 245 ----KTQHILDGKVIDP 257
H +G+ +P
Sbjct: 109 KYHTANDHNCEGRFEEP 125
Score = 53.9 bits (128), Expect = 6e-07
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
+ FV GI D ++F Q+G + ++M D+ +G+ RGF F+T+D D+VD+
Sbjct: 49 RTFVAGIKEDTEEHHLRDYFQQYGKMEVIEIMTDRGSGKKRGFAFVTFDNHDSVDKTVVQ 108
Query: 331 KFIEFKGKQIEIKRAEP 347
K+ E + EP
Sbjct: 109 KYHTANDHNCEGRFEEP 125
>Hs18543876 [R] KOG0118 FOG: RRM domain
Length = 257
Score = 62.4 bits (150), Expect = 2e-09
Identities = 31/85 (36%), Positives = 53/85 (61%), Gaps = 3/85 (3%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ K+ IG L+ ET + LR++F K+ + + +M+D T RSRGF F+T+ VD +
Sbjct: 33 LRKLLIGSLSCETAD--LREHFEKWYTLTDCVVMRDLQTKRSRGFHFVTYSCVEEVDAAM 90
Query: 245 KTQ-HILDGKVIDPKRAIPREEQDK 268
+ H +DG++++PKRA+ E+ K
Sbjct: 91 CARPHEVDGRLVEPKRAVSTEDSVK 115
>At1g76460 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 279
Score = 62.4 bits (150), Expect = 2e-09
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV-VK 245
K+F+GGL WET E LR +F +YG + E ++ D TGRS+G+GF+TF + +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 246 TQHILDGK 253
I+DG+
Sbjct: 85 PTPIIDGR 92
Score = 62.0 bits (149), Expect = 2e-09
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVC 328
K+FVGG+ + + + + F Q+G I++A ++ DK+TGRS+G+GF+T+ P+A R C
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
>At1g22910 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 317
Score = 62.4 bits (150), Expect = 2e-09
Identities = 26/68 (38%), Positives = 45/68 (65%), Gaps = 1/68 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV-DEVVK 245
K+F+GGL WET +E ++ +F ++G + E ++ D A+GRS+G+GF+TF A + V
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 246 TQHILDGK 253
++DG+
Sbjct: 74 ATPVIDGR 81
Score = 53.1 bits (126), Expect = 1e-06
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVC 328
K+FVGG+ + + ++ F Q+G I++A ++ DK +GRS+G+GF+T+ +A C
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
>CE07989 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 270
Score = 62.0 bits (149), Expect = 2e-09
Identities = 40/175 (22%), Positives = 83/175 (46%), Gaps = 36/175 (20%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+F+G L+ + + E L+ F+K+G V+E K+++D T +S+G+GF++F N + + +
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAG- 87
Query: 248 HILDGKVIDPKRAI---------PREEQDK-------------TGKIFVGGIGPDVRPKE 285
++GK I KRA+ E +DK ++VG I +
Sbjct: 88 --MNGKWIG-KRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDAD 144
Query: 286 FEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQI 340
+ FS +G I + ++ +++ + F+ Y+ + + +E GK++
Sbjct: 145 LRDLFSTYGDIAEVRIF------KTQRYAFVRYEKKECATKA----IMEMNGKEM 189
>At5g53680 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 169
Score = 62.0 bits (149), Expect = 2e-09
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+++GGL W T +EGL ++F ++G + V ++ D T RS+G+GF+TF++A S K
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 247 QH-ILDGKVIDPKRA 260
+ ++G++ + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 52.8 bits (125), Expect = 1e-06
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
KI+VGG+ R + FF ++G II ++ D++T RS+G+GF+T+ ++ R C++
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 331 KFIEFKGKQIEIKRA 345
+G+ K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>At5g06210 [R] KOG0118 FOG: RRM domain
Length = 146
Score = 62.0 bits (149), Expect = 2e-09
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
+K+FIGGL++ TTE+GL + FSK G V E +I+ D + RS+GFGF+TF +S DE K
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTF---ASADEAQK 90
Query: 246 TQHILDGKVID 256
+G+ ++
Sbjct: 91 ALMEFNGQQLN 101
Score = 54.3 bits (129), Expect = 5e-07
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
K+F+GG+ + E FS+ G +++AQ+++D+ + RS+GFGF+T+ + D Q
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADE----AQK 90
Query: 331 KFIEFKGKQI 340
+EF G+Q+
Sbjct: 91 ALMEFNGQQL 100
>At3g54770 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 261
Score = 62.0 bits (149), Expect = 2e-09
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASS 239
+ K+F+GGL W+T +E + D+F KYG + E I+ D T RS+G+GF+TF++A +
Sbjct: 16 LTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70
Score = 53.9 bits (128), Expect = 6e-07
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 268 KTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRV 327
K K+FVGG+ D + + F ++G I++A ++ DK T RS+G+GF+T+ A R
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
Query: 328 CQNKFIEFKGKQ 339
C++ G++
Sbjct: 75 CEDSTPIINGRR 86
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 61.6 bits (148), Expect = 3e-09
Identities = 41/174 (23%), Positives = 82/174 (46%), Gaps = 31/174 (17%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
P + K D S + +F+G L+ E T E ++ F+ +G +++ +++KD ATG+S+G+GF++
Sbjct: 86 PSSQKKDTSNHFH-VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 144
Query: 234 FENASSVDEVVKTQ--HILDGKVI-----DPKRAIPREEQDKTGK--------------- 271
F N + + L G+ I K P+ Q+ K
Sbjct: 145 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKN 204
Query: 272 --IFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
++ GGI + + + FS +G I++ ++ +K G+ F+ + T ++
Sbjct: 205 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHES 252
>Hs13899354 [AR] KOG0109 RNA-binding protein LARK contains RRM and
retroviral-type Zn-finger domains
Length = 359
Score = 61.6 bits (148), Expect = 3e-09
Identities = 39/163 (23%), Positives = 78/163 (46%), Gaps = 17/163 (10%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+FIG L E TE+ +R F +YG V E I+K+ +GF+ E+ ++ ++ ++
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54
Query: 247 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKD 306
H ++ + + + K+ VG I P +E F ++G +I+ ++ D
Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-- 112
Query: 307 TGRSRGFGFITYD-TPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ F+ + DAV+ + EF+GK++ ++ + R
Sbjct: 113 ------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>Hs13435394 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 265
Score = 61.6 bits (148), Expect = 3e-09
Identities = 41/174 (23%), Positives = 82/174 (46%), Gaps = 31/174 (17%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
P + K D S + +F+G L+ E T E ++ F+ +G +++ +++KD ATG+S+G+GF++
Sbjct: 47 PSSQKKDTSNHFH-VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 105
Query: 234 FENASSVDEVVKTQ--HILDGKVI-----DPKRAIPREEQDKTGK--------------- 271
F N + + L G+ I K P+ Q+ K
Sbjct: 106 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKN 165
Query: 272 --IFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
++ GGI + + + FS +G I++ ++ +K G+ F+ + T ++
Sbjct: 166 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHES 213
>At1g33470 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 117
Score = 61.6 bits (148), Expect = 3e-09
Identities = 26/68 (38%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV-VK 245
K+F+GGL WET + LR+YF ++G + E ++ D ++GRS+G+GF+TF + + + V
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 246 TQHILDGK 253
++DG+
Sbjct: 68 PAPVIDGR 75
Score = 58.9 bits (141), Expect = 2e-08
Identities = 22/58 (37%), Positives = 38/58 (64%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVC 328
K+FVGG+ + +F Q+G I++A ++ DK +GRS+G+GF+T+ P+A + C
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
>At1g18630 [R] KOG0118 FOG: RRM domain
Length = 155
Score = 61.6 bits (148), Expect = 3e-09
Identities = 32/79 (40%), Positives = 50/79 (62%), Gaps = 5/79 (6%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVD---RV 327
KIFVGG+ P + +E F +G I+DA ++LD+++G SRGFGF+TYD+ + + +
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 328 CQNKFIEFKGKQIEIKRAE 346
QNK E G+ I + A+
Sbjct: 97 MQNK--ELDGRIIGVHPAD 113
Score = 53.5 bits (127), Expect = 8e-07
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 173 EPKAIKA-------DLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGR 225
+P+A++A +LS +K+F+GGL+ T E L++ F +G + + ++ D +G
Sbjct: 16 QPRALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGL 75
Query: 226 SRGFGFLTFENASSVDEVVKTQH--ILDGKVI 255
SRGFGF+T+++ + ++ LDG++I
Sbjct: 76 SRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 61.6 bits (148), Expect = 3e-09
Identities = 46/181 (25%), Positives = 80/181 (43%), Gaps = 15/181 (8%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
RD +F L+ L ++FS G V +V+++ T R +G ++ F++ SV
Sbjct: 234 RDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVAL 293
Query: 243 V------------VKTQHILDGKVIDPKRAIPREEQDKTG--KIFVGGIGPDVRPKEFEE 288
+ QH K A + + TG +++VG + ++
Sbjct: 294 ALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRG 353
Query: 289 FFSQWGSIIDAQLMLDKDTGRSRGFGFITY-DTPDAVDRVCQNKFIEFKGKQIEIKRAEP 347
F +G I QL++D +TGRS+G+GFITY + DA + Q E G+ +++
Sbjct: 354 IFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTE 413
Query: 348 R 348
R
Sbjct: 414 R 414
>7300034 [R] KOG0118 FOG: RRM domain
Length = 251
Score = 61.2 bits (147), Expect = 4e-09
Identities = 36/134 (26%), Positives = 65/134 (47%), Gaps = 2/134 (1%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+ + L + TE L FSK+G + + KI++ TG S +GF+ + + V
Sbjct: 43 LILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGM 102
Query: 248 HILD--GKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDK 305
+ GK + A P E + + ++VG + + K+ E F+ +G+I+D L+ K
Sbjct: 103 DGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHK 162
Query: 306 DTGRSRGFGFITYD 319
RSRG F+ ++
Sbjct: 163 FNNRSRGVAFLQFE 176
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 60.8 bits (146), Expect = 5e-09
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
RD +F L L D+FS G V +V+I+ D + RS+G ++ F SV
Sbjct: 129 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 188
Query: 243 VVKT--QHILDGKVI--------DPKRAIPREEQDKTG---KIFVGGIGPDVRPKEFEEF 289
+ Q +L +I + A+ Q G +++VG + ++
Sbjct: 189 AIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGI 248
Query: 290 FSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVC-QNKFIEFKGKQIEIKRAEPR 348
F +G I + LM D DTGRS+G+GFIT+ + R Q E G+ + + R
Sbjct: 249 FEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 308
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 60.8 bits (146), Expect = 5e-09
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
RD +F L L D+FS G V +V+I+ D + RS+G ++ F SV
Sbjct: 147 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 206
Query: 243 VVKT--QHILDGKVI--------DPKRAIPREEQDKTG---KIFVGGIGPDVRPKEFEEF 289
+ Q +L +I + A+ Q G +++VG + ++
Sbjct: 207 AIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGI 266
Query: 290 FSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVC-QNKFIEFKGKQIEIKRAEPR 348
F +G I + LM D DTGRS+G+GFIT+ + R Q E G+ + + R
Sbjct: 267 FEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 326
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 60.8 bits (146), Expect = 5e-09
Identities = 39/173 (22%), Positives = 80/173 (45%), Gaps = 14/173 (8%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
++++G + +E E+ +R F+ +G + + + D+ T + +GF F+ +E + ++
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 247 QH--ILDGKVIDPKR------AIP-----REEQDKTGKIFVGGIGPDVRPKEFEEFFSQW 293
+ +L G+ I R A P EE +I+V + D+ + + F +
Sbjct: 190 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 249
Query: 294 GSIIDAQLMLDKDTGRSRGFGFITYD-TPDAVDRVCQNKFIEFKGKQIEIKRA 345
G I L D TG+ +G+GFI Y+ + D V + G+ + + +A
Sbjct: 250 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 50.1 bits (118), Expect = 9e-06
Identities = 19/87 (21%), Positives = 47/87 (53%), Gaps = 8/87 (9%)
Query: 179 ADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENAS 238
A+ +R N++++ ++ + +++ ++ F +G + + +D TG+ +G+GF+ +E A
Sbjct: 219 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 278
Query: 239 SVDEVVKTQHILD--------GKVIDP 257
S + V + ++ D GK + P
Sbjct: 279 SSQDAVSSMNLFDLGGQYLRVGKAVTP 305
>Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 542
Score = 60.8 bits (146), Expect = 5e-09
Identities = 39/173 (22%), Positives = 80/173 (45%), Gaps = 14/173 (8%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
++++G + +E E+ +R F+ +G + + + D+ T + +GF F+ +E + ++
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 247 QH--ILDGKVIDPKR------AIP-----REEQDKTGKIFVGGIGPDVRPKEFEEFFSQW 293
+ +L G+ I R A P EE +I+V + D+ + + F +
Sbjct: 173 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF 232
Query: 294 GSIIDAQLMLDKDTGRSRGFGFITYD-TPDAVDRVCQNKFIEFKGKQIEIKRA 345
G I L D TG+ +G+GFI Y+ + D V + G+ + + +A
Sbjct: 233 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 285
Score = 50.1 bits (118), Expect = 9e-06
Identities = 19/87 (21%), Positives = 47/87 (53%), Gaps = 8/87 (9%)
Query: 179 ADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENAS 238
A+ +R N++++ ++ + +++ ++ F +G + + +D TG+ +G+GF+ +E A
Sbjct: 202 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 261
Query: 239 SVDEVVKTQHILD--------GKVIDP 257
S + V + ++ D GK + P
Sbjct: 262 SSQDAVSSMNLFDLGGQYLRVGKAVTP 288
>At1g49600 [R] KOG0118 FOG: RRM domain
Length = 445
Score = 60.8 bits (146), Expect = 5e-09
Identities = 40/146 (27%), Positives = 75/146 (50%), Gaps = 11/146 (7%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
D+ +++G L E L FS V+ VK++++ T +S G+GF+ F + S+ +E
Sbjct: 117 DVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Query: 244 VKT-QHILDGKVIDPKR------AIPREEQDKTG---KIFVGGIGPDVRPKE-FEEFFSQ 292
+++ + P R + + + G IFVG + PDV E F +
Sbjct: 177 LQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236
Query: 293 WGSIIDAQLMLDKDTGRSRGFGFITY 318
+ S+ A++++D +TGRS+G+GF+ +
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At1g01080 [R] KOG0118 FOG: RRM domain
Length = 293
Score = 60.8 bits (146), Expect = 5e-09
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 32/168 (19%)
Query: 202 LRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQHILDGKVID----- 256
L D F +G V V++ ++ TG SRG G++T + +S + + LDG +
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS---LDGTEVGGREMR 180
Query: 257 ---------------------PKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGS 295
PK+ + E Q K ++VG + +P FS++G+
Sbjct: 181 VRYSVDMNPGTRRNPEVLNSTPKKILMYESQHK---VYVGNLPWFTQPDGLRNHFSKFGT 237
Query: 296 IIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIK 343
I+ +++ D+ TGR+R F F+++ + + D +++G++I ++
Sbjct: 238 IVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVR 285
Score = 59.7 bits (143), Expect = 1e-08
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
+K+++G L W T +GLR++FSK+G + +++ D TGR+R F FL+F + D +
Sbjct: 212 HKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Query: 246 TQHILDGKVIDPKRAIPREEQDKT 269
+G + +R I RE +K+
Sbjct: 272 ----FNGTQYEGRRIIVREGIEKS 291
>Hs5729794 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 482
Score = 60.5 bits (145), Expect = 7e-09
Identities = 42/146 (28%), Positives = 72/146 (48%), Gaps = 11/146 (7%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATG--RSRGFGFLTFENASSVD 241
D KMF+G + +E+ LR+ F +YGAV E+ +++D + +S+G F+TF +
Sbjct: 14 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 73
Query: 242 EVVKTQH---ILDGKVIDPKRAIPREEQDKTG----KIFVGGIGPDVRPKEFEEFFSQWG 294
E H +L G + P + P + + K+F+G I + FS +G
Sbjct: 74 EAQNALHNMKVLPG-MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG 132
Query: 295 SIIDAQLMLDKDTGRSRGFGFITYDT 320
I + +++ D G SRG F+T+ T
Sbjct: 133 QIEECRILRGPD-GLSRGCAFVTFTT 157
>Hs17452185 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 511
Score = 60.5 bits (145), Expect = 7e-09
Identities = 39/137 (28%), Positives = 66/137 (47%), Gaps = 24/137 (17%)
Query: 192 GLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF-----------ENASSV 240
GL W+TTE+ L++YFS +G + V++ KD TG S+GFGF+ F N +
Sbjct: 374 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQI 433
Query: 241 DEVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQ 300
D+ V Q + + ++ E ++ K+FVG + + ++FF +ID
Sbjct: 434 DDGVTVQFLTLKQTLN--------ETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDVF 485
Query: 301 LMLDKDTGRSRGFGFIT 317
+ + R F F+T
Sbjct: 486 I-----SKPFRDFAFLT 497
>At4g00830 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 521
Score = 60.5 bits (145), Expect = 7e-09
Identities = 46/187 (24%), Positives = 87/187 (45%), Gaps = 15/187 (8%)
Query: 175 KAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYG-AVAEVKIMKD-TATGRSRGFGFL 232
K I+ LS N++FIG + TE+ R G V ++++KD T T R+RGF F+
Sbjct: 211 KTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFV 270
Query: 233 TFENASSVD----EVVKTQHILDGKVIDPKRAIPREEQDKTG------KIFVGGIGPDVR 282
+ N + D +++ + L+G A P+ + + ++V I +
Sbjct: 271 LYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTS 330
Query: 283 PKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITY-DTPDAVDRVCQNKFIEFKGKQIE 341
++ +E F + G + +++ G R FGF+ Y + A+ V + E G+ +E
Sbjct: 331 TEQLKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLE 388
Query: 342 IKRAEPR 348
+ A+P+
Sbjct: 389 VVLAKPQ 395
Score = 52.8 bits (125), Expect = 1e-06
Identities = 39/157 (24%), Positives = 70/157 (43%), Gaps = 24/157 (15%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVK--------------IMKDTATGRSRGFGF 231
+++FIGGL + EE LRD + G + EV+ +MKD +G S+G+ F
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKDRDSGDSKGYAF 175
Query: 232 LTFENASSVDEVVKTQHILDGKVIDPK--------RAIPREEQDKTGKIFVGGIGPDVRP 283
+ F+ + ++ H + K + I + ++F+G I +
Sbjct: 176 VAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSLSETKNRLFIGNIPKNWTE 235
Query: 284 KEFEEFFSQWG-SIIDAQLMLD-KDTGRSRGFGFITY 318
EF + G + + +L+ D +T R+RGF F+ Y
Sbjct: 236 DEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 272
>7290796 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 60.5 bits (145), Expect = 7e-09
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+ + L + T+ L F G + +IM+D TG S G+ F+ F + +K
Sbjct: 87 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIK-- 144
Query: 248 HILDGKVIDPKR-----AIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLM 302
+L+G + KR A P E K ++V + + + + F ++GSI+ ++
Sbjct: 145 -VLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL 203
Query: 303 LDKDTGRSRGFGFITYD 319
DK TGR RG F+ Y+
Sbjct: 204 RDKLTGRPRGVAFVRYN 220
>YIR001c [A] KOG4209 Splicing factor RNPS1 SR protein superfamily
Length = 250
Score = 60.1 bits (144), Expect = 9e-09
Identities = 28/73 (38%), Positives = 44/73 (59%)
Query: 272 IFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNK 331
IFVG I PDV P++ E+ F G I L+ D++TG +G+G+I +++P ++ Q
Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLN 125
Query: 332 FIEFKGKQIEIKR 344
E KGK+I + R
Sbjct: 126 GGELKGKKIAVSR 138
>Hs4506449 [R] KOG4733 FOG: RRM domain
Length = 407
Score = 60.1 bits (144), Expect = 9e-09
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL TT++ L YG + K + D T + +G+GF+ F++ S+ + V
Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA- 116
Query: 248 HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDT 307
L + + A ++EQD T +++ + + +E E +G +I +++ D +
Sbjct: 117 --LKASGVQAQMA-KQQEQDPT-NLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TS 171
Query: 308 GRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEP 347
G SRG GF ++ + C+ F GK I+ P
Sbjct: 172 GTSRGVGFARMESTEK----CEAIITHFNGKYIKTPPGVP 207
>CE18909 [R] KOG4733 FOG: RRM domain
Length = 409
Score = 60.1 bits (144), Expect = 9e-09
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL T ++ LR+ SKYG +A K + D AT +G+GF+ FE+ + V
Sbjct: 109 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG- 167
Query: 248 HILDGKVIDPKRA-IPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKD 306
L+ + + + A + ++EQD T +++ + D + E +++G +I +++ D
Sbjct: 168 --LNTEGVQAQMAKLQQQEQDPT-NLYIANLPLDFTEQMLETELNKFGMVISTRILRTPD 224
Query: 307 TGRSRGFGFITYDTPD 322
+SRG GF D+ +
Sbjct: 225 -NQSRGVGFARMDSKE 239
>CE18908 [R] KOG4733 FOG: RRM domain
Length = 357
Score = 60.1 bits (144), Expect = 9e-09
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL T ++ LR+ SKYG +A K + D AT +G+GF+ FE+ + V
Sbjct: 83 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDG- 141
Query: 248 HILDGKVIDPKRA-IPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKD 306
L+ + + + A + ++EQD T +++ + D + E +++G +I +++ D
Sbjct: 142 --LNTEGVQAQMAKLQQQEQDPT-NLYIANLPLDFTEQMLETELNKFGMVISTRILRTPD 198
Query: 307 TGRSRGFGFITYDTPD 322
+SRG GF D+ +
Sbjct: 199 -NQSRGVGFARMDSKE 213
>Hs5729816 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 509
Score = 59.7 bits (143), Expect = 1e-08
Identities = 46/179 (25%), Positives = 88/179 (48%), Gaps = 21/179 (11%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATG--RSRGFGFLTFENASSVD 241
D KMF+G + +E+ L++ F YGAV ++ +++D + +S+G F+TF +
Sbjct: 33 DAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAAL 92
Query: 242 EV------VKT----QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFS 291
E +KT H + K D +++ E++ K+F+G + + FS
Sbjct: 93 EAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR----KLFIGMVSKKCNENDIRVMFS 148
Query: 292 QWGSIIDAQLMLDKDTGRSRGFGFITYDT----PDAVDRVCQNKFIEFKGKQIEIKRAE 346
+G I + +++ D G SRG F+T+ T +A+ + Q++ +E I +K A+
Sbjct: 149 PFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFAD 206
>Hs14192947 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 216
Score = 59.7 bits (143), Expect = 1e-08
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+GGL + TT+ LR YF +G + E ++ D TG+SRG+GF+T + ++ + K
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 247 QH-ILDGK 253
+ I+DG+
Sbjct: 72 PNPIIDGR 79
Score = 50.8 bits (120), Expect = 5e-06
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
KIFVGG+ ++F +G I +A ++ D+ TG+SRG+GF+T A +R C++
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 331 KFIEFKGKQIEIKRA 345
G++ + A
Sbjct: 72 PNPIIDGRKANVNLA 86
>At4g36960 [R] KOG0118 FOG: RRM domain
Length = 284
Score = 59.7 bits (143), Expect = 1e-08
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
NK+F+G L E + + LRDYF ++G + + I KD RGFGF+TF D V +
Sbjct: 162 NKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR 221
Query: 246 TQHILDGKVIDPKRAIPREE 265
H + G+ + A P +E
Sbjct: 222 RSHEICGQEVAIDSATPLDE 241
>YCL011c [R] KOG0118 FOG: RRM domain
Length = 427
Score = 59.3 bits (142), Expect = 2e-08
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
N +F+ L ++ T E L++ F G V E I+ T+ G RG G + F SV + +
Sbjct: 122 NSIFVRNLTFDCTPEDLKELFGTVGEVVEADII--TSKGHHRGMGTVEFTKNESVQDAIS 179
Query: 246 TQH---ILDGKVI------------DPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFF 290
+D K++ + + REE D ++F+ + + + ++ F
Sbjct: 180 KFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMF 239
Query: 291 SQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN-KFIEFKGKQIEIK 343
+ G ++ A + LD + G SRGFG + Y T D + R +E +G+ +E++
Sbjct: 240 KECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVR 292
>Hs8922789 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)
Length = 357
Score = 59.3 bits (142), Expect = 2e-08
Identities = 41/132 (31%), Positives = 70/132 (52%), Gaps = 11/132 (8%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
++F+G L + TEE + F +YG +EV I +D RGFGF+ E + ++ E+ K
Sbjct: 47 RLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLE-SRTLAEIAKA 99
Query: 247 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKD 306
+ LDG ++ R + + V + P V + E+ FSQ+G + A +++D D
Sbjct: 100 E--LDGTIL-KSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-D 155
Query: 307 TGRSRGFGFITY 318
GR+ G GF+ +
Sbjct: 156 RGRATGKGFVEF 167
>Hs4885511 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 707
Score = 59.3 bits (142), Expect = 2e-08
Identities = 40/173 (23%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
S + + + L++ TEE L++ F K +K+ ++ G+S+G+ F+ F +
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQ-NGKSKGYAFIEFASFEDAK 537
Query: 242 EVVKT--QHILDGKVI----DPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGS 295
E + + + ++G+ I R P + +FV G+ D + +E F GS
Sbjct: 538 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GS 595
Query: 296 IIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ A+++ D++TG S+GFGF+ +++ + ++ E G ++ + A+P+
Sbjct: 596 V-RARIVTDRETGSSKGFGFVDFNSEEDAKEAMEDG--EIDGNKVTLDWAKPK 645
>ECU08g0380 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 214
Score = 59.3 bits (142), Expect = 2e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 272 IFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNK 331
IFVG I +V + E G ++ +++ DK TG+SRGFGF Y++P V++ QN
Sbjct: 7 IFVGNIDFEVPEERIIEELGAVGKVVSFRMVYDKTTGKSRGFGFCEYESPLIVEKALQNL 66
Query: 332 FIEFKGKQIEIKRAE 346
I F G+ ++I AE
Sbjct: 67 KISFNGRPVKINYAE 81
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 59.3 bits (142), Expect = 2e-08
Identities = 38/137 (27%), Positives = 73/137 (52%), Gaps = 11/137 (8%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT- 246
+++G ++ + TE L++ F+ G V K+++ + +GF+ + + S + +
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSL 116
Query: 247 --QHILDGKVIDPKRAIPREEQDKTGK---IFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
+H+ G+ I A +++ T IFVG + P+V + FS + S DA++
Sbjct: 117 NGRHLF-GQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARV 175
Query: 302 MLDKDTGRSRGFGFITY 318
M D+ TGRSRGFGF+++
Sbjct: 176 MWDQKTGRSRGFGFVSF 192
>Hs4503259 [R] KOG0118 FOG: RRM domain
Length = 295
Score = 58.9 bits (141), Expect = 2e-08
Identities = 30/79 (37%), Positives = 51/79 (63%), Gaps = 1/79 (1%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
N +F+GG++ E +R +F++YG+V EVKI+ D TG S+G+GF++F N V ++V+
Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVE 98
Query: 246 TQHILDGKVIDPKRAIPRE 264
+Q GK + AI ++
Sbjct: 99 SQINFHGKKLKLGPAIRKQ 117
>Hs14731277 [R] KOG0118 FOG: RRM domain
Length = 295
Score = 58.9 bits (141), Expect = 2e-08
Identities = 30/79 (37%), Positives = 51/79 (63%), Gaps = 1/79 (1%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
N +F+GG++ E +R +F++YG+V EVKI+ D TG S+G+GF++F N V ++V+
Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVE 98
Query: 246 TQHILDGKVIDPKRAIPRE 264
+Q GK + AI ++
Sbjct: 99 SQINFHGKKLKLGPAIRKQ 117
>Hs8400724 [R] KOG4733 FOG: RRM domain
Length = 389
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/154 (24%), Positives = 74/154 (47%), Gaps = 10/154 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL TT++ L YG + K + D T + +G+GF+ F++ ++ + V
Sbjct: 31 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA- 89
Query: 248 HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDT 307
L + + A ++EQD T +++ + + +E E +G +I +++ D +
Sbjct: 90 --LKASGVQAQMA-KQQEQDPT-NLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SS 144
Query: 308 GRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIE 341
G SRG GF ++ + C+ F GK I+
Sbjct: 145 GTSRGVGFARMESTEK----CEAVIGHFNGKFIK 174
>Hs8400722 [R] KOG4733 FOG: RRM domain
Length = 373
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/154 (24%), Positives = 74/154 (47%), Gaps = 10/154 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL TT++ L YG + K + D T + +G+GF+ F++ ++ + V
Sbjct: 31 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA- 89
Query: 248 HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDT 307
L + + A ++EQD T +++ + + +E E +G +I +++ D +
Sbjct: 90 --LKASGVQAQMA-KQQEQDPT-NLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SS 144
Query: 308 GRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIE 341
G SRG GF ++ + C+ F GK I+
Sbjct: 145 GTSRGVGFARMESTEK----CEAVIGHFNGKFIK 174
>Hs8400720 [R] KOG4733 FOG: RRM domain
Length = 419
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/154 (24%), Positives = 74/154 (47%), Gaps = 10/154 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL TT++ L YG + K + D T + +G+GF+ F++ ++ + V
Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA- 122
Query: 248 HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDT 307
L + + A ++EQD T +++ + + +E E +G +I +++ D +
Sbjct: 123 --LKASGVQAQMA-KQQEQDPT-NLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SS 177
Query: 308 GRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIE 341
G SRG GF ++ + C+ F GK I+
Sbjct: 178 GTSRGVGFARMESTEK----CEAVIGHFNGKFIK 207
>Hs8400718 [R] KOG4733 FOG: RRM domain
Length = 406
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/154 (24%), Positives = 74/154 (47%), Gaps = 10/154 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL TT++ L YG + K + D T + +G+GF+ F++ ++ + V
Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA- 122
Query: 248 HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDT 307
L + + A ++EQD T +++ + + +E E +G +I +++ D +
Sbjct: 123 --LKASGVQAQMA-KQQEQDPT-NLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SS 177
Query: 308 GRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIE 341
G SRG GF ++ + C+ F GK I+
Sbjct: 178 GTSRGVGFARMESTEK----CEAVIGHFNGKFIK 207
>Hs4759098 [R] KOG0118 FOG: RRM domain
Length = 288
Score = 58.5 bits (140), Expect = 3e-08
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 192 GLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQH--I 249
GL+ TTE LR+ FSKYG +A+V I+ D + RSRGF F+ FEN E + +
Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183
Query: 250 LDGKVIDPKRAIPREEQDKTGKIFVG 275
LDG+ I +I + T I++G
Sbjct: 184 LDGRRIRVDFSITKRPHTPTPGIYMG 209
>Hs4506447 [R] KOG4733 FOG: RRM domain
Length = 403
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/154 (24%), Positives = 74/154 (47%), Gaps = 10/154 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL TT++ L YG + K + D T + +G+GF+ F++ ++ + V
Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA- 122
Query: 248 HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDT 307
L + + A ++EQD T +++ + + +E E +G +I +++ D +
Sbjct: 123 --LKASGVQAQMA-KQQEQDPT-NLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SS 177
Query: 308 GRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIE 341
G SRG GF ++ + C+ F GK I+
Sbjct: 178 GTSRGVGFARMESTEK----CEAVIGHFNGKFIK 207
>7299058 [R] KOG0118 FOG: RRM domain
Length = 91
Score = 58.5 bits (140), Expect = 3e-08
Identities = 29/79 (36%), Positives = 44/79 (54%), Gaps = 1/79 (1%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
R K+F+G L W + LR YFSKYG VA +++ D G S+ +GF+ F + +
Sbjct: 7 RSSYKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQRDAFNS 66
Query: 243 VV-KTQHILDGKVIDPKRA 260
+ H LDG+V+ +RA
Sbjct: 67 ASNQNTHFLDGRVLTVQRA 85
>Hs22043440 [A] KOG4205 RNA-binding protein musashi/mRNA cleavage and
polyadenylation factor I complex subunit HRP1
Length = 121
Score = 58.2 bits (139), Expect = 3e-08
Identities = 29/86 (33%), Positives = 46/86 (52%), Gaps = 7/86 (8%)
Query: 220 DTATGRSRGFGFLTFENASSVDEVVKTQHI-LDGKVIDPKRAIPREEQDKTG------KI 272
D T RSRGFGF+T+ VD + + +DG+ ++PKR I RE+ + G KI
Sbjct: 2 DPNTKRSRGFGFVTYATVEEVDAAMNARPCKVDGRTVEPKRDISREDSRRPGAHLTVKKI 61
Query: 273 FVGGIGPDVRPKEFEEFFSQWGSIID 298
FVGG+ D +++F + ++
Sbjct: 62 FVGGVKEDTEEHHLKDYFEHYNDFVN 87
>Hs14141154 [A] KOG4212 RNA-binding protein hnRNP-M
Length = 691
Score = 58.2 bits (139), Expect = 3e-08
Identities = 43/144 (29%), Positives = 73/144 (49%), Gaps = 13/144 (9%)
Query: 187 KMFIGGLNWETTEEGLRDYFS-KYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV-- 243
+ FI + ++ + L+D K G V V+++ D A G+SRG + F+ S+ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMD-AEGKSRGCAVVEFKMEESMKKAAE 130
Query: 244 VKTQHILDGKVI----DPKRAIPREEQDKTGK----IFVGGIGPDVRPKEFEEFFSQWGS 295
V +H L G+ + DP R K G+ +FV + V K+ +E FS G
Sbjct: 131 VLNKHSLSGRPLKVKEDPDGECARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGV 190
Query: 296 IIDAQLMLDKDTGRSRGFGFITYD 319
++ A ++ DKD G+SRG G +T++
Sbjct: 191 VVRADILEDKD-GKSRGIGTVTFE 213
>At5g19960 [R] KOG0118 FOG: RRM domain
Length = 335
Score = 58.2 bits (139), Expect = 3e-08
Identities = 32/92 (34%), Positives = 53/92 (56%), Gaps = 4/92 (4%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
D N +++GGL ++ TEE +R FS YG+V VKI+ D + R + +GF+TF N S D+
Sbjct: 3 DGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDA 61
Query: 244 VKTQHILDGKVIDPKRAIPREEQDKTGKIFVG 275
++ +DGK I + + + G++ G
Sbjct: 62 IED---MDGKSIGGRAVRVNDVTTRGGRMNPG 90
>At2g16260 [R] KOG0118 FOG: RRM domain
Length = 185
Score = 58.2 bits (139), Expect = 3e-08
Identities = 30/92 (32%), Positives = 51/92 (54%), Gaps = 3/92 (3%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
+ F+GGL W T E+ + F+++G V + KI+ D TGRS+GF F+TF++ S+ +
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 247 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
++G+ +D + + T VGG G
Sbjct: 105 ---MNGQELDGRNITAQARGSGTRGGMVGGYG 133
Score = 50.8 bits (120), Expect = 5e-06
Identities = 22/65 (33%), Positives = 41/65 (62%), Gaps = 4/65 (6%)
Query: 267 DKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPD---- 322
D + FVGG+ + E F+++G + D+++++D++TGRS+GF F+T+ D
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRT 100
Query: 323 AVDRV 327
A+DR+
Sbjct: 101 AIDRM 105
>7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 637
Score = 58.2 bits (139), Expect = 3e-08
Identities = 36/173 (20%), Positives = 80/173 (45%), Gaps = 14/173 (8%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
++++G +++E E+ +R F+ +G + + + D T + +GF F+ +E ++
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 247 QH--ILDGKVIDPKRA--IPR---------EEQDKTGKIFVGGIGPDVRPKEFEEFFSQW 293
+ ++ G+ I R +P+ EE +I+V I PD+ ++ + F +
Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAF 250
Query: 294 GSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR-VCQNKFIEFKGKQIEIKRA 345
G I+ +L +G+GFI Y A+D + + G+ + + R+
Sbjct: 251 GPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
>Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 360
Score = 57.8 bits (138), Expect = 4e-08
Identities = 33/156 (21%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ E TE L + FS G + ++I +D T RS G+ ++ ++ ++T
Sbjct: 164 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 223
Query: 248 H--ILDGKVIDP--KRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ ++ G+ + + P + G +F+ +G + K FS +G+I+ ++
Sbjct: 224 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 283
Query: 304 DKDTGRSRGFGFITYDTPDAVDR---VCQNKFIEFK 336
D+ +G+GF+ + ++ +R V F+ ++
Sbjct: 284 DEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYR 317
>Hs13123780 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 481
Score = 57.8 bits (138), Expect = 4e-08
Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 173 EPKAIKADLSRDIN--KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFG 230
EP + D +D++ K+F+G + E+ L+ F ++G + E+ ++KD TG +G
Sbjct: 30 EPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCA 89
Query: 231 FLTF---ENASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTG---KIFVGGIGPDVRPK 284
FLT+ ++A + Q L G + P + P + + + G K+FVG + +
Sbjct: 90 FLTYCARDSAIKAQTALHEQKTLPG-MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEE 148
Query: 285 EFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDT 320
+ F +G +ID +L G S+G F+ + +
Sbjct: 149 DVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSS 183
>CE27175 [R] KOG0118 FOG: RRM domain
Length = 498
Score = 57.8 bits (138), Expect = 4e-08
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
N++F+GG TTE LR++F K+ AV +VK++K + G+S+G+GF+TFE +E+
Sbjct: 66 NRIFVGGFPTSTTETELREHFEKFFAVKDVKMVK-SLDGQSKGYGFITFETEDQAEEI-- 122
Query: 246 TQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLM 302
++ P++ + ++ K+ +GP +R F + +QL+
Sbjct: 123 ------------RKLTPKQLEFRSRKL---NLGPAIRKINSNSFQPSYAIATPSQLV 164
>CE13934 [R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)
Length = 248
Score = 57.8 bits (138), Expect = 4e-08
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 182 SRD--INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASS 239
SRD K+F+GGL + T+++ L +YF ++G + E ++ D T +SRG+GF+T ++ +S
Sbjct: 29 SRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRAS 88
Query: 240 VDEVVKTQH-ILDGK 253
+ K + I+DG+
Sbjct: 89 AERACKDPNPIIDGR 103
Score = 53.9 bits (128), Expect = 6e-07
Identities = 34/130 (26%), Positives = 56/130 (42%), Gaps = 10/130 (7%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
KIFVGG+ K E+F Q+G I +A ++ D++T +SRG+GF+T + +R C++
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 331 KFIEFKGKQIEIK----RAEPRXXXXXXXXXX------XXXXXXNMSNPMQQYQMFQNPM 380
G++ + A+PR + P P
Sbjct: 96 PNPIIDGRKANVNLAYLGAKPRTNVQLAALAAGQVQLPLTTQLQALFQPRMGLPQMYYPT 155
Query: 381 MAGGFNPMMA 390
+ G NP+MA
Sbjct: 156 VTGLVNPLMA 165
>At3g18610 [K] KOG4210 Nuclear localization sequence binding protein
Length = 636
Score = 57.8 bits (138), Expect = 4e-08
Identities = 44/196 (22%), Positives = 83/196 (41%), Gaps = 27/196 (13%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFL 232
+PK +F G L+++ + ++F + G V +V++ G +G+G +
Sbjct: 371 QPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHI 429
Query: 233 TFENASSVDEVVKTQHILDGKVI--------------DPKRAIP--REEQDKTGKIFVGG 276
F + + ++ ++GK++ P+ + P + E ++ I+V G
Sbjct: 430 EFASPEEAQKALE----MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRG 485
Query: 277 ----IGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKF 332
+G D KE FS+ G + + D++TG SRGF +I D D Q
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI--DLTSGFDEALQLSG 543
Query: 333 IEFKGKQIEIKRAEPR 348
E G I ++ + PR
Sbjct: 544 SEIGGGNIHVEESRPR 559
>At2g14550 [A] KOG0131 Splicing factor 3b subunit 4
Length = 314
Score = 57.8 bits (138), Expect = 4e-08
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 229 FGFLTFENASSVDEVVKTQHILD--GKVIDPKRAIP-REEQDKTGKIFVGGIGP-DVRPK 284
FGF+ F N D +K +++ G+ I K+A ++ D +F+G + P +V K
Sbjct: 40 FGFVQFHNEEDADYAIKVFNMIKLYGEPIRVKKASQDKKSLDVGANLFLGNLDPVNVDEK 99
Query: 285 EFEEFFSQWGSIID-AQLMLDKDTGRSRGFGFITYDTPDAVD 325
+ FS +G I D ++M D DTG RGFGFI+YD+ +A D
Sbjct: 100 MLHDTFSAFGVISDHPKIMRDPDTGNPRGFGFISYDSFEASD 141
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 57.4 bits (137), Expect = 6e-08
Identities = 38/174 (21%), Positives = 83/174 (46%), Gaps = 31/174 (17%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
P + K D S + +F+G L+ + T E ++ F+ +G +++ +++KD ATG+S+G+GF++
Sbjct: 84 PSSQKKDTSNHFH-VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 142
Query: 234 FENASSVDEVVKTQ--HILDGKVI-----DPKRAIPREEQDKTGK--------------- 271
F N + ++ L G+ I K P+ + K
Sbjct: 143 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSN 202
Query: 272 --IFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
++ GG+ + + + FS +G I++ ++ DK G+ F+ +++ ++
Sbjct: 203 CTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHES 250
Score = 57.0 bits (136), Expect = 8e-08
Identities = 34/135 (25%), Positives = 69/135 (50%), Gaps = 4/135 (2%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGF-GFLTFENASSVDEVVKT 246
+++G L+ + TE + FS+ G K++ DTA F F +A++ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68
Query: 247 QHILDGKVIDPKRAIPREEQDKTGK---IFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML 303
+ I+ +V P ++ T +FVG + P + ++ + F+ +G I DA+++
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVK 128
Query: 304 DKDTGRSRGFGFITY 318
D TG+S+G+GF+++
Sbjct: 129 DMATGKSKGYGFVSF 143
>At5g54580 [R] KOG0118 FOG: RRM domain
Length = 156
Score = 57.4 bits (137), Expect = 6e-08
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+F+ GL+ TT EGLR F+++G VA+ K++ D +G S+GFGF+ + + +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 248 --HILDGKVIDPKRAIPREE 265
LDG VI + A PRE+
Sbjct: 118 DGKFLDGWVIFAEYARPREQ 137
>At4g27000 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 57.4 bits (137), Expect = 6e-08
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEV 243
+I ++IG L E L + F G K++++ G S G+GF+ F N ++ +
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 244 VKTQHILDGKVIDPKRAI-----------PREEQDKTGKIFVGGIGPDVRPKEFEEFF-S 291
++T + + ++A R+ + +FVG + PDV E F +
Sbjct: 138 LQTYN--GAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKA 195
Query: 292 QWGSIIDAQLMLDKDTGRSRGFGFITY 318
+ S+ A+++ D+ TGRS+G+GF+ +
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRF 222
>At4g03110 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 492
Score = 57.4 bits (137), Expect = 6e-08
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+F+G + +E L F ++ V EV I+KD T SRG FL + D++V
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 247 QH---ILDG--KVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
H L G ++ K A E + K+FVG + +V E + FS++G+I D Q+
Sbjct: 79 CHNKKTLPGANSLLQVKYA-DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI 137
Query: 302 MLDKDTGRSRGFGFITYDTPD 322
+ S+G F+ Y+T +
Sbjct: 138 LRGAQQ-TSKGCAFLKYETKE 157
>At2g22090 [R] KOG0118 FOG: RRM domain
Length = 347
Score = 57.4 bits (137), Expect = 6e-08
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 176 AIKADLSRDIN--KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
A+ RD+ K+F+ GL WETT E L F YG + E ++ D ATG+++GFGF+
Sbjct: 92 AVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVM 151
Query: 234 FENASSVDEVVK 245
F+ E +K
Sbjct: 152 FKTRKGAKEALK 163
>At2g19380 [D] KOG2186 Cell growth-regulating nucleolar protein
Length = 849
Score = 57.4 bits (137), Expect = 6e-08
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 176 AIKADLSRDI--NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
AI RDI +F+ G W+TT+E L+ F YG + E ++ D TGR +G+GF+
Sbjct: 396 AILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVM 455
Query: 234 FENASSVDEVVK 245
F+ E +K
Sbjct: 456 FKTRKGAREALK 467
>At1g17370 [R] KOG0118 FOG: RRM domain
Length = 419
Score = 57.4 bits (137), Expect = 6e-08
Identities = 40/150 (26%), Positives = 77/150 (50%), Gaps = 15/150 (10%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT- 246
+++G ++ + TE L++ F+ G V K+++ + +GF+ + + S + +
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSL 111
Query: 247 --QHILDGKVIDPKRAIPREEQDKTGK---IFVGGIGPDVRPKEFEEFFSQWGSIIDAQL 301
+H+ G+ I A +++ T IFVG + P+V FS + + DA++
Sbjct: 112 NGRHLF-GQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARV 170
Query: 302 MLDKDTGRSRGFGFITY----DTPDAVDRV 327
M D+ TGRSRGFGF+++ D A+D +
Sbjct: 171 MWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 57.4 bits (137), Expect = 6e-08
Identities = 37/161 (22%), Positives = 78/161 (47%), Gaps = 22/161 (13%)
Query: 174 PKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLT 233
P +++ + +I ++IG L + E L F+ G + K++++ TG+ G+GF+
Sbjct: 50 PPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIE 109
Query: 234 FENASSVDEVVKTQHILDGKVIDPKRAIP---------------REEQDKTGKIFVGGIG 278
F + ++ + V++T + P + P + + IFVG +
Sbjct: 110 FASHAAAERVLQTFNNA------PIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLA 163
Query: 279 PDVRPKEF-EEFFSQWGSIIDAQLMLDKDTGRSRGFGFITY 318
DV E F + + S+ A++++D+ TGR++G+GF+ +
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
>Hs13123778 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 486
Score = 57.0 bits (136), Expect = 8e-08
Identities = 39/152 (25%), Positives = 69/152 (44%), Gaps = 17/152 (11%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF---ENASSV 240
D K+FIG + E+ L+ F ++G + E+ ++KD TG +G FLT+ E+A
Sbjct: 52 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Query: 241 DEVVKTQHILDGKVIDPKRAIPREEQDKTG------------KIFVGGIGPDVRPKEFEE 288
+ Q L G + P + P + + + G K+FVG + +
Sbjct: 112 QSALHEQKTLPG-MNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRR 170
Query: 289 FFSQWGSIIDAQLMLDKDTGRSRGFGFITYDT 320
F +G+I + ++ D G S+G F+ Y +
Sbjct: 171 LFEAFGNIEECTILRGPD-GNSKGCAFVKYSS 201
>Hs11863163 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 386
Score = 57.0 bits (136), Expect = 8e-08
Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 30/171 (17%)
Query: 177 IKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFEN 236
+ S+D +F+G L+ + T E ++ F+ +G +++ +++KD ATG+S+G+GF++F N
Sbjct: 97 VSTQRSQDHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 156
Query: 237 ASSVDEVVKTQ--HILDGKVI-----DPKRAIPREEQDKTGK-----------------I 272
+ ++ L G+ I K P+ + K +
Sbjct: 157 KWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTV 216
Query: 273 FVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDA 323
+ GG+ + + + FS +G I++ ++ DK G+ F+ +++ ++
Sbjct: 217 YCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHES 261
Score = 52.8 bits (125), Expect = 1e-06
Identities = 34/146 (23%), Positives = 69/146 (46%), Gaps = 15/146 (10%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGF-GFLTFENASSVDEVVKT 246
+++G L+ + TE + FS+ G K++ DTA F F +A++ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68
Query: 247 QHILDGKVIDPKRAIPREEQDKTGK--------------IFVGGIGPDVRPKEFEEFFSQ 292
+ I+ +V P ++ T +FVG + P + ++ + F+
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPQITTEDIKAAFAP 128
Query: 293 WGSIIDAQLMLDKDTGRSRGFGFITY 318
+G I DA+++ D TG+S+G+GF+++
Sbjct: 129 FGRISDARVVKDMATGKSKGYGFVSF 154
>At1g47490 [R] KOG0118 FOG: RRM domain
Length = 432
Score = 57.0 bits (136), Expect = 8e-08
Identities = 41/149 (27%), Positives = 75/149 (49%), Gaps = 12/149 (8%)
Query: 212 VAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQHILDGKVID-PKR------AIPRE 264
+ VK++++ G S G+GF+ FE+ D+V++ + D P R + +
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEK 188
Query: 265 EQDKTG---KIFVGGIGPDVRPKEFEEFFSQ-WGSIIDAQLMLDKDTGRSRGFGFITY-D 319
+ G IFVG + PDV E FS+ + S+ A+++LD +TGRS+G+GF+ + D
Sbjct: 189 RLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
Query: 320 TPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ + + ++ + + I A PR
Sbjct: 249 ENERTKAMTEMNGVKCSSRAMRIGPATPR 277
>Hs7657506 [R] KOG4733 FOG: RRM domain
Length = 411
Score = 56.6 bits (135), Expect = 1e-07
Identities = 38/154 (24%), Positives = 77/154 (49%), Gaps = 10/154 (6%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
++I GL TT++ L YG + K + D T + +G+GF+ F++ ++ + V +
Sbjct: 54 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS- 112
Query: 248 HILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDT 307
L + + A ++EQD T +++ + + +E E +G +I +++ D +
Sbjct: 113 --LKANGVQAQMA-KQQEQDPT-NLYISNLPISMDEQELENMLKPFGHVISTRILRDAN- 167
Query: 308 GRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIE 341
G SRG GF ++ + + V Q+ F GK ++
Sbjct: 168 GVSRGVGFARMESTEKCEVVIQH----FNGKYLK 197
>At2g21690 [R] KOG0118 FOG: RRM domain
Length = 117
Score = 56.6 bits (135), Expect = 1e-07
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 189 FIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQH 248
F+ GL+ +T E+ L D FSK+G V + KI+ D TG+SR FGF+TFE S+ + +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 249 ILDGK 253
+ + +
Sbjct: 70 VEESR 74
Score = 53.1 bits (126), Expect = 1e-06
Identities = 20/47 (42%), Positives = 36/47 (76%)
Query: 273 FVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYD 319
FV G+ D K+ + FS++G++ID++++ D+DTG+SR FGF+T++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFE 56
>Hs9558733 [R] KOG0118 FOG: RRM domain
Length = 282
Score = 56.2 bits (134), Expect = 1e-07
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 192 GLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQH--I 249
GL+ TTE LR+ FS+YG ++ V ++ D TGRSRGF F+ FE E ++ +
Sbjct: 125 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 184
Query: 250 LDGKVIDPKRAIPREEQDKTGKIFVG 275
LDG+ I +I + T I++G
Sbjct: 185 LDGRRIRVDYSITKRAHTPTPGIYMG 210
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 56.2 bits (134), Expect = 1e-07
Identities = 40/170 (23%), Positives = 82/170 (47%), Gaps = 18/170 (10%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV 244
+ +FI L+ L FS +G + K++ D S+G+ ++ F++ ++ + +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAI 162
Query: 245 --------KTQHILDGKVIDPK-RAIPREEQDKTG--KIFVGGIGPDVRPKEFEEFFSQW 293
+ + G+ P+ RA +D+ +FV IG D+ ++ +E F ++
Sbjct: 163 WHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY 222
Query: 294 GSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIK 343
G +++ D +G+S+GFGF+ Y+T +A Q ++ GK I+ K
Sbjct: 223 GPTESVKVIRDA-SGKSKGFGFVRYETHEA----AQKAVLDLHGKSIDGK 267
Score = 50.4 bits (119), Expect = 7e-06
Identities = 36/165 (21%), Positives = 80/165 (47%), Gaps = 13/165 (7%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+++G L+ + TE+ L F G + +I +D T G+G++ F + + + T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 248 H--ILDGKVIDPKRAIPREEQDK-----TGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQ 300
+ +++GK P R + + D+ G IF+ + + + FS +G+I+ +
Sbjct: 80 NFDLINGK---PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 301 LMLDKDTGRSRGFGFITYDTPDAVDR-VCQNKFIEFKGKQIEIKR 344
++ D D G S+G+ ++ +D+ A +R + + +Q+ + R
Sbjct: 137 VVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGR 179
>Hs16519537 [A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)
Length = 481
Score = 56.2 bits (134), Expect = 1e-07
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 184 DINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF---ENASSV 240
D K+F+G + E+ L+ F ++G + E+ ++KD TG +G FLT+ ++A
Sbjct: 44 DAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 103
Query: 241 DEVVKTQHILDG--KVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIID 298
+ Q L G + I K A E + + K+FVG +G ++ F +G I +
Sbjct: 104 QSALHEQKTLPGMNRPIQVKPA-ASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEE 162
Query: 299 AQLMLDKDTGRSRGFGFITY 318
++ D G S+G F+ +
Sbjct: 163 CTVLRSPD-GTSKGCAFVKF 181
>Hs13644124 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 710
Score = 56.2 bits (134), Expect = 1e-07
Identities = 42/174 (24%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
S + + + L++ TEE L++ F K +K+ ++ G+S+G+ F+ F +
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQ-NGKSKGYAFIEFASFEDAK 537
Query: 242 EVVKT--QHILDGKVI----DPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGS 295
E + + + ++G+ I R P + +FV G+ D + +E F GS
Sbjct: 538 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GS 595
Query: 296 IIDAQLMLDKDTGRSRGFGFITYDT-PDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ A+++ D++TG S+GFGF+ +++ DA + E G ++ + A+P+
Sbjct: 596 V-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
>At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
Length = 244
Score = 56.2 bits (134), Expect = 1e-07
Identities = 24/62 (38%), Positives = 38/62 (60%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K++IGGL+ T E L+D FS + V E ++M + TGRSRG+GF+ F + S + +
Sbjct: 64 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 123
Query: 247 QH 248
+
Sbjct: 124 MN 125
>At1g73530 [R] KOG0118 FOG: RRM domain
Length = 181
Score = 56.2 bits (134), Expect = 1e-07
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
K+++ GL++ TTE+ LRD F ++G + + ++ D R +GF FL +E + ++
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 247 QH--ILDGKVIDPKRAIPREEQDK 268
H LDG+VI + A R + +
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSR 161
>Hs18573289 [R] KOG0118 FOG: RRM domain
Length = 172
Score = 55.8 bits (133), Expect = 2e-07
Identities = 24/65 (36%), Positives = 39/65 (59%)
Query: 183 RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDE 242
+ + K+FIGGL++ETT E LR +F ++G + + +M+D T RSR GF+ VD
Sbjct: 54 KQLRKLFIGGLSFETTNESLRSHFEQWGTLTDCVVMRDPNTKRSRACGFVMCATVEEVDA 113
Query: 243 VVKTQ 247
+ +
Sbjct: 114 AMNAR 118
>At2g37510 [R] KOG0118 FOG: RRM domain
Length = 142
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
++F+ GL+ TT E L+D F+ +G + + +++ D +GRS+GFGF+T+ ++
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 247 QH--ILDGKVIDPKRAIPRE 264
+ LDG VI A PRE
Sbjct: 95 MNAKFLDGWVIFVDPARPRE 114
Score = 53.1 bits (126), Expect = 1e-06
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
++FV G+ ++ ++ F+ +G ++DA+++ D+D+GRS+GFGF+TY T + ++
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 331 KFIEF-KGKQIEIKRAEPR 348
+F G I + A PR
Sbjct: 95 MNAKFLDGWVIFVDPARPR 113
>At2g22100 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 55.8 bits (133), Expect = 2e-07
Identities = 24/67 (35%), Positives = 36/67 (52%)
Query: 179 ADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENAS 238
AD +F+ GL W+TT E L+ F YG + E ++ D TGR++GFGF+ F+
Sbjct: 108 ADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRK 167
Query: 239 SVDEVVK 245
+K
Sbjct: 168 GARAALK 174
>7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 479
Score = 55.8 bits (133), Expect = 2e-07
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 198 TEEGLRDYFSKYGAVAEVKIMKD-------------TATGRSRGFGFLTFENASSVDEVV 244
TE+ +R FS G + VK+++D + G+S G+GF+ + ++ V
Sbjct: 157 TEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAV 216
Query: 245 KTQH--ILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLM 302
+ L K I A P + K ++V G+ + +E E F+ +G+II ++++
Sbjct: 217 NVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRIL 276
Query: 303 LD--KDTGRSRGFGFITYDTPDAVDR 326
+ DT +++G GFI +D + R
Sbjct: 277 QNAGNDT-QTKGVGFIRFDKREEATR 301
>YFR023w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 611
Score = 55.5 bits (132), Expect = 2e-07
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 172 HEPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
H+ +K+ S+ + +FIG L+ TEE L+ F KY + K+ D+ T +S G G+
Sbjct: 77 HKNGKLKSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGY 136
Query: 232 LTFENASSVDEVVKTQHI--LDGKVIDPKRAIPREEQDKTGKIFVGGI--------GPDV 281
L FE+ ++ ++ + ++GK I R +P K F + P +
Sbjct: 137 LNFEDKEEAEKAMEELNYTKVNGKEI---RIMPSLRNTTFRKNFGTNVFFSNLPLNNPLL 193
Query: 282 RPKEFEEFFSQWGSIIDAQLMLDKDTG 308
+ F + FS++G I+ +L KD G
Sbjct: 194 TTRVFYDTFSRYGKILSCKLDSRKDIG 220
>At2g16940 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 600
Score = 55.5 bits (132), Expect = 2e-07
Identities = 42/158 (26%), Positives = 73/158 (45%), Gaps = 20/158 (12%)
Query: 178 KADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENA 237
+AD RD +F + TE + ++FS+ G V +V+I+ D + RSRG G++ F +
Sbjct: 174 EADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDT 233
Query: 238 SSVDEVV--KTQHILDGKV-IDPKRAIPREEQDKTG----------------KIFVGGIG 278
SV + Q +L V + P A Q T +++VG +
Sbjct: 234 MSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLH 293
Query: 279 PDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFI 316
++ + + F +GS+ Q+ D +TG +GFGF+
Sbjct: 294 INMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFV 330
>At1g47500 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 55.5 bits (132), Expect = 2e-07
Identities = 40/149 (26%), Positives = 75/149 (49%), Gaps = 12/149 (8%)
Query: 212 VAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQHILDGKVID-PKR------AIPRE 264
+ +K++++ G S G+GF+ FE+ D+V++ + D P R + +
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEK 190
Query: 265 EQDKTG---KIFVGGIGPDVRPKEFEEFFSQ-WGSIIDAQLMLDKDTGRSRGFGFITY-D 319
+ G IFVG + PDV E FS+ + S+ A+++LD +TGRS+G+GF+ + D
Sbjct: 191 RLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 250
Query: 320 TPDAVDRVCQNKFIEFKGKQIEIKRAEPR 348
+ + + ++ + + I A PR
Sbjct: 251 ENERTKAMTEMNGVKCSSRAMRIGPATPR 279
>7297205 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 448
Score = 55.5 bits (132), Expect = 2e-07
Identities = 32/111 (28%), Positives = 57/111 (50%), Gaps = 8/111 (7%)
Query: 173 EPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFL 232
+P IK +FI +N++T+E LR F YG + ++ ++ D +G+ +G+ F+
Sbjct: 89 DPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFI 148
Query: 233 TFENASSVDEVVKTQHILDGKVIDPKRAIPREEQDKTGKIFV-----GGIG 278
+E+ + K DGK ID KR + E+ +T K ++ GG+G
Sbjct: 149 EYEHERDMHAAYKH---ADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLG 196
>Hs5902144 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 246
Score = 55.1 bits (131), Expect = 3e-07
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+F+ LN +T E+ L++ FS+YG + +++++D TG S+G+ F+ ++ + V+K
Sbjct: 53 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERA---VIKAY 109
Query: 248 HILDGKVIDPKRAIPREEQDKTGKIFV-----GGIG 278
DG VID E ++T K ++ GG+G
Sbjct: 110 RDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLG 145
>Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 633
Score = 55.1 bits (131), Expect = 3e-07
Identities = 45/168 (26%), Positives = 81/168 (47%), Gaps = 12/168 (7%)
Query: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
++F+G + + E+ L F K G + ++++M D +G++RG+ F+TF + E VK
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK- 224
Query: 247 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKE--FEEFFSQWGSIIDAQLM-L 303
+ D I P + + ++FVG I P + KE EEF ++D L
Sbjct: 225 --LCDSYEIRPGKHLGVCISVANNRLFVGSI-PKNKTKENILEEFSKVTEGLVDVILYHQ 281
Query: 304 DKDTGRSRGFGFITYD----TPDAVDRVCQNKFIEFKGKQIEIKRAEP 347
D ++RGF F+ Y+ A R+ K ++ G + ++ A+P
Sbjct: 282 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK-VKVWGNVVTVEWADP 328
>At3g53460 [R] KOG0118 FOG: RRM domain
Length = 342
Score = 55.1 bits (131), Expect = 3e-07
Identities = 24/79 (30%), Positives = 46/79 (57%), Gaps = 1/79 (1%)
Query: 271 KIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN 330
+++VG + V E F++ G +++A+++ D+D+GRS+GFGF+T + V + +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 331 -KFIEFKGKQIEIKRAEPR 348
+ G+QI + AE R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 55.1 bits (131), Expect = 3e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
N++++G L+W + L + F++ G V E +++ D +GRS+GFGF+T SS EV K
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL---SSSQEVQK 313
Query: 246 TQHILDGKVIDPKR 259
+ L+G +D ++
Sbjct: 314 AINSLNGADLDGRQ 327
Score = 53.9 bits (128), Expect = 6e-07
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 238 SSVDEVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSII 297
SS EV + DG D + R K+FVG + +V + + F G++
Sbjct: 70 SSDFEVEEDDMFADG---DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVE 126
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQN-KFIEFKGKQIEIKRAEP 347
+++ DK TGRSRGFGF+T T V+ Q EF+G+ + + P
Sbjct: 127 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>CE21988 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 434
Score = 54.7 bits (130), Expect = 4e-07
Identities = 35/156 (22%), Positives = 78/156 (49%), Gaps = 14/156 (8%)
Query: 182 SRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVD 241
S D +F+ L+ T+E L F++ GAV + KI+ + G + + F+ F + +
Sbjct: 36 SEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQAT 92
Query: 242 EVVKTQH---ILDGKVIDPKRAIPREEQDKTGK--------IFVGGIGPDVRPKEFEEFF 290
+++ + +L+ ++ PRE + K +FVG + ++ + E F
Sbjct: 93 LALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAF 152
Query: 291 SQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDR 326
++G + +A+++ D +T + +G+GF++Y + +R
Sbjct: 153 VKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAER 188
>At2g47310 [A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Length = 324
Score = 54.7 bits (130), Expect = 4e-07
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 185 INKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF---ENASSVD 241
I K+++ ++ TE +R F KYG V E+ + KD TG + F+ + E ++
Sbjct: 109 IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAI 168
Query: 242 EVVKTQHILDGKVIDPKRAIPREEQDKTG--------------KIFVGGIGPDVRPKEFE 287
+ Q G+++ K E+++ G K++V + E
Sbjct: 169 AALTEQFTFPGEMLPVKVRFAEAERERIGKCRCFAPVQLPDNPKLYVRCLNKQTTKMEVN 228
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFITY 318
E FS++G I D + LD D RG+ F+ +
Sbjct: 229 EVFSRYGIIEDIYMALD-DMKICRGYAFVQF 258
>At2g43370 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 292
Score = 54.3 bits (129), Expect = 5e-07
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKTQ 247
+F+G L+ TTE+ LR+ SKYG + +++++ TG SRG+GF+ +E + +
Sbjct: 60 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 119
Query: 248 H--ILDGKVI 255
H ++DG+ I
Sbjct: 120 HHSLIDGREI 129
>Hs20149667 [R] KOG0112 Large RNA-binding protein (RRM superfamily)
Length = 957
Score = 53.9 bits (128), Expect = 6e-07
Identities = 43/146 (29%), Positives = 73/146 (49%), Gaps = 13/146 (8%)
Query: 180 DLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASS 239
D R +F+G L+ TE LR F ++G + EV I K + G++ +GFL FEN
Sbjct: 368 DDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDI-KRPSRGQTSTYGFLKFEN--- 423
Query: 240 VDEVVKTQHILDGKVI--DPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSII 297
+D + + + GK+I +P + I + T +++VGG+GP V F ++G+I
Sbjct: 424 LDMSHRAKLAMSGKIIIRNPIK-IGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIR 482
Query: 298 DAQLMLDKDTGRSRGFGFITYDTPDA 323
D + + +I Y++ DA
Sbjct: 483 TI------DYRKGDSWAYIQYESLDA 502
>Hs17437324 [R] KOG0118 FOG: RRM domain
Length = 137
Score = 53.9 bits (128), Expect = 6e-07
Identities = 32/75 (42%), Positives = 45/75 (59%), Gaps = 4/75 (5%)
Query: 181 LSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV 240
+S K+F+GGLN T E+ L D FS +G V+EV I+K+T SRGFGF+T N ++
Sbjct: 1 MSTKEGKIFVGGLNINTDEQVLEDDFSSFGPVSEVVIVKETQW--SRGFGFITITNPDAM 58
Query: 241 DEVVKTQHILDGKVI 255
+ + LDG I
Sbjct: 59 RAM--NRESLDGHQI 71
Score = 50.1 bits (118), Expect = 9e-06
Identities = 30/78 (38%), Positives = 47/78 (59%), Gaps = 5/78 (6%)
Query: 268 KTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRV 327
K GKIFVGG+ + + E+ FS +G + +++++ K+T SRGFGFIT PDA+ R
Sbjct: 4 KEGKIFVGGLNINTDEQVLEDDFSSFGPV--SEVVIVKETQWSRGFGFITITNPDAM-RA 60
Query: 328 CQNKFIEFKGKQIEIKRA 345
+ ++ G QI + A
Sbjct: 61 MNRESLD--GHQIRVDHA 76
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 53.9 bits (128), Expect = 6e-07
Identities = 42/185 (22%), Positives = 76/185 (40%), Gaps = 42/185 (22%)
Query: 180 DLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASS 239
D SR +++ L T+ L+ F ++G + +MKD G+SR FGF+ FE A +
Sbjct: 113 DKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEA 171
Query: 240 VDEVVKTQHILDGKVIDPKRAIPREEQDKTGK------------------------IFVG 275
++ ++G V+D K Q KT + ++V
Sbjct: 172 AVTAIEK---MNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVK 228
Query: 276 GIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFIEF 335
+ V + EE FS++G+I T ++G GF+ + T + + ++
Sbjct: 229 NLDDSVDNTKLEELFSEFGTI----------TSCNKGVGFVEFSTSEEASKA----MLKM 274
Query: 336 KGKQI 340
GK +
Sbjct: 275 NGKMV 279
Score = 53.5 bits (127), Expect = 8e-07
Identities = 44/171 (25%), Positives = 84/171 (48%), Gaps = 20/171 (11%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSV------- 240
+F+ L+ + L D FS +G V K+ +D A+G S+G+GF+ F + SV
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 241 -DEVVKTQHILDGKVIDPKRAIPREEQDKT---GKIFVGGIGPDVRPKEFEEFFSQWGSI 296
+++ QHI + P + R + DK+ ++V + + + F ++G I
Sbjct: 92 NGTLIRNQHI----HVCP--FVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEI 145
Query: 297 IDAQLMLDKDTGRSRGFGFITYDTPD-AVDRVCQNKFIEFKGKQIEIKRAE 346
A +M D + G+SR FGF+ ++ + AV + + + K++ + RA+
Sbjct: 146 TSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
>At1g07350 [K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment
factor (SAF-B)
Length = 385
Score = 53.5 bits (127), Expect = 8e-07
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 175 KAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGA---VAEVKIMKDTATGRSRGFGF 231
+++ +D N +++ GL+ TE L D+F+K G V +V ++ D T SRGFGF
Sbjct: 64 RSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVVDVTDVHLVLDPWTRESRGFGF 123
Query: 232 LTFENASSVDEVVKT--QHILDGKVIDPKRAIPREEQDKTGKIFVG 275
++ ++ + +++ +L G+VI ++A R + T ++G
Sbjct: 124 ISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLG 169
>CE08881 [R] KOG0118 FOG: RRM domain
Length = 114
Score = 53.1 bits (126), Expect = 1e-06
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 175 KAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF 234
K I+A +++ + W T + L YF +YG++ V + D TG RGF +TF
Sbjct: 14 KLIEARPKNTGQTVYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITF 73
Query: 235 ENASSVDEVVKTQ-HILDGKVIDPKRAIPREEQDK 268
++ ++ ++ + H++DG +D + IP ++K
Sbjct: 74 DSKDGANKAIEQRPHVIDGDRVDVEPYIPLISKNK 108
>At5g41690 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 599
Score = 53.1 bits (126), Expect = 1e-06
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVV--K 245
+F+ L +ET + D+F K G V V+++ + G+ G GF+ F + + +E + K
Sbjct: 57 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVN-LKGKLVGCGFVEFASVNEAEEALQKK 115
Query: 246 TQHILDGKVI------------DPKRAIPREEQDKTGK--------------------IF 273
LD I PK I + DK + +F
Sbjct: 116 NGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVLF 175
Query: 274 VGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQNKFI 333
V + P + + +FF+ G ++ +LM++ + G+ G+GF+ + + D + +NK
Sbjct: 176 VANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALENKNG 234
Query: 334 EF 335
E+
Sbjct: 235 EY 236
>SPBC4F6.14 [A] KOG0127 Nucleolar protein fibrillarin NOP77 (RRM superfamily)
Length = 674
Score = 52.8 bits (125), Expect = 1e-06
Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 188 MFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTF---ENASSVDEVV 244
+F+ L ++T ++ L ++FS G + ++ + TG +RG+GF+TF E+A + +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 245 KTQHILDGKVIDPKRAIPRE----------------EQDKTGKIFVGGIGPDV-RPKEFE 287
K + L G+++ A PR+ QD ++ + + + +P+ E
Sbjct: 67 KNKK-LHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLE 125
Query: 288 EFFSQWGSIIDAQLMLDKDTGRSRGFGFI 316
FS++G + + ++ K GR GF F+
Sbjct: 126 PHFSKFGKVREIKIP-TKGGGRMCGFAFV 153
>Hs7657383 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)
Length = 471
Score = 52.8 bits (125), Expect = 1e-06
Identities = 45/152 (29%), Positives = 73/152 (47%), Gaps = 15/152 (9%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
+++F+G L + TEE +R F KYG EV I KD +GFGF+ E ++ E+ K
Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLE-TRTLAEIAK 126
Query: 246 TQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDK 305
+ LD + K+ R + + V + V + EE FS +G + A +++D
Sbjct: 127 VE--LDNMPLRGKQLRVR-FACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD- 182
Query: 306 DTGRSRGFGFITYD----TPDAVDRVCQNKFI 333
D GR G G + + A+DR + F+
Sbjct: 183 DRGRPSGKGIVEFSGKPAARKALDRCSEGSFL 214
>Hs22058338 [A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)
Length = 390
Score = 52.8 bits (125), Expect = 1e-06
Identities = 45/152 (29%), Positives = 73/152 (47%), Gaps = 15/152 (9%)
Query: 186 NKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVK 245
+++F+G L + TEE +R F KYG EV I KD +GFGF+ E ++ E+ K
Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLE-TRTLAEIAK 126
Query: 246 TQHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDK 305
+ LD + K+ R + + V + V + EE FS +G + A +++D
Sbjct: 127 VE--LDNMPLRGKQLRVR-FACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD- 182
Query: 306 DTGRSRGFGFITYD----TPDAVDRVCQNKFI 333
D GR G G + + A+DR + F+
Sbjct: 183 DRGRPSGKGIVEFSGKPAARKALDRCSEGSFL 214
>CE29126 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 580
Score = 52.8 bits (125), Expect = 1e-06
Identities = 47/192 (24%), Positives = 81/192 (41%), Gaps = 25/192 (13%)
Query: 174 PKAIKADLS---RDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFG 230
PK K +L+ RD + I + +T L ++FS GAV +V+I+ D+ TGRS+G
Sbjct: 155 PKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGIC 214
Query: 231 FLTFENASSV--DEVVKTQHILDGKVIDPKRAIPREEQDKTG----------------KI 272
++ F + SV + Q ++ + + R + +
Sbjct: 215 YVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHV 274
Query: 273 FVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTPDAVDRVCQ--N 330
V + P + K + F +G I L +D + +RGF IT+ D + C+ N
Sbjct: 275 LVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNR-ENRGFATITFRNADDAQKSCEQLN 333
Query: 331 KFIEFKGKQIEI 342
F E G+ I +
Sbjct: 334 NF-ELAGRCIRL 344
>7298629 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 154
Score = 52.8 bits (125), Expect = 1e-06
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 172 HEPKAIKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGF 231
H K D+ +D +F+ G + TE L FS+YG V + +++D+ TG+S+GF F
Sbjct: 20 HGGKKSWHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCF 79
Query: 232 LTFENASS-------------VDEVVKTQHILDGKVIDPKRAIPREEQDKTGKIFVGGIG 278
L +E+ S +D ++ H+ D K PK +E+ T ++++ G
Sbjct: 80 LCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYK--PPKENEKMDEE--TLRLYMEGCA 135
Query: 279 P 279
P
Sbjct: 136 P 136
>Hs17435511 [R] KOG0118 FOG: RRM domain
Length = 116
Score = 52.4 bits (124), Expect = 2e-06
Identities = 23/64 (35%), Positives = 38/64 (58%)
Query: 177 IKADLSRDINKMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFEN 236
+ A + +K+F+GG+ +T E LRDYF +YG ++IM D +G+ R F +T ++
Sbjct: 23 VDAPMDAKPHKIFVGGIKEDTEEYYLRDYFEQYGRTEVIEIMMDQGSGKKRSFDCVTIDH 82
Query: 237 ASSV 240
SV
Sbjct: 83 CDSV 86
>At5g04810 [R] KOG4197 FOG: PPR repeat
Length = 949
Score = 52.4 bits (124), Expect = 2e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 251 DGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLML-DKDTGR 309
D K + + P++E + GKIFVG + ++ EFEEFF Q+G I + L+ + +
Sbjct: 146 DTKPPEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEK 205
Query: 310 SRGFGFITYDTPDAVDRVCQNKFIEFKGKQIEIK 343
+ GFGFI Y + + + +EF G+ + +K
Sbjct: 206 NAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,283,935
Number of Sequences: 60738
Number of extensions: 551878
Number of successful extensions: 2771
Number of sequences better than 1.0e-05: 277
Number of HSP's better than 0.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 1781
Number of HSP's gapped (non-prelim): 725
length of query: 570
length of database: 30,389,216
effective HSP length: 112
effective length of query: 458
effective length of database: 23,586,560
effective search space: 10802644480
effective search space used: 10802644480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)