ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3252 normal B KOG1973 Chromatin structure and dynamics Chromatin remodeling protein, contains PHD Zn-finger
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3252 1144835 1143663 -391
(391 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL097c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 199 4e-51
SPBC1709.11c [B] KOG1973 Chromatin remodeling protein contains P... 94 5e-19
Hs19923771 [B] KOG1973 Chromatin remodeling protein contains PHD... 87 6e-17
Hs9506659 [B] KOG1973 Chromatin remodeling protein contains PHD ... 84 3e-16
Hs4504695 [B] KOG1973 Chromatin remodeling protein contains PHD ... 83 8e-16
7298057 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 82 1e-15
YHR090c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 81 2e-15
At3g24010 [B] KOG1973 Chromatin remodeling protein contains PHD ... 81 2e-15
Hs7705861 [B] KOG1973 Chromatin remodeling protein contains PHD ... 81 3e-15
Hs22061442 [B] KOG1973 Chromatin remodeling protein contains PHD... 81 3e-15
Hs18644730 [B] KOG1973 Chromatin remodeling protein contains PHD... 80 5e-15
7293493 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 80 7e-15
SPAC3G9.08 [B] KOG1973 Chromatin remodeling protein contains PHD... 75 1e-13
YOR064c [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 75 2e-13
7300308 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 74 3e-13
CE20286 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 74 4e-13
ECU10g1090 [B] KOG1973 Chromatin remodeling protein contains PHD... 64 4e-10
At1g54390 [B] KOG1973 Chromatin remodeling protein contains PHD ... 62 1e-09
CE29113 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 60 4e-09
CE19561 [B] KOG1973 Chromatin remodeling protein contains PHD Zn... 53 7e-07
>YNL097c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 330
Score = 199 bits (507), Expect = 4e-51
Identities = 108/162 (66%), Positives = 128/162 (78%), Gaps = 2/162 (1%)
Query: 1 MAAPANLYPGLNDISDVLEEVPLDVSRYMTLLYEIDAKCVNIIPELNKCIKGFLGGR-NV 59
M++PANL+PGLNDI+DVLEE PL SRY+TLL+EIDAKCV+ +P LN+ I FL N
Sbjct: 1 MSSPANLFPGLNDITDVLEEFPLATSRYLTLLHEIDAKCVHSMPNLNERIDKFLKKDFNK 60
Query: 60 PDESKVPL-RVINQWFQELIPSLEEKMHVSSIAYDSLERLTDRLELAYEVAISNQEIPEK 118
+++V L IN+ ++EL+PSLEEKMHVSSI D+L+RLT RLELAYEVAI N EIP
Sbjct: 61 DHQTQVRLLNNINKIYEELMPSLEEKMHVSSIMLDNLDRLTSRLELAYEVAIKNTEIPRG 120
Query: 119 LRLGNDNHPAMHLHRELMAKVESNVMTKSQQALKSESRREAM 160
LRLG DNHPAMHLH ELM K+ES +KS QALKSESRREAM
Sbjct: 121 LRLGVDNHPAMHLHHELMEKIESKSNSKSSQALKSESRREAM 162
Score = 130 bits (326), Expect = 4e-30
Identities = 57/92 (61%), Positives = 64/92 (68%), Gaps = 7/92 (7%)
Query: 299 NKKRVNTTAANNGXXXXXXXXXXXXXXXXKYQNRPKINEYGEALYCYCNQVAYGEMVGCD 358
N R+ T+ A+ G +RPK N+YGE LYCYCNQVAYGEMVGCD
Sbjct: 245 NNGRIGTSTASRGVSSVGNSNNSRI-------SRPKTNDYGEPLYCYCNQVAYGEMVGCD 297
Query: 359 GENCQLEWFHLPCIGLETLPKGKWYCDDCLKK 390
G +C+LEWFHLPCIGLETLPKGKWYCDDC KK
Sbjct: 298 GADCELEWFHLPCIGLETLPKGKWYCDDCKKK 329
>SPBC1709.11c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 305
Score = 93.6 bits (231), Expect = 5e-19
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 335 INEYGEALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
I+ GE LYCYC QV+YG+M+GCD ENC+ EWFHLPC+GL PKG WYC +C
Sbjct: 242 ISREGEQLYCYCQQVSYGQMIGCDNENCKREWFHLPCVGLVEPPKGIWYCKEC 294
>Hs19923771 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 422
Score = 86.7 bits (213), Expect = 6e-17
Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 296 QRRNKKRVNTTAANNGXXXXXXXXXXXXXXXXKYQNRPKINEYGEA------------LY 343
QR N+ R N ++ ++ K + R K EA Y
Sbjct: 296 QRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTY 355
Query: 344 CYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDCLKKN 391
C CNQV+YGEM+GCD + C +EWFH C+GL PKGKWYC C +N
Sbjct: 356 CLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGEN 403
>Hs9506659 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 418
Score = 84.3 bits (207), Expect = 3e-16
Identities = 31/48 (64%), Positives = 36/48 (74%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
E YC CNQV+YGEMVGCD ++C +EWFH C+GL PKGKWYC C
Sbjct: 359 EPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQC 406
>Hs4504695 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 280
Score = 82.8 bits (203), Expect = 8e-16
Identities = 31/52 (59%), Positives = 35/52 (66%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDCLKKN 391
E YC CNQV+YGEM+GCD E C +EWFH C+ L PKGKWYC C N
Sbjct: 211 EPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDN 262
>7298057 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 328
Score = 82.0 bits (201), Expect = 1e-15
Identities = 29/48 (60%), Positives = 36/48 (74%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
E YC C+QV+YGEM+GCD +C +EWFH C+GL T PKGKW+C C
Sbjct: 274 EPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVGLTTKPKGKWFCPKC 321
>YHR090c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 282
Score = 81.3 bits (199), Expect = 2e-15
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 333 PKINEYGEALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
P+ E + LYC+C +V++GEMV CDG NC+ EWFH C+ L+ PKG WYC +C
Sbjct: 214 PENEEEDKTLYCFCQRVSFGEMVACDGPNCKYEWFHYDCVNLKEPPKGTWYCPEC 268
>At3g24010 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 221
Score = 81.3 bits (199), Expect = 2e-15
Identities = 29/48 (60%), Positives = 36/48 (74%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
E YC CNQV++GEMV CD C++EWFH C+GL+ PKGKWYC +C
Sbjct: 164 EPTYCICNQVSFGEMVACDNNACKIEWFHFGCVGLKEQPKGKWYCPEC 211
>Hs7705861 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 249
Score = 80.9 bits (198), Expect = 3e-15
Identities = 28/48 (58%), Positives = 36/48 (74%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
E YC C+QV+YGEM+GCD +C +EWFH C+GL T P+GKW+C C
Sbjct: 195 EPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 242
>Hs22061442 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 248
Score = 80.9 bits (198), Expect = 3e-15
Identities = 28/48 (58%), Positives = 36/48 (74%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
E YC C+QV+YGEM+GCD +C +EWFH C+GL T P+GKW+C C
Sbjct: 194 EPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 241
>Hs18644730 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 240
Score = 80.1 bits (196), Expect = 5e-15
Identities = 28/51 (54%), Positives = 38/51 (73%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDCLKK 390
E YC C+QV+YGEM+GCD +C +EWFH C+ L T PKGKW+C C+++
Sbjct: 185 EPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQE 235
>7293493 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 686
Score = 79.7 bits (195), Expect = 7e-15
Identities = 29/48 (60%), Positives = 34/48 (70%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
E YC CNQV+YG+MV CD + C EWFH PC+G+ PKGKWYC C
Sbjct: 627 EPRYCTCNQVSYGDMVACDNDACPYEWFHYPCVGITQPPKGKWYCPKC 674
>SPAC3G9.08 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 283
Score = 75.5 bits (184), Expect = 1e-13
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 343 YCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
YC+C Q +YG+MV CD NC+ EWFH+ C+GL+ P+G WYC+ C
Sbjct: 230 YCFCQQGSYGQMVACDNANCEREWFHMECVGLKAPPEGTWYCEAC 274
>YOR064c [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 219
Score = 74.7 bits (182), Expect = 2e-13
Identities = 29/53 (54%), Positives = 34/53 (63%), Gaps = 1/53 (1%)
Query: 336 NEYGEALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCD-DC 387
N E +YC+C V+YG MV CD C EWFH C+GL+ PKGKWYC DC
Sbjct: 150 NNNQEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDC 202
>7300308 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 433
Score = 74.3 bits (181), Expect = 3e-13
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 333 PKINEYGEALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
P+ + E YC CNQ+++GEM+ CD + C +EWFH C+ L PKGKW+C +C
Sbjct: 350 PETIDPDEPTYCVCNQISFGEMILCDNDLCPIEWFHFSCVSLVLKPKGKWFCPNC 404
>CE20286 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 490
Score = 73.9 bits (180), Expect = 4e-13
Identities = 27/52 (51%), Positives = 35/52 (66%)
Query: 336 NEYGEALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
+E E +C+CN+ +YG+MV CD +C L WFH PCIG+ P GKWYC C
Sbjct: 423 DEEDEMHWCFCNEKSYGDMVQCDNRHCTLRWFHYPCIGMVEPPTGKWYCPRC 474
>ECU10g1090 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 183
Score = 63.9 bits (154), Expect = 4e-10
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDCLK 389
E LYC CN+ A+ M+ CD +C+ EWFH C+G+ PK W C +C K
Sbjct: 128 ERLYCKCNRPAFKSMIACDSLDCKREWFHFECVGISGPPKMSWTCPECKK 177
>At1g54390 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 270
Score = 62.0 bits (149), Expect = 1e-09
Identities = 27/46 (58%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 340 EALYCYCNQVAYGEMVGCDGENCQ-LEWFHLPCIGL--ETLPKGKW 382
E YC C+QV++G+M+ CD ENCQ EWFH C+GL ET KGKW
Sbjct: 191 EPTYCVCHQVSFGDMIACDNENCQGGEWFHYTCVGLTPETRFKGKW 236
>CE29113 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 485
Score = 60.5 bits (145), Expect = 4e-09
Identities = 25/60 (41%), Positives = 35/60 (57%), Gaps = 3/60 (5%)
Query: 331 NRPKINEYGEAL-YCYCN--QVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYCDDC 387
NR + +Y E +C CN + G MV C+ +NC ++WFH C+GL P +WYC DC
Sbjct: 422 NRERTKKYREQEEWCICNGMNINSGMMVECENKNCPIKWFHFECVGLLAAPLDEWYCTDC 481
>CE19561 [B] KOG1973 Chromatin remodeling protein contains PHD Zn-finger
Length = 247
Score = 53.1 bits (126), Expect = 7e-07
Identities = 18/43 (41%), Positives = 24/43 (54%)
Query: 342 LYCYCNQVAYGEMVGCDGENCQLEWFHLPCIGLETLPKGKWYC 384
+YC+C M+ C+ C+ WFH CIG+ T P G WYC
Sbjct: 176 MYCWCQLDKNDTMIECENPGCKYGWFHFTCIGMITAPAGDWYC 218
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,989,793
Number of Sequences: 60738
Number of extensions: 609607
Number of successful extensions: 1618
Number of sequences better than 1.0e-05: 20
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1592
Number of HSP's gapped (non-prelim): 23
length of query: 391
length of database: 30,389,216
effective HSP length: 108
effective length of query: 283
effective length of database: 23,829,512
effective search space: 6743751896
effective search space used: 6743751896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)