ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3272 suspect: %id YU KOG4719 Intracellular trafficking, secretion, and vesicular transport Nuclear pore complex protein
r_klactIII3272 suspect: %id YU KOG4719 Nuclear structure Nuclear pore complex protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3272 1149711 1152431 907
(907 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR098c [YU] KOG4719 Nuclear pore complex protein 127 1e-28
YJL041w_1 [YU] KOG4719 Nuclear pore complex protein 119 3e-26
SPAC30D11.04c [YU] KOG4719 Nuclear pore complex protein 100 8e-21
YLR335w_1 [YU] KOG4719 Nuclear pore complex protein 85 6e-16
Hs4826872 [YU] KOG4719 Nuclear pore complex protein 80 1e-14
7299479 [R] KOG1721 FOG: Zn-finger 77 9e-14
7293246 [YU] KOG4719 Nuclear pore complex protein 73 2e-12
SPAC26A3.15c [Y] KOG2196 Nuclear porin 59 4e-08
At1g59660 [YU] KOG0845 Nuclear pore complex Nup98 component (sc ... 53 2e-06
CE05198 [YU] KOG3630 Nuclear pore complex Nup214/CAN component 53 2e-06
>YOR098c [YU] KOG4719 Nuclear pore complex protein
Length = 1076
Score = 127 bits (318), Expect = 1e-28
Identities = 236/996 (23%), Positives = 345/996 (33%), Gaps = 179/996 (17%)
Query: 10 KRSISSTLASLFTKHDDTNSEDPNITRSHNEDISDSGSVVIKRQKRGFDGYEELVWNNEK 69
KRS SSTL S FT +PN R ++ + S + D + L N K
Sbjct: 16 KRSFSSTLKSFFT--------NPNKKRPSSKKVFSSNLSYANHLEES-DVEDTLHVNKRK 66
Query: 70 ITDHPLNHNGIDDINYDERPNIFLYEGDSEHGVRPPVLTIEP---------KXXXXXXXX 120
H+ N + P I +Y +E+ RPP+L I P K
Sbjct: 67 RVSGTSQHSDSLTQNNNNAP-IIIY--GTENTERPPLLPILPIQRLRLLREKQRVRNMRE 123
Query: 121 XXXXXXXXFP------LLQRQLQSAENGLYRLTDGKNATIKN------------------ 156
FP +L Q +S E G Y T + IKN
Sbjct: 124 LGLIQSTEFPSITSSVILGSQSKSDEGGSYLCTSSTPSPIKNGSCTRQLAGKSGEDTNVG 183
Query: 157 -LLVNKLQSDKKNHRVSDNPKSKKWKADFQYDLSEYD-ILKNDKKTK--------PVSAS 206
++ L++ R K W A+F+YDLSEYD I K D K K S +
Sbjct: 184 LPILKSLKNRSNRKRFHSQSKGTVWSANFEYDLSEYDAIQKKDNKDKEGNAGGDQKTSEN 243
Query: 207 MGNLESPKLPHPLLKRSTSSKKHVNTFDQTGVPSGSGLTDVQSRLL---QGKTLQKNPKI 263
N++S + + L + + D + + L++ Q LL T+ K I
Sbjct: 244 RNNIKS-SISNGNLATGPNLTSEIE--DLRADINSNRLSNPQKNLLLKGPASTVAKTAPI 300
Query: 264 AQEVV-------APTLSLKPIVKEKISEDKVLNANGPSVGFDFMNRDSTSIFPGSTDTPT 316
+ V PTL K I +K E VL P+VGFDF+ + T S T
Sbjct: 301 QESFVPNSERSGTPTLK-KNIEPKKDKESIVL----PTVGFDFIKDNETP----SKKTSP 351
Query: 317 KPTVSKNISFGNTKLDLFNNDKQKLTAPSQD-SEELPRKKKEFSSTEDTVKPFP-FTSSK 374
K T S F + +++ DK TA + S +K + + ++TV F
Sbjct: 352 KATSSAGAVF-KSSVEMGKTDKSTKTAEAPTLSFNFSQKANKTKAVDNTVPSTTLFNFGG 410
Query: 375 SLETSTEPSKPAFSFDAVKKNNTATANGGTKISDGAPSFTFGDLXXXXXXXXXXXXXXNP 434
+T T S+P F F + + AP F+FG
Sbjct: 411 KSDTVTSASQP-FKFGKTSEKSENHTESDAPPKSTAPIFSFGKQEENGDEGDDENEPKRK 469
Query: 435 -----FEKSAPEPVENLAKDGLPKFSFTGADTTGISNIPTFSFGKSSEGKEIAKPAPSFS 489
E + +P+ + K G K + G S P+F FG S + A+ P F+
Sbjct: 470 RRLPVSEDTNTKPLFDFGKTGDQKETKKGESEKDASGKPSFVFGASDKQ---AEGTPLFT 526
Query: 490 FGSQKDAGEPTNVSEMSKPMFSFNKGKXXXXXXXXXXXXXXXNTPKPLFQFG-------- 541
FG + D +N+ S F+F K KP F FG
Sbjct: 527 FGKKADV--TSNID--SSAQFTFGKAATAKETHTKPSETPATIVKKPTFTFGQSTSENKI 582
Query: 542 SSGSTEP--AAKRPDGTKTEAPV-----LPSFSFGGKPVGNDSSKNIEKEKAKP-FSFGQ 593
S GS +P + + + + +P+ PSFSF GKPV D + + KP FSF +
Sbjct: 583 SEGSAKPTFSFSKSEEERKSSPISNEAAKPSFSFPGKPV--DVQAPTDDKTLKPTFSFTE 640
Query: 594 AS--NTSAFSLNQQPSADNATEKQEAKNAVSTAVKPAFSFGSTPAAL------------- 638
+ ++S S ++PS A+ K ++ KP FSFG + AA
Sbjct: 641 PAQKDSSVVSEPKKPSFTFASSK-------TSQPKPLFSFGKSDAAKEPPGSNTSFSFTK 693
Query: 639 -PSDTTPKEAAAPSFSFG------TTKKPVQGDMXXXXXXXXXXXXXIQQPSIEKASNAI 691
P++ T K PSF+FG TT + + EK SN
Sbjct: 694 PPANETDKRPTPPSFTFGGSTTNNTTTTSTKPSFSFGAPESMKSTASTAAANTEKLSNGF 753
Query: 692 ---------------PSF--ASQNTSGQPVSGLKFDLTGFKNNNRQTTPTPFS-DSSNVG 733
SF S +++ PV G D TG T+ + FS ++N
Sbjct: 754 SFTKFNHNKEKSNSPTSFFDGSASSTPIPVLGKPTDATG-----NTTSKSAFSFGTANTN 808
Query: 734 SARGSNPPVPFSFDNVVQPGNKISVXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXXAFG 793
S FSF N GN + AFG
Sbjct: 809 GTNASANSTSFSF-NAPATGNGTTTTSNTSGTNIAGTFNVGKPDQSIASGNTNGAGSAFG 867
Query: 794 TSSN--------QPNVPFSFGGSSA-------SSTPQVPALGTGFGNSMQTNTFNPSAAA 838
SS+ F+FG + A S+T A F TN N + +
Sbjct: 868 FSSSGTAATGAASNQSSFNFGNNGAGGLNPFTSATSSTNANAGLFNKPPSTNAQNVNVPS 927
Query: 839 NFNFGGQPSQSPSVVFGSQTPQQNPSSIFSAGQQNP 874
FNF G S + N +++F+ P
Sbjct: 928 AFNFTGNNSTPGGGSVFNMNGNTNANTVFAGSNNQP 963
Score = 63.2 bits (152), Expect = 2e-09
Identities = 152/649 (23%), Positives = 223/649 (33%), Gaps = 150/649 (23%)
Query: 145 RLTDGKNATIKNLLVNKLQSDKKNHRVSDNPKSKKWKADFQYDLSE--------YDILKN 196
RL ++ K L D+K + ++ K K F + S+ + K
Sbjct: 471 RLPVSEDTNTKPLFDFGKTGDQKETKKGESEKDASGKPSFVFGASDKQAEGTPLFTFGKK 530
Query: 197 DKKTKPVSAS----MGNLESPKLPH--PLLKRSTSSKKHVNTFDQTGVPS--GSGLTDVQ 248
T + +S G + K H P +T KK TF Q+ + G
Sbjct: 531 ADVTSNIDSSAQFTFGKAATAKETHTKPSETPATIVKKPTFTFGQSTSENKISEGSAKPT 590
Query: 249 SRLLQGKTLQKNPKIAQEVVAPTLSL--KPIVKEKISEDKVLNANGPSVGFDFMNRDSTS 306
+ + +K+ I+ E P+ S KP+ + ++DK L P+ F + +S
Sbjct: 591 FSFSKSEEERKSSPISNEAAKPSFSFPGKPVDVQAPTDDKTLK---PTFSFTEPAQKDSS 647
Query: 307 IFPGSTDTPTKPTVSKNISFGNTKLDLFNNDKQKLTAPSQDSEELPRKKKEFSSTEDTVK 366
+ P KP+ + S + LF+ K S ++E P FS
Sbjct: 648 V----VSEPKKPSFTFASSKTSQPKPLFSFGK------SDAAKEPPGSNTSFS------- 690
Query: 367 PFPFTSSKSLETSTEPSKPAFSFDAVKKNNTATANGGTKISDGAPSFTFGDLXXXXXXXX 426
FT + ET P+ P+F+F NNT T + TK PSF+FG
Sbjct: 691 ---FTKPPANETDKRPTPPSFTFGGSTTNNTTTTS--TK-----PSFSFG---------- 730
Query: 427 XXXXXXNPFEKSAPEPVENLAKDGLPKFSFTGADTTGISNIPTFSFGKSSEGKEIAKPAP 486
APE +++ A S A+T +SN FSF K + KE +
Sbjct: 731 ------------APESMKSTA-------STAAANTEKLSN--GFSFTKFNHNKEKSNSPT 769
Query: 487 SFSFGSQKDA-----GEPTNV--SEMSKPMFSFNKGKXXXXXXXXXXXXXXXNTPKPLFQ 539
SF GS G+PT+ + SK FSF N P
Sbjct: 770 SFFDGSASSTPIPVLGKPTDATGNTTSKSAFSFGTANTNGTNASANSTSFSFNAP----- 824
Query: 540 FGSSGSTEPAAKRPDGTKTEAPVLPSFSFGGKPVGNDSSKNIEKEKAKPFSF-------- 591
++G+ GT + +F+ GKP + +S N F F
Sbjct: 825 --ATGNGTTTTSNTSGTN----IAGTFNV-GKPDQSIASGN-TNGAGSAFGFSSSGTAAT 876
Query: 592 GQASNTSAFS--------LNQQPSADNAT-------EKQEAKNAVSTAVKPAFSF---GS 633
G ASN S+F+ LN SA ++T K + NA + V AF+F S
Sbjct: 877 GAASNQSSFNFGNNGAGGLNPFTSATSSTNANAGLFNKPPSTNAQNVNVPSAFNFTGNNS 936
Query: 634 TPAALPSDTTPKEAAAPSFSFGTTKKPVQGDMXXXXXXXXXXXXXIQQPSIEKASNAIPS 693
TP A + G+ +P Q Q PS N S
Sbjct: 937 TPGGGSVFNMNGNTNANTVFAGSNNQPHQS----------------QTPSF----NTNSS 976
Query: 694 FASQNTSGQPVSGLKFDLTGFKNNNRQTTPTPFSDSSNVGSARGSNPPV 742
F SGL +T N T SD +A GSN V
Sbjct: 977 FTPSTVPNINFSGLNGGIT-----NTATNALRPSDIFGANAASGSNSNV 1020
>YJL041w_1 [YU] KOG4719 Nuclear pore complex protein
Length = 590
Score = 119 bits (297), Expect = 3e-26
Identities = 117/409 (28%), Positives = 161/409 (38%), Gaps = 67/409 (16%)
Query: 290 ANGPSVGFDFMNRDSTSIFPGSTDTPTKPTVSKNISFGNTKLDLFNNDKQKLTAPSQDSE 349
+NG + G F S+S+F ST++ T ++FG NN T + S
Sbjct: 114 SNGTAGGNTF---GSSSLFNNSTNSNTTKPAFGGLNFGGG-----NNTTPSSTGNANTSN 165
Query: 350 ELPRKKKEFSSTEDTVKP-FPFTSSKSLETSTEPSKPAFSFDAVKKNNTATANGGTKISD 408
L F +T + KP F F ++ + + TEP KPAFSF++ N T T S
Sbjct: 166 NL------FGATANANKPAFSFGATTNDDKKTEPDKPAFSFNSSVGNKTDAQAPTTGFSF 219
Query: 409 GAP---SFTFGDLXXXXXXXXXXXXXXNPFEKSAPEPVENLAKDGLPKFSFTGADTTGIS 465
G+ + T + NP S PEP N F +D +
Sbjct: 220 GSQLGGNKTVNEAAKPSLSFGSGSAGANPAGASQPEPTTNEPAKPALSFGTATSDNKTTN 279
Query: 466 NIPTFSFG-KSSEGKEIAKPAPSFSFGSQKDAGEPTNVSEMSKPMFSF----------NK 514
P+FSFG KS E K A P+FSFG++ + + N SKP FSF
Sbjct: 280 TTPSFSFGAKSDENKAGATSKPAFSFGAKPEEKKDDN---SSKPAFSFGAKSNEDKQDGT 336
Query: 515 GKXXXXXXXXXXXXXXXNTPKPLFQFGSSG-------STEPA---AKRPDGTKTEAPVLP 564
K T KP F FG+ +++PA +PD K A P
Sbjct: 337 AKPAFSFGAKPAEKNNNETSKPAFSFGAKSDEKKDGDASKPAFSFGAKPDENKASATSKP 396
Query: 565 SFSFGGKPVGNDSSKNIEKEKAKPFSFGQASNTS--------AFSLNQQPSADNATEKQE 616
+FSFG KP K + FSFG SN AFS +P+ N E +
Sbjct: 397 AFSFGAKP----EEKKDDNSSKPAFSFGAKSNEDKQDGTAKPAFSFGAKPAEKNNNETSK 452
Query: 617 A---------KNAVSTAVKPAFSFGSTPAALPSDTTPKEAAAPSFSFGT 656
+ A KPAFSFG A + +++ P+FSFGT
Sbjct: 453 PAFSFGAKSDEKKDGDASKPAFSFG----AKSDEKKDSDSSKPAFSFGT 497
Score = 88.2 bits (217), Expect = 5e-17
Identities = 138/491 (28%), Positives = 186/491 (37%), Gaps = 119/491 (24%)
Query: 196 NDKKTKP------VSASMGNLESPKLPHPLLKRSTS--SKKHVNTFDQTGVPSGSGLTDV 247
+DKKT+P ++S+GN + P + K VN + + GSG
Sbjct: 187 DDKKTEPDKPAFSFNSSVGNKTDAQAPTTGFSFGSQLGGNKTVNEAAKPSLSFGSGSAGA 246
Query: 248 QSRLLQGKTLQKNPKIAQEVVAPTLSLKPIVKEKISEDKVLNANGPSVGFDFMNRDSTSI 307
Q P E P LS S++K N PS F + ++ +
Sbjct: 247 NP----AGASQPEPT-TNEPAKPALSFGTAT----SDNKTTNTT-PSFSFGAKSDENKA- 295
Query: 308 FPGSTDTPT-----KPTVSKN-------ISFGNTKLDLFNNDKQKLTAPSQDSEELPRKK 355
G+T P KP K+ SFG N DKQ TA S K
Sbjct: 296 --GATSKPAFSFGAKPEEKKDDNSSKPAFSFGAKS----NEDKQDGTAKPAFS--FGAKP 347
Query: 356 KEFSSTEDTVKPFPFTSSKSLETSTEPSKPAFSFDAVKKNNTATANGGTKISDGAPSFTF 415
E ++ E + F F + + + SKPAFSF A N A+A P+F+F
Sbjct: 348 AEKNNNETSKPAFSFGAKSDEKKDGDASKPAFSFGAKPDENKASAT-------SKPAFSF 400
Query: 416 GDLXXXXXXXXXXXXXXNPFEKSAPEPVENLAKDGLPKFSF---TGADTTGISNIPTFSF 472
G P EK +N +K P FSF + D + P FSF
Sbjct: 401 G---------------AKPEEKKD----DNSSK---PAFSFGAKSNEDKQDGTAKPAFSF 438
Query: 473 G-KSSEGKEIAKPAPSFSFGSQKDAGEPTNVSEMSKPMFSFNKGKXXXXXXXXXXXXXXX 531
G K +E P+FSFG++ D + + SKP FSF
Sbjct: 439 GAKPAEKNNNETSKPAFSFGAKSDEKKD---GDASKPAFSFG---------AKSDEKKDS 486
Query: 532 NTPKPLFQFGSSGSTEPAAKRPDGTKTEAPVLPSFSFGGKPVGNDSSKNIEKEKAKPFSF 591
++ KP F FG T+ K+ G+ P+FSFG KP D KN E K FSF
Sbjct: 487 DSSKPAFSFG----TKSNEKKDSGSSK-----PAFSFGAKP---DEKKNDEVSK-PAFSF 533
Query: 592 GQASN--------TSAFSLNQQPSADNATEKQEAKNAVSTAVKPAFSFGSTPAALPSDTT 643
G +N SAFS +P T K+E A K A SFG+ P S T
Sbjct: 534 GAKANEKKESDESKSAFSFGSKP-----TGKEEGDGA-----KAAISFGAKPEEQKSSDT 583
Query: 644 PKEAAAPSFSF 654
K P+F+F
Sbjct: 584 SK----PAFTF 590
>SPAC30D11.04c [YU] KOG4719 Nuclear pore complex protein
Length = 1159
Score = 100 bits (250), Expect = 8e-21
Identities = 199/838 (23%), Positives = 293/838 (34%), Gaps = 182/838 (21%)
Query: 153 TIKNLLVNKLQSDKKNHRVSDNPKSKKWKADFQYDLSEYDILKNDKKTKPVSASMGNLES 212
T+ N NK + + ++ PKS+ + + + ++ +K + +S ++
Sbjct: 420 TLANAEDNKTFEHQPLSKDTEAPKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVPE 479
Query: 213 PKLPHPLLKRSTSSKKHVNTFDQTGVPSGSGLTDVQSRLLQ-------------GKTLQK 259
K P + +T K +V F+ + DVQ+ L+ KT Q+
Sbjct: 480 FKF-EPKTEATTDKKLNVPKFEF----KPTATADVQTNRLKENEPKPTFFAQLPSKT-QE 533
Query: 260 NPKIAQEVVAPTLSLKPIVKEKISEDKVLNANGPSVGFDF-------MNRDSTSIFP--- 309
P I + + L P +E +D +A + GF F + + P
Sbjct: 534 TPSITENKPSFFSQLSPKREETEKKDNAPSAPASTSGFSFGGFAPKTLEEKEETKAPTFN 593
Query: 310 ------GSTDTPTKPTVSKNI--SFGNTKLDLFNNDKQK---LTAPSQDSEELPR--KKK 356
ST TKPT+ N SFG ++FN+ K L + + SE P + K
Sbjct: 594 FSLNNASSTQDTTKPTLQFNFGSSFGKPTSNIFNDKKTSENGLASSTVASESKPSAPESK 653
Query: 357 EFSSTEDTVKPFPFTSSKSLETSTEPSKPAFSFDAVKK---NNTATANGGTKISDGAPSF 413
S +T PF+ + + E+ P +FSF K N++ +A T S P+
Sbjct: 654 PSSGFGNTAGSSPFSFNLTKESKEVPPTNSFSFAKKGKDEANDSLSAKASTPFSFAKPNT 713
Query: 414 TFGDLXXXXXXXXXXXXXXNPFEKSAPEPVENLAKDGLP-KFSFTGADTTGISNIPTFSF 472
++ N K+ P + ++ + K + TG P S
Sbjct: 714 E--NVTTTAPQFSFNFTKPNTDAKTNLLPEKTFNEEAVKQKETEKEVPPTG----PKASE 767
Query: 473 GKSSEGKEIAKPAPSFSFGSQKDA-GEPTNVSEMSKPMFSFNKGKXXXXXXXXXXXXXXX 531
K S A P+ +F+F S A E TN + + N
Sbjct: 768 IKDSVSSNNAVPSSTFNFVSPFAAVSEKTNENNIPNDTTKTNGN-------ATKRTLEQT 820
Query: 532 NTPKPLFQFGSSGSTEPAAKRPDGTKTEAPVLPSFSFGGKPVGNDSSKNIEKEKAKPFSF 591
KP F F S GST A + T E KP + SSK PFSF
Sbjct: 821 EDAKP-FAF-SFGSTTEQANKKASTSNETT---------KPQLDTSSKTDGVTANAPFSF 869
Query: 592 GQASNTSAFSLNQQPSADNATEKQEAKNAVSTAVKPAFSFGSTP---AALPSDTTPKEAA 648
A N +PS + A K A N T PAFSFG+ A+ ++ + +
Sbjct: 870 ASAFNAP------KPSTNTADGKDSASNL--TTPSPAFSFGNNSGVKASSNNNPSTNSST 921
Query: 649 APSFSFGTTKKPVQGDMXXXXXXXXXXXXXIQQPSIEKASNAIPSFASQNTSGQPVSGLK 708
AP FSFGT+ KP + + S AS + S
Sbjct: 922 AP-FSFGTSNKP---------------AFSFGSATSKTTSEGTAPAASASAPAPTTSAFS 965
Query: 709 FDLTGFKNNNRQTTPTPFSDSSNVGSARGSNPPVPFSFDNVVQPGNKISVXXXXXXXXXX 768
F + N + TP D+ + A G F +N QP +
Sbjct: 966 FGASNSSMNKEENTPMA-KDAGDTAPASGFKSGFSFGANNSPQPAS-------------- 1010
Query: 769 XXXXXKXXXXXXXXXXXXXXXXAFGTSSNQPNVPFSFGGSSASSTPQVPALGTGFGNSMQ 828
FGTS+ P+ F+FG S ++ PA GFG
Sbjct: 1011 ----------------------MFGTSTPAPSSAFAFGNQSGTN----PAAPAGFGGITN 1044
Query: 829 TNTFNP--------------SAAANFNFGGQPSQSPSV-------VFGSQTP----QQNP 863
T T NP +AA F G P+ S S+ FGS P P
Sbjct: 1045 TATNNPPSTGFTFTPSNAGSTAAPMFGAGNTPNPSGSINNASQAFAFGSGEPSNPASNPP 1104
Query: 864 SSIFSAGQQNPADIFNAQASTPQGGAP---------------FPPQRKIAMPGRRRRR 906
S+ FS G P+ FNA AS Q AP PP RKIA+P RR+R
Sbjct: 1105 STGFSFGAATPS-AFNASAS--QSPAPNGIQFNLGSSNSQTNAPPGRKIAVPRSRRKR 1159
>YLR335w_1 [YU] KOG4719 Nuclear pore complex protein
Length = 556
Score = 84.7 bits (208), Expect = 6e-16
Identities = 107/392 (27%), Positives = 151/392 (38%), Gaps = 75/392 (19%)
Query: 283 SEDKVLNANGPSVGFDFMNRDSTSIFPGSTDTPTKPTVSKNISFGNTKLDLFNNDKQKLT 342
SED+V GP D S S+F P K K+ S +++ + +
Sbjct: 165 SEDEV-KVEGPKFTIDAKPPISDSVFSFG---PKKENRKKDESDSENDIEIKGPEFKFSG 220
Query: 343 APSQDSEEL-PRKKKEFSSTEDTVKPFPFTSSKSLETSTEPSKPAFSFDAVKKN--NTAT 399
S D +L P K TE KPF F+S+ S T+ P +A K N N +
Sbjct: 221 TVSSDVFKLNPSTDKNEKKTETNAKPFSFSSATSTTEQTKSKNPLSLTEATKTNVDNNSK 280
Query: 400 ANG----GTK----ISDGAPSFTFGDLXXXXXXXXXXXXXXNPFEKSAPEPVENLAKDGL 451
A GTK + PSF FG + AK L
Sbjct: 281 AEASFTFGTKHAADSQNNKPSFVFG---------------------------QAAAKPSL 313
Query: 452 PKFSFTGADTT----GISNIPTFSFGKSSEGKEIAKPAPSFSFGSQKDAGEPTNVSEMSK 507
K SFT TT N + S + S + P+ SFS S+ N + SK
Sbjct: 314 EKSSFTFGSTTIEKKNDENSTSNSKPEKSSDSNDSNPSFSFSIPSK-------NTPDASK 366
Query: 508 PMFSFNKGKXXXXXXXXXXXXXXXNTPKPLFQFG-SSGSTEPAAKRPDGTKTEAP-VLPS 565
P FSF T KP+F FG ++ S + A++ D E P P+
Sbjct: 367 PSFSFG-----------VPNSSKNETSKPVFSFGAATPSAKEASQEDDNNNVEKPSSKPA 415
Query: 566 FSFGGKPVGNDSSKNIEKEKAKPFSFGQASNTSAFSLNQQPSADNATEKQEAKNAVSTAV 625
F+ G + K +K+ FSFG SN S + +PS +A + +N A
Sbjct: 416 FNLISN-AGTEKEKESKKDSKPAFSFG-ISNGSESKDSDKPSLPSAV---DGENDKKEAT 470
Query: 626 KPAFSFGSTPAALPSDTTPKEAAAPSFSFGTT 657
KPAFSFG + T + AP+F+FG++
Sbjct: 471 KPAFSFGIN----TNTTKTADTKAPTFTFGSS 498
>Hs4826872 [YU] KOG4719 Nuclear pore complex protein
Length = 1475
Score = 80.1 bits (196), Expect = 1e-14
Identities = 140/592 (23%), Positives = 209/592 (34%), Gaps = 91/592 (15%)
Query: 363 DTVKPFPFTSSKSLETSTEPSKPAFSFDAVKKNNTATANGGTKISDGAPSFTFGDLXXXX 422
++ KP + K +TS+ S A S + K +++++G ++ +F FGD
Sbjct: 875 ESAKPGTKSGFKGFDTSSSSSNSAAS-SSFKFGVSSSSSGPSQTLTSTGNFKFGDQGGFK 933
Query: 423 XXXXXXXXXXNPFEK------------------SAPEPVENLAKDGLPKFSFTGADTTGI 464
NP + S PE V+ +K+ KF + + +
Sbjct: 934 IGVSSDSGSINPMSEGFKFSKPIGDFKFGVSSESKPEEVKKDSKNDNFKFGLSSGLSNPV 993
Query: 465 SNIPTFSFGKSSEGKEIAKP------APSFSFGSQ--KDAGEPTNVSEMSKPMFSFNKGK 516
S P F FG S+ G+E K + FSFG+ P N S+ SFN G
Sbjct: 994 SLTP-FQFGVSNLGQEEKKEELPKSSSAGFSFGTGVINSTPAPANTIVTSENKSSFNLGT 1052
Query: 517 XXXXXXXXXXXXXXXNTPK----PLFQFGSS-GSTEPAAKRPDGT--------KTEAPVL 563
+ K P + G S G+ EPA+ K + PV
Sbjct: 1053 IETKSASVAPFTCKTSEAKKEEMPATKGGFSFGNVEPASLPSASVFVLGRTEEKQQEPVT 1112
Query: 564 PSFSFGGKPVGNDSSKNIEKEKAKP-FSFGQASNTSAFSLNQQPSADNATEKQEAKNAVS 622
+ GK N E+ K +P FSFG + T + ++ + + T+ E ++
Sbjct: 1113 STSLVFGKKADN------EEPKCQPVFSFGNSEQTKDENSSKSTFSFSMTKPSEKES--E 1164
Query: 623 TAVKPAFSFGSTPAALPSDTTPKEAAAPSFSFGTTKKPVQGDMXXXXXXXXXXXXXIQQP 682
K F+FG A S T + AA P FSF + I
Sbjct: 1165 QPAKATFAFG----AQTSTTADQGAAKPVFSF------LNNSSSSSSTPATSAGGGIFGS 1214
Query: 683 SIEKASNAIPSFASQNTSGQPVSGLKFDLTGFKNNNRQTTPTPFSDSSNVGSARGSNPPV 742
S ++ + +F +S PVS F T + ++ FS S + + + V
Sbjct: 1215 STSSSNPPVATFVFGQSSN-PVSSSAFGNTAESSTSQSLL---FSQDSKLATTSSTGTAV 1270
Query: 743 -PFSF------DNVVQPGNKISVXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXXAFGTS 795
PF F +N G FG S
Sbjct: 1271 TPFVFGPGASSNNTTTSGFGFGATTTSSSAGSSFVFGTGPSAPSASPAFGANQTPTFGQS 1330
Query: 796 --SNQPNVPFSFGGSSAS-------STPQVPALGTGFGNSMQTNTFN--PSAAANFNFGG 844
++QPN P FG S+S S P P GT +S Q F PS +A F G
Sbjct: 1331 QGASQPNPP-GFGSISSSTALFPTGSQPAPPTFGT-VSSSSQPPVFGQQPSQSA-FGSGT 1387
Query: 845 QPSQSPSVVFGSQTPQQN-----PSSIFSAGQQNPADIFNAQASTPQGGAPF 891
P+ S + FGS T N PS +F+ G + +AQ S GG PF
Sbjct: 1388 TPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSSTPAASAQPS-GSGGFPF 1438
>7299479 [R] KOG1721 FOG: Zn-finger
Length = 1659
Score = 77.4 bits (189), Expect = 9e-14
Identities = 135/608 (22%), Positives = 192/608 (31%), Gaps = 102/608 (16%)
Query: 324 ISFGNTKLDLFNNDKQKLTAPSQDSEE----LPRKKKEFSSTEDTVKPFPFTSSKSLETS 379
I K +L+ + +L AP+ S LP K T TS+ ++ TS
Sbjct: 863 IMLSGLKGELYLGEPDELDAPAPKSAPAPVTLPTPVKPIIIAPVTTSTTTVTSTATISTS 922
Query: 380 TEPSKPAFSFDAVKKNNTATANGGTKISDGAPSFTFGDLXXXXXXXXXXXXXXNPFEKSA 439
PSKP + V K T + P G E++
Sbjct: 923 A-PSKPIILSNQVIKPADVP---NTNSTGSVPKLVLGQPAPPAKT-----------EQTP 967
Query: 440 PEPVENLAK---DGLPKFSF-TGADTTGISNIPTFSFGKSSEGKEIAKPAPSFSFGSQKD 495
P+P++ + D PKF T T S+ P SFG + APSFSFGS +
Sbjct: 968 PKPIDKVPAAQADIPPKFELSTKPVTPATSSQPLISFGTPK-----STAAPSFSFGSATN 1022
Query: 496 AGEPTNVSEMSKPMFSFNKGKXXXXXXXXXXXXXXXNTPKPLFQFGSSGSTEPAAKRPDG 555
T + T KP+F FG + + P G
Sbjct: 1023 TTSSTIAN------------------------ITNTTTSKPIFSFGQTPANGPTVGGLSG 1058
Query: 556 TKTEAPVLPSFSFGGKPVGNDSSKNIEKEKAKPFSFGQASNTSAFSLNQQPSADNATEKQ 615
KTEAP S S G + P + + T+ SL N +
Sbjct: 1059 FKTEAPATTSVSTTNP--GTQVTSTTTFGVTPPKTTTTVAPTTTVSL-------NFGQPM 1109
Query: 616 EAKNAVSTAVKPAFSFG-------STPAALPSDTTPKEAAAPSFSFGTTKKPVQGDMXXX 668
+ A T VKP FSFG TP SD + A SF TT+
Sbjct: 1110 PSFGAADTGVKPMFSFGKSNNLSSGTPTTNGSDAAAAKPAVFSFGGSTTQPAAAAPTPVF 1169
Query: 669 XXXXXXXXXXIQQPSIEKASNAIPSFASQNTSGQPVSGLKFDLTGFKNNNRQTTPTPFSD 728
P K+ PS +G + T P PF
Sbjct: 1170 GSLSKPLGEGFASPGANKSETTKPSIFGNLDNG--LGNAMKSSTNVAATTAAELPKPFGF 1227
Query: 729 SSNVGSARGSNPPVP-FSFDNVV-------QPGNKISVXXXXXXXXX--XXXXXXKXXXX 778
++ +A G + FSF P ++ ++
Sbjct: 1228 AATTTAAGGGSTATNLFSFGGTATSKAAEPAPASQKNLFGLNATTTTPFAFGGAAAGAAD 1287
Query: 779 XXXXXXXXXXXXAFGTSSN----QPNVPFSFGGSSASSTPQVPALGTGFGNSMQTNTFNP 834
AFG +N P+ FSFGG+ S+ P FG+ + T
Sbjct: 1288 KSENKDNKPIAFAFGAGNNSAVANPSGVFSFGGTDKSAPP-------AFGSGTTSVTSAT 1340
Query: 835 SAAANFNFGGQPSQSPSV-VFGSQTPQQNPSSIFSAGQQNPADIFNAQASTPQGGAPFPP 893
+ N FG +Q P+ +FGS + QQ+ + +A + T GGAP P
Sbjct: 1341 ATPTNNTFGFSTTQKPATPMFGSGSTQQSSTPAVAA----------TKPFTLGGGAPTTP 1390
Query: 894 QRKIAMPG 901
A G
Sbjct: 1391 SASPASGG 1398
Score = 75.9 bits (185), Expect = 3e-13
Identities = 179/781 (22%), Positives = 252/781 (31%), Gaps = 214/781 (27%)
Query: 305 TSIFPGSTDTPTKPTVSKNISFGNTKLDLFNNDKQ--KLT----APSQDSEELPRKKKEF 358
TS ST P+KP + N + N+ KL AP +E+ P K +
Sbjct: 914 TSTATISTSAPSKPIILSNQVIKPADVPNTNSTGSVPKLVLGQPAPPAKTEQTPPKPIDK 973
Query: 359 SST---------EDTVKPF-PFTSSK---SLETSTEPSKPAFSFDAVKKNNTATANGGTK 405
E + KP P TSS+ S T + P+FSF + ++T T
Sbjct: 974 VPAAQADIPPKFELSTKPVTPATSSQPLISFGTPKSTAAPSFSFGSATNTTSSTIANITN 1033
Query: 406 ISDGAPSFTFGDLXX------------XXXXXXXXXXXXNP---------FEKSAPEPVE 444
+ P F+FG NP F + P+
Sbjct: 1034 TTTSKPIFSFGQTPANGPTVGGLSGFKTEAPATTSVSTTNPGTQVTSTTTFGVTPPKTTT 1093
Query: 445 NLAKD-------GLPKFSFTGADTTGISNIPTFSFGKSSE---------GKEIAKPAPS- 487
+A G P SF ADT G+ P FSFGKS+ G + A P+
Sbjct: 1094 TVAPTTTVSLNFGQPMPSFGAADT-GVK--PMFSFGKSNNLSSGTPTTNGSDAAAAKPAV 1150
Query: 488 FSFG---SQKDAGEPT-------------------NVSEMSKPMFSFNKGKX---XXXXX 522
FSFG +Q A PT N SE +KP N
Sbjct: 1151 FSFGGSTTQPAAAAPTPVFGSLSKPLGEGFASPGANKSETTKPSIFGNLDNGLGNAMKSS 1210
Query: 523 XXXXXXXXXNTPKP------------------LFQFGSSGSTEPAAKRPDGTKT----EA 560
PKP LF FG + +++ A P K A
Sbjct: 1211 TNVAATTAAELPKPFGFAATTTAAGGGSTATNLFSFGGTATSKAAEPAPASQKNLFGLNA 1270
Query: 561 PVLPSFSFGGKPVGN-DSSKNIEK---------------------------EKAKPFSFG 592
F+FGG G D S+N + +K+ P +FG
Sbjct: 1271 TTTTPFAFGGAAAGAADKSENKDNKPIAFAFGAGNNSAVANPSGVFSFGGTDKSAPPAFG 1330
Query: 593 QAS------------NTSAFSLNQQPSAD--NATEKQEAKNAVSTAVKPAFSFG----ST 634
+ NT FS Q+P+ + Q++ A KP F+ G +T
Sbjct: 1331 SGTTSVTSATATPTNNTFGFSTTQKPATPMFGSGSTQQSSTPAVAATKP-FTLGGGAPTT 1389
Query: 635 PAALPS------------DTT-----------PKEAAAPSFSFGTTKKPVQGDMXXXXXX 671
P+A P+ +TT P A+ PSF+FG G+
Sbjct: 1390 PSASPASGGFSFSAVATKNTTAPTAGTNLFGSPASASKPSFNFG-------GNTATQAAA 1442
Query: 672 XXXXXXXIQQPSIEKASNAIPSFASQNTSGQPVSGLKFDLTGFKNNNRQTTPT---PFSD 728
+ K ++ AS N G P +G+ F +NN PT +
Sbjct: 1443 AGSPAGGFSFATTTKKEDS----ASTNMFGSPNTGVVKPNFSFSSNNPTPAPTFGGFGAP 1498
Query: 729 SSNVGSARGSNPPVPFSFDNVVQPGNKISVXXXXXXXXXXXXXXXKXXXXXXXXXXXXXX 788
++ +A +N PF+F P
Sbjct: 1499 AAAAPTATSTNQSKPFAF-GASTPAAAPQPPLGGNLFANAVSATQNQTKPSGVFSFGAAK 1557
Query: 789 XXAFGTSSNQPNVPFSFGGSSASSTPQVPALGTGFGNSMQTNTFNPSAAANFNFGGQPSQ 848
A GT++ N PFSFGG+SA P ++ NT P F+FGG
Sbjct: 1558 STA-GTTAG--NAPFSFGGASAGGIASPP-------SNQGLNTAKP-----FSFGGAGGT 1602
Query: 849 SPSVVFGSQT---PQQNPSSIFSAGQQNPADIFNAQASTPQGGAPFPPQRKIAMPGRRRR 905
VFGS P NP+ F+ G +PA QA+ AP P R I RR +
Sbjct: 1603 PAPNVFGSPAPAPPASNPTGGFNFGGVSPAQ----QANAGNMFAPTPESRPIRKATRRLQ 1658
Query: 906 R 906
+
Sbjct: 1659 K 1659
>7293246 [YU] KOG4719 Nuclear pore complex protein
Length = 1836
Score = 73.2 bits (178), Expect = 2e-12
Identities = 116/501 (23%), Positives = 173/501 (34%), Gaps = 65/501 (12%)
Query: 445 NLAKDGLPKFSFTGADT---------TGISNIPT-----FSFGKSSEGKEIAKP----AP 486
N A +PKF F + T + PT F FG+S++GK++A AP
Sbjct: 1276 NSAASSVPKFRFGFSHVKEVVKPSVETTTTPAPTSAQFSFGFGQSNQGKDVADSKKTEAP 1335
Query: 487 -SFSFGSQKDAGEPTNVSEMSKPMFSFNKGKXXXXXXXXXXXXXXXNTPKPL---FQFGS 542
+F FG K EP VS + K P P+ F+ +
Sbjct: 1336 KTFMFGVSK-VEEPKTVS-----FGTGIKETTATSSTEATAPTPAAAAPAPVQFVFKAPT 1389
Query: 543 SGSTEPAAKRPDGTKTEAPVLPSFSFGGKPVGNDSSKNIEKEKAKP------FSF-GQAS 595
+ +T + T + AP L FSFG + S + A P FS+ G S
Sbjct: 1390 TATTASSLTTTISTTSNAPALGGFSFGAPSSSSTVSSSTTSTSANPAAVKPMFSWSGAGS 1449
Query: 596 NTSAFSLNQQPSADNATEK-QEAKNAVSTAVKPAFSFGSTPAAL--PSDTTPKEAAAPSF 652
S+ S +QQP A T + + V+T F TPA+ P+ T AA F
Sbjct: 1450 AVSSTSSSQQPVAKAPTLGFGVSSSTVTTTTTSTKVFAFTPASGLDPAAATSAPAAGAGF 1509
Query: 653 SFGTTKKPVQGDMXXXXXXXXXXXXXIQQPSIEKASNAIPSFASQNTSGQPVSGLKFDLT 712
SFG+ KP P+ S+ + A+ T+ VS T
Sbjct: 1510 SFGSQSKPATTQNTGTFFFGQPTAVAPATPTNPSVSSIFGAPATSTTASTSVSATTSTST 1569
Query: 713 G---------------FKN-NNRQTTPTPFSDSSNVGSARGSNPPVPFSFDNVVQPGNKI 756
F N ++T T F SS GS + P +S + N
Sbjct: 1570 ANAIASSFAPTSTPQLFGNWGEKKTDLTTFGASS--GSGTTTTPSFGWSSNGDAAKSNSA 1627
Query: 757 SVXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXXAFGTSSNQPNVPFSFGGSSASSTPQV 816
+V TS++ ++PF GS+A++
Sbjct: 1628 AVGSAAVPSSSASTMATPIFGSSSMFGPSSSSNNT--TSTSTTSLPF---GSAATTAATT 1682
Query: 817 PALGTGFGNSMQTNTFNPSAAANFNFGGQPSQSPSV----VFGSQTPQQNPSSIFSAGQQ 872
PA G + N N A P+ + + +FG+ TP + +F +G
Sbjct: 1683 PAGGNAALTGLFGNVGNSLAGVGAPVATTPAATAAAPLTNIFGNPTPVAAAAPVFGSGST 1742
Query: 873 NPADIFNAQASTPQGGAPFPP 893
P+ F A A+ AP P
Sbjct: 1743 IPSAGFGAPAAAAPLAAPALP 1763
Score = 64.7 bits (156), Expect = 6e-10
Identities = 141/608 (23%), Positives = 200/608 (32%), Gaps = 112/608 (18%)
Query: 342 TAPSQDSEELPRKKKEFSSTEDTVKPFPFTSSKSLETSTEPSKPA--FSF---------- 389
T + + +P+ + FS ++ VKP S+ET+T P+ + FSF
Sbjct: 1273 TTANSAASSVPKFRFGFSHVKEVVKP-------SVETTTTPAPTSAQFSFGFGQSNQGKD 1325
Query: 390 --DAVKKNNTATANGGTKISDGAPSFTFGDLXXXXXXXXXXXXXXNPFEKSAPEPVENLA 447
D+ K T G + + +FG +AP PV+ +
Sbjct: 1326 VADSKKTEAPKTFMFGVSKVEEPKTVSFGTGIKETTATSSTEATAPTPAAAAPAPVQFVF 1385
Query: 448 KDGLPKFSFTGADTT--GISNIPT---FSFGKSSEGKEIAKPAPSFSFGSQKDAGEPTNV 502
K + + TT SN P FSFG S ++ S S P V
Sbjct: 1386 KAPTTATTASSLTTTISTTSNAPALGGFSFGAPSSSSTVSSSTTSTS-------ANPAAV 1438
Query: 503 SEMSKPMFSFNKGKXXXXXXXXXXXXXXXNTPKPLFQFGSSGST-------------EPA 549
KPMFS++ P FG S ST PA
Sbjct: 1439 ----KPMFSWSGAGSAVSSTSSSQQPVAK---APTLGFGVSSSTVTTTTTSTKVFAFTPA 1491
Query: 550 AKRPDGTKTEAPVLPS-FSFGGKPVGNDSSKNIEKEKAKPFSFGQAS--------NTSAF 600
+ T AP + FSFG + SK + F FGQ + N S
Sbjct: 1492 SGLDPAAATSAPAAGAGFSFGSQ------SKPATTQNTGTFFFGQPTAVAPATPTNPSVS 1545
Query: 601 SLNQQPSADN-ATEKQEAKNAVSTAVKPAFSFG--STPAALPS---DTTPKEAAAPSFSF 654
S+ P+ A+ A + STA A SF STP + T S
Sbjct: 1546 SIFGAPATSTTASTSVSATTSTSTANAIASSFAPTSTPQLFGNWGEKKTDLTTFGASSGS 1605
Query: 655 GTTKKPVQGDMXXXXXXXXXXXXXIQQPSIEKASNAIPSFASQNTSGQPVSGLK--FDLT 712
GTT P G + S S A+PS +S +T P+ G F +
Sbjct: 1606 GTTTTPSFG--------WSSNGDAAKSNSAAVGSAAVPS-SSASTMATPIFGSSSMFGPS 1656
Query: 713 GFKNNNRQTTPT--PFSDSSNVGSAR--GSNPPVPFSFDNVVQPGNKISVXXXXXXXXXX 768
NN T+ T PF ++ + G N + F NV GN ++
Sbjct: 1657 SSSNNTTSTSTTSLPFGSAATTAATTPAGGNAALTGLFGNV---GNSLAGVGAPVATTPA 1713
Query: 769 XXXXXKXXXXXXXXXXXXXXXXAFGTSSNQPNVPFSFGGSSASSTPQVPALGTGFGNSMQ 828
FG+ S P+ FG +A++ PAL F
Sbjct: 1714 ATAAAPLTNIFGNPTPVAAAAPVFGSGSTIPSA--GFGAPAAAAPLAAPALPGAFNFGGA 1771
Query: 829 TNTFNPSAAANFNFGGQPSQSPSVVFGSQTPQQNPSSIF---SAGQQNPADIFNAQAST- 884
T +++A F FG ++ P PS F +A PA FN A+T
Sbjct: 1772 TAATPAASSAPFVFGSSTNE----------PLAKPSFNFTGSAASSTAPAPAFNFTANTA 1821
Query: 885 ----PQGG 888
P GG
Sbjct: 1822 ATNNPSGG 1829
>SPAC26A3.15c [Y] KOG2196 Nuclear porin
Length = 598
Score = 58.5 bits (140), Expect = 4e-08
Identities = 112/456 (24%), Positives = 150/456 (32%), Gaps = 105/456 (23%)
Query: 304 STSIFPGSTDTPTKPTVSKNISFGNTKLDLFNNDKQKLTAPSQDSEELPRKKKEFSSTED 363
+T +F G+T+ T T FG+ N+ +APS S S+
Sbjct: 33 ATGLF-GNTNNNTSSTAPSGGLFGS-------NNASNTSAPSTFSFGKAATTGN-STNAS 83
Query: 364 TVKPFPFTSSKSLETSTEPSKPAF----------SFDAVKKNNTATANGGTKISDGAPSF 413
T PF F S+ + +T +KP F S KN ++A G + +F
Sbjct: 84 TSSPFSFGSTNT--NNTAGAKPLFGGLGSTGSANSTGDKSKNTASSATGAATTNPSGSTF 141
Query: 414 TFGDLXXXXXXXXXXXXXXNPFEKSAPEPVENLAKDGLPKFSFTG------ADTTGISNI 467
FG N F P N P + TG A T SN
Sbjct: 142 NFGS-------------SNNSFNFGKPASTTNTTT---PAAASTGSLFGKPAATGTTSNA 185
Query: 468 PTFSFGKSSEGKEIAKPAPSFSFGSQKDAGEPTNVSEMSKPMFSFNKGKXXXXXXXXXXX 527
P SS A + FSFG G N S + F+ GK
Sbjct: 186 PP----ASSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANSGFSFGKPATTSAPGSNT 241
Query: 528 XXXXNTPKPLFQFGSSGSTEPAAKRPDGTKTEAPVLPSFSFGGKPVGNDSSKNIEKEKAK 587
TP SS T +P + T + FSFG KP G +S +K
Sbjct: 242 TV---TP-------SSSITGTNDSKPAASNTGSAPTTGFSFG-KPAGQAASTATDKGTTT 290
Query: 588 PFSFGQASNTSAFSLNQQPSADNATEKQEAKNAVSTAVKPAFSFGSTPAALPSDTTPKEA 647
S G + FS + P+ T K A N+ T KPA S G
Sbjct: 291 TSSAG-----TGFSFGK-PATTEDTNKPTAPNSAFT--KPATSTGDNK------------ 330
Query: 648 AAPSFSFGTTKKPVQGDMXXXXXXXXXXXXXIQQPSIEKASNAIPSFASQNTSGQPVSGL 707
P+FSFG T KP + A++A P S NT +P G
Sbjct: 331 --PTFSFGNTSKPTENTSTT-------------------ATSAPP--LSNNT--KPAEGA 365
Query: 708 KFDLTGFKNNNRQTTPTPFSDSSNVGSARGSNPPVP 743
+GF T T + +S G G+ P P
Sbjct: 366 NQTSSGFSFGKPATDTT--TSTSKTGPLFGNKPADP 399
Score = 53.5 bits (127), Expect = 1e-06
Identities = 77/274 (28%), Positives = 96/274 (34%), Gaps = 54/274 (19%)
Query: 304 STSIFPGSTDTPTKP-TVSKNISFGN-TKLDLFNNDKQKLTAPSQDSEELPRKKKEFSST 361
+TS P ++ T T P T S SFG L NN TA S S P S
Sbjct: 181 TTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANSGFSFGKPATTSAPGSN 240
Query: 362 EDTVKPFPFTSSKSLETSTEPSKPA-----------FSFD--AVKKNNTATANGGTKISD 408
TV P S T T SKPA FSF A + +TAT G T S
Sbjct: 241 T-TVTP------SSSITGTNDSKPAASNTGSAPTTGFSFGKPAGQAASTATDKGTTTTSS 293
Query: 409 GAPSFTFGDLXXXXXXXXXXXXXXNPFEKSAPEPVENLAKDGLPKFSFTGADTTGISNIP 468
F+FG P E+ K P +FT T+ N P
Sbjct: 294 AGTGFSFGK----------------------PATTEDTNKPTAPNSAFTKPATSTGDNKP 331
Query: 469 TFSFGKSSEGKE----IAKPAPSFSFGSQKDAGEPTNVSEMSKPMFSFNKGKXXXXXXXX 524
TFSFG +S+ E A AP S + +P + + FSF K
Sbjct: 332 TFSFGNTSKPTENTSTTATSAPPLSNNT-----KPAEGANQTSSGFSFGKPATDTTTSTS 386
Query: 525 XXXXXXXNTP-KPLFQFGSSGSTEPAAKRPDGTK 557
N P P + G++ ST P+ P K
Sbjct: 387 KTGPLFGNKPADPSAKPGATASTTPSEPPPSSIK 420
>At1g59660 [YU] KOG0845 Nuclear pore complex Nup98 component (sc
Nup145/Nup100/Nup116)
Length = 997
Score = 53.1 bits (126), Expect = 2e-06
Identities = 113/481 (23%), Positives = 162/481 (33%), Gaps = 52/481 (10%)
Query: 435 FEKSAPE--PVENLAKDGLPKFSFTGADTTGISNIPTFSFGKSSEGKEIAKPAPSFSFGS 492
F S P+ P + + P F G T G S FG S+ A P+F +
Sbjct: 116 FGLSTPQSSPFGSTTQQSQPAF---GNSTFGSST----PFGASTTPAFGASSTPAFGVSN 168
Query: 493 QKDAGEPTNVSEMSKPMFSFNKGKXXXXXXXXXXXXXXXNTPKPLFQFGSSGSTEPAAKR 552
G + F NTP FG+S + P
Sbjct: 169 TSGFGATNTPGFGATNTTGFGGSSTPGFGASSTPAFGSTNTPA----FGASST--PLFGS 222
Query: 553 PDGTKTEAPVLPSFSFGGKPVGND--SSKNIEKEKAKPFSFGQASNTSAFSLNQQPSADN 610
A P+F G GN+ SS + P +FG ASNTSAF + PS +
Sbjct: 223 SSSPAFGASPAPAFGSSGNAFGNNTFSSGGAFGSSSTP-TFG-ASNTSAFGASSSPSFNF 280
Query: 611 ATEKQEAKNAVSTAVKPAFSFGSTPAALPSDTTP-----KEAAAPSFSFGTTKKPVQGDM 665
+ + ST+ + SFGST ++L S +P +A+ +F +T QG
Sbjct: 281 GSSPAFGQ---STSAFGSSSFGSTQSSLGSTPSPFGAQGAQASTSTFGGQSTIGGQQGGS 337
Query: 666 XXXXXXXXXXXXXIQQPSIEKASN--AIPSFASQNTS-------------GQPVSGLKFD 710
+ E+ + A+P+ +N GQ +G +
Sbjct: 338 RVIPYAPTTDTASGTESKSERLQSISAMPAHKGKNMEELRWEDYQRGDKGGQRSTGQSPE 397
Query: 711 LTGFKNNNRQTTPTPFSDSSNVGSARGSNPPVPFSFDNVVQPGNKISVXXXXXXXXXXXX 770
GF N Q P+ FS +S S NP PFS N
Sbjct: 398 GAGFGVTNSQ--PSIFS-TSPAFSQTPVNPTNPFSQTTPTSNTNFSPSFSQPTTPSFGQP 454
Query: 771 XXXKXXXXXXXXXXXXXXXXAFGTSSNQPNVPFSFGGSSASSTPQVPALGTGFGNSMQTN 830
+ T+++QP FG + A + ++G GF NS +
Sbjct: 455 TTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGSTPGFSIG-GFNNSQSSP 513
Query: 831 TF--NPSAAANFNFGGQPSQSPSVVFG-SQTPQQNPSSIFSAGQQNPADIFNAQASTPQG 887
F NPS A N S +FG + TP SS NPA + + STP
Sbjct: 514 LFGSNPSFAQNTT---PAFSQTSPLFGQNTTPALGQSSSVFGQNTNPALVQSNTFSTPST 570
Query: 888 G 888
G
Sbjct: 571 G 571
>CE05198 [YU] KOG3630 Nuclear pore complex Nup214/CAN component
Length = 1390
Score = 52.8 bits (125), Expect = 2e-06
Identities = 139/647 (21%), Positives = 215/647 (32%), Gaps = 90/647 (13%)
Query: 146 LTDGKNATIKNLLVNKLQSD---KKNHRVSDNPKSKKWKADFQYDLSEYDILKN------ 196
LTD ++ ++ LVN++Q K + + ++ K + A + DL + L N
Sbjct: 784 LTDAESIKVRQALVNQIQKRGIVKTRNVIVESYKKSENSAAMKNDLLDTSNLSNAILKLS 843
Query: 197 --DKKTKPVSASMGNLESPKLPHPLLKRSTSS------KKHVNTFDQTGVPSGSGLTDVQ 248
++ P S+ SP P +T + K V T + P S V
Sbjct: 844 MTPRRVMPSSSLFS--ASPSTPSTKSDAATQADEPPIVKTVVVTVESPAKPIASAPA-VS 900
Query: 249 SRLLQ-----GKTLQKNPKIA--QEVVAPTLSLKPIVKEKISEDKVLNANGPSVGFDFMN 301
S L++ T PK+ +E T KPI+ S
Sbjct: 901 SPLIKLNTTTATTTMTTPKVTVPKEEANKTQDQKPIISTPASSSIF-------------- 946
Query: 302 RDSTSIFPGSTDTPTKPTVSKNISFG-----NTKLDLFNNDKQKLTAPSQD---SEELPR 353
S S+F T TP ++ G N+ L + + +K ++ + +EE+
Sbjct: 947 -SSGSLFGTKTQTPLVSKEESTLTTGVPSLINSSLSISPQEIEKASSKVETLNKTEEVKD 1005
Query: 354 KKKEFSSTEDTVKPFPFTSSKSLETST-EPSKPAFSFDAVKKNNTATANGGTKISDGAPS 412
+K E T D P KSLET E KPA VK+ T G+ I PS
Sbjct: 1006 EKSENEVTPDLKSEEP----KSLETKVKEEPKPAVQ-TPVKEEET-----GSNIQK-TPS 1054
Query: 413 FTFGDLXXXXXXXXXXXXXXNPFEKSAPEPVENLAKDGLPKFSFTGADTTGISNIPTFSF 472
F+F + P + G + T A T SN +
Sbjct: 1055 FSFNSTTTPKSTSSTSSIFGGGLKTQTPSSSNSTNIFGAR--TTTTATPTPASNTSSIFG 1112
Query: 473 GKSSEGKEIAKPAPSFSFGSQKDAGEPTNVSEMSKPMFSFNKGKXXXXXXXXXXXXXXXN 532
G S K + P SF + A + + FSFN G
Sbjct: 1113 GGS---KAASSPFGSFGQAGCQPAKTSNPATSTASVTFSFNTGATSASAKPAGFGSFGAG 1169
Query: 533 -TPKPLFQFGSSGSTEPAAKRPDGTKTEAPVLPSFSFGGKP-VGNDSSKNIEKEKAKPFS 590
+ KP FG S + DG + ++ S G +GN + N PF+
Sbjct: 1170 ASAKPSSVFGGSVTAPTVPNVDDGMEDDSMANGGGSGGFMSGLGNARTSNTSGGN-NPFA 1228
Query: 591 FGQASNTSAFSLNQQPSADNATEKQEAKNAVSTAVKPAFSFGSTPAALPSDTTPKEAAAP 650
++ TSA S + ++Q+ + KP+FSF + ++ + P +
Sbjct: 1229 PKTSTGTSASSSSWLFGGGGNQQQQQQQ-------KPSFSFNTAGSSAQQASAPATGTSS 1281
Query: 651 SFSFGTTKKPVQGDMXXXXXXXXXXXXXIQQPSI------EKASNAIPSFASQNTSGQPV 704
F G K Q + SI +N +Q SGQ
Sbjct: 1282 VFG-GAPKFGSQPAFGAKPFGGGANAGLSKNASIFGGATSSTTNNPATGGFAQFASGQKT 1340
Query: 705 SGL------KFDLTGFKNNNRQTTPTPFSDSSNVGSARGSNPPVPFS 745
S L T TTP P S G++ +N P F+
Sbjct: 1341 SSLFGGGATPQTNTSIFGGGANTTPAPTSSVFGGGASANANKPTSFT 1387
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.307 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,487,094
Number of Sequences: 60738
Number of extensions: 2567852
Number of successful extensions: 7400
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7148
Number of HSP's gapped (non-prelim): 54
length of query: 907
length of database: 30,389,216
effective HSP length: 116
effective length of query: 791
effective length of database: 23,343,608
effective search space: 18464793928
effective search space used: 18464793928
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)