ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII3280  suspect: LH   J     KOG3320  Translation, ribosomal structure and biogenesis                40S ribosomal protein S7

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII3280 1154808 1154548 -87  
         (87 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YOR096w [J] KOG3320 40S ribosomal protein S7                           85   2e-17
YNL096c [J] KOG3320 40S ribosomal protein S7                           75   1e-14

>YOR096w [J] KOG3320 40S ribosomal protein S7
          Length = 190

 Score = 84.7 bits (208), Expect = 2e-17
 Identities = 42/49 (85%), Positives = 47/49 (95%)

Query: 1  MSDPQAKILSQAPTELELQVAQAFIDLENNSPELKADLRALQFKSIREV 49
          MS PQAKILSQAPTELELQVAQAF++LEN+SPELKA+LR LQFKSIRE+
Sbjct: 1  MSAPQAKILSQAPTELELQVAQAFVELENSSPELKAELRPLQFKSIREI 49


>YNL096c [J] KOG3320 40S ribosomal protein S7
          Length = 190

 Score = 75.5 bits (184), Expect = 1e-14
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 1  MSDPQAKILSQAPTELELQVAQAFIDLENNSPELKADLRALQFKSIREV 49
          MS  Q+KILSQAP+ELELQVA+ FIDLE++SPELKADLR LQ KSIRE+
Sbjct: 1  MSSVQSKILSQAPSELELQVAKTFIDLESSSPELKADLRPLQIKSIREI 49


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,582,820
Number of Sequences: 60738
Number of extensions: 142420
Number of successful extensions: 520
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 2
length of query: 87
length of database: 30,389,216
effective HSP length: 63
effective length of query: 24
effective length of database: 26,562,722
effective search space: 637505328
effective search space used: 637505328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)