ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3555 check: MH A KOG0131 RNA processing and modification Splicing factor 3b, subunit 4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3555 1252159 1251551 -203
(203 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR319w [A] KOG0131 Splicing factor 3b subunit 4 176 1e-44
CE24791 [A] KOG0131 Splicing factor 3b subunit 4 133 2e-31
Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4 127 8e-30
7290689 [A] KOG0131 Splicing factor 3b subunit 4 127 1e-29
At2g18510 [A] KOG0131 Splicing factor 3b subunit 4 120 2e-27
SPAC31G5.01 [A] KOG0131 Splicing factor 3b subunit 4 95 7e-20
At2g14550 [A] KOG0131 Splicing factor 3b subunit 4 86 3e-17
Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 75 8e-14
Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 71 1e-12
Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 70 3e-12
At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 70 3e-12
SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM sup... 69 6e-12
CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 68 7e-12
Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 66 3e-11
Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 66 3e-11
Hs9994185 [R] KOG4454 RNA binding protein (RRM superfamily) 65 6e-11
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 65 8e-11
At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 65 8e-11
Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 63 3e-10
At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 63 3e-10
CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 62 5e-10
CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 62 5e-10
At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 62 7e-10
YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 59 6e-09
YNL016w [R] KOG0118 FOG: RRM domain 58 8e-09
7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfam... 57 2e-08
Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 56 3e-08
At3g14100 [R] KOG0118 FOG: RRM domain 54 2e-07
7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 54 2e-07
At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 53 3e-07
At1g54080 [R] KOG0118 FOG: RRM domain 50 2e-06
ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM super... 49 6e-06
At4g24770 [R] KOG0118 FOG: RRM domain 48 8e-06
At1g34140 [R] KOG0118 FOG: RRM domain 48 8e-06
>YOR319w [A] KOG0131 Splicing factor 3b subunit 4
Length = 213
Score = 176 bits (447), Expect = 1e-44
Identities = 93/204 (45%), Positives = 131/204 (63%), Gaps = 13/204 (6%)
Query: 3 NTVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDY 61
NTVYVGN+D R+ K LYELF+Q P+ IK+PK+K + + YAFI+F N D Y
Sbjct: 9 NTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQ---AYQGYAFIEFYNQGDAQY 65
Query: 62 VCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVG---------AKLFVKNLDESIDVPQLS 112
K+ +N V LY + +KVR+ TT+ AKLF+KNL +SID QL
Sbjct: 66 AIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLV 125
Query: 113 NIFKIFGKLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYK 172
IF FGKL+R+PE+FYL NG L+CAYV+F F+ +D A++ LN +AN I +DYA+K
Sbjct: 126 KIFNKFGKLIREPEIFYLSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFK 185
Query: 173 DDMQKTAKHGDEIERLLDAERQKN 196
++ + AK+GD+++RLL+ E K+
Sbjct: 186 ENGKGNAKYGDDVDRLLNKEALKH 209
>CE24791 [A] KOG0131 Splicing factor 3b subunit 4
Length = 389
Score = 133 bits (334), Expect = 2e-31
Identities = 77/200 (38%), Positives = 122/200 (60%), Gaps = 11/200 (5%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFV-NDDVDYV 62
T+YVG LD +V++S+L+EL VQAGP+ + PK D + H + F++F+ +D DY
Sbjct: 24 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPK---DRVTANHQGFGFVEFMGEEDADYA 80
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
K+ N + LYGKP+KV +++ + + DVGA +FV NLD +D L + F FG +L
Sbjct: 81 IKIL-NMIKLYGKPIKVNKASAHEK--NMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 137
Query: 123 RKPEVFY-LQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAK 180
+ P++ + +GT + A++ F +F+ SD AL+ +N L N+ I + YA+K D K +
Sbjct: 138 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRD-SKGER 196
Query: 181 HGDEIERLLDAERQKNYPKD 200
HG ER+L A+ +PKD
Sbjct: 197 HGTAAERMLAAQNPL-FPKD 215
>Hs5032069 [A] KOG0131 Splicing factor 3b subunit 4
Length = 424
Score = 127 bits (320), Expect = 8e-30
Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 10/192 (5%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVN-DDVDYV 62
TVYVG LD +V++ LL+ELF+QAGP+ PK D QH Y F++F++ +D DY
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPK---DRVTGQHQGYGFVEFLSEEDADYA 70
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
K+ N + LYGKP++V +++ + DVGA +F+ NLD ID L + F FG +L
Sbjct: 71 IKIM-NMIKLYGKPIRVNKAS--AHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 123 RKPEVFYLQN--GTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAK 180
+ P++ + + A++ F +F SD A++ +N L N+ I + YA+K D K +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD-SKGER 186
Query: 181 HGDEIERLLDAE 192
HG ERLL A+
Sbjct: 187 HGSAAERLLAAQ 198
>7290689 [A] KOG0131 Splicing factor 3b subunit 4
Length = 347
Score = 127 bits (318), Expect = 1e-29
Identities = 71/197 (36%), Positives = 118/197 (59%), Gaps = 10/197 (5%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVN-DDVDYV 62
T+Y G LD +V+++LL+ELFVQAGP+ + PK++ + H Y F++F++ +D DY
Sbjct: 14 TIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQ---MHQGYGFVEFLSEEDADYG 70
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
K+ N + LYGKP++V +++ + + DVGA +F+ NLD +D L + F FG +L
Sbjct: 71 IKIM-NMIKLYGKPIRVNKASAHQK--NLDVGANIFIGNLDVEVDEKLLYDTFSAFGVIL 127
Query: 123 RKPEVFY-LQNGTLRC-AYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAK 180
+ P++ + G + A++ F +F+ SD A+ +N L N+ I + YA+K D K +
Sbjct: 128 QTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKD-HKGER 186
Query: 181 HGDEIERLLDAERQKNY 197
HG ERLL A+ +
Sbjct: 187 HGSAAERLLAAQNPSTH 203
>At2g18510 [A] KOG0131 Splicing factor 3b subunit 4
Length = 363
Score = 120 bits (300), Expect = 2e-27
Identities = 74/201 (36%), Positives = 116/201 (56%), Gaps = 13/201 (6%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKF-VNDDVDYV 62
TVYVG LD+++++ LL+ELFVQAGP+ + PK D + H Y FI++ +D DY
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPK---DRVTNLHQNYGFIEYRSEEDADYA 82
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
K+ N + L+GKP++V ++++ ++ DVGA LF+ NLD +D L + F FG +
Sbjct: 83 IKVL-NMIKLHGKPIRVNKASQDKKS--LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIA 139
Query: 123 RKPEVFY-LQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAK 180
P++ G R ++ + +F+ SD A++ + L+N+ I + YAYK D K +
Sbjct: 140 SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKD-TKGER 198
Query: 181 HGDEIERLLDAER---QKNYP 198
HG ERLL A QK+ P
Sbjct: 199 HGTPAERLLAATNPTAQKSRP 219
>SPAC31G5.01 [A] KOG0131 Splicing factor 3b subunit 4
Length = 139
Score = 94.7 bits (234), Expect = 7e-20
Identities = 51/131 (38%), Positives = 84/131 (63%), Gaps = 6/131 (4%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
T+Y+GNLD +V S+L+EL +QAGP+ I P+ D + H+ + F +F+++ DV+Y
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPR---DRVRNSHNGFGFCEFLHEQDVEYA 68
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
C++ N+V L+GKP++V R++ Q + +GA LFV NLD +D L + F G+L+
Sbjct: 69 CQIL-NQVKLFGKPIRVNRAS-QDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 123 RKPEVFYLQNG 133
+ P+V +NG
Sbjct: 127 KAPQVARDENG 137
>At2g14550 [A] KOG0131 Splicing factor 3b subunit 4
Length = 314
Score = 86.3 bits (212), Expect = 3e-17
Identities = 54/155 (34%), Positives = 91/155 (57%), Gaps = 8/155 (5%)
Query: 48 KYAFIKFVND-DVDYVCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDE-S 105
K+ F++F N+ D DY K+F N + LYG+P++V+++++ ++ DVGA LF+ NLD +
Sbjct: 39 KFGFVQFHNEEDADYAIKVF-NMIKLYGEPIRVKKASQDKKS--LDVGANLFLGNLDPVN 95
Query: 106 IDVPQLSNIFKIFGKLLRKPEVFY-LQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANK 163
+D L + F FG + P++ G R ++ + +F+ SD A++ + L+N+
Sbjct: 96 VDEKMLHDTFSAFGVISDHPKIMRDPDTGNPRGFGFISYDSFEASDAAIEAMTGQYLSNR 155
Query: 164 LIYIDYAYKDDMQKTAKHGDEIERLLDAERQKNYP 198
I + YAYK D K +HG ERLL A Q++ P
Sbjct: 156 QITVTYAYKKD-TKGERHGTPEERLLAANSQRSRP 189
>Hs4504715 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 644
Score = 74.7 bits (182), Expect = 8e-14
Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 8/180 (4%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
++YVG+L S V +++LYE F AGP+ I+ + D + YA++ F D +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCR---DMITRRSLGYAYVNFQQPADAERA 68
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
+ V + GKP+++ S + P VG +F+KNLD+SID L + F FG +L
Sbjct: 69 LDTMNFDV-IKGKPIRIMWSQRDPSLRKSGVG-NVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAKHG 182
+V +NG+ A+V F T + +D+A++++N L ++ +++ +K ++ A+ G
Sbjct: 127 -SCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAELG 184
>Hs13569958 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 631
Score = 70.9 bits (172), Expect = 1e-12
Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVN-DDVDYV 62
++YVG+L V +++LYE F AGPI I+ + D S S YA++ F + D ++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICR---DLITSGSSNYAYVNFQHTKDAEHA 68
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
+ V + GKP+++ S + P VG +FVKNLD+SI+ L + FG +L
Sbjct: 69 LDTMNFDV-IKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKALYDTVSAFGNIL 126
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAKHG 182
V +NG+ +V F T + ++ A++++N L + +++ +K ++ A+ G
Sbjct: 127 -SCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVG-QFKSRKEREAELG 184
>Hs4505575 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 633
Score = 69.7 bits (169), Expect = 3e-12
Identities = 52/180 (28%), Positives = 95/180 (51%), Gaps = 8/180 (4%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
++YVG+L V +++LYE F AGPI I+ + D + YA++ F D +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR---DMITRRSLGYAYVNFQQPADAERA 68
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
+ V + GKP+++ S + P VG +F+KNLD+SID L + F FG +L
Sbjct: 69 LDTMNFDV-IKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAKHG 182
+V +NG+ +V F T + ++ A++++N L ++ +++ +K ++ A+ G
Sbjct: 127 -SCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG-RFKSRKEREAELG 184
>At4g34110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 629
Score = 69.7 bits (169), Expect = 3e-12
Identities = 47/168 (27%), Positives = 84/168 (49%), Gaps = 8/168 (4%)
Query: 2 SNTVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVN--DDV 59
+ ++YVG+LD V S L++ F Q G + ++ + D + Y ++ F N D
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCR---DLVTRRSLGYGYVNFTNPQDAA 91
Query: 60 DYVCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFG 119
+ +L N + LYGKP++V S++ P G +F+KNLDESID L + F FG
Sbjct: 92 RAIQEL--NYIPLYGKPIRVMYSHRDPSVRRSGAG-NIFIKNLDESIDHKALHDTFSSFG 148
Query: 120 KLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
++ + +V + + + +A+++LN L +K +Y+
Sbjct: 149 NIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 49.7 bits (117), Expect = 3e-06
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 31/191 (16%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVN-DDVDYVC 63
VYV NL L F + G I+ K+ + + + F+ F N DD
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKG----FGFVNFENADDAARAV 272
Query: 64 KL-----FDNRVSLYGKP---------LKVRRSNKQPETTDFDVGAKLFVKNLDESIDVP 109
+ FD++ G+ L+VR E D + L+VKNLD SI
Sbjct: 273 ESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDE 332
Query: 110 QLSNIFKIFG-----KLLRKPEVFYLQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANK 163
+L IF FG K++R P NGT + +V F T + + EA+ QL+ + +K
Sbjct: 333 KLKEIFSPFGTVTSSKVMRDP------NGTSKGSGFVAFATPEEATEAMSQLSGKMIESK 386
Query: 164 LIYIDYAYKDD 174
+Y+ A + +
Sbjct: 387 PLYVAIAQRKE 397
>SPAC57A7.04c [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 653
Score = 68.6 bits (166), Expect = 6e-12
Identities = 49/169 (28%), Positives = 85/169 (49%), Gaps = 6/169 (3%)
Query: 2 SNTVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDY 61
S ++YVG LD V +++L+ELF GP++ I+ + D + YA++ F N +
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCR---DAVTRRSLGYAYVNFHNMEDGE 135
Query: 62 VCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKL 121
N + G+P ++ S + P G +F+KNLD +ID L + F FGK+
Sbjct: 136 KALDELNYTLIKGRPCRIMWSQRDPSLRKMGTG-NVFIKNLDPAIDNKALHDTFSAFGKI 194
Query: 122 LR-KPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDY 169
L K V L N +V F + + ++ A++ +N L +K +Y+ +
Sbjct: 195 LSCKVAVDELGNAK-GYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Score = 61.2 bits (147), Expect = 9e-10
Identities = 47/205 (22%), Positives = 92/205 (43%), Gaps = 24/205 (11%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVCK 64
VY+ NLD+ + + +LF Q G I+ + K++ D+ + F+ + N +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRG----FGFVNYANHECAQKAV 318
Query: 65 LFDNRVSLYGKPLKVRRSNKQPETTD---------------FDVGAKLFVKNLDESIDVP 109
N GK L V R+ K+ E + G LF+KNL + +D
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 110 QLSNIFKIFGKLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDY 169
+L F FG + + Q + +V +TT + +++A+ ++N+ LA K +Y+
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 170 AYKDDMQKTAKHGDEIERLLDAERQ 194
A + +++++ ++E + A Q
Sbjct: 439 AQRKEVRRS-----QLEAQIQARNQ 458
>CE20412 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 646
Score = 68.2 bits (165), Expect = 7e-12
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
++YVG+L VN+S+L+E F AGP+ I+ + D YA++ F D +
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCR---DNATRLSLGYAYVNFQQPADAERA 89
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
N +L+GKP+++ S + P G +F+KNLD+ ID + + F +FG +L
Sbjct: 90 MDTM-NFEALHGKPMRIMWSQRDPAMRRSGAG-NIFIKNLDKVIDNKSIYDTFSLFGNIL 147
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
+ +V F T + + A+Q++N LA K +++
Sbjct: 148 SCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>Hs20559158 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 330
Score = 66.2 bits (160), Expect = 3e-11
Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 8/180 (4%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
++YVG+L V +++LYE F AGPI I+ + D + YA+I F D +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR---DVATRRSLGYAYINFQQPADAERA 68
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
N L G+P+++ S + P VG +F+KNL++SID L + F FG +L
Sbjct: 69 LDTM-NFEMLKGQPIRIMWSQRDPGLRKSGVG-NIFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAKHG 182
+V ++G+ +V F T + + +A+ +N L ++ +++ + +K ++ A+ G
Sbjct: 127 -SCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FKSRREREAELG 184
>Hs18201888 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 382
Score = 66.2 bits (160), Expect = 3e-11
Identities = 49/164 (29%), Positives = 80/164 (47%), Gaps = 7/164 (4%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKF-VNDDVDYVC 63
+YVG+LD V + +LY+ F AGP ++F + +D Y ++ F D ++
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGP---LRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 64 KLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLLR 123
N + GKP ++ S VG +F+KNLD+SID L +F FG +L
Sbjct: 77 NTM-NFDLINGKPFRLMWSQPDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFGNIL- 133
Query: 124 KPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
+V NG+ AYV F + ++ A+ +N L N+ +Y+
Sbjct: 134 SCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
Score = 49.3 bits (116), Expect = 4e-06
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSK-YAFIKFVNDDVDYVC 63
V+V N+ ++ L ELF + GP +K + D S SK + F+++ +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIR-----DASGKSKGFGFVRYETHEAAQKA 255
Query: 64 KLFDNRVSLYGKPLKVRRSNKQPETT---------------DFDVGAKLFVKNLDESIDV 108
L + S+ GK L V R+ K+ E G +++KNLDE+I+
Sbjct: 256 VLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIND 315
Query: 109 PQLSNIFKIFGKLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
+L F FG + R + + G V F++F+ + +A+ ++N + +K +++
Sbjct: 316 EKLKEEFSSFGSISRAKVMMEVGQGK-GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
>Hs9994185 [R] KOG4454 RNA binding protein (RRM superfamily)
Length = 266
Score = 65.1 bits (157), Expect = 6e-11
Identities = 32/78 (41%), Positives = 53/78 (67%), Gaps = 6/78 (7%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
T++VGNL+++V + LL+ELF QAGP+ +K PK+K D + ++AF+ F ++ V Y
Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK----DGKPKQFAFVNFKHEVSVPYA 66
Query: 63 CKLFDNRVSLYGKPLKVR 80
L N + LYG+P+K++
Sbjct: 67 MNLL-NGIKLYGRPIKIQ 83
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 64.7 bits (156), Expect = 8e-11
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 9/170 (5%)
Query: 2 SNTVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSK--YAFIKFVNDDV 59
++++YVG+LD VN+S L +LF Q P+ ++ + D H YA++ F N +
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCR------DLTHRSLGYAYVNFANPED 97
Query: 60 DYVCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFG 119
N + +P+++ SN+ P T G +F+KNLD SID L F FG
Sbjct: 98 ASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKG-NVFIKNLDASIDNKALYETFSSFG 156
Query: 120 KLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDY 169
+L + + +V F + + A+ +LN L +K +++ +
Sbjct: 157 TILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGH 206
>At1g22760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 660
Score = 64.7 bits (156), Expect = 8e-11
Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 5/168 (2%)
Query: 2 SNTVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDY 61
++++Y G+LD +V ++ L++LF + ++ +++ + + YA+I F N + Y
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ----NRRSLGYAYINFSNPNDAY 103
Query: 62 VCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKL 121
N L+ +P+++ SN+ P T G +F+KNLD SID L F FG +
Sbjct: 104 RAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG-NIFIKNLDASIDNKALFETFSSFGTI 162
Query: 122 LRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDY 169
L + + +V F + + A+ +LN + +K +++ +
Sbjct: 163 LSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGH 210
>Hs22058480 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 360
Score = 62.8 bits (151), Expect = 3e-10
Identities = 51/180 (28%), Positives = 90/180 (49%), Gaps = 8/180 (4%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVC 63
++YVG+L V +++LYE F AGPI I+ ++K + YA++ + VD
Sbjct: 163 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITR---RSLGYAYVNY-QQPVDAKR 218
Query: 64 KLFD-NRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
L N + G+P+++ S + P VG +F+KNL ++ID L NIF FG +L
Sbjct: 219 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG-NVFIKNLGKTIDNKALYNIFSAFGNIL 277
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAKHG 182
+V + G +V F + ++ A+ +N L + I++ +K ++ A+ G
Sbjct: 278 -SCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG-RFKSHKEREAERG 335
>At2g36660 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 609
Score = 62.8 bits (151), Expect = 3e-10
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 8/192 (4%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVC 63
++YVG+L V + +LY+ F + ++ ++ K D + Y + F++ +
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCK---DASSGRSLCYGYANFLSRQDANLA 81
Query: 64 KLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLLR 123
N L GK ++V S + P+ VG +FVKNL ES+ L ++FK FG ++
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIV- 139
Query: 124 KPEVFYLQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYK--DDMQKTAK 180
+V L++G R +V F + A+Q LN T +A+K IY+ K D ++ K
Sbjct: 140 SCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEK 199
Query: 181 HGDEIERLLDAE 192
+ + + LDA+
Sbjct: 200 YTNLYMKNLDAD 211
>CE03230 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 566
Score = 62.0 bits (149), Expect = 5e-10
Identities = 41/165 (24%), Positives = 82/165 (48%), Gaps = 6/165 (3%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
++Y+G+L V++++L+E F AGP+ I+ + D YA++ F D +
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCR---DNTSRLSLGYAYVNFQQPADAERA 114
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
+ V ++G+P+++ S + P G +F+KNLD ID + + F +FG +L
Sbjct: 115 LDTMNFEV-IHGRPMRIMWSQRDPAARRAGNG-NIFIKNLDRVIDNKSVYDTFSLFGNIL 172
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
+ + +V F T + A++++N L++K +Y+
Sbjct: 173 SCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>CE02193 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 692
Score = 62.0 bits (149), Expect = 5e-10
Identities = 41/165 (24%), Positives = 82/165 (48%), Gaps = 6/165 (3%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
++Y+G+L V++++L+E F AGP+ I+ + D YA++ F D +
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCR---DNTSRLSLGYAYVNFQQPADAERA 114
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
+ V ++G+P+++ S + P G +F+KNLD ID + + F +FG +L
Sbjct: 115 LDTMNFEV-IHGRPMRIMWSQRDPAARRAGNG-NIFIKNLDRVIDNKSVYDTFSLFGNIL 172
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
+ + +V F T + A++++N L++K +Y+
Sbjct: 173 SCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>At1g49760 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 704
Score = 61.6 bits (148), Expect = 7e-10
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 2 SNTVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDY 61
+ ++YVG+LD+ V S L+E F QAG + ++ + D + Y ++ +
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCR---DMTTRRSLGYGYVNYATPQDAS 100
Query: 62 VCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKL 121
N ++L G+ ++V S + P VG +F+KNLD+SID L F FG +
Sbjct: 101 RALNELNFMALNGRAIRVMYSVRDPSLRKSGVG-NIFIKNLDKSIDHKALHETFSAFGPI 159
Query: 122 LRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
L + +V + T + + A+ +LN L +K +Y+
Sbjct: 160 LSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 50.8 bits (120), Expect = 1e-06
Identities = 49/193 (25%), Positives = 85/193 (43%), Gaps = 29/193 (15%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDD-----V 59
VYV NL ++ L ++F + G + ++ + + + F+ F N D V
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG----FGFVNFENSDDAARAV 281
Query: 60 DYVC-KLFDNRVSLYGKP---------LKVRRSNKQPETTDFDVGAKLFVKNLDESIDVP 109
D + K FD++ GK LK + E D G+ L+VKNLDES+
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 110 QLSNIFKIFG-----KLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKL 164
+L F FG K++R P +G +V F+T + + A+ ++N + K
Sbjct: 342 KLREHFAPFGTITSCKVMRDPSGVSRGSG-----FVAFSTPEEATRAITEMNGKMIVTKP 396
Query: 165 IYIDYAYKDDMQK 177
+Y+ A + + +K
Sbjct: 397 LYVALAQRKEDRK 409
>YER165w [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 577
Score = 58.5 bits (140), Expect = 6e-09
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 30/211 (14%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVN--DDVDYV 62
+YV N++S ELF + GPI K+ D + + F+ + D V V
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA----DGKLKGFGFVNYEKHEDAVKAV 276
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETT-----DFDV----------GAKLFVKNLDESID 107
L D+ ++ G+ L V R+ K+ E ++ G LFVKNLD+S+D
Sbjct: 277 EALNDSELN--GEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVD 334
Query: 108 VPQLSNIFKIFGKLLRKPEVFYLQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANKLIY 166
+L F +G + +V +NG + +V F+T + + +A+ + N+ +A K +Y
Sbjct: 335 DEKLEEEFAPYG-TITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 167 IDYAYKDDMQKTAKHGDEIERLLDAERQKNY 197
+ A + D++++ ++ + + A Q Y
Sbjct: 394 VAIAQRKDVRRS-----QLAQQIQARNQMRY 419
Score = 51.2 bits (121), Expect = 9e-07
Identities = 43/167 (25%), Positives = 78/167 (45%), Gaps = 6/167 (3%)
Query: 2 SNTVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDY 61
S ++YVG+L+ V+++ LY++F G +S I+ + D YA++ F + +
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCR---DAITKTSLGYAYVNFNDHEAGR 93
Query: 62 VCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKL 121
N + G+ ++ S + P G +F+KNL ID L + F +FG +
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG-NIFIKNLHPDIDNKALYDTFSVFGDI 152
Query: 122 LRKPEVFYLQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
L ++ +NG + +V F + EA+ LN L + IY+
Sbjct: 153 L-SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>YNL016w [R] KOG0118 FOG: RRM domain
Length = 453
Score = 58.2 bits (139), Expect = 8e-09
Identities = 46/199 (23%), Positives = 94/199 (47%), Gaps = 16/199 (8%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVCK 64
+YVGNLD + + +L + F GPI+ IK +K ++++ YAF+++ +
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK----NNKNVNYAFVEYHQSHDANIAL 132
Query: 65 LFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLLRK 124
N + +K+ + + +++ D LFV +L+ ++D L N FK F L
Sbjct: 133 QTLNGKQIENNIVKINWAFQSQQSSSDDT-FNLFVGDLNVNVDDETLRNAFKDFPSYLSG 191
Query: 125 PEVFYLQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAKHGD 183
++ +Q G+ R +V FT+ + A+ + +L + + I++A K D +
Sbjct: 192 HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNY-- 249
Query: 184 EIERLLDAERQKNYPKDNK 202
++++NY +N+
Sbjct: 250 --------QQRRNYGNNNR 260
>7302665 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 634
Score = 56.6 bits (135), Expect = 2e-08
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVDYV 62
++YVG+L VN+S L++ F AGP+ I+ + D + YA++ F D +
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCR---DVITRRSLGYAYVNFQQPADAERA 59
Query: 63 CKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLL 122
N + KP+++ S + P VG +F+KNLD +ID + + F FG +L
Sbjct: 60 LDTM-NFDLVRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 123 RKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
+ + +V F T + ++ ++ ++N L K +Y+
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
Score = 51.6 bits (122), Expect = 7e-07
Identities = 47/200 (23%), Positives = 86/200 (42%), Gaps = 17/200 (8%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSK-YAFIKF-----VNDD 58
V++ NLD ++ +Y+ F G I K D+ +SK Y F+ F N
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT-----DEKGNSKGYGFVHFETEEAANTS 146
Query: 59 VDYVCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIF 118
+D V + N +Y R+ ++ + ++VKN E D +L F+ +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 119 GKLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLA-NKLIYIDYAYKDDMQK 177
GK+ + + +V F T + ++ A+Q LN ++ K +Y+ A QK
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA-----QK 261
Query: 178 TAKHGDEIERLLDAERQKNY 197
A+ E++R + +QK +
Sbjct: 262 KAERQQELKRKFEELKQKRH 281
>Hs17435151 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 487
Score = 56.2 bits (134), Expect = 3e-08
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVC 63
++YVG+L + V + LL+ F GP+ I+ + D+ + YA++ F+ +
Sbjct: 128 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICR---DQVTRRSLGYAYVNFLQ--LADAQ 182
Query: 64 KLFD--NRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKL 121
K D N + GK +++ S + +G +F+KNLD+SID L F FGK+
Sbjct: 183 KALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIG-NVFIKNLDKSIDNKTLYEHFSAFGKI 241
Query: 122 LRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYI 167
L +V G+ A+V F +D A++++N L +++
Sbjct: 242 L-SSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 286
Score = 50.8 bits (120), Expect = 1e-06
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 24/180 (13%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVD---- 60
V++ NLD ++ LYE F G K K DD YAF+ F N
Sbjct: 217 VFIKNLDKSIDNKTLYEHFSAFG-----KILSSKVMSDDQGSKGYAFVHFQNQSAADRAI 271
Query: 61 --------YVCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLS 112
CK+F R K K R + + + ++F +++KN +D +L
Sbjct: 272 EEMNGKLLKGCKVFVGRF----KNRKDREAELRSKASEF---TNVYIKNFGGDMDDERLK 324
Query: 113 NIFKIFGKLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYK 172
++F +GK L + + +V F + + + +A++++N ++ +LI++ A K
Sbjct: 325 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 384
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 53.5 bits (127), Expect = 2e-07
Identities = 42/172 (24%), Positives = 78/172 (44%), Gaps = 12/172 (6%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVC 63
+VYVGN+ ++V + LL E+F GP+ K ++ + S Y F+ + + +
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDK-------SSYGFVHYFDRRSAALA 112
Query: 64 KLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLLR 123
L N L+G+P+KV + + D +FV +L + L F +F
Sbjct: 113 ILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSD 172
Query: 124 KPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETN---LANKLIYIDYAYK 172
++ + G R F +F++ +A +NE N L+++ I ++A K
Sbjct: 173 ARVMWDQKTG--RSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATK 222
>7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 464
Score = 53.5 bits (127), Expect = 2e-07
Identities = 47/175 (26%), Positives = 77/175 (43%), Gaps = 19/175 (10%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVC 63
T+YVGNLDS V++ LL LF GP+ K +E ++ YAFI++ N
Sbjct: 8 TLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND------PYAFIEYSNYQAATTA 61
Query: 64 KLFDNRVSLYGKPLKVR---RSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFG- 119
N+ K +KV QP+ TD +FV +L I+ L F FG
Sbjct: 62 LTAMNKRLFLEKEIKVNWATSPGNQPK-TDISSHHHIFVGDLSPEIETETLREAFAPFGE 120
Query: 120 ----KLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYA 170
+++R P + A+V F ++ A+Q +N + ++ I +++
Sbjct: 121 ISNCRIVRDPHTMKSKG----YAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWS 171
>At2g23350 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 662
Score = 52.8 bits (125), Expect = 3e-07
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVC 63
++YVG+LD V S LY+ F + + ++ + D + Y ++ + N D
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCR---DAATNTSLGYGYVNYSNTDDAEKA 103
Query: 64 KLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLLR 123
N L GK +++ S++ VG LFVKNLD+S+D L F G ++
Sbjct: 104 MQKLNYSYLNGKMIRITYSSRDSSARRSGVG-NLFVKNLDKSVDNKTLHEAFSGCGTIVS 162
Query: 124 KPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTA 179
+ +V F T + A+++LN L +K I++ + + +++A
Sbjct: 163 CKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESA 218
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 50.1 bits (118), Expect = 2e-06
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 4 TVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVC 63
+VY GN+ ++V + LL E+F GPI K ++ + S Y F+ + + +
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDK-------SSYGFVHYFDRRCASMA 116
Query: 64 KLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGKLLR 123
+ N ++G+P+KV + + D +FV +L + L + F F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSD 176
Query: 124 KPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETN---LANKLIYIDYAYKDDMQKTAK 180
++ + G R F +F++ +A +NE N ++++ I ++A K K
Sbjct: 177 ARVMWDQKTG--RSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDK 234
Query: 181 HGDE 184
H +
Sbjct: 235 HSSD 238
>ECU10g1110 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 502
Score = 48.5 bits (114), Expect = 6e-06
Identities = 32/122 (26%), Positives = 60/122 (48%), Gaps = 12/122 (9%)
Query: 2 SNTVYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVND-DVD 60
S T+YVG L + S L+ +F G + +K K + S +AF+ F N+ D +
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPV-----SSFAFVTFENEEDAE 67
Query: 61 YVCKLFDNRVSLYGKPLKVRRSNKQPETTDFDVGAKLFVKNLDESIDVPQLSNIFKIFGK 120
+ + + L+ + ++V + +++P T +FVKNL E L + F +FG+
Sbjct: 68 RAIREYKH-YELHNRQIRVMKKDERPPET-----GNIFVKNLPEDFTGKDLDDAFSMFGE 121
Query: 121 LL 122
++
Sbjct: 122 IV 123
>At4g24770 [R] KOG0118 FOG: RRM domain
Length = 329
Score = 48.1 bits (113), Expect = 8e-06
Identities = 43/173 (24%), Positives = 80/173 (45%), Gaps = 11/173 (6%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVN-DDVDYVC 63
++VGNL VN L LF QAG + + ++ + Q + F+ + D+ +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETD---QSRGFGFVTMSSVDEAETAV 208
Query: 64 KLFDNRVSLYGKPLKVRRS---NKQPETTD--FDVGAKLFVKNLDESIDVPQLSNIFKIF 118
+ F NR L G+ L V ++ +PE ++ +++V NL +D +L +F
Sbjct: 209 EKF-NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEH 267
Query: 119 GKLLRKPEVFYLQNGTLR-CAYVWFTTFKHSDEALQQLNETNLANKLIYIDYA 170
GK++ V+ + G R +V + +EA+ L+ NL + I ++ A
Sbjct: 268 GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>At1g34140 [R] KOG0118 FOG: RRM domain
Length = 398
Score = 48.1 bits (113), Expect = 8e-06
Identities = 45/189 (23%), Positives = 80/189 (41%), Gaps = 29/189 (15%)
Query: 5 VYVGNLDSRVNKSLLYELFVQAGPISYIKFPKEKQDEDDSQHSKYAFIKFVNDDVDYVCK 64
VYV NL + L LF + G I+ K+ + + ++ F+ F +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD----GEGKSRRFGFVNFEKAEAAVTAI 176
Query: 65 LFDNRVSLYGKPLKVRRSNKQPETTD-----FDV-----------GAKLFVKNLDESIDV 108
N V + K L V R+ ++ T+ F++ G L+VKNLD+S+D
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 109 PQLSNIFKIFGKLLRKPEVFYLQNGTLRCAYVWFTTFKHSDEALQQLNETNLANKLIYID 168
+L +F FG + + +V F+T + + +A+ ++N + NK IY+
Sbjct: 237 TKLEELFSEFGT---------ITSCNKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 287
Query: 169 YAYKDDMQK 177
A + K
Sbjct: 288 LAQCKEQHK 296
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,801,206
Number of Sequences: 60738
Number of extensions: 549773
Number of successful extensions: 2229
Number of sequences better than 1.0e-05: 34
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2098
Number of HSP's gapped (non-prelim): 78
length of query: 203
length of database: 30,389,216
effective HSP length: 101
effective length of query: 102
effective length of database: 24,254,678
effective search space: 2473977156
effective search space used: 2473977156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)