ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII3562 good T KOG0788 Signal transduction mechanisms S-adenosylmethionine decarboxylase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII3562 1254045 1255145 367
(367 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL052c [T] KOG0788 S-adenosylmethionine decarboxylase 329 3e-90
SPBP4H10.05c [T] KOG0788 S-adenosylmethionine decarboxylase 192 7e-49
Hs4502069 [T] KOG0788 S-adenosylmethionine decarboxylase 159 8e-39
7297665 [T] KOG0788 S-adenosylmethionine decarboxylase 155 7e-38
CE18705 [T] KOG0788 S-adenosylmethionine decarboxylase 137 3e-32
At3g02470 [T] KOG0788 S-adenosylmethionine decarboxylase 124 2e-28
At5g15950 [T] KOG0788 S-adenosylmethionine decarboxylase 121 2e-27
At3g25570 [T] KOG0788 S-adenosylmethionine decarboxylase 111 2e-24
At5g18930 [T] KOG0788 S-adenosylmethionine decarboxylase 96 1e-19
>YOL052c [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 396
Score = 329 bits (844), Expect = 3e-90
Identities = 171/378 (45%), Positives = 239/378 (62%), Gaps = 18/378 (4%)
Query: 2 VEETNAFEGPEKLLEIWFYPKKTEVPHAERSLRSIDHSKWKELLELVKCEILSTFSTDDM 61
++ T+AFEGPEKLLEIWF+P K + E++LR+I +W E+L+LVKCE+LS T ++
Sbjct: 22 LDSTDAFEGPEKLLEIWFFPHKKSIT-TEKTLRNIGMDRWIEILKLVKCEVLSMKKTKEL 80
Query: 62 DCFLLSESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNHP 121
D FLLSESS+FVFDH F+++ EL W FR G+ K P
Sbjct: 81 DAFLLSESSLFVFDHKLTMKTCGTTTTLFCLEKLFQIVEQELSW--AFRTTQGGKYK--P 136
Query: 122 YKVFYSRRAFMFPENQRSIHRSWNDEVNYLNQFFITGKSYVVGRIDQNDHWNLYVTKTND 181
+KVFYSRR F+FP Q +IH++W DEV+YLN+FF GKSY VGR D+++HWNLYVT+T+
Sbjct: 137 FKVFYSRRCFLFPCKQAAIHQNWADEVDYLNKFFDNGKSYSVGRNDKSNHWNLYVTETDR 196
Query: 182 ALCSGPDNAQEDDFTLEILMTDLSRSHAQRFVTD---------EPDHMDGHIIGTKMTNK 232
+ G + ++DD T E+LMT+L A +FV EP+ GH +G +MT
Sbjct: 197 STPKGKEYIEDDDETFEVLMTELDPECASKFVCGPEASTTALVEPNEDKGHNLGYQMTKN 256
Query: 233 TAINKIYDFDA--NKISFKQDSYGFQPCGYSCNMVLNQSYYYTIHVTPEQDWSYASFESN 290
T +++IY A + +SF D++ F PCGYS NM+L + YYYT+HVTPE+ WSYASFESN
Sbjct: 257 TRLDEIYVNSAQDSDLSFHHDAFAFTPCGYSSNMILAEKYYYTLHVTPEKGWSYASFESN 316
Query: 291 VLLNKIDT-TSTQLDVINNVLNIFQPLDFCLTMFIKTESAECVDAKFPYNK-VANYEKQD 348
+ + I LDV+ ++LN+FQP +F +T F K + N+ + +Y K D
Sbjct: 317 IPVFDISQGKQDNLDVLLHILNVFQPREFSMTFFTKNYQNQSFQKLLSINESLPDYIKLD 376
Query: 349 RIVHDLDDYQLIYIRYSK 366
+IV+DLDDY L Y++ K
Sbjct: 377 KIVYDLDDYHLFYMKLQK 394
>SPBP4H10.05c [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 378
Score = 192 bits (488), Expect = 7e-49
Identities = 118/383 (30%), Positives = 202/383 (51%), Gaps = 41/383 (10%)
Query: 5 TNAFEGPEKLLEIWFY-PKKTEVPHAERS---LRSIDHSKWKELLELVKCEILSTFSTDD 60
T++FEGPEKLLE+WF P KT + E++ L+++ + W ++L +C++LS ++++
Sbjct: 17 TSSFEGPEKLLELWFSAPIKTNLSAGEKANLGLKAVSRNDWDDMLAQAQCKVLSVVNSEE 76
Query: 61 MDCFLLSESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNH 120
+D +LLSESSMFVF H E+ + + F +
Sbjct: 77 IDAYLLSESSMFVFAHKIILKTCGTTTLLASLPRLLEIAS-----SVGF---------DR 122
Query: 121 PYKVFYSRRAFMFPENQRSIHRSWNDEVNYLNQFFITGKSYVVGRIDQNDHWNLYVTKTN 180
P ++FYSR+ F++PE Q + H SW +EV YL FF +G SYVVG ++N HW+L+ +
Sbjct: 123 PLRIFYSRKNFLYPERQLAPHTSWEEEVRYLQLFFPSGCSYVVGPTNKN-HWHLFSDLAD 181
Query: 181 DALCSGPDNAQEDDFTLEILMTDLSRSHAQRF----------------VTDEPDHMDGHI 224
D D+ +D TLE+LMTD+S + +F V ++ + GHI
Sbjct: 182 DYSLL-EDSLDPEDETLEVLMTDMSPERSLQFYAPSLDVVRSARGDDYVREKNNLSGGHI 240
Query: 225 IGTKMTNKTAINKIYDFDANKISFKQDSYGFQPCGYSCNMVLNQSYYYTIHVTPEQDWSY 284
+G+ + +++ + + K D++ F+P G+S NM+ + Y TIHVTP++ SY
Sbjct: 241 LGSYVADESGVRDLCSTSDKKAVL--DAFQFEPIGFSSNMIY-KDRYATIHVTPQEHCSY 297
Query: 285 ASFESNVLLNKIDTTSTQLDVINNVLNIFQPLDFCLTMFIKTESAECVDAKFPYNKVANY 344
ASFE+NV ++ + + I + F FCLT+F +++ ++Y
Sbjct: 298 ASFETNV--SQFQFGRSISETIEKTVKTFGANKFCLTLFQAKGASQEKHFSAKLKSFSSY 355
Query: 345 EKQDRIVHDLDDYQLIYIRYSKI 367
++++ IV+D Y LI+ ++ +
Sbjct: 356 KREEFIVYDFPGYDLIFASFTAV 378
>Hs4502069 [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 334
Score = 159 bits (401), Expect = 8e-39
Identities = 108/366 (29%), Positives = 176/366 (47%), Gaps = 40/366 (10%)
Query: 2 VEETNAFEGPEKLLEIWFYPKKTEVPHAERSLRSIDHSKWKELLELVKCEILSTFSTDDM 61
+E + FEG EKLLE+WF ++ + LR+I S+W LL+ V+C I+S TD
Sbjct: 1 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ 60
Query: 62 DCFLLSESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNHP 121
+ ++LSESSMFV +L D +G
Sbjct: 61 EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLAR-----------DYSGFDSIQS 109
Query: 122 YKVFYSRRAFMFPENQRSIHRSWNDEVNYLNQFFITGKSYVVGRIDQNDHWNLYVTKTND 181
+ FYSR+ FM P +Q HR++ +E+ +LN F G Y +GR++ +D W LY +
Sbjct: 110 F--FYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGRMN-SDCWYLYTLDFPE 166
Query: 182 A-LCSGPDNAQEDDFTLEILMTDLSRSHAQRFVTDEPDHMDGHIIGTKMTNKTAINKIYD 240
+ + S PD TLEILM++L + +F +M + +T ++ I +
Sbjct: 167 SRVISQPDQ------TLEILMSELDPAVMDQF------YMKDGVTAKDVTRESGIRDLIP 214
Query: 241 FDANKISFKQDSYGFQPCGYSCNMVLNQSYYYTIHVTPEQDWSYASFESNVLLNKIDTTS 300
D+ F PCGYS N + + Y+TIH+TPE ++SY SFE+N+ D
Sbjct: 215 GSVI------DATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYD--- 265
Query: 301 TQLDVINNVLNIFQPLDFCLTMFIKTESAECVDAKFPYNKVANYEKQDRIVHDLDDYQLI 360
D+I V+ +F+P F T+F+ +S++C K+ +++ D +DY +
Sbjct: 266 ---DLIRKVVEVFKPGKFVTTLFV-NQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFV 321
Query: 361 YIRYSK 366
+ ++K
Sbjct: 322 FTSFAK 327
>7297665 [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 347
Score = 155 bits (393), Expect = 7e-38
Identities = 117/367 (31%), Positives = 173/367 (46%), Gaps = 46/367 (12%)
Query: 8 FEGPEKLLEIWFYPKKTEVPHAERSLRSIDHSKWKELLELVKCEILSTFSTDDMDCFLLS 67
FEG EKLLEIWF E + + LR+I S W+ +L V C+I+ST D +D F+LS
Sbjct: 9 FEGVEKLLEIWF----EESSNGDDDLRNISRSDWENVLSNVNCQIISTSKNDIIDAFVLS 64
Query: 68 ESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNHPYKVFYS 127
ESSMFV +L + DL FYS
Sbjct: 65 ESSMFVSKRRWILKTCGTTTPLKCLGQLLKLAEAN---GYNVVADL-----------FYS 110
Query: 128 RRAFMFPENQRSIHRSWNDEVNYLNQFFITGKSYVVGRIDQNDHWNLYVTKTNDA----- 182
R+ F PE Q + H+ + +EV YL+ F G+SY +G ++ + W LY +D
Sbjct: 111 RKNFTRPEAQITPHQGFTEEVTYLDSIFPNGRSYCLGSMNL-ECWYLYTFSRSDIKITPQ 169
Query: 183 LCSGPDNAQED-DFTLEILMTDLSRSHAQRFVTDEPDHMDGHIIGTKMTNKTAINKIYDF 241
L S N D D T+EILM DL F ++ + +G T K+ I+ I
Sbjct: 170 LISDEKNVDSDPDQTIEILMQDLDPETMSIFYKNKFNDANG------ATVKSGIDTILP- 222
Query: 242 DANKISFKQDSYGFQPCGYSCNMVLNQSYYYTIHVTPEQDWSYASFESNVLLNKIDTTST 301
+ D + F PCGYS N + ++ Y TIH+TPE +SY SFE+NV L S
Sbjct: 223 -----TMHIDDFLFDPCGYSMNGINDKGEYMTIHITPENQFSYVSFETNVAL------SN 271
Query: 302 QLDVINNVLNIFQPLDFCLTMFIKTES---AECVDAKFPYNKVANYEKQDRIVHDLDDYQ 358
+IN V+N F+P F +T+F S + + Y++ +++++ D + Y
Sbjct: 272 YRKLINQVINTFKPGKFIVTIFANKCSLAYETMKELEVEYSQGSHWKRTDMQCCNFPSYN 331
Query: 359 LIYIRYS 365
L++ +YS
Sbjct: 332 LLFAQYS 338
>CE18705 [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 368
Score = 137 bits (344), Expect = 3e-32
Identities = 106/334 (31%), Positives = 163/334 (48%), Gaps = 39/334 (11%)
Query: 3 EETNAFEGPEKLLEIWFYPKKTEVPHAERSLRSIDHSKWKELLELVKCEILSTFSTDDMD 62
+E FEG EKLLE+WF + + RSLR I + +L++ +C+IL + + +D
Sbjct: 20 DEEYFFEGAEKLLELWFC---SSTQNETRSLRIIPREEIDAMLDIARCKILHSKHNESID 76
Query: 63 CFLLSESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNHPY 122
++LSESS+F+ D+ + M+L + D +
Sbjct: 77 SYVLSESSLFISDNRVILKTCGTTRLLAALP-----VIMQLAGAYAGLDQVQS------- 124
Query: 123 KVFYSRRAFMFPENQRSIHRSWNDEVNYLNQFFITGKSYVVGRIDQNDHWNLYVTKTNDA 182
V+YSR+ F+ P+ Q S+H++++ EV YL+ FF+ G +Y +G + Q D W LY T
Sbjct: 125 -VYYSRKNFLRPDLQPSLHKNFDAEVEYLDSFFVDGHAYCLGSLKQ-DRWYLY---TFHR 179
Query: 183 LCSGPDNAQEDDFTLEILMTDLSRSHAQRFVTDEPDHMDGHIIGTKMTNKTAINKIYDFD 242
P + Q D TLEILM+DL +F D + G + I+KI
Sbjct: 180 EVEFPAHKQ-PDHTLEILMSDLDEEVLHKFTKDYA------VDGNDCFMRAGIDKIIPAG 232
Query: 243 ANKISFKQDSYGFQPCGYSCNMVLNQS-YYYTIHVTPEQDWSYASFESNVLLNKIDTTST 301
A+ D F PCGYS N +N + Y TIHVTPE+ +S+ASFE+N L + + +
Sbjct: 233 AD----VHDEL-FDPCGYSMNAYMNDTDQYATIHVTPEKAFSFASFETNQDLVCLYSQT- 286
Query: 302 QLDVINNVLNIFQPLDFCLTMFIKTESAECVDAK 335
VL F+P +T+F S + DA+
Sbjct: 287 -----RKVLQCFRPNKILMTVFANDISEKGKDAQ 315
>At3g02470 [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 366
Score = 124 bits (312), Expect = 2e-28
Identities = 100/355 (28%), Positives = 156/355 (43%), Gaps = 57/355 (16%)
Query: 8 FEGPEKLLEIWFYPKKTEVPHAERSLRSIDHSKWKELLELVKCEILSTFSTDDMDCFLLS 67
FEG EK LE+ F+ LR++ S+ E+L C I+S+ S D +D ++LS
Sbjct: 8 FEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQLDSYVLS 67
Query: 68 ESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNHPYKVFYS 127
ESS FV+ + + L GE+ V Y+
Sbjct: 68 ESSFFVYPYKVIIKTCGTTKLLLSIPPLLK---------------LAGELSLSVKSVKYT 112
Query: 128 RRAFMFPENQRSIHRSWNDEVNYLNQFF----ITGKSYVVGRIDQNDHWNLYVTKTNDAL 183
R +F+ P Q HRS+++EV+ L+ F + +Y++G D+ W++Y D+
Sbjct: 113 RGSFLCPGGQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDS- 171
Query: 184 CSGPDNAQEDDFTLEILMTDLSRSHAQRFVTDEPDHMDGHIIGTKMTNKTAINKIYDFDA 243
N + +TLE+ MT L R A F DE D MT+ + I KI
Sbjct: 172 ----SNCNNNVYTLEMCMTGLDREKAAVFYKDEADKTG------SMTDNSGIRKI--LPK 219
Query: 244 NKISFKQDSYGFQPCGYSCNMVLNQSYYYTIHVTPEQDWSYASFES-NVLLNKIDTTSTQ 302
++I + F+PCGYS N + + TIHVTPE +SYASFE+ N +D +
Sbjct: 220 SEIC----DFEFEPCGYSMNSIEGDA-ISTIHVTPEDGFSYASFEAVGYDFNTLDLS--- 271
Query: 303 LDVINNVLNIFQPLDFCLTMFIKTESAECVDAKFPYNKVANYEKQDRIVHDLDDY 357
++ VL+ F+P F + + ++ V + I DL+DY
Sbjct: 272 -QLVTRVLSCFEPKQFSVAV---------------HSSVGANSYKPEITVDLEDY 310
>At5g15950 [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 362
Score = 121 bits (303), Expect = 2e-27
Identities = 99/354 (27%), Positives = 165/354 (45%), Gaps = 56/354 (15%)
Query: 8 FEGPEKLLEIWFYPKKTEVPHAERSLRSIDHSKWKELLELVKCEILSTFSTDDMDCFLLS 67
FEG EK LE+ F+ + + LR++ S+ E+L+ +C I+S+ S D +D ++LS
Sbjct: 8 FEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSLSNDQLDSYVLS 67
Query: 68 ESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNHPYKVFYS 127
ESS+F+F + L+++E L GE+ V Y+
Sbjct: 68 ESSLFIFPYKIVIKTCGTTKL---------LLSIEPLLR------LAGELSLDVKAVRYT 112
Query: 128 RRAFMFPENQRSIHRSWNDEVNYLNQFF----ITGKSYVVGRIDQNDHWNLYVTKTNDAL 183
R +F+ P Q HR++++EV+ L+ F ++ +Y++G D+ W++Y +
Sbjct: 113 RGSFLCPGGQPFPHRNFSEEVSVLDGHFAKLGLSSVAYLMGNDDETKKWHVY------SA 166
Query: 184 CSGPDNAQEDDFTLEILMTDLSRSHAQRFVTDEPDHMDGHIIGTKMTNKTAINKIYDFDA 243
S N + + +TLE+ MT L + A F +E MT+ + I KI
Sbjct: 167 SSANSNNKNNVYTLEMCMTGLDKDKASVFYKNESSS------AGSMTDNSGIRKI--LPQ 218
Query: 244 NKISFKQDSYGFQPCGYSCNMVLNQSYYYTIHVTPEQDWSYASFESNVLLNKIDTTSTQL 303
++I + F+PCGYS N + + TIHVTPE +SYASFE+ + TT
Sbjct: 219 SQIC----DFEFEPCGYSMNSIEGDA-ISTIHVTPEDGFSYASFEA---VGYDFTTMDLS 270
Query: 304 DVINNVLNIFQPLDFCLTMFIKTESAECVDAKFPYNKVANYEKQDRIVHDLDDY 357
+++ VL F+P F + + ++ VA + DLDDY
Sbjct: 271 HLVSKVLTCFKPKQFSVAV---------------HSTVAQKSYDSGLSVDLDDY 309
>At3g25570 [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 349
Score = 111 bits (277), Expect = 2e-24
Identities = 106/379 (27%), Positives = 175/379 (45%), Gaps = 57/379 (15%)
Query: 1 MVEETNAFEGPEKLLEIWFYPKKTEVPHAERSLRSIDHSKWKELLELVKCEILSTFSTDD 60
M FEG EK LEI F+ + +SLRS+ S+ E+L +C I+S+ +
Sbjct: 1 MAVSATGFEGFEKRLEISFFETTDFLDPQGKSLRSLTKSQLDEILTPAECTIVSSLTNSF 60
Query: 61 MDCFLLSESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNH 120
+D ++LSESS+FV+ + + + + + D L +K+
Sbjct: 61 VDSYVLSESSLFVYPYKIIIKTCGTTK-----------LLLSIPHILRLADSLCLTVKS- 108
Query: 121 PYKVFYSRRAFMFPENQRSIHRSWNDEVNYLNQFF----ITGKSYVVGRIDQN-DHWNLY 175
V Y+R +F+FP Q HRS+++EV L+ +F K++V+G D N W++Y
Sbjct: 109 ---VRYTRGSFIFPGAQSYPHRSFSEEVALLDDYFGKLNAGSKAFVMGGSDNNPQRWHVY 165
Query: 176 VTKTND--ALCSGPDNAQEDDFTLEILMTDLSRSHAQRFVTDEPDHMDGHIIGTKMTNKT 233
+ + A+C P +TLE+ MT L A F I + + N
Sbjct: 166 SASSTEESAVCDKP------VYTLEMCMTGLDNIKASVFFKTNSVSASEMTISSGIRNIL 219
Query: 234 AINKIYDFDANKISFKQDSYGFQPCGYSCNMVLNQSYYYTIHVTPEQDWSYASFES-NVL 292
++I DF+ F+PCGYS N + + TIHVTPE +SYASFE+
Sbjct: 220 PGSEICDFN------------FEPCGYSMNSIEGDA-VSTIHVTPEDGFSYASFETVGYD 266
Query: 293 LNKIDTTSTQLDVINNVLNIFQPLDFCLTMF--IKTE--SAECVDAKFPYNKVANYEKQD 348
L ++ ++++ VL F P +F + + + TE +++CV V Y Q+
Sbjct: 267 LKALNFK----ELVDRVLVCFGPEEFSVAVHANLGTEVLASDCV------ADVNGYFSQE 316
Query: 349 RIVHDLD-DYQLIYIRYSK 366
R + +L ++Y R+ K
Sbjct: 317 RELEELGLGGSVLYQRFVK 335
>At5g18930 [T] KOG0788 S-adenosylmethionine decarboxylase
Length = 347
Score = 95.5 bits (236), Expect = 1e-19
Identities = 88/322 (27%), Positives = 142/322 (43%), Gaps = 44/322 (13%)
Query: 6 NAFEGPEKLLEIWFYPKKTEVPHAERSLRSIDHSKWKELLELVKCEILSTFSTDDMDCFL 65
+ FEG EK LE+ F+ + LR ID ++L V+C ++S + D ++
Sbjct: 4 SGFEGFEKRLELRFFDDDKPITKNPMGLRLIDFESLDQVLNEVQCTVVSAVANRSFDAYV 63
Query: 66 LSESSMFVFDHXXXXXXXXXXXXXXXXXXXFELINMELEWNFQFRDDLTGEIKNHPYKVF 125
LSESS+FV+ LI++ R
Sbjct: 64 LSESSLFVYPTKIIIKTCGTTQLLKSIR---PLIHLARNLGLTLR------------ACR 108
Query: 126 YSRRAFMFPENQRSIHRSWNDEVNYLNQFFITGKSYVVGRI-----DQNDHWNLYVTKTN 180
YSR +F+FP+ Q + S+ DEV + + Y + + + W+++
Sbjct: 109 YSRGSFIFPKAQPFPYTSFKDEVIVVEESLPKSLCYRKASVMTPSNNPSRAWHVFTA--- 165
Query: 181 DALCSGPDNAQEDDFTLEILMTDLSRSHAQRFVT---DEPDHMDGHIIGTKMTNKTAINK 237
S + E +E+ MT+L R +A+ F DE ++ D G +MT + I+
Sbjct: 166 ----SADVESDEHVVVVEVCMTELDRVNARSFFKRKGDEKNNSDS--AGKEMTRLSGIDN 219
Query: 238 IYDFDANKISFKQDSYGFQPCGYSCNMVLNQSYYYTIHVTPEQDWSYASFESNVLL--NK 295
I N ++ D + F PCGYS N V + Y TIHVTPE +SYASFE + L N
Sbjct: 220 I-----NANAYICD-FAFDPCGYSMNGV-DGDRYSTIHVTPEDGFSYASFECGLSLYDNG 272
Query: 296 IDTTSTQLDVINNVLNIFQPLD 317
+ S +V++ +++F+P D
Sbjct: 273 HEDIS---EVLSRAIDVFRPSD 291
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,001,937
Number of Sequences: 60738
Number of extensions: 903986
Number of successful extensions: 2079
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2037
Number of HSP's gapped (non-prelim): 14
length of query: 367
length of database: 30,389,216
effective HSP length: 108
effective length of query: 259
effective length of database: 23,829,512
effective search space: 6171843608
effective search space used: 6171843608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)